HEADER HYDROLASE 14-MAY-22 7ZVA TITLE CRYSTAL STRUCTURE OF THE NATIVE ZYMOGEN FORM OF THE GLUTAMIC-CLASS TITLE 2 PROLYL-ENDOPEPTIDASE NEPROSIN AT 1.80 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL PEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PRO-FORM OF THE GLUTAMIC ENDOPEPTIDASE NEPROSIN (R25 COMPND 6 TO Q380) WITH AN N-TERMINAL IGK LEADER SEQUENCE AND A C-TERMINAL NON- COMPND 7 CLEAVABLE HIS6-TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEPENTHES VENTRICOSA X NEPENTHES ALATA; SOURCE 3 ORGANISM_TAXID: 1744888; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: SUSPENSION-ADAPTED 293 HUMAN EMBRYONIC SOURCE 7 KIDNEY (HEK) CELLS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCMV-SPORT 6 KEYWDS GLUTAMIC ENDOPEPTIDASE, ZYMOGEN, PROFORM, COELIAC DISEASE THERAPY, KEYWDS 2 PLANT PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DEL AMO-MAESTRO,U.ECKHARD,A.RODRIGUEZ-BANQUERI,S.R.MENDES, AUTHOR 2 T.GUEVARA,F.X.GOMIS-RUTH REVDAT 2 31-JAN-24 7ZVA 1 REMARK REVDAT 1 10-AUG-22 7ZVA 0 JRNL AUTH L.DEL AMO-MAESTRO,S.R.MENDES,A.RODRIGUEZ-BANQUERI, JRNL AUTH 2 L.GARZON-FLORES,M.GIRBAL,M.J.RODRIGUEZ-LAGUNAS,T.GUEVARA, JRNL AUTH 3 A.FRANCH,F.J.PEREZ-CANO,U.ECKHARD,F.X.GOMIS-RUTH JRNL TITL MOLECULAR AND IN VIVO STUDIES OF A GLUTAMATE-CLASS JRNL TITL 2 PROLYL-ENDOPEPTIDASE FOR COELIAC DISEASE THERAPY. JRNL REF NAT COMMUN V. 13 4446 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35915115 JRNL DOI 10.1038/S41467-022-32215-1 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (20-OCT-2021) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.970 REMARK 3 FREE R VALUE TEST SET COUNT : 635 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 32 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.33 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1042 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3423 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1024 REMARK 3 BIN R VALUE (WORKING SET) : 0.3369 REMARK 3 BIN FREE R VALUE : 0.6657 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 18 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.88520 REMARK 3 B22 (A**2) : 1.77950 REMARK 3 B33 (A**2) : -9.66470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.135 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.124 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.126 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.120 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2813 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3834 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1203 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 482 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2757 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 365 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 3 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2652 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {C|1 - 2 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.1314 12.7223 43.3187 REMARK 3 T TENSOR REMARK 3 T11: -0.0444 T22: -0.0249 REMARK 3 T33: -0.0174 T12: 0.0049 REMARK 3 T13: 0.0043 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.0827 L22: 0.9159 REMARK 3 L33: 0.2994 L12: -0.0754 REMARK 3 L13: 0.0493 L23: -0.1033 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.0016 S13: -0.0770 REMARK 3 S21: 0.0096 S22: 0.0001 S23: 0.0908 REMARK 3 S31: -0.0390 S32: -0.0147 S33: -0.0075 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0050 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 63.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7ZU8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.0, 22% PEG REMARK 280 6000, 10% ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.18500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 TRP A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 TRP A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 22 REMARK 465 MET A 23 REMARK 465 VAL A 24 REMARK 465 ARG A 25 REMARK 465 SER A 26 REMARK 465 ILE A 27 REMARK 465 GLN A 28 REMARK 465 SER A 77 REMARK 465 TYR A 78 REMARK 465 ALA A 79 REMARK 465 SER A 80 REMARK 465 LYS A 81 REMARK 465 VAL A 82 REMARK 465 GLY A 83 REMARK 465 GLU A 84 REMARK 465 TYR A 85 REMARK 465 ASN A 122 REMARK 465 LEU A 123 REMARK 465 LYS A 124 REMARK 465 PHE A 125 REMARK 465 ALA A 126 REMARK 465 PRO A 127 REMARK 465 PRO A 128 REMARK 465 SER A 129 REMARK 465 ALA A 130 REMARK 465 ASN A 131 REMARK 465 ALA A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 70 103.83 -48.95 REMARK 500 GLU A 159 74.84 -115.76 REMARK 500 ASP A 212 42.57 -145.78 REMARK 500 ASP A 221 -132.62 49.78 REMARK 500 ASN A 283 -68.56 -135.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 374 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 855 DISTANCE = 6.88 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZU8 RELATED DB: PDB REMARK 900 SAME PROTEIN BUT WITHOUT THE LUXO4-01 COMPOUND WHICH WAS USED FOR REMARK 900 INITIAL PHASING. DBREF 7ZVA A 1 409 PDB 7ZVA 7ZVA 1 409 SEQRES 1 A 389 MET GLU THR ASP THR LEU LEU LEU TRP VAL LEU LEU LEU SEQRES 2 A 389 TRP VAL PRO GLY SER THR GLY ASP LEU MET VAL ARG SER SEQRES 3 A 389 ILE GLN ALA ARG LEU ALA ASN LYS PRO LYS GLY THR ILE SEQRES 4 A 389 LYS THR ILE LYS GLY ASP ASP GLY GLU VAL VAL ASP CYS SEQRES 5 A 389 VAL ASP ILE TYR LYS GLN PRO ALA PHE ASP HIS PRO LEU SEQRES 6 A 389 LEU LYS ASN HIS THR LEU GLN MET GLN PRO SER SER TYR SEQRES 7 A 389 ALA SER LYS VAL GLY GLU TYR ASN LYS LEU GLU GLN PRO SEQRES 8 A 389 TRP HIS LYS ASN GLY GLU CYS PRO LYS GLY SER ILE PRO SEQRES 9 A 389 ILE ARG ARG GLN VAL ILE THR GLY LEU PRO VAL VAL LYS SEQRES 10 A 389 LYS GLN PHE PRO ASN LEU LYS PHE ALA PRO PRO SER ALA SEQRES 11 A 389 ASN THR ASN HIS GLN TYR ALA VAL ILE ALA TYR PHE TYR SEQRES 12 A 389 GLY ASN ALA SER LEU GLN GLY ALA ASN ALA THR ILE ASN SEQRES 13 A 389 ILE TRP GLU PRO ASN LEU LYS ASN PRO ASN GLY ASP PHE SEQRES 14 A 389 SER LEU THR GLN ILE TRP ILE SER ALA GLY SER GLY SER SEQRES 15 A 389 SER LEU ASN THR ILE GLU ALA GLY TRP GLN VAL TYR PRO SEQRES 16 A 389 GLY ARG THR GLY ASP SER GLN PRO ARG PHE PHE ILE TYR SEQRES 17 A 389 TRP THR ALA ASP GLY TYR THR SER THR GLY CYS TYR ASP SEQRES 18 A 389 LEU THR CYS PRO GLY PHE VAL GLN THR ASN ASN TYR TYR SEQRES 19 A 389 ALA ILE GLY MET ALA LEU GLN PRO SER VAL TYR GLY GLY SEQRES 20 A 389 GLN GLN TYR GLU LEU ASN GLU SER ILE GLN ARG ASP PRO SEQRES 21 A 389 ALA THR GLY ASN TRP TRP LEU TYR LEU TRP GLY THR VAL SEQRES 22 A 389 VAL GLY TYR TRP PRO ALA SER ILE TYR ASN SER ILE THR SEQRES 23 A 389 ASN GLY ALA ASP THR VAL GLU TRP GLY GLY GLU ILE TYR SEQRES 24 A 389 ASP SER SER GLY THR GLY GLY PHE HIS THR THR THR GLN SEQRES 25 A 389 MET GLY SER GLY HIS PHE PRO THR GLU GLY TYR GLY LYS SEQRES 26 A 389 ALA SER TYR VAL ARG ASP LEU GLN CYS VAL ASP THR TYR SEQRES 27 A 389 GLY ASN VAL ILE SER PRO THR ALA ASN SER PHE GLN GLY SEQRES 28 A 389 ILE ALA PRO ALA PRO ASN CYS TYR ASN TYR GLN PHE GLN SEQRES 29 A 389 GLN GLY SER SER GLU LEU TYR LEU PHE TYR GLY GLY PRO SEQRES 30 A 389 GLY CYS GLN ALA ILE ALA HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET FUC B 2 10 HET NAG C 1 14 HET NAG C 2 14 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET ACT A 506 4 HET ACT A 507 4 HET ACT A 508 4 HET ACT A 509 4 HET ACT A 510 4 HET ACT A 511 4 HET ACT A 512 4 HET ACT A 513 4 HET IPA A 514 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 FORMUL 4 GOL 5(C3 H8 O3) FORMUL 9 ACT 8(C2 H3 O2 1-) FORMUL 17 IPA C3 H8 O FORMUL 18 HOH *256(H2 O) HELIX 1 AA1 TYR A 56 LYS A 67 5 12 HELIX 2 AA2 GLN A 90 GLY A 96 5 7 HELIX 3 AA3 SER A 180 LEU A 184 5 5 HELIX 4 AA4 TYR A 194 GLY A 199 1 6 HELIX 5 AA5 PRO A 278 TYR A 282 5 5 HELIX 6 AA6 PHE A 318 GLY A 322 5 5 HELIX 7 AA7 THR A 345 PHE A 349 5 5 SHEET 1 AA1 2 ARG A 30 LEU A 31 0 SHEET 2 AA1 2 VAL A 109 ILE A 110 -1 O ILE A 110 N ARG A 30 SHEET 1 AA2 3 THR A 38 LYS A 43 0 SHEET 2 AA2 3 VAL A 49 ASP A 54 -1 O CYS A 52 N LYS A 40 SHEET 3 AA2 3 SER A 102 ARG A 106 -1 O ILE A 105 N ASP A 51 SHEET 1 AA3 7 CYS A 219 TYR A 220 0 SHEET 2 AA3 7 ARG A 204 THR A 210 -1 N TRP A 209 O CYS A 219 SHEET 3 AA3 7 ASN A 185 VAL A 193 -1 N GLY A 190 O PHE A 206 SHEET 4 AA3 7 PHE A 169 ALA A 178 -1 N SER A 170 O VAL A 193 SHEET 5 AA3 7 THR A 291 TYR A 299 -1 O GLU A 297 N LEU A 171 SHEET 6 AA3 7 HIS A 134 PHE A 142 -1 N TYR A 141 O VAL A 292 SHEET 7 AA3 7 GLN A 350 ILE A 352 -1 O ILE A 352 N VAL A 138 SHEET 1 AA4 7 VAL A 228 GLN A 229 0 SHEET 2 AA4 7 THR A 272 TRP A 277 -1 O TYR A 276 N VAL A 228 SHEET 3 AA4 7 TRP A 265 LEU A 269 -1 N LEU A 267 O GLY A 275 SHEET 4 AA4 7 GLU A 251 ARG A 258 -1 N SER A 255 O TYR A 268 SHEET 5 AA4 7 GLY A 150 ASN A 156 -1 N ALA A 151 O ILE A 256 SHEET 6 AA4 7 SER A 327 VAL A 335 -1 O TYR A 328 N ASN A 156 SHEET 7 AA4 7 VAL A 341 ILE A 342 -1 O ILE A 342 N CYS A 334 SHEET 1 AA5 8 VAL A 228 GLN A 229 0 SHEET 2 AA5 8 THR A 272 TRP A 277 -1 O TYR A 276 N VAL A 228 SHEET 3 AA5 8 TRP A 265 LEU A 269 -1 N LEU A 267 O GLY A 275 SHEET 4 AA5 8 GLU A 251 ARG A 258 -1 N SER A 255 O TYR A 268 SHEET 5 AA5 8 GLY A 150 ASN A 156 -1 N ALA A 151 O ILE A 256 SHEET 6 AA5 8 SER A 327 VAL A 335 -1 O TYR A 328 N ASN A 156 SHEET 7 AA5 8 TYR A 371 GLY A 375 -1 O LEU A 372 N VAL A 329 SHEET 8 AA5 8 ASN A 360 GLN A 364 -1 N GLN A 362 O PHE A 373 SSBOND 1 CYS A 52 CYS A 98 1555 1555 2.04 SSBOND 2 CYS A 219 CYS A 224 1555 1555 2.04 SSBOND 3 CYS A 358 CYS A 379 1555 1555 2.05 LINK ND2 ASN A 145 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 152 C1 NAG C 1 1555 1555 1.43 LINK O6 NAG B 1 C1 FUC B 2 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 CRYST1 86.370 92.620 42.690 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023425 0.00000