data_7X5M # _entry.id 7X5M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7X5M pdb_00007x5m 10.2210/pdb7x5m/pdb WWPDB D_1300028118 ? ? EMDB EMD-32126 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-32126 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7X5M _pdbx_database_status.recvd_initial_deposition_date 2022-03-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tan, Y.' 1 ? 'Xu, C.' 2 ? 'Yu, D.' 3 ? 'Song, W.' 4 ? 'Wu, B.' 5 ? 'Schulze-Lefert, P.' 6 ? 'Chai, J.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 185 _citation.language ? _citation.page_first 2370 _citation.page_last 2386.e18 _citation.title ;TIR domains of plant immune receptors are 2',3'-cAMP/cGMP synthetases mediating cell death. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2022.04.032 _citation.pdbx_database_id_PubMed 35597242 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yu, D.' 1 ? primary 'Song, W.' 2 ? primary 'Tan, E.Y.J.' 3 ? primary 'Liu, L.' 4 ? primary 'Cao, Y.' 5 ? primary 'Jirschitzka, J.' 6 ? primary 'Li, E.' 7 ? primary 'Logemann, E.' 8 ? primary 'Xu, C.' 9 ? primary 'Huang, S.' 10 ? primary 'Jia, A.' 11 ? primary 'Chang, X.' 12 ? primary 'Han, Z.' 13 ? primary 'Wu, B.' 14 ? primary 'Schulze-Lefert, P.' 15 ? primary 'Chai, J.' 16 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7X5M _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(P*AP*TP*TP*AP*A)-3') ; 1503.049 1 ? ? ? ? 2 polymer man ;DNA (5'-D(P*AP*TP*TP*TP*A)-3') ; 1494.035 1 ? ? ? ? 3 polymer man 'Flax rust resistance protein' 23532.344 2 ? E197G 'L7-Tir domain' ? 4 non-polymer syn ;2',3'- cyclic AMP ; 329.206 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DT)(DT)(DA)(DA)' ATTAA C ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DT)(DT)(DA)' ATTTA E ? 3 'polypeptide(L)' no no ;NSKDSIVNDDDDSTSEVDAIPDSTNPSGSFPSVEYDVFLSFRGPDTRKQFTDFLYHFLCYYKIHTFRDDDELRKGKEIGP NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTI QNWKDALKKVGDLKGWHIGKDDEQGAIADKVSADIWSHISKENL ; ;NSKDSIVNDDDDSTSEVDAIPDSTNPSGSFPSVEYDVFLSFRGPDTRKQFTDFLYHFLCYYKIHTFRDDDELRKGKEIGP NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTI QNWKDALKKVGDLKGWHIGKDDEQGAIADKVSADIWSHISKENL ; B,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DT n 1 4 DA n 1 5 DA n 2 1 DA n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DA n 3 1 ASN n 3 2 SER n 3 3 LYS n 3 4 ASP n 3 5 SER n 3 6 ILE n 3 7 VAL n 3 8 ASN n 3 9 ASP n 3 10 ASP n 3 11 ASP n 3 12 ASP n 3 13 SER n 3 14 THR n 3 15 SER n 3 16 GLU n 3 17 VAL n 3 18 ASP n 3 19 ALA n 3 20 ILE n 3 21 PRO n 3 22 ASP n 3 23 SER n 3 24 THR n 3 25 ASN n 3 26 PRO n 3 27 SER n 3 28 GLY n 3 29 SER n 3 30 PHE n 3 31 PRO n 3 32 SER n 3 33 VAL n 3 34 GLU n 3 35 TYR n 3 36 ASP n 3 37 VAL n 3 38 PHE n 3 39 LEU n 3 40 SER n 3 41 PHE n 3 42 ARG n 3 43 GLY n 3 44 PRO n 3 45 ASP n 3 46 THR n 3 47 ARG n 3 48 LYS n 3 49 GLN n 3 50 PHE n 3 51 THR n 3 52 ASP n 3 53 PHE n 3 54 LEU n 3 55 TYR n 3 56 HIS n 3 57 PHE n 3 58 LEU n 3 59 CYS n 3 60 TYR n 3 61 TYR n 3 62 LYS n 3 63 ILE n 3 64 HIS n 3 65 THR n 3 66 PHE n 3 67 ARG n 3 68 ASP n 3 69 ASP n 3 70 ASP n 3 71 GLU n 3 72 LEU n 3 73 ARG n 3 74 LYS n 3 75 GLY n 3 76 LYS n 3 77 GLU n 3 78 ILE n 3 79 GLY n 3 80 PRO n 3 81 ASN n 3 82 LEU n 3 83 LEU n 3 84 ARG n 3 85 ALA n 3 86 ILE n 3 87 ASP n 3 88 GLN n 3 89 SER n 3 90 LYS n 3 91 ILE n 3 92 TYR n 3 93 VAL n 3 94 PRO n 3 95 ILE n 3 96 ILE n 3 97 SER n 3 98 SER n 3 99 GLY n 3 100 TYR n 3 101 ALA n 3 102 ASP n 3 103 SER n 3 104 LYS n 3 105 TRP n 3 106 CYS n 3 107 LEU n 3 108 MET n 3 109 GLU n 3 110 LEU n 3 111 ALA n 3 112 GLU n 3 113 ILE n 3 114 VAL n 3 115 ARG n 3 116 ARG n 3 117 GLN n 3 118 GLU n 3 119 GLU n 3 120 ASP n 3 121 PRO n 3 122 ARG n 3 123 ARG n 3 124 ILE n 3 125 ILE n 3 126 LEU n 3 127 PRO n 3 128 ILE n 3 129 PHE n 3 130 TYR n 3 131 MET n 3 132 VAL n 3 133 ASP n 3 134 PRO n 3 135 SER n 3 136 ASP n 3 137 VAL n 3 138 ARG n 3 139 HIS n 3 140 GLN n 3 141 THR n 3 142 GLY n 3 143 CYS n 3 144 TYR n 3 145 LYS n 3 146 LYS n 3 147 ALA n 3 148 PHE n 3 149 ARG n 3 150 LYS n 3 151 HIS n 3 152 ALA n 3 153 ASN n 3 154 LYS n 3 155 PHE n 3 156 ASP n 3 157 GLY n 3 158 GLN n 3 159 THR n 3 160 ILE n 3 161 GLN n 3 162 ASN n 3 163 TRP n 3 164 LYS n 3 165 ASP n 3 166 ALA n 3 167 LEU n 3 168 LYS n 3 169 LYS n 3 170 VAL n 3 171 GLY n 3 172 ASP n 3 173 LEU n 3 174 LYS n 3 175 GLY n 3 176 TRP n 3 177 HIS n 3 178 ILE n 3 179 GLY n 3 180 LYS n 3 181 ASP n 3 182 ASP n 3 183 GLU n 3 184 GLN n 3 185 GLY n 3 186 ALA n 3 187 ILE n 3 188 ALA n 3 189 ASP n 3 190 LYS n 3 191 VAL n 3 192 SER n 3 193 ALA n 3 194 ASP n 3 195 ILE n 3 196 TRP n 3 197 SER n 3 198 HIS n 3 199 ILE n 3 200 SER n 3 201 LYS n 3 202 GLU n 3 203 ASN n 3 204 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 5 ? ? ? ? ? ? ? ? ? 'DNA molecule' 2853804 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 5 ? ? ? ? ? ? ? ? ? 'DNA molecule' 2853804 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 204 ? ? ? ? ? ? ? ? ? 'Linum usitatissimum' 4006 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7X5M 7X5M ? 1 ? 1 2 PDB 7X5M 7X5M ? 2 ? 1 3 UNP Q9XEH4_LINUS Q9XEH4 ? 3 ;NSKDSIVNDDDDSTSEVDAIPDSTNPSGSFPSVEYDVFLSFRGPDTRKQFTDFLYHFLCYYKIHTFRDDDELRKGKEIGP NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTI QNWKDALKKVEDLKGWHIGKDDEQGAIADKVSADIWSHISKENL ; 27 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7X5M C 1 ? 5 ? 7X5M 3 ? 7 ? 3 7 2 2 7X5M E 1 ? 5 ? 7X5M 3 ? 7 ? 3 7 3 3 7X5M B 1 ? 204 ? Q9XEH4 27 ? 230 ? 27 230 4 3 7X5M F 1 ? 204 ? Q9XEH4 27 ? 230 ? 27 230 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 7X5M GLY B 171 ? UNP Q9XEH4 GLU 197 'engineered mutation' 197 1 4 7X5M GLY F 171 ? UNP Q9XEH4 GLU 197 'engineered mutation' 197 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACK non-polymer . ;2',3'- cyclic AMP ; ? 'C10 H12 N5 O6 P' 329.206 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7X5M _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7X5M _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3132 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.509 ? 4261 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 16.703 ? 1168 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.043 ? 442 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 510 ? f_plane_restr ? ? # _struct.entry_id 7X5M _struct.title 'Tir-dsDNA complex, the initial binding state' _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7X5M _struct_keywords.text ;plant innate immune receptor, nucleic acids, 2', 3'cNMP, HYDROLASE-DNA COMPLEX ; _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR C 51 ? TYR C 60 ? THR B 77 TYR B 86 1 ? 10 HELX_P HELX_P2 AA2 ASN C 81 ? SER C 89 ? ASN B 107 SER B 115 1 ? 9 HELX_P HELX_P3 AA3 SER C 103 ? GLU C 118 ? SER B 129 GLU B 144 1 ? 16 HELX_P HELX_P4 AA4 TYR C 144 ? HIS C 151 ? TYR B 170 HIS B 177 1 ? 8 HELX_P HELX_P5 AA5 ALA C 152 ? LYS C 154 ? ALA B 178 LYS B 180 5 ? 3 HELX_P HELX_P6 AA6 GLN C 158 ? GLY C 171 ? GLN B 184 GLY B 197 1 ? 14 HELX_P HELX_P7 AA7 GLY C 185 ? LYS C 201 ? GLY B 211 LYS B 227 1 ? 17 HELX_P HELX_P8 AA8 PHE D 50 ? TYR D 60 ? PHE F 76 TYR F 86 1 ? 11 HELX_P HELX_P9 AA9 ASN D 81 ? SER D 89 ? ASN F 107 SER F 115 1 ? 9 HELX_P HELX_P10 AB1 SER D 103 ? ASP D 120 ? SER F 129 ASP F 146 1 ? 18 HELX_P HELX_P11 AB2 LYS D 150 ? LYS D 154 ? LYS F 176 LYS F 180 5 ? 5 HELX_P HELX_P12 AB3 GLN D 158 ? ASP D 165 ? GLN F 184 ASP F 191 1 ? 8 HELX_P HELX_P13 AB4 ALA D 166 ? GLY D 171 ? ALA F 192 GLY F 197 1 ? 6 HELX_P HELX_P14 AB5 GLU D 183 ? LYS D 201 ? GLU F 209 LYS F 227 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR C 65 ? PHE C 66 ? THR B 91 PHE B 92 AA1 2 VAL C 37 ? SER C 40 ? VAL B 63 SER B 66 AA1 3 ILE C 91 ? PRO C 94 ? ILE B 117 PRO B 120 AA1 4 ILE C 124 ? ILE C 125 ? ILE B 150 ILE B 151 AA2 1 THR D 65 ? PHE D 66 ? THR F 91 PHE F 92 AA2 2 VAL D 37 ? SER D 40 ? VAL F 63 SER F 66 AA2 3 ILE D 91 ? PRO D 94 ? ILE F 117 PRO F 120 AA2 4 ILE D 124 ? ILE D 125 ? ILE F 150 ILE F 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE C 66 ? O PHE B 92 N VAL C 37 ? N VAL B 63 AA1 2 3 N PHE C 38 ? N PHE B 64 O VAL C 93 ? O VAL B 119 AA1 3 4 N TYR C 92 ? N TYR B 118 O ILE C 124 ? O ILE B 150 AA2 1 2 O PHE D 66 ? O PHE F 92 N VAL D 37 ? N VAL F 63 AA2 2 3 N PHE D 38 ? N PHE F 64 O VAL D 93 ? O VAL F 119 AA2 3 4 N TYR D 92 ? N TYR F 118 O ILE D 124 ? O ILE F 150 # _atom_sites.entry_id 7X5M _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 3 3 DA DA C . n A 1 2 DT 2 4 4 DT DT C . n A 1 3 DT 3 5 5 DT DT C . n A 1 4 DA 4 6 6 DA DA C . n A 1 5 DA 5 7 7 DA DA C . n B 2 1 DA 1 3 3 DA DA E . n B 2 2 DT 2 4 4 DT DT E . n B 2 3 DT 3 5 5 DT DT E . n B 2 4 DT 4 6 6 DT DT E . n B 2 5 DA 5 7 7 DA DA E . n C 3 1 ASN 1 27 ? ? ? B . n C 3 2 SER 2 28 ? ? ? B . n C 3 3 LYS 3 29 ? ? ? B . n C 3 4 ASP 4 30 ? ? ? B . n C 3 5 SER 5 31 ? ? ? B . n C 3 6 ILE 6 32 ? ? ? B . n C 3 7 VAL 7 33 ? ? ? B . n C 3 8 ASN 8 34 ? ? ? B . n C 3 9 ASP 9 35 ? ? ? B . n C 3 10 ASP 10 36 ? ? ? B . n C 3 11 ASP 11 37 ? ? ? B . n C 3 12 ASP 12 38 ? ? ? B . n C 3 13 SER 13 39 ? ? ? B . n C 3 14 THR 14 40 ? ? ? B . n C 3 15 SER 15 41 ? ? ? B . n C 3 16 GLU 16 42 ? ? ? B . n C 3 17 VAL 17 43 ? ? ? B . n C 3 18 ASP 18 44 ? ? ? B . n C 3 19 ALA 19 45 ? ? ? B . n C 3 20 ILE 20 46 ? ? ? B . n C 3 21 PRO 21 47 ? ? ? B . n C 3 22 ASP 22 48 ? ? ? B . n C 3 23 SER 23 49 ? ? ? B . n C 3 24 THR 24 50 ? ? ? B . n C 3 25 ASN 25 51 ? ? ? B . n C 3 26 PRO 26 52 ? ? ? B . n C 3 27 SER 27 53 ? ? ? B . n C 3 28 GLY 28 54 ? ? ? B . n C 3 29 SER 29 55 ? ? ? B . n C 3 30 PHE 30 56 ? ? ? B . n C 3 31 PRO 31 57 ? ? ? B . n C 3 32 SER 32 58 ? ? ? B . n C 3 33 VAL 33 59 59 VAL VAL B . n C 3 34 GLU 34 60 60 GLU GLU B . n C 3 35 TYR 35 61 61 TYR TYR B . n C 3 36 ASP 36 62 62 ASP ASP B . n C 3 37 VAL 37 63 63 VAL VAL B . n C 3 38 PHE 38 64 64 PHE PHE B . n C 3 39 LEU 39 65 65 LEU LEU B . n C 3 40 SER 40 66 66 SER SER B . n C 3 41 PHE 41 67 67 PHE PHE B . n C 3 42 ARG 42 68 68 ARG ARG B . n C 3 43 GLY 43 69 69 GLY GLY B . n C 3 44 PRO 44 70 70 PRO PRO B . n C 3 45 ASP 45 71 71 ASP ASP B . n C 3 46 THR 46 72 72 THR THR B . n C 3 47 ARG 47 73 73 ARG ARG B . n C 3 48 LYS 48 74 74 LYS LYS B . n C 3 49 GLN 49 75 75 GLN GLN B . n C 3 50 PHE 50 76 76 PHE PHE B . n C 3 51 THR 51 77 77 THR THR B . n C 3 52 ASP 52 78 78 ASP ASP B . n C 3 53 PHE 53 79 79 PHE PHE B . n C 3 54 LEU 54 80 80 LEU LEU B . n C 3 55 TYR 55 81 81 TYR TYR B . n C 3 56 HIS 56 82 82 HIS HIS B . n C 3 57 PHE 57 83 83 PHE PHE B . n C 3 58 LEU 58 84 84 LEU LEU B . n C 3 59 CYS 59 85 85 CYS CYS B . n C 3 60 TYR 60 86 86 TYR TYR B . n C 3 61 TYR 61 87 87 TYR TYR B . n C 3 62 LYS 62 88 88 LYS LYS B . n C 3 63 ILE 63 89 89 ILE ILE B . n C 3 64 HIS 64 90 90 HIS HIS B . n C 3 65 THR 65 91 91 THR THR B . n C 3 66 PHE 66 92 92 PHE PHE B . n C 3 67 ARG 67 93 93 ARG ARG B . n C 3 68 ASP 68 94 94 ASP ASP B . n C 3 69 ASP 69 95 95 ASP ASP B . n C 3 70 ASP 70 96 96 ASP ASP B . n C 3 71 GLU 71 97 97 GLU GLU B . n C 3 72 LEU 72 98 98 LEU LEU B . n C 3 73 ARG 73 99 99 ARG ARG B . n C 3 74 LYS 74 100 100 LYS LYS B . n C 3 75 GLY 75 101 101 GLY GLY B . n C 3 76 LYS 76 102 102 LYS LYS B . n C 3 77 GLU 77 103 103 GLU GLU B . n C 3 78 ILE 78 104 104 ILE ILE B . n C 3 79 GLY 79 105 105 GLY GLY B . n C 3 80 PRO 80 106 106 PRO PRO B . n C 3 81 ASN 81 107 107 ASN ASN B . n C 3 82 LEU 82 108 108 LEU LEU B . n C 3 83 LEU 83 109 109 LEU LEU B . n C 3 84 ARG 84 110 110 ARG ARG B . n C 3 85 ALA 85 111 111 ALA ALA B . n C 3 86 ILE 86 112 112 ILE ILE B . n C 3 87 ASP 87 113 113 ASP ASP B . n C 3 88 GLN 88 114 114 GLN GLN B . n C 3 89 SER 89 115 115 SER SER B . n C 3 90 LYS 90 116 116 LYS LYS B . n C 3 91 ILE 91 117 117 ILE ILE B . n C 3 92 TYR 92 118 118 TYR TYR B . n C 3 93 VAL 93 119 119 VAL VAL B . n C 3 94 PRO 94 120 120 PRO PRO B . n C 3 95 ILE 95 121 121 ILE ILE B . n C 3 96 ILE 96 122 122 ILE ILE B . n C 3 97 SER 97 123 123 SER SER B . n C 3 98 SER 98 124 124 SER SER B . n C 3 99 GLY 99 125 125 GLY GLY B . n C 3 100 TYR 100 126 126 TYR TYR B . n C 3 101 ALA 101 127 127 ALA ALA B . n C 3 102 ASP 102 128 128 ASP ASP B . n C 3 103 SER 103 129 129 SER SER B . n C 3 104 LYS 104 130 130 LYS LYS B . n C 3 105 TRP 105 131 131 TRP TRP B . n C 3 106 CYS 106 132 132 CYS CYS B . n C 3 107 LEU 107 133 133 LEU LEU B . n C 3 108 MET 108 134 134 MET MET B . n C 3 109 GLU 109 135 135 GLU GLU B . n C 3 110 LEU 110 136 136 LEU LEU B . n C 3 111 ALA 111 137 137 ALA ALA B . n C 3 112 GLU 112 138 138 GLU GLU B . n C 3 113 ILE 113 139 139 ILE ILE B . n C 3 114 VAL 114 140 140 VAL VAL B . n C 3 115 ARG 115 141 141 ARG ARG B . n C 3 116 ARG 116 142 142 ARG ARG B . n C 3 117 GLN 117 143 143 GLN GLN B . n C 3 118 GLU 118 144 144 GLU GLU B . n C 3 119 GLU 119 145 145 GLU GLU B . n C 3 120 ASP 120 146 146 ASP ASP B . n C 3 121 PRO 121 147 147 PRO PRO B . n C 3 122 ARG 122 148 148 ARG ARG B . n C 3 123 ARG 123 149 149 ARG ARG B . n C 3 124 ILE 124 150 150 ILE ILE B . n C 3 125 ILE 125 151 151 ILE ILE B . n C 3 126 LEU 126 152 152 LEU LEU B . n C 3 127 PRO 127 153 153 PRO PRO B . n C 3 128 ILE 128 154 154 ILE ILE B . n C 3 129 PHE 129 155 155 PHE PHE B . n C 3 130 TYR 130 156 156 TYR TYR B . n C 3 131 MET 131 157 157 MET MET B . n C 3 132 VAL 132 158 158 VAL VAL B . n C 3 133 ASP 133 159 159 ASP ASP B . n C 3 134 PRO 134 160 160 PRO PRO B . n C 3 135 SER 135 161 161 SER SER B . n C 3 136 ASP 136 162 162 ASP ASP B . n C 3 137 VAL 137 163 163 VAL VAL B . n C 3 138 ARG 138 164 164 ARG ARG B . n C 3 139 HIS 139 165 165 HIS HIS B . n C 3 140 GLN 140 166 166 GLN GLN B . n C 3 141 THR 141 167 167 THR THR B . n C 3 142 GLY 142 168 168 GLY GLY B . n C 3 143 CYS 143 169 169 CYS CYS B . n C 3 144 TYR 144 170 170 TYR TYR B . n C 3 145 LYS 145 171 171 LYS LYS B . n C 3 146 LYS 146 172 172 LYS LYS B . n C 3 147 ALA 147 173 173 ALA ALA B . n C 3 148 PHE 148 174 174 PHE PHE B . n C 3 149 ARG 149 175 175 ARG ARG B . n C 3 150 LYS 150 176 176 LYS LYS B . n C 3 151 HIS 151 177 177 HIS HIS B . n C 3 152 ALA 152 178 178 ALA ALA B . n C 3 153 ASN 153 179 179 ASN ASN B . n C 3 154 LYS 154 180 180 LYS LYS B . n C 3 155 PHE 155 181 181 PHE PHE B . n C 3 156 ASP 156 182 182 ASP ASP B . n C 3 157 GLY 157 183 183 GLY GLY B . n C 3 158 GLN 158 184 184 GLN GLN B . n C 3 159 THR 159 185 185 THR THR B . n C 3 160 ILE 160 186 186 ILE ILE B . n C 3 161 GLN 161 187 187 GLN GLN B . n C 3 162 ASN 162 188 188 ASN ASN B . n C 3 163 TRP 163 189 189 TRP TRP B . n C 3 164 LYS 164 190 190 LYS LYS B . n C 3 165 ASP 165 191 191 ASP ASP B . n C 3 166 ALA 166 192 192 ALA ALA B . n C 3 167 LEU 167 193 193 LEU LEU B . n C 3 168 LYS 168 194 194 LYS LYS B . n C 3 169 LYS 169 195 195 LYS LYS B . n C 3 170 VAL 170 196 196 VAL VAL B . n C 3 171 GLY 171 197 197 GLY GLY B . n C 3 172 ASP 172 198 198 ASP ASP B . n C 3 173 LEU 173 199 199 LEU LEU B . n C 3 174 LYS 174 200 200 LYS LYS B . n C 3 175 GLY 175 201 201 GLY GLY B . n C 3 176 TRP 176 202 202 TRP TRP B . n C 3 177 HIS 177 203 203 HIS HIS B . n C 3 178 ILE 178 204 204 ILE ILE B . n C 3 179 GLY 179 205 205 GLY GLY B . n C 3 180 LYS 180 206 206 LYS LYS B . n C 3 181 ASP 181 207 207 ASP ASP B . n C 3 182 ASP 182 208 208 ASP ASP B . n C 3 183 GLU 183 209 209 GLU GLU B . n C 3 184 GLN 184 210 210 GLN GLN B . n C 3 185 GLY 185 211 211 GLY GLY B . n C 3 186 ALA 186 212 212 ALA ALA B . n C 3 187 ILE 187 213 213 ILE ILE B . n C 3 188 ALA 188 214 214 ALA ALA B . n C 3 189 ASP 189 215 215 ASP ASP B . n C 3 190 LYS 190 216 216 LYS LYS B . n C 3 191 VAL 191 217 217 VAL VAL B . n C 3 192 SER 192 218 218 SER SER B . n C 3 193 ALA 193 219 219 ALA ALA B . n C 3 194 ASP 194 220 220 ASP ASP B . n C 3 195 ILE 195 221 221 ILE ILE B . n C 3 196 TRP 196 222 222 TRP TRP B . n C 3 197 SER 197 223 223 SER SER B . n C 3 198 HIS 198 224 224 HIS HIS B . n C 3 199 ILE 199 225 225 ILE ILE B . n C 3 200 SER 200 226 226 SER SER B . n C 3 201 LYS 201 227 227 LYS LYS B . n C 3 202 GLU 202 228 228 GLU GLU B . n C 3 203 ASN 203 229 ? ? ? B . n C 3 204 LEU 204 230 ? ? ? B . n D 3 1 ASN 1 27 ? ? ? F . n D 3 2 SER 2 28 ? ? ? F . n D 3 3 LYS 3 29 ? ? ? F . n D 3 4 ASP 4 30 ? ? ? F . n D 3 5 SER 5 31 ? ? ? F . n D 3 6 ILE 6 32 ? ? ? F . n D 3 7 VAL 7 33 ? ? ? F . n D 3 8 ASN 8 34 ? ? ? F . n D 3 9 ASP 9 35 ? ? ? F . n D 3 10 ASP 10 36 ? ? ? F . n D 3 11 ASP 11 37 ? ? ? F . n D 3 12 ASP 12 38 ? ? ? F . n D 3 13 SER 13 39 ? ? ? F . n D 3 14 THR 14 40 ? ? ? F . n D 3 15 SER 15 41 ? ? ? F . n D 3 16 GLU 16 42 ? ? ? F . n D 3 17 VAL 17 43 ? ? ? F . n D 3 18 ASP 18 44 ? ? ? F . n D 3 19 ALA 19 45 ? ? ? F . n D 3 20 ILE 20 46 ? ? ? F . n D 3 21 PRO 21 47 ? ? ? F . n D 3 22 ASP 22 48 ? ? ? F . n D 3 23 SER 23 49 ? ? ? F . n D 3 24 THR 24 50 ? ? ? F . n D 3 25 ASN 25 51 ? ? ? F . n D 3 26 PRO 26 52 ? ? ? F . n D 3 27 SER 27 53 ? ? ? F . n D 3 28 GLY 28 54 ? ? ? F . n D 3 29 SER 29 55 ? ? ? F . n D 3 30 PHE 30 56 ? ? ? F . n D 3 31 PRO 31 57 ? ? ? F . n D 3 32 SER 32 58 ? ? ? F . n D 3 33 VAL 33 59 59 VAL VAL F . n D 3 34 GLU 34 60 60 GLU GLU F . n D 3 35 TYR 35 61 61 TYR TYR F . n D 3 36 ASP 36 62 62 ASP ASP F . n D 3 37 VAL 37 63 63 VAL VAL F . n D 3 38 PHE 38 64 64 PHE PHE F . n D 3 39 LEU 39 65 65 LEU LEU F . n D 3 40 SER 40 66 66 SER SER F . n D 3 41 PHE 41 67 67 PHE PHE F . n D 3 42 ARG 42 68 68 ARG ARG F . n D 3 43 GLY 43 69 69 GLY GLY F . n D 3 44 PRO 44 70 70 PRO PRO F . n D 3 45 ASP 45 71 71 ASP ASP F . n D 3 46 THR 46 72 72 THR THR F . n D 3 47 ARG 47 73 73 ARG ARG F . n D 3 48 LYS 48 74 74 LYS LYS F . n D 3 49 GLN 49 75 75 GLN GLN F . n D 3 50 PHE 50 76 76 PHE PHE F . n D 3 51 THR 51 77 77 THR THR F . n D 3 52 ASP 52 78 78 ASP ASP F . n D 3 53 PHE 53 79 79 PHE PHE F . n D 3 54 LEU 54 80 80 LEU LEU F . n D 3 55 TYR 55 81 81 TYR TYR F . n D 3 56 HIS 56 82 82 HIS HIS F . n D 3 57 PHE 57 83 83 PHE PHE F . n D 3 58 LEU 58 84 84 LEU LEU F . n D 3 59 CYS 59 85 85 CYS CYS F . n D 3 60 TYR 60 86 86 TYR TYR F . n D 3 61 TYR 61 87 87 TYR TYR F . n D 3 62 LYS 62 88 88 LYS LYS F . n D 3 63 ILE 63 89 89 ILE ILE F . n D 3 64 HIS 64 90 90 HIS HIS F . n D 3 65 THR 65 91 91 THR THR F . n D 3 66 PHE 66 92 92 PHE PHE F . n D 3 67 ARG 67 93 93 ARG ARG F . n D 3 68 ASP 68 94 94 ASP ASP F . n D 3 69 ASP 69 95 95 ASP ASP F . n D 3 70 ASP 70 96 96 ASP ASP F . n D 3 71 GLU 71 97 97 GLU GLU F . n D 3 72 LEU 72 98 98 LEU LEU F . n D 3 73 ARG 73 99 99 ARG ARG F . n D 3 74 LYS 74 100 100 LYS LYS F . n D 3 75 GLY 75 101 101 GLY GLY F . n D 3 76 LYS 76 102 102 LYS LYS F . n D 3 77 GLU 77 103 103 GLU GLU F . n D 3 78 ILE 78 104 104 ILE ILE F . n D 3 79 GLY 79 105 105 GLY GLY F . n D 3 80 PRO 80 106 106 PRO PRO F . n D 3 81 ASN 81 107 107 ASN ASN F . n D 3 82 LEU 82 108 108 LEU LEU F . n D 3 83 LEU 83 109 109 LEU LEU F . n D 3 84 ARG 84 110 110 ARG ARG F . n D 3 85 ALA 85 111 111 ALA ALA F . n D 3 86 ILE 86 112 112 ILE ILE F . n D 3 87 ASP 87 113 113 ASP ASP F . n D 3 88 GLN 88 114 114 GLN GLN F . n D 3 89 SER 89 115 115 SER SER F . n D 3 90 LYS 90 116 116 LYS LYS F . n D 3 91 ILE 91 117 117 ILE ILE F . n D 3 92 TYR 92 118 118 TYR TYR F . n D 3 93 VAL 93 119 119 VAL VAL F . n D 3 94 PRO 94 120 120 PRO PRO F . n D 3 95 ILE 95 121 121 ILE ILE F . n D 3 96 ILE 96 122 122 ILE ILE F . n D 3 97 SER 97 123 123 SER SER F . n D 3 98 SER 98 124 124 SER SER F . n D 3 99 GLY 99 125 125 GLY GLY F . n D 3 100 TYR 100 126 126 TYR TYR F . n D 3 101 ALA 101 127 127 ALA ALA F . n D 3 102 ASP 102 128 128 ASP ASP F . n D 3 103 SER 103 129 129 SER SER F . n D 3 104 LYS 104 130 130 LYS LYS F . n D 3 105 TRP 105 131 131 TRP TRP F . n D 3 106 CYS 106 132 132 CYS CYS F . n D 3 107 LEU 107 133 133 LEU LEU F . n D 3 108 MET 108 134 134 MET MET F . n D 3 109 GLU 109 135 135 GLU GLU F . n D 3 110 LEU 110 136 136 LEU LEU F . n D 3 111 ALA 111 137 137 ALA ALA F . n D 3 112 GLU 112 138 138 GLU GLU F . n D 3 113 ILE 113 139 139 ILE ILE F . n D 3 114 VAL 114 140 140 VAL VAL F . n D 3 115 ARG 115 141 141 ARG ARG F . n D 3 116 ARG 116 142 142 ARG ARG F . n D 3 117 GLN 117 143 143 GLN GLN F . n D 3 118 GLU 118 144 144 GLU GLU F . n D 3 119 GLU 119 145 145 GLU GLU F . n D 3 120 ASP 120 146 146 ASP ASP F . n D 3 121 PRO 121 147 147 PRO PRO F . n D 3 122 ARG 122 148 148 ARG ARG F . n D 3 123 ARG 123 149 149 ARG ARG F . n D 3 124 ILE 124 150 150 ILE ILE F . n D 3 125 ILE 125 151 151 ILE ILE F . n D 3 126 LEU 126 152 152 LEU LEU F . n D 3 127 PRO 127 153 153 PRO PRO F . n D 3 128 ILE 128 154 154 ILE ILE F . n D 3 129 PHE 129 155 155 PHE PHE F . n D 3 130 TYR 130 156 156 TYR TYR F . n D 3 131 MET 131 157 157 MET MET F . n D 3 132 VAL 132 158 158 VAL VAL F . n D 3 133 ASP 133 159 159 ASP ASP F . n D 3 134 PRO 134 160 160 PRO PRO F . n D 3 135 SER 135 161 161 SER SER F . n D 3 136 ASP 136 162 162 ASP ASP F . n D 3 137 VAL 137 163 163 VAL VAL F . n D 3 138 ARG 138 164 164 ARG ARG F . n D 3 139 HIS 139 165 165 HIS HIS F . n D 3 140 GLN 140 166 166 GLN GLN F . n D 3 141 THR 141 167 167 THR THR F . n D 3 142 GLY 142 168 168 GLY GLY F . n D 3 143 CYS 143 169 169 CYS CYS F . n D 3 144 TYR 144 170 170 TYR TYR F . n D 3 145 LYS 145 171 171 LYS LYS F . n D 3 146 LYS 146 172 172 LYS LYS F . n D 3 147 ALA 147 173 173 ALA ALA F . n D 3 148 PHE 148 174 174 PHE PHE F . n D 3 149 ARG 149 175 175 ARG ARG F . n D 3 150 LYS 150 176 176 LYS LYS F . n D 3 151 HIS 151 177 177 HIS HIS F . n D 3 152 ALA 152 178 178 ALA ALA F . n D 3 153 ASN 153 179 179 ASN ASN F . n D 3 154 LYS 154 180 180 LYS LYS F . n D 3 155 PHE 155 181 181 PHE PHE F . n D 3 156 ASP 156 182 182 ASP ASP F . n D 3 157 GLY 157 183 183 GLY GLY F . n D 3 158 GLN 158 184 184 GLN GLN F . n D 3 159 THR 159 185 185 THR THR F . n D 3 160 ILE 160 186 186 ILE ILE F . n D 3 161 GLN 161 187 187 GLN GLN F . n D 3 162 ASN 162 188 188 ASN ASN F . n D 3 163 TRP 163 189 189 TRP TRP F . n D 3 164 LYS 164 190 190 LYS LYS F . n D 3 165 ASP 165 191 191 ASP ASP F . n D 3 166 ALA 166 192 192 ALA ALA F . n D 3 167 LEU 167 193 193 LEU LEU F . n D 3 168 LYS 168 194 194 LYS LYS F . n D 3 169 LYS 169 195 195 LYS LYS F . n D 3 170 VAL 170 196 196 VAL VAL F . n D 3 171 GLY 171 197 197 GLY GLY F . n D 3 172 ASP 172 198 198 ASP ASP F . n D 3 173 LEU 173 199 199 LEU LEU F . n D 3 174 LYS 174 200 200 LYS LYS F . n D 3 175 GLY 175 201 201 GLY GLY F . n D 3 176 TRP 176 202 202 TRP TRP F . n D 3 177 HIS 177 203 203 HIS HIS F . n D 3 178 ILE 178 204 204 ILE ILE F . n D 3 179 GLY 179 205 205 GLY GLY F . n D 3 180 LYS 180 206 206 LYS LYS F . n D 3 181 ASP 181 207 207 ASP ASP F . n D 3 182 ASP 182 208 208 ASP ASP F . n D 3 183 GLU 183 209 209 GLU GLU F . n D 3 184 GLN 184 210 210 GLN GLN F . n D 3 185 GLY 185 211 211 GLY GLY F . n D 3 186 ALA 186 212 212 ALA ALA F . n D 3 187 ILE 187 213 213 ILE ILE F . n D 3 188 ALA 188 214 214 ALA ALA F . n D 3 189 ASP 189 215 215 ASP ASP F . n D 3 190 LYS 190 216 216 LYS LYS F . n D 3 191 VAL 191 217 217 VAL VAL F . n D 3 192 SER 192 218 218 SER SER F . n D 3 193 ALA 193 219 219 ALA ALA F . n D 3 194 ASP 194 220 220 ASP ASP F . n D 3 195 ILE 195 221 221 ILE ILE F . n D 3 196 TRP 196 222 222 TRP TRP F . n D 3 197 SER 197 223 223 SER SER F . n D 3 198 HIS 198 224 224 HIS HIS F . n D 3 199 ILE 199 225 225 ILE ILE F . n D 3 200 SER 200 226 226 SER SER F . n D 3 201 LYS 201 227 227 LYS LYS F . n D 3 202 GLU 202 228 228 GLU GLU F . n D 3 203 ASN 203 229 ? ? ? F . n D 3 204 LEU 204 230 ? ? ? F . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email wubin@ntu.edu.sg _pdbx_contact_author.name_first Bin _pdbx_contact_author.name_last Wu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0883-8006 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ACK 1 301 1 ACK ACK B . F 4 ACK 1 301 1 ACK ACK F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3590 ? 1 MORE -7 ? 1 'SSA (A^2)' 19880 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-01 2 'Structure model' 1 1 2022-06-08 3 'Structure model' 1 2 2022-07-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18rc5_3822: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7X5M _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7X5M _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7X5M _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details 'resolution was estimated based on central segment of the helical density' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 91302 _em_3d_reconstruction.resolution 3.42 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Tir fully digested the bound dsDNA, only ssDNA left.' _em_entity_assembly.name 'Tir-dsDNA, End state complex' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7X5M _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2500 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name METHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7X5M _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7X5M _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 66 ? ? -173.95 141.81 2 1 GLN B 75 ? ? -137.18 -49.77 3 1 LYS B 88 ? ? 62.80 72.81 4 1 LEU B 98 ? ? 52.96 -108.41 5 1 ARG B 99 ? ? 65.38 -17.93 6 1 PRO B 106 ? ? -71.47 42.68 7 1 ASN B 107 ? ? -126.59 -89.14 8 1 SER B 123 ? ? -114.96 -156.09 9 1 MET B 157 ? ? 59.85 -53.05 10 1 GLN B 166 ? ? 55.93 17.08 11 1 GLN B 210 ? ? -71.37 44.71 12 1 SER F 66 ? ? -176.52 130.86 13 1 GLN F 75 ? ? -144.98 -51.89 14 1 LEU F 98 ? ? 58.82 -108.76 15 1 ARG F 99 ? ? 66.99 -24.64 16 1 LYS F 100 ? ? -67.87 68.56 17 1 GLU F 103 ? ? -160.41 119.53 18 1 ASN F 107 ? ? -143.24 -93.04 19 1 SER F 115 ? ? -74.24 -164.96 20 1 LYS F 116 ? ? -155.84 -27.61 21 1 SER F 123 ? ? -91.55 -145.74 22 1 PRO F 147 ? ? -72.45 41.23 23 1 MET F 157 ? ? 59.93 -56.68 24 1 GLN F 166 ? ? 57.01 17.28 25 1 LEU F 199 ? ? -72.53 -166.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DA 7 ? "C5'" ? A DA 5 "C5'" 2 1 Y 1 C DA 7 ? "C4'" ? A DA 5 "C4'" 3 1 Y 1 C DA 7 ? "O4'" ? A DA 5 "O4'" 4 1 Y 1 C DA 7 ? "C3'" ? A DA 5 "C3'" 5 1 Y 1 C DA 7 ? "O3'" ? A DA 5 "O3'" 6 1 Y 1 C DA 7 ? "C2'" ? A DA 5 "C2'" 7 1 Y 1 C DA 7 ? "C1'" ? A DA 5 "C1'" 8 1 Y 1 C DA 7 ? N9 ? A DA 5 N9 9 1 Y 1 C DA 7 ? C8 ? A DA 5 C8 10 1 Y 1 C DA 7 ? N7 ? A DA 5 N7 11 1 Y 1 C DA 7 ? C5 ? A DA 5 C5 12 1 Y 1 C DA 7 ? C6 ? A DA 5 C6 13 1 Y 1 C DA 7 ? N6 ? A DA 5 N6 14 1 Y 1 C DA 7 ? N1 ? A DA 5 N1 15 1 Y 1 C DA 7 ? C2 ? A DA 5 C2 16 1 Y 1 C DA 7 ? N3 ? A DA 5 N3 17 1 Y 1 C DA 7 ? C4 ? A DA 5 C4 18 1 Y 1 E DA 7 ? "C5'" ? B DA 5 "C5'" 19 1 Y 1 E DA 7 ? "C4'" ? B DA 5 "C4'" 20 1 Y 1 E DA 7 ? "O4'" ? B DA 5 "O4'" 21 1 Y 1 E DA 7 ? "C3'" ? B DA 5 "C3'" 22 1 Y 1 E DA 7 ? "O3'" ? B DA 5 "O3'" 23 1 Y 1 E DA 7 ? "C2'" ? B DA 5 "C2'" 24 1 Y 1 E DA 7 ? "C1'" ? B DA 5 "C1'" 25 1 Y 1 E DA 7 ? N9 ? B DA 5 N9 26 1 Y 1 E DA 7 ? C8 ? B DA 5 C8 27 1 Y 1 E DA 7 ? N7 ? B DA 5 N7 28 1 Y 1 E DA 7 ? C5 ? B DA 5 C5 29 1 Y 1 E DA 7 ? C6 ? B DA 5 C6 30 1 Y 1 E DA 7 ? N6 ? B DA 5 N6 31 1 Y 1 E DA 7 ? N1 ? B DA 5 N1 32 1 Y 1 E DA 7 ? C2 ? B DA 5 C2 33 1 Y 1 E DA 7 ? N3 ? B DA 5 N3 34 1 Y 1 E DA 7 ? C4 ? B DA 5 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ASN 27 ? C ASN 1 2 1 Y 1 B SER 28 ? C SER 2 3 1 Y 1 B LYS 29 ? C LYS 3 4 1 Y 1 B ASP 30 ? C ASP 4 5 1 Y 1 B SER 31 ? C SER 5 6 1 Y 1 B ILE 32 ? C ILE 6 7 1 Y 1 B VAL 33 ? C VAL 7 8 1 Y 1 B ASN 34 ? C ASN 8 9 1 Y 1 B ASP 35 ? C ASP 9 10 1 Y 1 B ASP 36 ? C ASP 10 11 1 Y 1 B ASP 37 ? C ASP 11 12 1 Y 1 B ASP 38 ? C ASP 12 13 1 Y 1 B SER 39 ? C SER 13 14 1 Y 1 B THR 40 ? C THR 14 15 1 Y 1 B SER 41 ? C SER 15 16 1 Y 1 B GLU 42 ? C GLU 16 17 1 Y 1 B VAL 43 ? C VAL 17 18 1 Y 1 B ASP 44 ? C ASP 18 19 1 Y 1 B ALA 45 ? C ALA 19 20 1 Y 1 B ILE 46 ? C ILE 20 21 1 Y 1 B PRO 47 ? C PRO 21 22 1 Y 1 B ASP 48 ? C ASP 22 23 1 Y 1 B SER 49 ? C SER 23 24 1 Y 1 B THR 50 ? C THR 24 25 1 Y 1 B ASN 51 ? C ASN 25 26 1 Y 1 B PRO 52 ? C PRO 26 27 1 Y 1 B SER 53 ? C SER 27 28 1 Y 1 B GLY 54 ? C GLY 28 29 1 Y 1 B SER 55 ? C SER 29 30 1 Y 1 B PHE 56 ? C PHE 30 31 1 Y 1 B PRO 57 ? C PRO 31 32 1 Y 1 B SER 58 ? C SER 32 33 1 Y 1 B ASN 229 ? C ASN 203 34 1 Y 1 B LEU 230 ? C LEU 204 35 1 Y 1 F ASN 27 ? D ASN 1 36 1 Y 1 F SER 28 ? D SER 2 37 1 Y 1 F LYS 29 ? D LYS 3 38 1 Y 1 F ASP 30 ? D ASP 4 39 1 Y 1 F SER 31 ? D SER 5 40 1 Y 1 F ILE 32 ? D ILE 6 41 1 Y 1 F VAL 33 ? D VAL 7 42 1 Y 1 F ASN 34 ? D ASN 8 43 1 Y 1 F ASP 35 ? D ASP 9 44 1 Y 1 F ASP 36 ? D ASP 10 45 1 Y 1 F ASP 37 ? D ASP 11 46 1 Y 1 F ASP 38 ? D ASP 12 47 1 Y 1 F SER 39 ? D SER 13 48 1 Y 1 F THR 40 ? D THR 14 49 1 Y 1 F SER 41 ? D SER 15 50 1 Y 1 F GLU 42 ? D GLU 16 51 1 Y 1 F VAL 43 ? D VAL 17 52 1 Y 1 F ASP 44 ? D ASP 18 53 1 Y 1 F ALA 45 ? D ALA 19 54 1 Y 1 F ILE 46 ? D ILE 20 55 1 Y 1 F PRO 47 ? D PRO 21 56 1 Y 1 F ASP 48 ? D ASP 22 57 1 Y 1 F SER 49 ? D SER 23 58 1 Y 1 F THR 50 ? D THR 24 59 1 Y 1 F ASN 51 ? D ASN 25 60 1 Y 1 F PRO 52 ? D PRO 26 61 1 Y 1 F SER 53 ? D SER 27 62 1 Y 1 F GLY 54 ? D GLY 28 63 1 Y 1 F SER 55 ? D SER 29 64 1 Y 1 F PHE 56 ? D PHE 30 65 1 Y 1 F PRO 57 ? D PRO 31 66 1 Y 1 F SER 58 ? D SER 32 67 1 Y 1 F ASN 229 ? D ASN 203 68 1 Y 1 F LEU 230 ? D LEU 204 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 20 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 4006 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Linum usitatissimum' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -49.3 _em_helical_entity.axial_rise_per_subunit 33.43 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Research Foundation (NRF, Singapore)' _pdbx_audit_support.country Singapore _pdbx_audit_support.grant_number OFIRG _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ACK _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ACK _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name ;2',3'- cyclic AMP ; _pdbx_entity_nonpoly.comp_id ACK # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #