data_7LC8 # _entry.id 7LC8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LC8 pdb_00007lc8 10.2210/pdb7lc8/pdb WWPDB D_1000254069 ? ? BMRB 30842 ? 10.13018/BMR30842 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-06-23 2 'Structure model' 1 1 2021-07-14 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 8 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7LC8 _pdbx_database_status.recvd_initial_deposition_date 2021-01-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'SARS-CoV-2 spike Protein TM domain' _pdbx_database_related.db_id 30842 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fu, Q.' 1 0000-0002-7445-2355 'Chou, J.J.' 2 0000-0002-4442-0344 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 143 _citation.language ? _citation.page_first 8543 _citation.page_last 8546 _citation.title 'A Trimeric Hydrophobic Zipper Mediates the Intramembrane Assembly of SARS-CoV-2 Spike.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.1c02394 _citation.pdbx_database_id_PubMed 34086443 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fu, Q.' 1 ? primary 'Chou, J.J.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description ;Spike protein S2' ; _entity.formula_weight 2200.703 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation 'M1229L, M1233L' _entity.pdbx_fragment 'TM domain, residues 1217-1237' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code WLGFIAGLIAIVLVTILLSST _entity_poly.pdbx_seq_one_letter_code_can WLGFIAGLIAIVLVTILLSST _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 LEU n 1 3 GLY n 1 4 PHE n 1 5 ILE n 1 6 ALA n 1 7 GLY n 1 8 LEU n 1 9 ILE n 1 10 ALA n 1 11 ILE n 1 12 VAL n 1 13 LEU n 1 14 VAL n 1 15 THR n 1 16 ILE n 1 17 LEU n 1 18 LEU n 1 19 SER n 1 20 SER n 1 21 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 21 _entity_src_gen.gene_src_common_name 2019-nCoV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'S, 2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1217 1217 TRP TRP A . n A 1 2 LEU 2 1218 1218 LEU LEU A . n A 1 3 GLY 3 1219 1219 GLY GLY A . n A 1 4 PHE 4 1220 1220 PHE PHE A . n A 1 5 ILE 5 1221 1221 ILE ILE A . n A 1 6 ALA 6 1222 1222 ALA ALA A . n A 1 7 GLY 7 1223 1223 GLY GLY A . n A 1 8 LEU 8 1224 1224 LEU LEU A . n A 1 9 ILE 9 1225 1225 ILE ILE A . n A 1 10 ALA 10 1226 1226 ALA ALA A . n A 1 11 ILE 11 1227 1227 ILE ILE A . n A 1 12 VAL 12 1228 1228 VAL VAL A . n A 1 13 LEU 13 1229 1229 LEU LEU A . n A 1 14 VAL 14 1230 1230 VAL VAL A . n A 1 15 THR 15 1231 1231 THR THR A . n A 1 16 ILE 16 1232 1232 ILE ILE A . n A 1 17 LEU 17 1233 1233 LEU LEU A . n A 1 18 LEU 18 1234 1234 LEU LEU A . n A 1 19 SER 19 1235 1235 SER SER A . n A 1 20 SER 20 1236 1236 SER SER A . n A 1 21 THR 21 1237 1237 THR THR A . n B 1 1 TRP 1 1217 1217 TRP TRP B . n B 1 2 LEU 2 1218 1218 LEU LEU B . n B 1 3 GLY 3 1219 1219 GLY GLY B . n B 1 4 PHE 4 1220 1220 PHE PHE B . n B 1 5 ILE 5 1221 1221 ILE ILE B . n B 1 6 ALA 6 1222 1222 ALA ALA B . n B 1 7 GLY 7 1223 1223 GLY GLY B . n B 1 8 LEU 8 1224 1224 LEU LEU B . n B 1 9 ILE 9 1225 1225 ILE ILE B . n B 1 10 ALA 10 1226 1226 ALA ALA B . n B 1 11 ILE 11 1227 1227 ILE ILE B . n B 1 12 VAL 12 1228 1228 VAL VAL B . n B 1 13 LEU 13 1229 1229 LEU LEU B . n B 1 14 VAL 14 1230 1230 VAL VAL B . n B 1 15 THR 15 1231 1231 THR THR B . n B 1 16 ILE 16 1232 1232 ILE ILE B . n B 1 17 LEU 17 1233 1233 LEU LEU B . n B 1 18 LEU 18 1234 1234 LEU LEU B . n B 1 19 SER 19 1235 1235 SER SER B . n B 1 20 SER 20 1236 1236 SER SER B . n B 1 21 THR 21 1237 1237 THR THR B . n C 1 1 TRP 1 1217 1217 TRP TRP C . n C 1 2 LEU 2 1218 1218 LEU LEU C . n C 1 3 GLY 3 1219 1219 GLY GLY C . n C 1 4 PHE 4 1220 1220 PHE PHE C . n C 1 5 ILE 5 1221 1221 ILE ILE C . n C 1 6 ALA 6 1222 1222 ALA ALA C . n C 1 7 GLY 7 1223 1223 GLY GLY C . n C 1 8 LEU 8 1224 1224 LEU LEU C . n C 1 9 ILE 9 1225 1225 ILE ILE C . n C 1 10 ALA 10 1226 1226 ALA ALA C . n C 1 11 ILE 11 1227 1227 ILE ILE C . n C 1 12 VAL 12 1228 1228 VAL VAL C . n C 1 13 LEU 13 1229 1229 LEU LEU C . n C 1 14 VAL 14 1230 1230 VAL VAL C . n C 1 15 THR 15 1231 1231 THR THR C . n C 1 16 ILE 16 1232 1232 ILE ILE C . n C 1 17 LEU 17 1233 1233 LEU LEU C . n C 1 18 LEU 18 1234 1234 LEU LEU C . n C 1 19 SER 19 1235 1235 SER SER C . n C 1 20 SER 20 1236 1236 SER SER C . n C 1 21 THR 21 1237 1237 THR THR C . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LC8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7LC8 _struct.title 'SARS-CoV-2 spike Protein TM domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LC8 _struct_keywords.text 'Coronavirus, SARS, COVID 19, Severe acute respiratory syndrome coronavirus 2, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SPIKE_SARS2 _struct_ref.pdbx_db_accession P0DTC2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code WLGFIAGLIAIVMVTIMLCCM _struct_ref.pdbx_align_begin 1217 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7LC8 A 1 ? 21 ? P0DTC2 1217 ? 1237 ? 1217 1237 2 1 7LC8 B 1 ? 21 ? P0DTC2 1217 ? 1237 ? 1217 1237 3 1 7LC8 C 1 ? 21 ? P0DTC2 1217 ? 1237 ? 1217 1237 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7LC8 LEU A 13 ? UNP P0DTC2 MET 1229 'engineered mutation' 1229 1 1 7LC8 LEU A 17 ? UNP P0DTC2 MET 1233 'engineered mutation' 1233 2 1 7LC8 SER A 19 ? UNP P0DTC2 CYS 1235 conflict 1235 3 1 7LC8 SER A 20 ? UNP P0DTC2 CYS 1236 conflict 1236 4 1 7LC8 THR A 21 ? UNP P0DTC2 MET 1237 conflict 1237 5 2 7LC8 LEU B 13 ? UNP P0DTC2 MET 1229 'engineered mutation' 1229 6 2 7LC8 LEU B 17 ? UNP P0DTC2 MET 1233 'engineered mutation' 1233 7 2 7LC8 SER B 19 ? UNP P0DTC2 CYS 1235 conflict 1235 8 2 7LC8 SER B 20 ? UNP P0DTC2 CYS 1236 conflict 1236 9 2 7LC8 THR B 21 ? UNP P0DTC2 MET 1237 conflict 1237 10 3 7LC8 LEU C 13 ? UNP P0DTC2 MET 1229 'engineered mutation' 1229 11 3 7LC8 LEU C 17 ? UNP P0DTC2 MET 1233 'engineered mutation' 1233 12 3 7LC8 SER C 19 ? UNP P0DTC2 CYS 1235 conflict 1235 13 3 7LC8 SER C 20 ? UNP P0DTC2 CYS 1236 conflict 1236 14 3 7LC8 THR C 21 ? UNP P0DTC2 MET 1237 conflict 1237 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1820 ? 1 MORE -28 ? 1 'SSA (A^2)' 4440 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TRP A 1 ? THR A 21 ? TRP A 1217 THR A 1237 1 ? 21 HELX_P HELX_P2 AA2 LEU B 2 ? SER B 20 ? LEU B 1218 SER B 1236 1 ? 19 HELX_P HELX_P3 AA3 LEU C 2 ? THR C 21 ? LEU C 1218 THR C 1237 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_nmr_ensemble.entry_id 7LC8 _pdbx_nmr_ensemble.conformers_calculated_total_number 150 _pdbx_nmr_ensemble.conformers_submitted_total_number 14 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7LC8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 3 ;55 mM [U-99% 2H] 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM [U-99% 2H] 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-13C; U-15N] Spike glycoprotein, 90% H2O/10% D2O ; '90% H2O/10% D2O' '15N 13C' bicelle ? 4 ;55 mM [U-99% 2H] 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM [U-99% 2H] 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-13C; U-15N; U-2H] Spike glycoprotein, 90% H2O/10% D2O ; '90% H2O/10% D2O' 'mixed(15N, 2H | 13C)' bicelle ? 5 ;55 mM 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-15N; U-2H] Spike glycoprotein, 90% H2O/10% D2O ; '90% H2O/10% D2O' '15N 2H' bicelle ? 6 ;55 mM 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-13C; U-15N; U-2H] Spike glycoprotein, 90% H2O/10% D2O ; '90% H2O/10% D2O' '15N 13C 2H' bicelle ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 3 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine 55 ? mM '[U-99% 2H]' 3 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine 100 ? mM '[U-99% 2H]' 3 TRIS 20 ? mM 'natural abundance' 3 'sodium azide' 0.02 ? % 'natural abundance' 3 'sodium chloride' 20 ? mM 'natural abundance' 3 'Spike glycoprotein' 1 ? mM '[U-13C; U-15N]' 4 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine 55 ? mM '[U-99% 2H]' 4 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine 100 ? mM '[U-99% 2H]' 4 TRIS 20 ? mM 'natural abundance' 4 'sodium azide' 0.02 ? % 'natural abundance' 4 'sodium chloride' 20 ? mM 'natural abundance' 4 'Spike glycoprotein' 1 ? mM '[U-13C; U-15N; U-2H]' 5 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine 55 ? mM 'natural abundance' 5 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine 100 ? mM 'natural abundance' 5 TRIS 20 ? mM 'natural abundance' 5 'sodium azide' 0.02 ? % 'natural abundance' 5 'sodium chloride' 20 ? mM 'natural abundance' 5 'Spike glycoprotein' 1 ? mM '[U-15N; U-2H]' 6 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine 55 ? mM 'natural abundance' 6 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine 100 ? mM 'natural abundance' 6 TRIS 20 ? mM 'natural abundance' 6 'sodium azide' 0.02 ? % 'natural abundance' 6 'sodium chloride' 20 ? mM 'natural abundance' 6 'Spike glycoprotein' 1 ? mM '[U-13C; U-15N; U-2H]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label q-0.55 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 6 '2D 1H-15N HSQC' 1 isotropic 2 1 6 '3D HNCA' 2 isotropic 3 1 6 '3D HNCO' 2 isotropic 4 1 3 '3D 1H-15N NOESY' 2 isotropic 5 1 4 '3D HNCO' 2 isotropic 6 1 5 '2D 1H-15N HSQC NH2 only' 1 isotropic # _pdbx_nmr_refine.entry_id 7LC8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' 2.48 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'X-PLOR NIH' 2.48 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' XEASY ? 'Bartels et al.' 4 'peak picking' XEASY ? 'Bartels et al.' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 CYS N N N N 14 CYS CA C N R 15 CYS C C N N 16 CYS O O N N 17 CYS CB C N N 18 CYS SG S N N 19 CYS OXT O N N 20 CYS H H N N 21 CYS H2 H N N 22 CYS HA H N N 23 CYS HB2 H N N 24 CYS HB3 H N N 25 CYS HG H N N 26 CYS HXT H N N 27 GLY N N N N 28 GLY CA C N N 29 GLY C C N N 30 GLY O O N N 31 GLY OXT O N N 32 GLY H H N N 33 GLY H2 H N N 34 GLY HA2 H N N 35 GLY HA3 H N N 36 GLY HXT H N N 37 ILE N N N N 38 ILE CA C N S 39 ILE C C N N 40 ILE O O N N 41 ILE CB C N S 42 ILE CG1 C N N 43 ILE CG2 C N N 44 ILE CD1 C N N 45 ILE OXT O N N 46 ILE H H N N 47 ILE H2 H N N 48 ILE HA H N N 49 ILE HB H N N 50 ILE HG12 H N N 51 ILE HG13 H N N 52 ILE HG21 H N N 53 ILE HG22 H N N 54 ILE HG23 H N N 55 ILE HD11 H N N 56 ILE HD12 H N N 57 ILE HD13 H N N 58 ILE HXT H N N 59 LEU N N N N 60 LEU CA C N S 61 LEU C C N N 62 LEU O O N N 63 LEU CB C N N 64 LEU CG C N N 65 LEU CD1 C N N 66 LEU CD2 C N N 67 LEU OXT O N N 68 LEU H H N N 69 LEU H2 H N N 70 LEU HA H N N 71 LEU HB2 H N N 72 LEU HB3 H N N 73 LEU HG H N N 74 LEU HD11 H N N 75 LEU HD12 H N N 76 LEU HD13 H N N 77 LEU HD21 H N N 78 LEU HD22 H N N 79 LEU HD23 H N N 80 LEU HXT H N N 81 MET N N N N 82 MET CA C N S 83 MET C C N N 84 MET O O N N 85 MET CB C N N 86 MET CG C N N 87 MET SD S N N 88 MET CE C N N 89 MET OXT O N N 90 MET H H N N 91 MET H2 H N N 92 MET HA H N N 93 MET HB2 H N N 94 MET HB3 H N N 95 MET HG2 H N N 96 MET HG3 H N N 97 MET HE1 H N N 98 MET HE2 H N N 99 MET HE3 H N N 100 MET HXT H N N 101 PHE N N N N 102 PHE CA C N S 103 PHE C C N N 104 PHE O O N N 105 PHE CB C N N 106 PHE CG C Y N 107 PHE CD1 C Y N 108 PHE CD2 C Y N 109 PHE CE1 C Y N 110 PHE CE2 C Y N 111 PHE CZ C Y N 112 PHE OXT O N N 113 PHE H H N N 114 PHE H2 H N N 115 PHE HA H N N 116 PHE HB2 H N N 117 PHE HB3 H N N 118 PHE HD1 H N N 119 PHE HD2 H N N 120 PHE HE1 H N N 121 PHE HE2 H N N 122 PHE HZ H N N 123 PHE HXT H N N 124 SER N N N N 125 SER CA C N S 126 SER C C N N 127 SER O O N N 128 SER CB C N N 129 SER OG O N N 130 SER OXT O N N 131 SER H H N N 132 SER H2 H N N 133 SER HA H N N 134 SER HB2 H N N 135 SER HB3 H N N 136 SER HG H N N 137 SER HXT H N N 138 THR N N N N 139 THR CA C N S 140 THR C C N N 141 THR O O N N 142 THR CB C N R 143 THR OG1 O N N 144 THR CG2 C N N 145 THR OXT O N N 146 THR H H N N 147 THR H2 H N N 148 THR HA H N N 149 THR HB H N N 150 THR HG1 H N N 151 THR HG21 H N N 152 THR HG22 H N N 153 THR HG23 H N N 154 THR HXT H N N 155 TRP N N N N 156 TRP CA C N S 157 TRP C C N N 158 TRP O O N N 159 TRP CB C N N 160 TRP CG C Y N 161 TRP CD1 C Y N 162 TRP CD2 C Y N 163 TRP NE1 N Y N 164 TRP CE2 C Y N 165 TRP CE3 C Y N 166 TRP CZ2 C Y N 167 TRP CZ3 C Y N 168 TRP CH2 C Y N 169 TRP OXT O N N 170 TRP H H N N 171 TRP H2 H N N 172 TRP HA H N N 173 TRP HB2 H N N 174 TRP HB3 H N N 175 TRP HD1 H N N 176 TRP HE1 H N N 177 TRP HE3 H N N 178 TRP HZ2 H N N 179 TRP HZ3 H N N 180 TRP HH2 H N N 181 TRP HXT H N N 182 VAL N N N N 183 VAL CA C N S 184 VAL C C N N 185 VAL O O N N 186 VAL CB C N N 187 VAL CG1 C N N 188 VAL CG2 C N N 189 VAL OXT O N N 190 VAL H H N N 191 VAL H2 H N N 192 VAL HA H N N 193 VAL HB H N N 194 VAL HG11 H N N 195 VAL HG12 H N N 196 VAL HG13 H N N 197 VAL HG21 H N N 198 VAL HG22 H N N 199 VAL HG23 H N N 200 VAL HXT H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 CYS N CA sing N N 13 CYS N H sing N N 14 CYS N H2 sing N N 15 CYS CA C sing N N 16 CYS CA CB sing N N 17 CYS CA HA sing N N 18 CYS C O doub N N 19 CYS C OXT sing N N 20 CYS CB SG sing N N 21 CYS CB HB2 sing N N 22 CYS CB HB3 sing N N 23 CYS SG HG sing N N 24 CYS OXT HXT sing N N 25 GLY N CA sing N N 26 GLY N H sing N N 27 GLY N H2 sing N N 28 GLY CA C sing N N 29 GLY CA HA2 sing N N 30 GLY CA HA3 sing N N 31 GLY C O doub N N 32 GLY C OXT sing N N 33 GLY OXT HXT sing N N 34 ILE N CA sing N N 35 ILE N H sing N N 36 ILE N H2 sing N N 37 ILE CA C sing N N 38 ILE CA CB sing N N 39 ILE CA HA sing N N 40 ILE C O doub N N 41 ILE C OXT sing N N 42 ILE CB CG1 sing N N 43 ILE CB CG2 sing N N 44 ILE CB HB sing N N 45 ILE CG1 CD1 sing N N 46 ILE CG1 HG12 sing N N 47 ILE CG1 HG13 sing N N 48 ILE CG2 HG21 sing N N 49 ILE CG2 HG22 sing N N 50 ILE CG2 HG23 sing N N 51 ILE CD1 HD11 sing N N 52 ILE CD1 HD12 sing N N 53 ILE CD1 HD13 sing N N 54 ILE OXT HXT sing N N 55 LEU N CA sing N N 56 LEU N H sing N N 57 LEU N H2 sing N N 58 LEU CA C sing N N 59 LEU CA CB sing N N 60 LEU CA HA sing N N 61 LEU C O doub N N 62 LEU C OXT sing N N 63 LEU CB CG sing N N 64 LEU CB HB2 sing N N 65 LEU CB HB3 sing N N 66 LEU CG CD1 sing N N 67 LEU CG CD2 sing N N 68 LEU CG HG sing N N 69 LEU CD1 HD11 sing N N 70 LEU CD1 HD12 sing N N 71 LEU CD1 HD13 sing N N 72 LEU CD2 HD21 sing N N 73 LEU CD2 HD22 sing N N 74 LEU CD2 HD23 sing N N 75 LEU OXT HXT sing N N 76 MET N CA sing N N 77 MET N H sing N N 78 MET N H2 sing N N 79 MET CA C sing N N 80 MET CA CB sing N N 81 MET CA HA sing N N 82 MET C O doub N N 83 MET C OXT sing N N 84 MET CB CG sing N N 85 MET CB HB2 sing N N 86 MET CB HB3 sing N N 87 MET CG SD sing N N 88 MET CG HG2 sing N N 89 MET CG HG3 sing N N 90 MET SD CE sing N N 91 MET CE HE1 sing N N 92 MET CE HE2 sing N N 93 MET CE HE3 sing N N 94 MET OXT HXT sing N N 95 PHE N CA sing N N 96 PHE N H sing N N 97 PHE N H2 sing N N 98 PHE CA C sing N N 99 PHE CA CB sing N N 100 PHE CA HA sing N N 101 PHE C O doub N N 102 PHE C OXT sing N N 103 PHE CB CG sing N N 104 PHE CB HB2 sing N N 105 PHE CB HB3 sing N N 106 PHE CG CD1 doub Y N 107 PHE CG CD2 sing Y N 108 PHE CD1 CE1 sing Y N 109 PHE CD1 HD1 sing N N 110 PHE CD2 CE2 doub Y N 111 PHE CD2 HD2 sing N N 112 PHE CE1 CZ doub Y N 113 PHE CE1 HE1 sing N N 114 PHE CE2 CZ sing Y N 115 PHE CE2 HE2 sing N N 116 PHE CZ HZ sing N N 117 PHE OXT HXT sing N N 118 SER N CA sing N N 119 SER N H sing N N 120 SER N H2 sing N N 121 SER CA C sing N N 122 SER CA CB sing N N 123 SER CA HA sing N N 124 SER C O doub N N 125 SER C OXT sing N N 126 SER CB OG sing N N 127 SER CB HB2 sing N N 128 SER CB HB3 sing N N 129 SER OG HG sing N N 130 SER OXT HXT sing N N 131 THR N CA sing N N 132 THR N H sing N N 133 THR N H2 sing N N 134 THR CA C sing N N 135 THR CA CB sing N N 136 THR CA HA sing N N 137 THR C O doub N N 138 THR C OXT sing N N 139 THR CB OG1 sing N N 140 THR CB CG2 sing N N 141 THR CB HB sing N N 142 THR OG1 HG1 sing N N 143 THR CG2 HG21 sing N N 144 THR CG2 HG22 sing N N 145 THR CG2 HG23 sing N N 146 THR OXT HXT sing N N 147 TRP N CA sing N N 148 TRP N H sing N N 149 TRP N H2 sing N N 150 TRP CA C sing N N 151 TRP CA CB sing N N 152 TRP CA HA sing N N 153 TRP C O doub N N 154 TRP C OXT sing N N 155 TRP CB CG sing N N 156 TRP CB HB2 sing N N 157 TRP CB HB3 sing N N 158 TRP CG CD1 doub Y N 159 TRP CG CD2 sing Y N 160 TRP CD1 NE1 sing Y N 161 TRP CD1 HD1 sing N N 162 TRP CD2 CE2 doub Y N 163 TRP CD2 CE3 sing Y N 164 TRP NE1 CE2 sing Y N 165 TRP NE1 HE1 sing N N 166 TRP CE2 CZ2 sing Y N 167 TRP CE3 CZ3 doub Y N 168 TRP CE3 HE3 sing N N 169 TRP CZ2 CH2 doub Y N 170 TRP CZ2 HZ2 sing N N 171 TRP CZ3 CH2 sing Y N 172 TRP CZ3 HZ3 sing N N 173 TRP CH2 HH2 sing N N 174 TRP OXT HXT sing N N 175 VAL N CA sing N N 176 VAL N H sing N N 177 VAL N H2 sing N N 178 VAL CA C sing N N 179 VAL CA CB sing N N 180 VAL CA HA sing N N 181 VAL C O doub N N 182 VAL C OXT sing N N 183 VAL CB CG1 sing N N 184 VAL CB CG2 sing N N 185 VAL CB HB sing N N 186 VAL CG1 HG11 sing N N 187 VAL CG1 HG12 sing N N 188 VAL CG1 HG13 sing N N 189 VAL CG2 HG21 sing N N 190 VAL CG2 HG22 sing N N 191 VAL CG2 HG23 sing N N 192 VAL OXT HXT sing N N 193 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AI127193 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 ? 2 AVANCE ? Bruker 700 ? # _atom_sites.entry_id 7LC8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_