data_8A96 # _entry.id 8A96 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.369 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8A96 pdb_00008a96 10.2210/pdb8a96/pdb WWPDB D_1292123966 ? ? EMDB EMD-15271 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS Cov2 Spike RBD in complex with Fab47' _pdbx_database_related.db_id EMD-15271 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8A96 _pdbx_database_status.recvd_initial_deposition_date 2022-06-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hallberg, B.M.' 1 0000-0002-6781-0345 'Das, H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Immunity _citation.journal_id_ASTM IUNIEH _citation.journal_id_CSD 2048 _citation.journal_id_ISSN 1074-7613 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 193 _citation.page_last 206.e7 _citation.title 'Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.immuni.2022.12.005 _citation.pdbx_database_id_PubMed 36574772 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pushparaj, P.' 1 ? primary 'Nicoletto, A.' 2 ? primary 'Sheward, D.J.' 3 ? primary 'Das, H.' 4 ? primary 'Castro Dopico, X.' 5 ? primary 'Perez Vidakovics, L.' 6 ? primary 'Hanke, L.' 7 ? primary 'Chernyshev, M.' 8 ? primary 'Narang, S.' 9 ? primary 'Kim, S.' 10 ? primary 'Fischbach, J.' 11 ? primary 'Ekstrom, S.' 12 ? primary 'McInerney, G.' 13 ? primary 'Hallberg, B.M.' 14 ? primary 'Murrell, B.' 15 ? primary 'Corcoran, M.' 16 ? primary 'Karlsson Hedestam, G.B.' 17 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8A96 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8A96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 23017.887 1 ? ? ? ? 2 polymer man 'Fab47 Heavy chain (variable domain)' 13391.934 1 ? ? ? ? 3 polymer man 'Fab47 Light chain (variable domain)' 11398.565 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VRFPNIANLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGF NCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKST ; ;VRFPNIANLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGF NCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKST ; C ? 2 'polypeptide(L)' no no ;VQLVQSGAEVKKPGSSVKVSCKASGGTFNTYAINWVRQAPGQGLEWMGRIIPMFGIANYAQKFQGTVTFTADKSTSTAYM ELSSLRYEDTAVYYCARSAYYSESSGYYLDYWGQGTLVTVSS ; ;VQLVQSGAEVKKPGSSVKVSCKASGGTFNTYAINWVRQAPGQGLEWMGRIIPMFGIANYAQKFQGTVTFTADKSTSTAYM ELSSLRYEDTAVYYCARSAYYSESSGYYLDYWGQGTLVTVSS ; K ? 3 'polypeptide(L)' no no ;EIVLTQSPGTLSLSPGERATLSCRASQSVSGSYLAWYQQKPGQAPSLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYYCQQYVNSPRTFGQGTKLE ; ;EIVLTQSPGTLSLSPGERATLSCRASQSVSGSYLAWYQQKPGQAPSLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYYCQQYVNSPRTFGQGTKLE ; J ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ARG n 1 3 PHE n 1 4 PRO n 1 5 ASN n 1 6 ILE n 1 7 ALA n 1 8 ASN n 1 9 LEU n 1 10 CYS n 1 11 PRO n 1 12 PHE n 1 13 GLY n 1 14 GLU n 1 15 VAL n 1 16 PHE n 1 17 ASN n 1 18 ALA n 1 19 THR n 1 20 ARG n 1 21 PHE n 1 22 ALA n 1 23 SER n 1 24 VAL n 1 25 TYR n 1 26 ALA n 1 27 TRP n 1 28 ASN n 1 29 ARG n 1 30 LYS n 1 31 ARG n 1 32 ILE n 1 33 SER n 1 34 ASN n 1 35 CYS n 1 36 VAL n 1 37 ALA n 1 38 ASP n 1 39 TYR n 1 40 SER n 1 41 VAL n 1 42 LEU n 1 43 TYR n 1 44 ASN n 1 45 SER n 1 46 ALA n 1 47 SER n 1 48 PHE n 1 49 SER n 1 50 THR n 1 51 PHE n 1 52 LYS n 1 53 CYS n 1 54 TYR n 1 55 GLY n 1 56 VAL n 1 57 SER n 1 58 PRO n 1 59 THR n 1 60 LYS n 1 61 LEU n 1 62 ASN n 1 63 ASP n 1 64 LEU n 1 65 CYS n 1 66 PHE n 1 67 THR n 1 68 ASN n 1 69 VAL n 1 70 TYR n 1 71 ALA n 1 72 ASP n 1 73 SER n 1 74 PHE n 1 75 VAL n 1 76 ILE n 1 77 ARG n 1 78 GLY n 1 79 ASP n 1 80 GLU n 1 81 VAL n 1 82 ARG n 1 83 GLN n 1 84 ILE n 1 85 ALA n 1 86 PRO n 1 87 GLY n 1 88 GLN n 1 89 THR n 1 90 GLY n 1 91 LYS n 1 92 ILE n 1 93 ALA n 1 94 ASP n 1 95 TYR n 1 96 ASN n 1 97 TYR n 1 98 LYS n 1 99 LEU n 1 100 PRO n 1 101 ASP n 1 102 ASP n 1 103 PHE n 1 104 THR n 1 105 GLY n 1 106 CYS n 1 107 VAL n 1 108 ILE n 1 109 ALA n 1 110 TRP n 1 111 ASN n 1 112 SER n 1 113 ASN n 1 114 ASN n 1 115 LEU n 1 116 ASP n 1 117 SER n 1 118 LYS n 1 119 VAL n 1 120 GLY n 1 121 GLY n 1 122 ASN n 1 123 TYR n 1 124 ASN n 1 125 TYR n 1 126 LEU n 1 127 TYR n 1 128 ARG n 1 129 LEU n 1 130 PHE n 1 131 ARG n 1 132 LYS n 1 133 SER n 1 134 ASN n 1 135 LEU n 1 136 LYS n 1 137 PRO n 1 138 PHE n 1 139 GLU n 1 140 ARG n 1 141 ASP n 1 142 ILE n 1 143 SER n 1 144 THR n 1 145 GLU n 1 146 ILE n 1 147 TYR n 1 148 GLN n 1 149 ALA n 1 150 GLY n 1 151 SER n 1 152 THR n 1 153 PRO n 1 154 CYS n 1 155 ASN n 1 156 GLY n 1 157 VAL n 1 158 GLU n 1 159 GLY n 1 160 PHE n 1 161 ASN n 1 162 CYS n 1 163 TYR n 1 164 PHE n 1 165 PRO n 1 166 LEU n 1 167 GLN n 1 168 SER n 1 169 TYR n 1 170 GLY n 1 171 PHE n 1 172 GLN n 1 173 PRO n 1 174 THR n 1 175 ASN n 1 176 GLY n 1 177 VAL n 1 178 GLY n 1 179 TYR n 1 180 GLN n 1 181 PRO n 1 182 TYR n 1 183 ARG n 1 184 VAL n 1 185 VAL n 1 186 VAL n 1 187 LEU n 1 188 SER n 1 189 PHE n 1 190 GLU n 1 191 LEU n 1 192 LEU n 1 193 HIS n 1 194 ALA n 1 195 PRO n 1 196 ALA n 1 197 THR n 1 198 VAL n 1 199 CYS n 1 200 GLY n 1 201 PRO n 1 202 LYS n 1 203 LYS n 1 204 SER n 1 205 THR n 2 1 VAL n 2 2 GLN n 2 3 LEU n 2 4 VAL n 2 5 GLN n 2 6 SER n 2 7 GLY n 2 8 ALA n 2 9 GLU n 2 10 VAL n 2 11 LYS n 2 12 LYS n 2 13 PRO n 2 14 GLY n 2 15 SER n 2 16 SER n 2 17 VAL n 2 18 LYS n 2 19 VAL n 2 20 SER n 2 21 CYS n 2 22 LYS n 2 23 ALA n 2 24 SER n 2 25 GLY n 2 26 GLY n 2 27 THR n 2 28 PHE n 2 29 ASN n 2 30 THR n 2 31 TYR n 2 32 ALA n 2 33 ILE n 2 34 ASN n 2 35 TRP n 2 36 VAL n 2 37 ARG n 2 38 GLN n 2 39 ALA n 2 40 PRO n 2 41 GLY n 2 42 GLN n 2 43 GLY n 2 44 LEU n 2 45 GLU n 2 46 TRP n 2 47 MET n 2 48 GLY n 2 49 ARG n 2 50 ILE n 2 51 ILE n 2 52 PRO n 2 53 MET n 2 54 PHE n 2 55 GLY n 2 56 ILE n 2 57 ALA n 2 58 ASN n 2 59 TYR n 2 60 ALA n 2 61 GLN n 2 62 LYS n 2 63 PHE n 2 64 GLN n 2 65 GLY n 2 66 THR n 2 67 VAL n 2 68 THR n 2 69 PHE n 2 70 THR n 2 71 ALA n 2 72 ASP n 2 73 LYS n 2 74 SER n 2 75 THR n 2 76 SER n 2 77 THR n 2 78 ALA n 2 79 TYR n 2 80 MET n 2 81 GLU n 2 82 LEU n 2 83 SER n 2 84 SER n 2 85 LEU n 2 86 ARG n 2 87 TYR n 2 88 GLU n 2 89 ASP n 2 90 THR n 2 91 ALA n 2 92 VAL n 2 93 TYR n 2 94 TYR n 2 95 CYS n 2 96 ALA n 2 97 ARG n 2 98 SER n 2 99 ALA n 2 100 TYR n 2 101 TYR n 2 102 SER n 2 103 GLU n 2 104 SER n 2 105 SER n 2 106 GLY n 2 107 TYR n 2 108 TYR n 2 109 LEU n 2 110 ASP n 2 111 TYR n 2 112 TRP n 2 113 GLY n 2 114 GLN n 2 115 GLY n 2 116 THR n 2 117 LEU n 2 118 VAL n 2 119 THR n 2 120 VAL n 2 121 SER n 2 122 SER n 3 1 GLU n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 GLY n 3 10 THR n 3 11 LEU n 3 12 SER n 3 13 LEU n 3 14 SER n 3 15 PRO n 3 16 GLY n 3 17 GLU n 3 18 ARG n 3 19 ALA n 3 20 THR n 3 21 LEU n 3 22 SER n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 VAL n 3 30 SER n 3 31 GLY n 3 32 SER n 3 33 TYR n 3 34 LEU n 3 35 ALA n 3 36 TRP n 3 37 TYR n 3 38 GLN n 3 39 GLN n 3 40 LYS n 3 41 PRO n 3 42 GLY n 3 43 GLN n 3 44 ALA n 3 45 PRO n 3 46 SER n 3 47 LEU n 3 48 LEU n 3 49 ILE n 3 50 TYR n 3 51 GLY n 3 52 ALA n 3 53 SER n 3 54 SER n 3 55 ARG n 3 56 ALA n 3 57 THR n 3 58 GLY n 3 59 ILE n 3 60 PRO n 3 61 ASP n 3 62 ARG n 3 63 PHE n 3 64 SER n 3 65 GLY n 3 66 SER n 3 67 GLY n 3 68 SER n 3 69 GLY n 3 70 THR n 3 71 ASP n 3 72 PHE n 3 73 THR n 3 74 LEU n 3 75 THR n 3 76 ILE n 3 77 SER n 3 78 ARG n 3 79 LEU n 3 80 GLU n 3 81 PRO n 3 82 GLU n 3 83 ASP n 3 84 PHE n 3 85 ALA n 3 86 VAL n 3 87 TYR n 3 88 TYR n 3 89 CYS n 3 90 GLN n 3 91 GLN n 3 92 TYR n 3 93 VAL n 3 94 ASN n 3 95 SER n 3 96 PRO n 3 97 ARG n 3 98 THR n 3 99 PHE n 3 100 GLY n 3 101 GLN n 3 102 GLY n 3 103 THR n 3 104 LYS n 3 105 LEU n 3 106 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 205 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus' 2901879 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 122 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 106 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDE VRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGF NCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKST ; 327 2 PDB 8A96 8A96 ? 2 ? 1 3 PDB 8A96 8A96 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8A96 C 1 ? 205 ? P0DTC2 327 ? 531 ? 327 531 2 2 8A96 K 1 ? 122 ? 8A96 2 ? 123 ? 2 123 3 3 8A96 J 1 ? 106 ? 8A96 1 ? 106 ? 1 106 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 8A96 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id C _struct_ref_seq_dif.seq_num 7 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P0DTC2 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 333 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 333 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8A96 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8A96 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.007 ? 3446 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.170 ? 4687 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.224 ? 484 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.072 ? 500 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 610 ? f_plane_restr ? ? # _struct.entry_id 8A96 _struct.title 'SARS Cov2 Spike RBD in complex with Fab47' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8A96 _struct_keywords.text 'Spike, Antibody, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 11 ? ASN A 17 ? PRO C 337 ASN C 343 1 ? 7 HELX_P HELX_P2 AA2 TYR A 39 ? ALA A 46 ? TYR C 365 ALA C 372 1 ? 8 HELX_P HELX_P3 AA3 ASP A 79 ? VAL A 81 ? ASP C 405 VAL C 407 5 ? 3 HELX_P HELX_P4 AA4 GLY A 90 ? ASN A 96 ? GLY C 416 ASN C 422 1 ? 7 HELX_P HELX_P5 AA5 SER A 112 ? SER A 117 ? SER C 438 SER C 443 1 ? 6 HELX_P HELX_P6 AA6 GLY A 176 ? TYR A 179 ? GLY C 502 TYR C 505 5 ? 4 HELX_P HELX_P7 AA7 GLY B 26 ? THR B 30 ? GLY K 27 THR K 31 1 ? 5 HELX_P HELX_P8 AA8 ARG B 86 ? THR B 90 ? ARG K 87 THR K 91 5 ? 5 HELX_P HELX_P9 AA9 VAL C 29 ? SER C 32 ? VAL J 29 SER J 32 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 35 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 53 SG ? ? ? 1_555 A CYS 106 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 154 SG ? ? ? 1_555 A CYS 162 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf4 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 95 SG ? ? K CYS 22 K CYS 96 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf5 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 89 SG ? ? J CYS 23 J CYS 89 1_555 ? ? ? ? ? ? ? 2.029 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 6 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 2 ? AA8 ? 2 ? AA9 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 28 ? ILE A 32 ? ASN C 354 ILE C 358 AA1 2 VAL A 69 ? ARG A 77 ? VAL C 395 ARG C 403 AA1 3 PRO A 181 ? PHE A 189 ? PRO C 507 PHE C 515 AA1 4 GLY A 105 ? ASN A 111 ? GLY C 431 ASN C 437 AA1 5 THR A 50 ? CYS A 53 ? THR C 376 CYS C 379 AA2 1 LEU A 126 ? ARG A 128 ? LEU C 452 ARG C 454 AA2 2 LEU A 166 ? SER A 168 ? LEU C 492 SER C 494 AA3 1 TYR A 147 ? GLN A 148 ? TYR C 473 GLN C 474 AA3 2 CYS A 162 ? TYR A 163 ? CYS C 488 TYR C 489 AA4 1 ALA B 8 ? VAL B 10 ? ALA K 9 VAL K 11 AA4 2 THR B 116 ? THR B 119 ? THR K 117 THR K 120 AA4 3 VAL B 92 ? ALA B 99 ? VAL K 93 ALA K 100 AA4 4 TYR B 31 ? GLN B 38 ? TYR K 32 GLN K 39 AA4 5 LEU B 44 ? ILE B 51 ? LEU K 45 ILE K 52 AA4 6 ILE B 56 ? TYR B 59 ? ILE K 57 TYR K 60 AA5 1 VAL B 17 ? LYS B 18 ? VAL K 18 LYS K 19 AA5 2 THR B 77 ? LEU B 82 ? THR K 78 LEU K 83 AA5 3 CYS B 21 ? LYS B 22 ? CYS K 22 LYS K 23 AA6 1 VAL B 17 ? LYS B 18 ? VAL K 18 LYS K 19 AA6 2 THR B 77 ? LEU B 82 ? THR K 78 LEU K 83 AA6 3 VAL B 67 ? ASP B 72 ? VAL K 68 ASP K 73 AA7 1 LEU C 4 ? GLN C 6 ? LEU J 4 GLN J 6 AA7 2 CYS C 23 ? ALA C 25 ? CYS J 23 ALA J 25 AA8 1 ALA C 19 ? THR C 20 ? ALA J 19 THR J 20 AA8 2 THR C 75 ? ILE C 76 ? THR J 75 ILE J 76 AA9 1 SER C 54 ? ARG C 55 ? SER J 54 ARG J 55 AA9 2 SER C 46 ? TYR C 50 ? SER J 46 TYR J 50 AA9 3 LEU C 34 ? GLN C 39 ? LEU J 34 GLN J 39 AA9 4 VAL C 86 ? GLN C 91 ? VAL J 86 GLN J 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 32 ? N ILE C 358 O VAL A 69 ? O VAL C 395 AA1 2 3 N TYR A 70 ? N TYR C 396 O SER A 188 ? O SER C 514 AA1 3 4 O LEU A 187 ? O LEU C 513 N CYS A 106 ? N CYS C 432 AA1 4 5 O VAL A 107 ? O VAL C 433 N LYS A 52 ? N LYS C 378 AA2 1 2 N TYR A 127 ? N TYR C 453 O GLN A 167 ? O GLN C 493 AA3 1 2 N TYR A 147 ? N TYR C 473 O TYR A 163 ? O TYR C 489 AA4 1 2 N GLU B 9 ? N GLU K 10 O LEU B 117 ? O LEU K 118 AA4 2 3 O THR B 116 ? O THR K 117 N TYR B 93 ? N TYR K 94 AA4 3 4 O ALA B 96 ? O ALA K 97 N ASN B 34 ? N ASN K 35 AA4 4 5 N ILE B 33 ? N ILE K 34 O ILE B 50 ? O ILE K 51 AA4 5 6 N ILE B 51 ? N ILE K 52 O ILE B 56 ? O ILE K 57 AA5 1 2 N VAL B 17 ? N VAL K 18 O LEU B 82 ? O LEU K 83 AA5 2 3 O ALA B 78 ? O ALA K 79 N CYS B 21 ? N CYS K 22 AA6 1 2 N VAL B 17 ? N VAL K 18 O LEU B 82 ? O LEU K 83 AA6 2 3 O TYR B 79 ? O TYR K 80 N THR B 70 ? N THR K 71 AA7 1 2 N THR C 5 ? N THR J 5 O ARG C 24 ? O ARG J 24 AA8 1 2 O ALA C 19 ? O ALA J 19 N ILE C 76 ? N ILE J 76 AA9 1 2 O SER C 54 ? O SER J 54 N TYR C 50 ? N TYR J 50 AA9 2 3 O LEU C 48 ? O LEU J 48 N TRP C 36 ? N TRP J 36 AA9 3 4 N GLN C 39 ? N GLN J 39 O VAL C 86 ? O VAL J 86 # _atom_sites.entry_id 8A96 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 327 327 VAL VAL C . n A 1 2 ARG 2 328 328 ARG ARG C . n A 1 3 PHE 3 329 329 PHE PHE C . n A 1 4 PRO 4 330 330 PRO PRO C . n A 1 5 ASN 5 331 331 ASN ASN C . n A 1 6 ILE 6 332 332 ILE ILE C . n A 1 7 ALA 7 333 333 ALA ALA C . n A 1 8 ASN 8 334 334 ASN ASN C . n A 1 9 LEU 9 335 335 LEU LEU C . n A 1 10 CYS 10 336 336 CYS CYS C . n A 1 11 PRO 11 337 337 PRO PRO C . n A 1 12 PHE 12 338 338 PHE PHE C . n A 1 13 GLY 13 339 339 GLY GLY C . n A 1 14 GLU 14 340 340 GLU GLU C . n A 1 15 VAL 15 341 341 VAL VAL C . n A 1 16 PHE 16 342 342 PHE PHE C . n A 1 17 ASN 17 343 343 ASN ASN C . n A 1 18 ALA 18 344 344 ALA ALA C . n A 1 19 THR 19 345 345 THR THR C . n A 1 20 ARG 20 346 346 ARG ARG C . n A 1 21 PHE 21 347 347 PHE PHE C . n A 1 22 ALA 22 348 348 ALA ALA C . n A 1 23 SER 23 349 349 SER SER C . n A 1 24 VAL 24 350 350 VAL VAL C . n A 1 25 TYR 25 351 351 TYR TYR C . n A 1 26 ALA 26 352 352 ALA ALA C . n A 1 27 TRP 27 353 353 TRP TRP C . n A 1 28 ASN 28 354 354 ASN ASN C . n A 1 29 ARG 29 355 355 ARG ARG C . n A 1 30 LYS 30 356 356 LYS LYS C . n A 1 31 ARG 31 357 357 ARG ARG C . n A 1 32 ILE 32 358 358 ILE ILE C . n A 1 33 SER 33 359 359 SER SER C . n A 1 34 ASN 34 360 360 ASN ASN C . n A 1 35 CYS 35 361 361 CYS CYS C . n A 1 36 VAL 36 362 362 VAL VAL C . n A 1 37 ALA 37 363 363 ALA ALA C . n A 1 38 ASP 38 364 364 ASP ASP C . n A 1 39 TYR 39 365 365 TYR TYR C . n A 1 40 SER 40 366 366 SER SER C . n A 1 41 VAL 41 367 367 VAL VAL C . n A 1 42 LEU 42 368 368 LEU LEU C . n A 1 43 TYR 43 369 369 TYR TYR C . n A 1 44 ASN 44 370 370 ASN ASN C . n A 1 45 SER 45 371 371 SER SER C . n A 1 46 ALA 46 372 372 ALA ALA C . n A 1 47 SER 47 373 373 SER SER C . n A 1 48 PHE 48 374 374 PHE PHE C . n A 1 49 SER 49 375 375 SER SER C . n A 1 50 THR 50 376 376 THR THR C . n A 1 51 PHE 51 377 377 PHE PHE C . n A 1 52 LYS 52 378 378 LYS LYS C . n A 1 53 CYS 53 379 379 CYS CYS C . n A 1 54 TYR 54 380 380 TYR TYR C . n A 1 55 GLY 55 381 381 GLY GLY C . n A 1 56 VAL 56 382 382 VAL VAL C . n A 1 57 SER 57 383 383 SER SER C . n A 1 58 PRO 58 384 384 PRO PRO C . n A 1 59 THR 59 385 385 THR THR C . n A 1 60 LYS 60 386 386 LYS LYS C . n A 1 61 LEU 61 387 387 LEU LEU C . n A 1 62 ASN 62 388 388 ASN ASN C . n A 1 63 ASP 63 389 389 ASP ASP C . n A 1 64 LEU 64 390 390 LEU LEU C . n A 1 65 CYS 65 391 391 CYS CYS C . n A 1 66 PHE 66 392 392 PHE PHE C . n A 1 67 THR 67 393 393 THR THR C . n A 1 68 ASN 68 394 394 ASN ASN C . n A 1 69 VAL 69 395 395 VAL VAL C . n A 1 70 TYR 70 396 396 TYR TYR C . n A 1 71 ALA 71 397 397 ALA ALA C . n A 1 72 ASP 72 398 398 ASP ASP C . n A 1 73 SER 73 399 399 SER SER C . n A 1 74 PHE 74 400 400 PHE PHE C . n A 1 75 VAL 75 401 401 VAL VAL C . n A 1 76 ILE 76 402 402 ILE ILE C . n A 1 77 ARG 77 403 403 ARG ARG C . n A 1 78 GLY 78 404 404 GLY GLY C . n A 1 79 ASP 79 405 405 ASP ASP C . n A 1 80 GLU 80 406 406 GLU GLU C . n A 1 81 VAL 81 407 407 VAL VAL C . n A 1 82 ARG 82 408 408 ARG ARG C . n A 1 83 GLN 83 409 409 GLN GLN C . n A 1 84 ILE 84 410 410 ILE ILE C . n A 1 85 ALA 85 411 411 ALA ALA C . n A 1 86 PRO 86 412 412 PRO PRO C . n A 1 87 GLY 87 413 413 GLY GLY C . n A 1 88 GLN 88 414 414 GLN GLN C . n A 1 89 THR 89 415 415 THR THR C . n A 1 90 GLY 90 416 416 GLY GLY C . n A 1 91 LYS 91 417 417 LYS LYS C . n A 1 92 ILE 92 418 418 ILE ILE C . n A 1 93 ALA 93 419 419 ALA ALA C . n A 1 94 ASP 94 420 420 ASP ASP C . n A 1 95 TYR 95 421 421 TYR TYR C . n A 1 96 ASN 96 422 422 ASN ASN C . n A 1 97 TYR 97 423 423 TYR TYR C . n A 1 98 LYS 98 424 424 LYS LYS C . n A 1 99 LEU 99 425 425 LEU LEU C . n A 1 100 PRO 100 426 426 PRO PRO C . n A 1 101 ASP 101 427 427 ASP ASP C . n A 1 102 ASP 102 428 428 ASP ASP C . n A 1 103 PHE 103 429 429 PHE PHE C . n A 1 104 THR 104 430 430 THR THR C . n A 1 105 GLY 105 431 431 GLY GLY C . n A 1 106 CYS 106 432 432 CYS CYS C . n A 1 107 VAL 107 433 433 VAL VAL C . n A 1 108 ILE 108 434 434 ILE ILE C . n A 1 109 ALA 109 435 435 ALA ALA C . n A 1 110 TRP 110 436 436 TRP TRP C . n A 1 111 ASN 111 437 437 ASN ASN C . n A 1 112 SER 112 438 438 SER SER C . n A 1 113 ASN 113 439 439 ASN ASN C . n A 1 114 ASN 114 440 440 ASN ASN C . n A 1 115 LEU 115 441 441 LEU LEU C . n A 1 116 ASP 116 442 442 ASP ASP C . n A 1 117 SER 117 443 443 SER SER C . n A 1 118 LYS 118 444 444 LYS LYS C . n A 1 119 VAL 119 445 445 VAL VAL C . n A 1 120 GLY 120 446 446 GLY GLY C . n A 1 121 GLY 121 447 447 GLY GLY C . n A 1 122 ASN 122 448 448 ASN ASN C . n A 1 123 TYR 123 449 449 TYR TYR C . n A 1 124 ASN 124 450 450 ASN ASN C . n A 1 125 TYR 125 451 451 TYR TYR C . n A 1 126 LEU 126 452 452 LEU LEU C . n A 1 127 TYR 127 453 453 TYR TYR C . n A 1 128 ARG 128 454 454 ARG ARG C . n A 1 129 LEU 129 455 455 LEU LEU C . n A 1 130 PHE 130 456 456 PHE PHE C . n A 1 131 ARG 131 457 457 ARG ARG C . n A 1 132 LYS 132 458 458 LYS LYS C . n A 1 133 SER 133 459 459 SER SER C . n A 1 134 ASN 134 460 460 ASN ASN C . n A 1 135 LEU 135 461 461 LEU LEU C . n A 1 136 LYS 136 462 462 LYS LYS C . n A 1 137 PRO 137 463 463 PRO PRO C . n A 1 138 PHE 138 464 464 PHE PHE C . n A 1 139 GLU 139 465 465 GLU GLU C . n A 1 140 ARG 140 466 466 ARG ARG C . n A 1 141 ASP 141 467 467 ASP ASP C . n A 1 142 ILE 142 468 468 ILE ILE C . n A 1 143 SER 143 469 469 SER SER C . n A 1 144 THR 144 470 470 THR THR C . n A 1 145 GLU 145 471 471 GLU GLU C . n A 1 146 ILE 146 472 472 ILE ILE C . n A 1 147 TYR 147 473 473 TYR TYR C . n A 1 148 GLN 148 474 474 GLN GLN C . n A 1 149 ALA 149 475 475 ALA ALA C . n A 1 150 GLY 150 476 476 GLY GLY C . n A 1 151 SER 151 477 477 SER SER C . n A 1 152 THR 152 478 478 THR THR C . n A 1 153 PRO 153 479 479 PRO PRO C . n A 1 154 CYS 154 480 480 CYS CYS C . n A 1 155 ASN 155 481 481 ASN ASN C . n A 1 156 GLY 156 482 482 GLY GLY C . n A 1 157 VAL 157 483 483 VAL VAL C . n A 1 158 GLU 158 484 484 GLU GLU C . n A 1 159 GLY 159 485 485 GLY GLY C . n A 1 160 PHE 160 486 486 PHE PHE C . n A 1 161 ASN 161 487 487 ASN ASN C . n A 1 162 CYS 162 488 488 CYS CYS C . n A 1 163 TYR 163 489 489 TYR TYR C . n A 1 164 PHE 164 490 490 PHE PHE C . n A 1 165 PRO 165 491 491 PRO PRO C . n A 1 166 LEU 166 492 492 LEU LEU C . n A 1 167 GLN 167 493 493 GLN GLN C . n A 1 168 SER 168 494 494 SER SER C . n A 1 169 TYR 169 495 495 TYR TYR C . n A 1 170 GLY 170 496 496 GLY GLY C . n A 1 171 PHE 171 497 497 PHE PHE C . n A 1 172 GLN 172 498 498 GLN GLN C . n A 1 173 PRO 173 499 499 PRO PRO C . n A 1 174 THR 174 500 500 THR THR C . n A 1 175 ASN 175 501 501 ASN ASN C . n A 1 176 GLY 176 502 502 GLY GLY C . n A 1 177 VAL 177 503 503 VAL VAL C . n A 1 178 GLY 178 504 504 GLY GLY C . n A 1 179 TYR 179 505 505 TYR TYR C . n A 1 180 GLN 180 506 506 GLN GLN C . n A 1 181 PRO 181 507 507 PRO PRO C . n A 1 182 TYR 182 508 508 TYR TYR C . n A 1 183 ARG 183 509 509 ARG ARG C . n A 1 184 VAL 184 510 510 VAL VAL C . n A 1 185 VAL 185 511 511 VAL VAL C . n A 1 186 VAL 186 512 512 VAL VAL C . n A 1 187 LEU 187 513 513 LEU LEU C . n A 1 188 SER 188 514 514 SER SER C . n A 1 189 PHE 189 515 515 PHE PHE C . n A 1 190 GLU 190 516 516 GLU GLU C . n A 1 191 LEU 191 517 517 LEU LEU C . n A 1 192 LEU 192 518 518 LEU LEU C . n A 1 193 HIS 193 519 519 HIS HIS C . n A 1 194 ALA 194 520 520 ALA ALA C . n A 1 195 PRO 195 521 521 PRO PRO C . n A 1 196 ALA 196 522 522 ALA ALA C . n A 1 197 THR 197 523 523 THR THR C . n A 1 198 VAL 198 524 524 VAL VAL C . n A 1 199 CYS 199 525 525 CYS CYS C . n A 1 200 GLY 200 526 526 GLY GLY C . n A 1 201 PRO 201 527 527 PRO PRO C . n A 1 202 LYS 202 528 528 LYS LYS C . n A 1 203 LYS 203 529 529 LYS LYS C . n A 1 204 SER 204 530 530 SER SER C . n A 1 205 THR 205 531 531 THR THR C . n B 2 1 VAL 1 2 2 VAL VAL K . n B 2 2 GLN 2 3 3 GLN GLN K . n B 2 3 LEU 3 4 4 LEU LEU K . n B 2 4 VAL 4 5 5 VAL VAL K . n B 2 5 GLN 5 6 6 GLN GLN K . n B 2 6 SER 6 7 7 SER SER K . n B 2 7 GLY 7 8 8 GLY GLY K . n B 2 8 ALA 8 9 9 ALA ALA K . n B 2 9 GLU 9 10 10 GLU GLU K . n B 2 10 VAL 10 11 11 VAL VAL K . n B 2 11 LYS 11 12 12 LYS LYS K . n B 2 12 LYS 12 13 13 LYS LYS K . n B 2 13 PRO 13 14 14 PRO PRO K . n B 2 14 GLY 14 15 15 GLY GLY K . n B 2 15 SER 15 16 16 SER SER K . n B 2 16 SER 16 17 17 SER SER K . n B 2 17 VAL 17 18 18 VAL VAL K . n B 2 18 LYS 18 19 19 LYS LYS K . n B 2 19 VAL 19 20 20 VAL VAL K . n B 2 20 SER 20 21 21 SER SER K . n B 2 21 CYS 21 22 22 CYS CYS K . n B 2 22 LYS 22 23 23 LYS LYS K . n B 2 23 ALA 23 24 24 ALA ALA K . n B 2 24 SER 24 25 25 SER SER K . n B 2 25 GLY 25 26 26 GLY GLY K . n B 2 26 GLY 26 27 27 GLY GLY K . n B 2 27 THR 27 28 28 THR THR K . n B 2 28 PHE 28 29 29 PHE PHE K . n B 2 29 ASN 29 30 30 ASN ASN K . n B 2 30 THR 30 31 31 THR THR K . n B 2 31 TYR 31 32 32 TYR TYR K . n B 2 32 ALA 32 33 33 ALA ALA K . n B 2 33 ILE 33 34 34 ILE ILE K . n B 2 34 ASN 34 35 35 ASN ASN K . n B 2 35 TRP 35 36 36 TRP TRP K . n B 2 36 VAL 36 37 37 VAL VAL K . n B 2 37 ARG 37 38 38 ARG ARG K . n B 2 38 GLN 38 39 39 GLN GLN K . n B 2 39 ALA 39 40 40 ALA ALA K . n B 2 40 PRO 40 41 41 PRO PRO K . n B 2 41 GLY 41 42 42 GLY GLY K . n B 2 42 GLN 42 43 43 GLN GLN K . n B 2 43 GLY 43 44 44 GLY GLY K . n B 2 44 LEU 44 45 45 LEU LEU K . n B 2 45 GLU 45 46 46 GLU GLU K . n B 2 46 TRP 46 47 47 TRP TRP K . n B 2 47 MET 47 48 48 MET MET K . n B 2 48 GLY 48 49 49 GLY GLY K . n B 2 49 ARG 49 50 50 ARG ARG K . n B 2 50 ILE 50 51 51 ILE ILE K . n B 2 51 ILE 51 52 52 ILE ILE K . n B 2 52 PRO 52 53 53 PRO PRO K . n B 2 53 MET 53 54 54 MET MET K . n B 2 54 PHE 54 55 55 PHE PHE K . n B 2 55 GLY 55 56 56 GLY GLY K . n B 2 56 ILE 56 57 57 ILE ILE K . n B 2 57 ALA 57 58 58 ALA ALA K . n B 2 58 ASN 58 59 59 ASN ASN K . n B 2 59 TYR 59 60 60 TYR TYR K . n B 2 60 ALA 60 61 61 ALA ALA K . n B 2 61 GLN 61 62 62 GLN GLN K . n B 2 62 LYS 62 63 63 LYS LYS K . n B 2 63 PHE 63 64 64 PHE PHE K . n B 2 64 GLN 64 65 65 GLN GLN K . n B 2 65 GLY 65 66 66 GLY GLY K . n B 2 66 THR 66 67 67 THR THR K . n B 2 67 VAL 67 68 68 VAL VAL K . n B 2 68 THR 68 69 69 THR THR K . n B 2 69 PHE 69 70 70 PHE PHE K . n B 2 70 THR 70 71 71 THR THR K . n B 2 71 ALA 71 72 72 ALA ALA K . n B 2 72 ASP 72 73 73 ASP ASP K . n B 2 73 LYS 73 74 74 LYS LYS K . n B 2 74 SER 74 75 75 SER SER K . n B 2 75 THR 75 76 76 THR THR K . n B 2 76 SER 76 77 77 SER SER K . n B 2 77 THR 77 78 78 THR THR K . n B 2 78 ALA 78 79 79 ALA ALA K . n B 2 79 TYR 79 80 80 TYR TYR K . n B 2 80 MET 80 81 81 MET MET K . n B 2 81 GLU 81 82 82 GLU GLU K . n B 2 82 LEU 82 83 83 LEU LEU K . n B 2 83 SER 83 84 84 SER SER K . n B 2 84 SER 84 85 85 SER SER K . n B 2 85 LEU 85 86 86 LEU LEU K . n B 2 86 ARG 86 87 87 ARG ARG K . n B 2 87 TYR 87 88 88 TYR TYR K . n B 2 88 GLU 88 89 89 GLU GLU K . n B 2 89 ASP 89 90 90 ASP ASP K . n B 2 90 THR 90 91 91 THR THR K . n B 2 91 ALA 91 92 92 ALA ALA K . n B 2 92 VAL 92 93 93 VAL VAL K . n B 2 93 TYR 93 94 94 TYR TYR K . n B 2 94 TYR 94 95 95 TYR TYR K . n B 2 95 CYS 95 96 96 CYS CYS K . n B 2 96 ALA 96 97 97 ALA ALA K . n B 2 97 ARG 97 98 98 ARG ARG K . n B 2 98 SER 98 99 99 SER SER K . n B 2 99 ALA 99 100 100 ALA ALA K . n B 2 100 TYR 100 101 101 TYR TYR K . n B 2 101 TYR 101 102 102 TYR TYR K . n B 2 102 SER 102 103 103 SER SER K . n B 2 103 GLU 103 104 104 GLU GLU K . n B 2 104 SER 104 105 105 SER SER K . n B 2 105 SER 105 106 106 SER SER K . n B 2 106 GLY 106 107 107 GLY GLY K . n B 2 107 TYR 107 108 108 TYR TYR K . n B 2 108 TYR 108 109 109 TYR TYR K . n B 2 109 LEU 109 110 110 LEU LEU K . n B 2 110 ASP 110 111 111 ASP ASP K . n B 2 111 TYR 111 112 112 TYR TYR K . n B 2 112 TRP 112 113 113 TRP TRP K . n B 2 113 GLY 113 114 114 GLY GLY K . n B 2 114 GLN 114 115 115 GLN GLN K . n B 2 115 GLY 115 116 116 GLY GLY K . n B 2 116 THR 116 117 117 THR THR K . n B 2 117 LEU 117 118 118 LEU LEU K . n B 2 118 VAL 118 119 119 VAL VAL K . n B 2 119 THR 119 120 120 THR THR K . n B 2 120 VAL 120 121 121 VAL VAL K . n B 2 121 SER 121 122 122 SER SER K . n B 2 122 SER 122 123 123 SER SER K . n C 3 1 GLU 1 1 1 GLU GLU J . n C 3 2 ILE 2 2 2 ILE ILE J . n C 3 3 VAL 3 3 3 VAL VAL J . n C 3 4 LEU 4 4 4 LEU LEU J . n C 3 5 THR 5 5 5 THR THR J . n C 3 6 GLN 6 6 6 GLN GLN J . n C 3 7 SER 7 7 7 SER SER J . n C 3 8 PRO 8 8 8 PRO PRO J . n C 3 9 GLY 9 9 9 GLY GLY J . n C 3 10 THR 10 10 10 THR THR J . n C 3 11 LEU 11 11 11 LEU LEU J . n C 3 12 SER 12 12 12 SER SER J . n C 3 13 LEU 13 13 13 LEU LEU J . n C 3 14 SER 14 14 14 SER SER J . n C 3 15 PRO 15 15 15 PRO PRO J . n C 3 16 GLY 16 16 16 GLY GLY J . n C 3 17 GLU 17 17 17 GLU GLU J . n C 3 18 ARG 18 18 18 ARG ARG J . n C 3 19 ALA 19 19 19 ALA ALA J . n C 3 20 THR 20 20 20 THR THR J . n C 3 21 LEU 21 21 21 LEU LEU J . n C 3 22 SER 22 22 22 SER SER J . n C 3 23 CYS 23 23 23 CYS CYS J . n C 3 24 ARG 24 24 24 ARG ARG J . n C 3 25 ALA 25 25 25 ALA ALA J . n C 3 26 SER 26 26 26 SER SER J . n C 3 27 GLN 27 27 27 GLN GLN J . n C 3 28 SER 28 28 28 SER SER J . n C 3 29 VAL 29 29 29 VAL VAL J . n C 3 30 SER 30 30 30 SER SER J . n C 3 31 GLY 31 31 31 GLY GLY J . n C 3 32 SER 32 32 32 SER SER J . n C 3 33 TYR 33 33 33 TYR TYR J . n C 3 34 LEU 34 34 34 LEU LEU J . n C 3 35 ALA 35 35 35 ALA ALA J . n C 3 36 TRP 36 36 36 TRP TRP J . n C 3 37 TYR 37 37 37 TYR TYR J . n C 3 38 GLN 38 38 38 GLN GLN J . n C 3 39 GLN 39 39 39 GLN GLN J . n C 3 40 LYS 40 40 40 LYS LYS J . n C 3 41 PRO 41 41 41 PRO PRO J . n C 3 42 GLY 42 42 42 GLY GLY J . n C 3 43 GLN 43 43 43 GLN GLN J . n C 3 44 ALA 44 44 44 ALA ALA J . n C 3 45 PRO 45 45 45 PRO PRO J . n C 3 46 SER 46 46 46 SER SER J . n C 3 47 LEU 47 47 47 LEU LEU J . n C 3 48 LEU 48 48 48 LEU LEU J . n C 3 49 ILE 49 49 49 ILE ILE J . n C 3 50 TYR 50 50 50 TYR TYR J . n C 3 51 GLY 51 51 51 GLY GLY J . n C 3 52 ALA 52 52 52 ALA ALA J . n C 3 53 SER 53 53 53 SER SER J . n C 3 54 SER 54 54 54 SER SER J . n C 3 55 ARG 55 55 55 ARG ARG J . n C 3 56 ALA 56 56 56 ALA ALA J . n C 3 57 THR 57 57 57 THR THR J . n C 3 58 GLY 58 58 58 GLY GLY J . n C 3 59 ILE 59 59 59 ILE ILE J . n C 3 60 PRO 60 60 60 PRO PRO J . n C 3 61 ASP 61 61 61 ASP ASP J . n C 3 62 ARG 62 62 62 ARG ARG J . n C 3 63 PHE 63 63 63 PHE PHE J . n C 3 64 SER 64 64 64 SER SER J . n C 3 65 GLY 65 65 65 GLY GLY J . n C 3 66 SER 66 66 66 SER SER J . n C 3 67 GLY 67 67 67 GLY GLY J . n C 3 68 SER 68 68 68 SER SER J . n C 3 69 GLY 69 69 69 GLY GLY J . n C 3 70 THR 70 70 70 THR THR J . n C 3 71 ASP 71 71 71 ASP ASP J . n C 3 72 PHE 72 72 72 PHE PHE J . n C 3 73 THR 73 73 73 THR THR J . n C 3 74 LEU 74 74 74 LEU LEU J . n C 3 75 THR 75 75 75 THR THR J . n C 3 76 ILE 76 76 76 ILE ILE J . n C 3 77 SER 77 77 77 SER SER J . n C 3 78 ARG 78 78 78 ARG ARG J . n C 3 79 LEU 79 79 79 LEU LEU J . n C 3 80 GLU 80 80 80 GLU GLU J . n C 3 81 PRO 81 81 81 PRO PRO J . n C 3 82 GLU 82 82 82 GLU GLU J . n C 3 83 ASP 83 83 83 ASP ASP J . n C 3 84 PHE 84 84 84 PHE PHE J . n C 3 85 ALA 85 85 85 ALA ALA J . n C 3 86 VAL 86 86 86 VAL VAL J . n C 3 87 TYR 87 87 87 TYR TYR J . n C 3 88 TYR 88 88 88 TYR TYR J . n C 3 89 CYS 89 89 89 CYS CYS J . n C 3 90 GLN 90 90 90 GLN GLN J . n C 3 91 GLN 91 91 91 GLN GLN J . n C 3 92 TYR 92 92 92 TYR TYR J . n C 3 93 VAL 93 93 93 VAL VAL J . n C 3 94 ASN 94 94 94 ASN ASN J . n C 3 95 SER 95 95 95 SER SER J . n C 3 96 PRO 96 96 96 PRO PRO J . n C 3 97 ARG 97 97 97 ARG ARG J . n C 3 98 THR 98 98 98 THR THR J . n C 3 99 PHE 99 99 99 PHE PHE J . n C 3 100 GLY 100 100 100 GLY GLY J . n C 3 101 GLN 101 101 101 GLN GLN J . n C 3 102 GLY 102 102 102 GLY GLY J . n C 3 103 THR 103 103 103 THR THR J . n C 3 104 LYS 104 104 104 LYS LYS J . n C 3 105 LEU 105 105 105 LEU LEU J . n C 3 106 GLU 106 106 106 GLU GLU J . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email martin.hallberg@ki.se _pdbx_contact_author.name_first 'Martin B.' _pdbx_contact_author.name_last Hallberg _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6781-0345 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-05-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20.1_4487: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 8A96 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 7A29 # _em_3d_reconstruction.entry_id 8A96 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 139021 _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Localized reconstruction' _em_entity_assembly.name 'SARS-CoV-2 Spike in Complex with Fab47' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 8A96 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 20 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification 163000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 8A96 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8A96 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8A96 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR C 430 ? ? -109.56 71.16 2 1 ASN C 481 ? ? 57.61 13.13 3 1 GLN K 6 ? ? -117.93 -166.43 4 1 THR K 76 ? ? 80.69 -6.96 5 1 SER K 122 ? ? -124.93 -161.80 6 1 SER J 12 ? ? -91.74 32.52 7 1 LEU J 13 ? ? -96.28 30.50 8 1 GLU J 17 ? ? 59.81 -126.98 9 1 THR J 20 ? ? -102.43 59.81 10 1 PRO J 96 ? ? -77.18 46.68 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C ILE 332 ? CG1 ? A ILE 6 CG1 2 1 Y 1 C ILE 332 ? CG2 ? A ILE 6 CG2 3 1 Y 1 C ILE 332 ? CD1 ? A ILE 6 CD1 4 1 Y 1 C LYS 528 ? CG ? A LYS 202 CG 5 1 Y 1 C LYS 528 ? CD ? A LYS 202 CD 6 1 Y 1 C LYS 528 ? CE ? A LYS 202 CE 7 1 Y 1 C LYS 528 ? NZ ? A LYS 202 NZ 8 1 Y 1 C LYS 529 ? CG ? A LYS 203 CG 9 1 Y 1 C LYS 529 ? CD ? A LYS 203 CD 10 1 Y 1 C LYS 529 ? CE ? A LYS 203 CE 11 1 Y 1 C LYS 529 ? NZ ? A LYS 203 NZ # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 629 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 56 _em_image_recording.average_exposure_time 1.2 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? cryoSPARC ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? cryoSPARC ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? cryoSPARC 3.2 1 ? ? 11 CLASSIFICATION ? cryoSPARC ? 1 ? ? 12 RECONSTRUCTION ? cryoSPARC ? 1 ? ? 13 'MODEL REFINEMENT' ? Coot 0.9 ? 1 ? 14 'MODEL REFINEMENT' ? PHENIX 1.20 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.9 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7A29 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #