data_7WKF # _entry.id 7WKF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WKF pdb_00007wkf 10.2210/pdb7wkf/pdb WWPDB D_1300026838 ? ? BMRB 36469 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Antimicrobial peptide-LaIT2' _pdbx_database_related.db_id 36469 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7WKF _pdbx_database_status.recvd_initial_deposition_date 2022-01-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category CAPRI _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tamura, M.' 1 ? 'Morita, H.' 2 ? 'Ohki, S.' 3 0000-0002-5497-7277 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary Toxicon TOXIA6 2043 0041-0101 ? ? 214 ? 8 17 'Structural and functional studies of LaIT2, an antimicrobial and insecticidal peptide from Liocheles australasiae.' 2022 ? 10.1016/j.toxicon.2022.04.015 35490851 ? ? ? ? ? ? ? ? ? JA ? ? 1 'Biosci. Biotechnol. Biochem' BBBIEJ 2094 0916-8451 ? ? 73 ? 2769 2772 'Purification and cDNA cloning of LaIT2, a novel insecticidal toxin from venom of the scorpion Liocheles australasiae' 2009 ? ? ? ? ? ? ? ? ? ? ? ? UK ? ? 2 'J. Pept. Sci' JPSIEI 1225 1075-2617 ? ? 24 ? e3133 ? ;Chemical synthesis of a two-domain scorpion toxin LaIT2 and its single-domain analogs to elucidate structural factors important for insecticidal and antimicrobial activities ; 2018 ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tamura, M.' 1 ? primary 'Tatsushiro, C.' 2 ? primary 'Morita, E.H.' 3 ? primary 'Ohki, S.' 4 ? 1 'Matsushita, M.N.' 5 ? 1 'Miyashita, M.M.' 6 0000-0001-7050-5555 1 'Ichiki, I.Y.' 7 ? 1 'Ogura, O.T.' 8 ? 1 'Sakuradani, S.E.' 9 ? 1 'Nakagawa, N.Y.' 10 ? 1 'Shimizu, S.S.' 11 ? 1 'Miyagawa, M.H.' 12 ? 2 'Juichi, H.J.' 13 ? 2 'Ando, A.R.' 14 ? 2 'Ishido, I.T.' 15 ? 2 'Miyashita, M.M.' 16 0000-0001-7050-5555 2 'Ogura, O.T.' 17 ? 2 'Sakuradani, S.E.' 18 ? 2 'Nakagawa, N.Y.' 19 ? 2 'Miyagawa, M.H.' 20 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Beta-KTx-like peptide LaIT2' _entity.formula_weight 6650.886 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AKKPFVQRVKNAASKAYNKLKGLAMQSQYGCPIISNMCEDHCRRKKMEGQCDLLDCVCS _entity_poly.pdbx_seq_one_letter_code_can AKKPFVQRVKNAASKAYNKLKGLAMQSQYGCPIISNMCEDHCRRKKMEGQCDLLDCVCS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 LYS n 1 4 PRO n 1 5 PHE n 1 6 VAL n 1 7 GLN n 1 8 ARG n 1 9 VAL n 1 10 LYS n 1 11 ASN n 1 12 ALA n 1 13 ALA n 1 14 SER n 1 15 LYS n 1 16 ALA n 1 17 TYR n 1 18 ASN n 1 19 LYS n 1 20 LEU n 1 21 LYS n 1 22 GLY n 1 23 LEU n 1 24 ALA n 1 25 MET n 1 26 GLN n 1 27 SER n 1 28 GLN n 1 29 TYR n 1 30 GLY n 1 31 CYS n 1 32 PRO n 1 33 ILE n 1 34 ILE n 1 35 SER n 1 36 ASN n 1 37 MET n 1 38 CYS n 1 39 GLU n 1 40 ASP n 1 41 HIS n 1 42 CYS n 1 43 ARG n 1 44 ARG n 1 45 LYS n 1 46 LYS n 1 47 MET n 1 48 GLU n 1 49 GLY n 1 50 GLN n 1 51 CYS n 1 52 ASP n 1 53 LEU n 1 54 LEU n 1 55 ASP n 1 56 CYS n 1 57 VAL n 1 58 CYS n 1 59 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 59 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Liocheles australasiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 431266 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-mod _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KBX2_LIOAU _struct_ref.pdbx_db_accession C7G3K3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AKKPFVQRVKNAASKAYNKLKGLAMQSQYGCPIISNMCEDHCRRKKMEGQCDLLDCVCS _struct_ref.pdbx_align_begin 22 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7WKF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 59 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C7G3K3 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 80 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 59 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 2 '2D 1H-15N HSQC' 1 isotropic 2 1 2 '2D NOESY' 1 isotropic 3 1 2 '3D CBCA(CO)NH' 1 isotropic 4 1 2 '3D 1H-15N NOESY' 1 isotropic 5 1 2 '3D 1H-13C NOESY' 1 isotropic 6 1 2 '3D HNCA' 1 isotropic 9 1 2 '3D HNCACB' 1 isotropic 8 1 2 '3D HCCH-TOCSY' 1 isotropic 7 1 2 '3D 1H-15N TOCSY' 1 isotropic 13 1 2 '3D C(CO)NH' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure 1.013 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label LaIT2 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.2 mM 15N LaIT2, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_LaIT2 solution ? 2 '0.2 mM 13C LaIT2, 95% H2O/5% D2O' '95% H2O/5% D2O' 13C_LaIT2 solution ? 3 '0.2 mM 13C/15N LaIT2, 95% H2O/5% D2O' '95% H2O/5% D2O' 13C/15N_LaIT2 solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7WKF _pdbx_nmr_refine.method 'simulaed annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 7WKF _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7WKF _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement PONDEROSA ? 'Woonghee Lee' 2 'data analysis' MolProbity ? Richardson 4 'data analysis' 'PROCHECK / PROCHECK-NMR' ? 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton' 3 'peak picking' Sparky ? Goddard 5 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 6 'data analysis' NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 7 'chemical shift assignment' Sparky ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WKF _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7WKF _struct.title 'Antimicrobial peptide-LaIT2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WKF _struct_keywords.text 'CYANA 2.1 Scorpion Antimicrobial peptide, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 35 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 45 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 35 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 45 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 31 A CYS 51 1_555 ? ? ? ? ? ? ? 1.985 ? ? disulf2 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 56 SG ? ? A CYS 38 A CYS 56 1_555 ? ? ? ? ? ? ? 1.955 ? ? disulf3 disulf ? ? A CYS 42 SG ? ? ? 1_555 A CYS 58 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 1.995 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 49 ? ASP A 52 ? GLY A 49 ASP A 52 AA1 2 ASP A 55 ? CYS A 58 ? ASP A 55 CYS A 58 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLN _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 50 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLN _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 50 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 57 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 57 # _atom_sites.entry_id 7WKF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 MET 47 47 47 MET MET A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 SER 59 59 59 SER SER A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 shinya-o@jaist.ac.jp Shinya Ohki ? 'principal investigator/group leader' 0000-0002-5497-7277 3 s1920020@jaist.ac.jp Maiki Tamura ? 'principal investigator/group leader' 0000-0003-1695-0951 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-04-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_entry_details.entry_id 7WKF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 LaIT2 0.2 ? mM 15N 2 LaIT2 0.2 ? mM 13C 3 LaIT2 0.2 ? mM 13C/15N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 4 ? ? -69.77 -171.91 2 1 VAL A 6 ? ? -173.09 137.53 3 1 GLN A 7 ? ? -171.23 64.06 4 1 VAL A 9 ? ? -140.02 45.26 5 1 ASN A 11 ? ? -162.27 -69.26 6 1 ALA A 12 ? ? 61.07 100.94 7 1 ALA A 13 ? ? -162.39 112.19 8 1 SER A 14 ? ? -165.57 67.40 9 1 LYS A 15 ? ? -171.59 116.16 10 1 ALA A 16 ? ? -165.99 32.44 11 1 LYS A 19 ? ? -156.47 -68.69 12 1 MET A 25 ? ? 58.13 92.78 13 1 GLN A 26 ? ? -179.18 -35.19 14 1 ASP A 55 ? ? 174.43 178.90 15 2 LYS A 3 ? ? -156.41 68.89 16 2 PRO A 4 ? ? -69.71 -176.18 17 2 PHE A 5 ? ? -165.72 56.23 18 2 GLN A 7 ? ? -174.80 122.07 19 2 ARG A 8 ? ? -172.91 108.93 20 2 VAL A 9 ? ? -144.34 36.09 21 2 ALA A 12 ? ? -168.80 104.31 22 2 ALA A 16 ? ? -164.04 71.28 23 2 ASN A 18 ? ? -174.18 77.10 24 2 LYS A 19 ? ? -176.02 68.19 25 2 MET A 25 ? ? 51.86 87.27 26 2 GLN A 26 ? ? -168.30 -53.58 27 2 ILE A 33 ? ? -151.01 88.40 28 2 ASP A 55 ? ? 174.86 176.93 29 3 PRO A 4 ? ? -69.76 -176.43 30 3 GLN A 7 ? ? -172.22 95.46 31 3 ASN A 11 ? ? -171.69 110.56 32 3 ALA A 12 ? ? -166.99 109.69 33 3 LYS A 15 ? ? -162.14 107.50 34 3 ALA A 16 ? ? -160.72 81.95 35 3 LYS A 19 ? ? -93.88 -73.07 36 3 MET A 25 ? ? 52.94 86.92 37 3 GLN A 26 ? ? -176.50 -36.38 38 3 SER A 27 ? ? -98.49 31.95 39 3 ASP A 55 ? ? 175.29 178.48 40 4 PRO A 4 ? ? -69.81 -176.56 41 4 PHE A 5 ? ? -172.20 148.68 42 4 GLN A 7 ? ? -176.48 124.27 43 4 ASN A 11 ? ? 58.69 93.38 44 4 ALA A 12 ? ? -174.22 103.95 45 4 ALA A 13 ? ? -171.05 95.58 46 4 SER A 14 ? ? -157.76 39.74 47 4 ALA A 16 ? ? -172.20 83.78 48 4 ASN A 18 ? ? 66.28 144.41 49 4 LYS A 19 ? ? -158.25 -65.76 50 4 GLN A 26 ? ? -179.33 -74.72 51 4 ASP A 55 ? ? 173.66 -178.68 52 5 PRO A 4 ? ? -69.74 -171.49 53 5 GLN A 7 ? ? -174.10 78.96 54 5 VAL A 9 ? ? -175.84 135.23 55 5 ASN A 11 ? ? -178.77 114.82 56 5 ALA A 13 ? ? 58.99 94.55 57 5 SER A 14 ? ? -151.66 50.59 58 5 LYS A 15 ? ? -167.56 97.74 59 5 ALA A 16 ? ? -167.93 39.21 60 5 TYR A 17 ? ? -98.29 33.36 61 5 LEU A 23 ? ? -118.28 -169.99 62 5 ASP A 55 ? ? 174.76 176.70 63 6 PRO A 4 ? ? -69.86 -171.25 64 6 PHE A 5 ? ? -147.45 47.94 65 6 GLN A 7 ? ? -173.51 122.45 66 6 ASN A 11 ? ? -169.94 82.50 67 6 ALA A 13 ? ? -178.06 -173.61 68 6 LYS A 15 ? ? -170.81 100.82 69 6 ALA A 16 ? ? -167.17 78.77 70 6 ASN A 18 ? ? -162.83 113.96 71 6 LYS A 19 ? ? -119.70 -72.72 72 6 LEU A 20 ? ? 60.97 175.28 73 6 LEU A 23 ? ? 52.06 -169.87 74 6 MET A 25 ? ? 51.93 79.74 75 6 GLN A 26 ? ? -179.13 -60.87 76 6 SER A 27 ? ? -69.48 85.59 77 6 ASP A 55 ? ? 172.79 -175.27 78 7 LYS A 3 ? ? -118.63 71.92 79 7 PRO A 4 ? ? -69.79 -173.97 80 7 ALA A 13 ? ? -165.17 34.62 81 7 ASN A 18 ? ? -172.27 124.55 82 7 LYS A 19 ? ? -155.80 79.48 83 7 LEU A 20 ? ? -150.11 44.80 84 7 LEU A 23 ? ? 63.09 161.84 85 7 ALA A 24 ? ? -140.15 20.34 86 7 SER A 27 ? ? -100.44 65.38 87 7 ILE A 33 ? ? -151.03 89.96 88 7 ASP A 55 ? ? 175.55 175.63 89 8 PRO A 4 ? ? -69.77 -173.51 90 8 LYS A 10 ? ? -164.92 97.66 91 8 ASN A 11 ? ? -176.76 97.32 92 8 ALA A 13 ? ? -170.58 78.12 93 8 LYS A 15 ? ? -163.60 103.41 94 8 ALA A 16 ? ? -170.46 69.25 95 8 TYR A 17 ? ? -116.13 63.49 96 8 ASP A 55 ? ? 174.26 177.77 97 9 PRO A 4 ? ? -69.74 -178.94 98 9 GLN A 7 ? ? -173.95 80.86 99 9 ASN A 11 ? ? -167.45 111.67 100 9 ALA A 12 ? ? -170.84 125.83 101 9 ALA A 13 ? ? -173.44 132.42 102 9 LYS A 15 ? ? -161.81 113.20 103 9 ALA A 16 ? ? -172.34 80.63 104 9 ASN A 18 ? ? -173.45 134.12 105 9 LEU A 20 ? ? 61.56 98.50 106 9 LEU A 23 ? ? -63.62 -176.61 107 9 ILE A 33 ? ? -151.02 89.99 108 9 ASP A 55 ? ? 174.33 -178.99 109 10 PRO A 4 ? ? -69.79 -172.65 110 10 PHE A 5 ? ? -175.59 113.74 111 10 GLN A 7 ? ? -176.28 107.53 112 10 ASN A 11 ? ? -157.07 -61.56 113 10 ALA A 12 ? ? 63.75 106.28 114 10 ALA A 13 ? ? -172.23 93.66 115 10 SER A 14 ? ? -163.65 70.40 116 10 LYS A 15 ? ? -163.59 108.88 117 10 ALA A 16 ? ? -170.44 33.99 118 10 ASN A 18 ? ? -166.14 79.93 119 10 MET A 25 ? ? 54.23 90.61 120 10 GLN A 26 ? ? -177.48 -39.65 121 10 ASP A 55 ? ? 172.49 -174.44 122 11 LYS A 2 ? ? 60.26 86.21 123 11 PRO A 4 ? ? -69.69 -176.27 124 11 PHE A 5 ? ? -160.69 51.12 125 11 ASN A 11 ? ? -169.65 107.93 126 11 ASN A 18 ? ? 57.07 84.48 127 11 LYS A 19 ? ? -143.51 33.60 128 11 GLN A 26 ? ? -130.25 -40.63 129 11 SER A 27 ? ? -96.88 32.54 130 11 ASP A 55 ? ? 175.44 175.70 131 12 LYS A 3 ? ? 59.72 72.71 132 12 PRO A 4 ? ? -69.81 -172.82 133 12 ARG A 8 ? ? -170.94 121.14 134 12 ALA A 12 ? ? -178.57 138.90 135 12 SER A 14 ? ? -173.24 111.10 136 12 LYS A 15 ? ? -166.94 114.53 137 12 TYR A 17 ? ? 61.42 168.14 138 12 ASN A 18 ? ? -161.79 117.64 139 12 LYS A 19 ? ? -162.39 -70.21 140 12 ASP A 55 ? ? 175.24 178.47 141 13 LYS A 3 ? ? -119.69 69.80 142 13 PRO A 4 ? ? -69.75 -179.37 143 13 PHE A 5 ? ? 60.66 172.02 144 13 LYS A 10 ? ? 56.24 92.52 145 13 ALA A 16 ? ? 57.00 83.97 146 13 ASN A 18 ? ? -170.08 129.06 147 13 ALA A 24 ? ? -142.88 31.51 148 13 MET A 25 ? ? 54.49 85.06 149 13 GLN A 26 ? ? -171.26 -38.25 150 13 ASP A 55 ? ? 174.45 177.50 151 14 PRO A 4 ? ? -69.75 -179.08 152 14 ARG A 8 ? ? -164.97 108.22 153 14 VAL A 9 ? ? -174.34 145.41 154 14 ASN A 11 ? ? -178.44 93.66 155 14 ALA A 12 ? ? -171.34 132.33 156 14 ALA A 13 ? ? -162.65 74.77 157 14 SER A 14 ? ? -160.60 83.89 158 14 ALA A 16 ? ? -151.13 73.16 159 14 LYS A 21 ? ? 58.26 80.64 160 14 MET A 25 ? ? 53.92 89.36 161 14 GLN A 26 ? ? -177.16 -45.53 162 14 SER A 27 ? ? -101.15 47.24 163 14 ASP A 55 ? ? 175.47 179.21 164 15 PRO A 4 ? ? -69.77 -176.18 165 15 VAL A 6 ? ? -172.32 139.24 166 15 GLN A 7 ? ? -119.73 69.50 167 15 ASN A 11 ? ? -164.26 98.19 168 15 LYS A 15 ? ? -160.79 94.31 169 15 ALA A 16 ? ? -155.75 56.53 170 15 ASN A 18 ? ? 58.41 80.53 171 15 LYS A 21 ? ? -155.92 29.20 172 15 SER A 27 ? ? -110.17 63.84 173 15 ILE A 33 ? ? -151.06 89.77 174 15 ASP A 55 ? ? 174.78 -178.84 175 16 PRO A 4 ? ? -69.81 -178.53 176 16 ARG A 8 ? ? -165.98 99.82 177 16 ASN A 11 ? ? -164.98 99.82 178 16 ALA A 12 ? ? -170.87 119.00 179 16 SER A 14 ? ? -179.26 138.52 180 16 LYS A 15 ? ? -160.47 47.00 181 16 ALA A 16 ? ? -108.78 41.32 182 16 ASN A 18 ? ? -165.61 114.71 183 16 LYS A 19 ? ? -155.52 79.76 184 16 LYS A 21 ? ? 62.55 163.85 185 16 MET A 25 ? ? 56.81 93.74 186 16 GLN A 26 ? ? -174.93 -36.27 187 16 ASP A 55 ? ? 175.05 179.69 188 17 PRO A 4 ? ? -69.76 -176.10 189 17 PHE A 5 ? ? 61.20 96.49 190 17 ARG A 8 ? ? -175.42 139.65 191 17 ALA A 12 ? ? -178.46 146.41 192 17 LYS A 15 ? ? -172.37 108.60 193 17 ALA A 16 ? ? -171.40 91.24 194 17 LYS A 19 ? ? -158.50 -57.64 195 17 LEU A 20 ? ? 55.09 75.52 196 17 ALA A 24 ? ? -152.77 23.61 197 17 ASP A 55 ? ? 174.35 178.89 198 18 LYS A 3 ? ? -171.85 72.54 199 18 GLN A 7 ? ? -172.98 108.22 200 18 ARG A 8 ? ? -160.25 117.17 201 18 LYS A 10 ? ? -176.74 116.10 202 18 ASN A 11 ? ? -161.92 102.94 203 18 LYS A 15 ? ? -109.10 68.73 204 18 LYS A 19 ? ? -175.51 88.73 205 18 LYS A 21 ? ? -174.41 -173.18 206 18 GLN A 26 ? ? -132.80 -49.12 207 18 SER A 27 ? ? -92.82 44.81 208 18 ILE A 33 ? ? -151.00 89.90 209 18 ASP A 55 ? ? 175.22 178.90 210 19 LYS A 3 ? ? 56.83 73.02 211 19 PRO A 4 ? ? -69.82 -172.68 212 19 PHE A 5 ? ? 63.12 96.97 213 19 LYS A 10 ? ? -56.69 175.93 214 19 SER A 14 ? ? -148.81 -73.86 215 19 LYS A 15 ? ? 56.94 88.43 216 19 ALA A 16 ? ? -135.09 -77.85 217 19 TYR A 17 ? ? -100.48 48.14 218 19 ASN A 18 ? ? 58.93 96.95 219 19 LEU A 23 ? ? 56.01 -173.03 220 19 ALA A 24 ? ? -142.31 40.11 221 19 ASP A 55 ? ? 174.93 176.32 222 20 PRO A 4 ? ? -69.73 -173.96 223 20 ARG A 8 ? ? -158.32 46.82 224 20 ASN A 11 ? ? -165.93 107.65 225 20 SER A 14 ? ? 60.20 -179.95 226 20 LYS A 15 ? ? 59.68 96.02 227 20 ALA A 16 ? ? -173.40 84.81 228 20 LEU A 20 ? ? 54.89 88.46 229 20 ASP A 55 ? ? 173.96 -178.41 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? #