data_8BNA # _entry.id 8BNA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8BNA pdb_00008bna 10.2210/pdb8bna/pdb RCSB GDL006 ? ? WWPDB D_1000179962 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1987-01-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-07-02 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 8BNA _pdbx_database_status.recvd_initial_deposition_date 1986-08-29 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pjura, P.E.' 1 'Grzeskowiak, K.' 2 'Dickerson, R.E.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Binding of Hoechst 33258 to the minor groove of B-DNA.' J.Mol.Biol. 197 257 271 1987 JMOBAK UK 0022-2836 0070 ? 2445998 '10.1016/0022-2836(87)90123-9' 1 'Isohelical Analysis of DNA Groove-Binding Drugs' J.Med.Chem. 29 727 733 1986 JMCMAR US 0022-2623 0151 ? ? ? 2 'Binding of an Antitumor Drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G' J.Mol.Biol. 183 553 563 1985 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Drugs and Minor Groove Binding in B-DNA Netropsin and Hoechst 33258' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 4 'The Molecular Origin of DNA-Drug Specificity in Netropsin and Distamycin' Proc.Natl.Acad.Sci.USA 82 1376 1380 1985 PNASA6 US 0027-8424 0040 ? ? ? 5 'Crystal Structure Analysis of a Complete Turn of B-DNA' Nature 287 755 758 1980 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pjura, P.E.' 1 ? primary 'Grzeskowiak, K.' 2 ? primary 'Dickerson, R.E.' 3 ? 1 'Goodsell, D.' 4 ? 1 'Dickerson, R.E.' 5 ? 2 'Kopka, M.L.' 6 ? 2 'Yoon, C.' 7 ? 2 'Goodsell, D.S.' 8 ? 2 'Pjura, P.' 9 ? 2 'Dickerson, R.E.' 10 ? 3 'Kopka, M.L.' 11 ? 3 'Pjura, P.E.' 12 ? 3 'Goodsell, D.S.' 13 ? 3 'Dickerson, R.E.' 14 ? 4 'Kopka, M.L.' 15 ? 4 'Yoon, C.' 16 ? 4 'Goodsell, D.S.' 17 ? 4 'Pjura, P.' 18 ? 4 'Dickerson, R.E.' 19 ? 5 'Wing, R.' 20 ? 5 'Drew, H.R.' 21 ? 5 'Takano, T.' 22 ? 5 'Broka, C.' 23 ? 5 'Tanaka, S.' 24 ? 5 'Itakura, K.' 25 ? 5 'Dickerson, R.E.' 26 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 424.498 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 174 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" HT 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 HT non-polymer . "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 'HOECHST 33258' 'C25 H24 N6 O' 424.498 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HT 1 25 25 HT HT A . D 3 MG 1 27 27 MG MG A . E 4 HOH 1 29 29 HOH HOH A . E 4 HOH 2 31 31 HOH HOH A . E 4 HOH 3 33 33 HOH HOH A . E 4 HOH 4 34 34 HOH HOH A . E 4 HOH 5 35 35 HOH HOH A . E 4 HOH 6 36 36 HOH HOH A . E 4 HOH 7 38 38 HOH HOH A . E 4 HOH 8 39 39 HOH HOH A . E 4 HOH 9 41 41 HOH HOH A . E 4 HOH 10 47 47 HOH HOH A . E 4 HOH 11 48 48 HOH HOH A . E 4 HOH 12 50 50 HOH HOH A . E 4 HOH 13 53 53 HOH HOH A . E 4 HOH 14 54 54 HOH HOH A . E 4 HOH 15 55 55 HOH HOH A . E 4 HOH 16 56 56 HOH HOH A . E 4 HOH 17 58 58 HOH HOH A . E 4 HOH 18 59 59 HOH HOH A . E 4 HOH 19 60 60 HOH HOH A . E 4 HOH 20 61 61 HOH HOH A . E 4 HOH 21 62 62 HOH HOH A . E 4 HOH 22 66 66 HOH HOH A . E 4 HOH 23 67 67 HOH HOH A . E 4 HOH 24 68 68 HOH HOH A . E 4 HOH 25 69 69 HOH HOH A . E 4 HOH 26 71 71 HOH HOH A . E 4 HOH 27 72 72 HOH HOH A . E 4 HOH 28 73 73 HOH HOH A . E 4 HOH 29 74 74 HOH HOH A . E 4 HOH 30 76 76 HOH HOH A . E 4 HOH 31 77 77 HOH HOH A . E 4 HOH 32 81 81 HOH HOH A . E 4 HOH 33 85 85 HOH HOH A . E 4 HOH 34 86 86 HOH HOH A . E 4 HOH 35 90 90 HOH HOH A . E 4 HOH 36 91 91 HOH HOH A . E 4 HOH 37 93 93 HOH HOH A . E 4 HOH 38 95 95 HOH HOH A . E 4 HOH 39 97 97 HOH HOH A . E 4 HOH 40 98 98 HOH HOH A . E 4 HOH 41 99 99 HOH HOH A . E 4 HOH 42 100 100 HOH HOH A . E 4 HOH 43 101 101 HOH HOH A . E 4 HOH 44 103 103 HOH HOH A . E 4 HOH 45 105 105 HOH HOH A . E 4 HOH 46 107 107 HOH HOH A . E 4 HOH 47 108 108 HOH HOH A . E 4 HOH 48 109 109 HOH HOH A . E 4 HOH 49 110 110 HOH HOH A . E 4 HOH 50 112 112 HOH HOH A . E 4 HOH 51 114 114 HOH HOH A . E 4 HOH 52 115 115 HOH HOH A . E 4 HOH 53 116 116 HOH HOH A . E 4 HOH 54 118 118 HOH HOH A . E 4 HOH 55 119 119 HOH HOH A . E 4 HOH 56 120 120 HOH HOH A . E 4 HOH 57 121 121 HOH HOH A . E 4 HOH 58 123 123 HOH HOH A . E 4 HOH 59 124 124 HOH HOH A . E 4 HOH 60 128 128 HOH HOH A . E 4 HOH 61 129 129 HOH HOH A . E 4 HOH 62 130 130 HOH HOH A . E 4 HOH 63 131 131 HOH HOH A . E 4 HOH 64 132 132 HOH HOH A . E 4 HOH 65 133 133 HOH HOH A . E 4 HOH 66 134 134 HOH HOH A . E 4 HOH 67 137 137 HOH HOH A . E 4 HOH 68 138 138 HOH HOH A . E 4 HOH 69 142 142 HOH HOH A . E 4 HOH 70 143 143 HOH HOH A . E 4 HOH 71 144 144 HOH HOH A . E 4 HOH 72 145 145 HOH HOH A . E 4 HOH 73 146 146 HOH HOH A . E 4 HOH 74 149 149 HOH HOH A . E 4 HOH 75 150 150 HOH HOH A . E 4 HOH 76 151 151 HOH HOH A . E 4 HOH 77 152 152 HOH HOH A . E 4 HOH 78 154 154 HOH HOH A . E 4 HOH 79 156 156 HOH HOH A . E 4 HOH 80 158 158 HOH HOH A . E 4 HOH 81 159 159 HOH HOH A . E 4 HOH 82 160 160 HOH HOH A . E 4 HOH 83 161 161 HOH HOH A . E 4 HOH 84 163 163 HOH HOH A . E 4 HOH 85 164 164 HOH HOH A . E 4 HOH 86 165 165 HOH HOH A . E 4 HOH 87 166 166 HOH HOH A . E 4 HOH 88 168 168 HOH HOH A . E 4 HOH 89 169 169 HOH HOH A . E 4 HOH 90 170 170 HOH HOH A . E 4 HOH 91 172 172 HOH HOH A . E 4 HOH 92 173 173 HOH HOH A . E 4 HOH 93 176 176 HOH HOH A . E 4 HOH 94 177 177 HOH HOH A . E 4 HOH 95 178 178 HOH HOH A . E 4 HOH 96 182 182 HOH HOH A . E 4 HOH 97 184 184 HOH HOH A . E 4 HOH 98 186 186 HOH HOH A . E 4 HOH 99 187 187 HOH HOH A . E 4 HOH 100 188 188 HOH HOH A . E 4 HOH 101 190 190 HOH HOH A . E 4 HOH 102 193 193 HOH HOH A . E 4 HOH 103 194 194 HOH HOH A . E 4 HOH 104 195 195 HOH HOH A . E 4 HOH 105 196 196 HOH HOH A . E 4 HOH 106 197 197 HOH HOH A . E 4 HOH 107 198 198 HOH HOH A . E 4 HOH 108 201 201 HOH HOH A . F 4 HOH 1 28 28 HOH HOH B . F 4 HOH 2 30 30 HOH HOH B . F 4 HOH 3 32 32 HOH HOH B . F 4 HOH 4 37 37 HOH HOH B . F 4 HOH 5 40 40 HOH HOH B . F 4 HOH 6 42 42 HOH HOH B . F 4 HOH 7 43 43 HOH HOH B . F 4 HOH 8 44 44 HOH HOH B . F 4 HOH 9 45 45 HOH HOH B . F 4 HOH 10 46 46 HOH HOH B . F 4 HOH 11 49 49 HOH HOH B . F 4 HOH 12 51 51 HOH HOH B . F 4 HOH 13 52 52 HOH HOH B . F 4 HOH 14 57 57 HOH HOH B . F 4 HOH 15 63 63 HOH HOH B . F 4 HOH 16 64 64 HOH HOH B . F 4 HOH 17 65 65 HOH HOH B . F 4 HOH 18 70 70 HOH HOH B . F 4 HOH 19 75 75 HOH HOH B . F 4 HOH 20 78 78 HOH HOH B . F 4 HOH 21 79 79 HOH HOH B . F 4 HOH 22 80 80 HOH HOH B . F 4 HOH 23 82 82 HOH HOH B . F 4 HOH 24 83 83 HOH HOH B . F 4 HOH 25 84 84 HOH HOH B . F 4 HOH 26 87 87 HOH HOH B . F 4 HOH 27 88 88 HOH HOH B . F 4 HOH 28 89 89 HOH HOH B . F 4 HOH 29 92 92 HOH HOH B . F 4 HOH 30 94 94 HOH HOH B . F 4 HOH 31 96 96 HOH HOH B . F 4 HOH 32 102 102 HOH HOH B . F 4 HOH 33 104 104 HOH HOH B . F 4 HOH 34 106 106 HOH HOH B . F 4 HOH 35 111 111 HOH HOH B . F 4 HOH 36 113 113 HOH HOH B . F 4 HOH 37 117 117 HOH HOH B . F 4 HOH 38 122 122 HOH HOH B . F 4 HOH 39 125 125 HOH HOH B . F 4 HOH 40 126 126 HOH HOH B . F 4 HOH 41 127 127 HOH HOH B . F 4 HOH 42 135 135 HOH HOH B . F 4 HOH 43 136 136 HOH HOH B . F 4 HOH 44 139 139 HOH HOH B . F 4 HOH 45 140 140 HOH HOH B . F 4 HOH 46 141 141 HOH HOH B . F 4 HOH 47 147 147 HOH HOH B . F 4 HOH 48 148 148 HOH HOH B . F 4 HOH 49 153 153 HOH HOH B . F 4 HOH 50 155 155 HOH HOH B . F 4 HOH 51 157 157 HOH HOH B . F 4 HOH 52 162 162 HOH HOH B . F 4 HOH 53 167 167 HOH HOH B . F 4 HOH 54 171 171 HOH HOH B . F 4 HOH 55 174 174 HOH HOH B . F 4 HOH 56 175 175 HOH HOH B . F 4 HOH 57 179 179 HOH HOH B . F 4 HOH 58 180 180 HOH HOH B . F 4 HOH 59 181 181 HOH HOH B . F 4 HOH 60 183 183 HOH HOH B . F 4 HOH 61 185 185 HOH HOH B . F 4 HOH 62 189 189 HOH HOH B . F 4 HOH 63 191 191 HOH HOH B . F 4 HOH 64 192 192 HOH HOH B . F 4 HOH 65 199 199 HOH HOH B . F 4 HOH 66 200 200 HOH HOH B . # _software.name JACK-LEVITT _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 8BNA _cell.length_a 25.040 _cell.length_b 40.330 _cell.length_c 65.850 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 8BNA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 8BNA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.79 _exptl_crystal.density_Matthews 2.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'MG ACETATE' ? ? ? 1 4 1 'SPERMINE ACETATE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SYNTEX P1' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_diffrn_protocol ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 8BNA _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.200 _reflns.number_obs 3487 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 8BNA _refine.ls_number_reflns_obs 3594 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1910000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 693 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 8.000 # _database_PDB_matrix.entry_id 8BNA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 8BNA _struct.title 'BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 8BNA _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 8BNA _struct_ref.pdbx_db_accession 8BNA _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8BNA A 1 ? 12 ? 8BNA 1 ? 12 ? 1 12 2 1 8BNA B 1 ? 12 ? 8BNA 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 27 A HOH 187 1_555 ? ? ? ? ? ? ? 2.074 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HT 25 ? 21 'BINDING SITE FOR RESIDUE HT A 25' AC2 Software A MG 27 ? 2 'BINDING SITE FOR RESIDUE MG A 27' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 21 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 21 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 21 DC A 9 ? DC A 9 . ? 1_555 ? 5 AC1 21 DG A 10 ? DG A 10 . ? 1_555 ? 6 AC1 21 DC A 11 ? DC A 11 . ? 1_555 ? 7 AC1 21 HOH E . ? HOH A 29 . ? 1_555 ? 8 AC1 21 HOH E . ? HOH A 56 . ? 1_555 ? 9 AC1 21 HOH E . ? HOH A 66 . ? 1_555 ? 10 AC1 21 HOH E . ? HOH A 72 . ? 1_555 ? 11 AC1 21 HOH E . ? HOH A 73 . ? 1_555 ? 12 AC1 21 HOH E . ? HOH A 107 . ? 1_555 ? 13 AC1 21 DG B 4 ? DG B 16 . ? 1_555 ? 14 AC1 21 DA B 5 ? DA B 17 . ? 1_555 ? 15 AC1 21 DA B 6 ? DA B 18 . ? 1_555 ? 16 AC1 21 DT B 7 ? DT B 19 . ? 1_555 ? 17 AC1 21 DT B 8 ? DT B 20 . ? 1_555 ? 18 AC1 21 DC B 9 ? DC B 21 . ? 1_555 ? 19 AC1 21 DG B 12 ? DG B 24 . ? 2_664 ? 20 AC1 21 HOH F . ? HOH B 111 . ? 4_565 ? 21 AC1 21 HOH F . ? HOH B 141 . ? 4_465 ? 22 AC2 2 HOH E . ? HOH A 58 . ? 1_555 ? 23 AC2 2 HOH E . ? HOH A 187 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C25 A HT 25 ? B O A HOH 56 ? ? 1.80 2 1 OP2 B DG 14 ? ? O B HOH 127 ? ? 1.83 3 1 OP2 B DA 17 ? ? O B HOH 126 ? ? 1.94 4 1 "C2'" A DG 12 ? ? O A HOH 201 ? ? 1.95 5 1 O A HOH 35 ? ? O A HOH 165 ? ? 1.96 6 1 O A HOH 129 ? ? O A HOH 196 ? ? 1.99 7 1 O A HOH 55 ? ? O A HOH 154 ? ? 2.02 8 1 OP1 B DG 16 ? ? O B HOH 174 ? ? 2.08 9 1 O B HOH 51 ? ? O B HOH 167 ? ? 2.08 10 1 OP2 B DA 18 ? ? O B HOH 37 ? ? 2.08 11 1 O A HOH 36 ? ? O A HOH 170 ? ? 2.09 12 1 O B HOH 45 ? ? O B HOH 157 ? ? 2.09 13 1 OP1 A DT 8 ? ? O A HOH 120 ? ? 2.13 14 1 O A HOH 186 ? ? O B HOH 43 ? ? 2.14 15 1 O B HOH 46 ? ? O B HOH 136 ? ? 2.16 16 1 OP2 A DA 5 ? ? O A HOH 165 ? ? 2.18 17 1 O A HOH 91 ? ? O B HOH 125 ? ? 2.18 18 1 N7 B DG 16 ? ? O B HOH 200 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP2 A DG 12 ? ? 1_555 O B HOH 70 ? ? 4_565 1.69 2 1 OP1 A DG 10 ? ? 1_555 O B HOH 175 ? ? 4_465 1.89 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DC 1 ? ? C6 A DC 1 ? ? 1.393 1.339 0.054 0.008 N 2 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.349 1.388 -0.039 0.006 N 3 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.344 1.305 0.039 0.006 N 4 1 C5 A DC 3 ? ? C6 A DC 3 ? ? 1.391 1.339 0.052 0.008 N 5 1 C5 A DG 4 ? ? N7 A DG 4 ? ? 1.352 1.388 -0.036 0.006 N 6 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.350 1.305 0.045 0.006 N 7 1 C5 A DA 5 ? ? N7 A DA 5 ? ? 1.351 1.388 -0.037 0.006 N 8 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.346 1.388 -0.042 0.006 N 9 1 C5 A DT 7 ? ? C6 A DT 7 ? ? 1.393 1.339 0.054 0.007 N 10 1 C5 A DT 8 ? ? C6 A DT 8 ? ? 1.396 1.339 0.057 0.007 N 11 1 C5 A DC 9 ? ? C6 A DC 9 ? ? 1.390 1.339 0.051 0.008 N 12 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.349 1.388 -0.039 0.006 N 13 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.343 1.305 0.038 0.006 N 14 1 C5 A DC 11 ? ? C6 A DC 11 ? ? 1.391 1.339 0.052 0.008 N 15 1 C5 A DG 12 ? ? N7 A DG 12 ? ? 1.348 1.388 -0.040 0.006 N 16 1 C5 B DC 13 ? ? C6 B DC 13 ? ? 1.391 1.339 0.052 0.008 N 17 1 C5 B DG 14 ? ? N7 B DG 14 ? ? 1.346 1.388 -0.042 0.006 N 18 1 N7 B DG 14 ? ? C8 B DG 14 ? ? 1.342 1.305 0.037 0.006 N 19 1 C5 B DC 15 ? ? C6 B DC 15 ? ? 1.395 1.339 0.056 0.008 N 20 1 C5 B DG 16 ? ? N7 B DG 16 ? ? 1.349 1.388 -0.039 0.006 N 21 1 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.344 1.305 0.039 0.006 N 22 1 C5 B DA 17 ? ? N7 B DA 17 ? ? 1.347 1.388 -0.041 0.006 N 23 1 C5 B DT 19 ? ? C6 B DT 19 ? ? 1.390 1.339 0.051 0.007 N 24 1 C5 B DT 20 ? ? C6 B DT 20 ? ? 1.395 1.339 0.056 0.007 N 25 1 C5 B DC 21 ? ? C6 B DC 21 ? ? 1.394 1.339 0.055 0.008 N 26 1 C5 B DG 22 ? ? N7 B DG 22 ? ? 1.351 1.388 -0.037 0.006 N 27 1 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.345 1.305 0.040 0.006 N 28 1 C5 B DC 23 ? ? C6 B DC 23 ? ? 1.394 1.339 0.055 0.008 N 29 1 C5 B DG 24 ? ? N7 B DG 24 ? ? 1.349 1.388 -0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 102.63 109.40 -6.77 0.80 N 2 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 118.93 114.60 4.33 0.60 N 3 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 122.23 127.20 -4.97 0.60 N 4 1 C5 A DT 7 ? ? C6 A DT 7 ? ? N1 A DT 7 ? ? 119.16 123.70 -4.54 0.60 N 5 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 118.77 114.60 4.17 0.60 N 6 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.60 127.20 -4.60 0.60 N 7 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 119.41 123.70 -4.29 0.60 N 8 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 110.26 108.30 1.96 0.30 N 9 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 103.44 110.10 -6.66 1.00 N 10 1 N1 B DT 19 ? ? C2 B DT 19 ? ? N3 B DT 19 ? ? 118.51 114.60 3.91 0.60 N 11 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 122.32 127.20 -4.88 0.60 N 12 1 C5 B DT 19 ? ? C6 B DT 19 ? ? N1 B DT 19 ? ? 119.41 123.70 -4.29 0.60 N 13 1 N1 B DT 20 ? ? C2 B DT 20 ? ? N3 B DT 20 ? ? 118.58 114.60 3.98 0.60 N 14 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 122.40 127.20 -4.80 0.60 N 15 1 C5 B DT 20 ? ? C6 B DT 20 ? ? N1 B DT 20 ? ? 119.34 123.70 -4.36 0.60 N 16 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 102.80 108.00 -5.20 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 21 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.056 _pdbx_validate_planes.type 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL DRUG ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL DRUG ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 HT O1 O N N 147 HT C1 C Y N 148 HT C4 C Y N 149 HT C2 C Y N 150 HT C3 C Y N 151 HT C6 C Y N 152 HT C5 C Y N 153 HT C7 C Y N 154 HT N1 N Y N 155 HT C8 C Y N 156 HT C9 C Y N 157 HT N2 N Y N 158 HT C10 C Y N 159 HT C11 C Y N 160 HT C12 C Y N 161 HT C13 C Y N 162 HT C14 C Y N 163 HT N3 N Y N 164 HT C15 C Y N 165 HT C16 C Y N 166 HT N4 N Y N 167 HT C17 C Y N 168 HT C18 C Y N 169 HT C19 C Y N 170 HT C20 C Y N 171 HT N5 N N N 172 HT C21 C N N 173 HT C22 C N N 174 HT N6 N N N 175 HT C23 C N N 176 HT C24 C N N 177 HT C25 C N N 178 HT HO1 H N N 179 HT H2 H N N 180 HT H3 H N N 181 HT H5 H N N 182 HT H6 H N N 183 HT HN1 H N N 184 HT H10 H N N 185 HT H11 H N N 186 HT H13 H N N 187 HT HN3 H N N 188 HT H17 H N N 189 HT H18 H N N 190 HT H20 H N N 191 HT H211 H N N 192 HT H212 H N N 193 HT H221 H N N 194 HT H222 H N N 195 HT H231 H N N 196 HT H232 H N N 197 HT H241 H N N 198 HT H242 H N N 199 HT H253 H N N 200 HT H252 H N N 201 HT H251 H N N 202 MG MG MG N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 HT O1 C1 sing N N 152 HT O1 HO1 sing N N 153 HT C1 C2 doub Y N 154 HT C1 C6 sing Y N 155 HT C2 C3 sing Y N 156 HT C2 H2 sing N N 157 HT C3 C4 doub Y N 158 HT C3 H3 sing N N 159 HT C4 C5 sing Y N 160 HT C4 C7 sing Y N 161 HT C5 C6 doub Y N 162 HT C5 H5 sing N N 163 HT C6 H6 sing N N 164 HT C7 N1 sing Y N 165 HT C7 N2 doub Y N 166 HT N1 C8 sing Y N 167 HT N1 HN1 sing N N 168 HT C8 C9 doub Y N 169 HT C8 C13 sing Y N 170 HT C9 N2 sing Y N 171 HT C9 C10 sing Y N 172 HT C10 C11 doub Y N 173 HT C10 H10 sing N N 174 HT C11 C12 sing Y N 175 HT C11 H11 sing N N 176 HT C12 C13 doub Y N 177 HT C12 C14 sing Y N 178 HT C13 H13 sing N N 179 HT C14 N3 sing Y N 180 HT C14 N4 doub Y N 181 HT N3 C15 sing Y N 182 HT N3 HN3 sing N N 183 HT C15 C16 doub Y N 184 HT C15 C20 sing Y N 185 HT C16 N4 sing Y N 186 HT C16 C17 sing Y N 187 HT C17 C18 doub Y N 188 HT C17 H17 sing N N 189 HT C18 C19 sing Y N 190 HT C18 H18 sing N N 191 HT C19 C20 doub Y N 192 HT C19 N5 sing N N 193 HT C20 H20 sing N N 194 HT N5 C21 sing N N 195 HT N5 C24 sing N N 196 HT C21 C22 sing N N 197 HT C21 H211 sing N N 198 HT C21 H212 sing N N 199 HT C22 N6 sing N N 200 HT C22 H221 sing N N 201 HT C22 H222 sing N N 202 HT N6 C23 sing N N 203 HT N6 C25 sing N N 204 HT C23 C24 sing N N 205 HT C23 H231 sing N N 206 HT C23 H232 sing N N 207 HT C24 H241 sing N N 208 HT C24 H242 sing N N 209 HT C25 H253 sing N N 210 HT C25 H252 sing N N 211 HT C25 H251 sing N N 212 # _ndb_struct_conf_na.entry_id 8BNA _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.070 0.128 0.043 7.649 -18.814 -2.750 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.050 0.022 0.197 -1.035 -19.851 -4.273 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.138 -0.092 0.446 -7.107 -19.688 0.930 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -1.214 -0.248 0.249 11.422 -7.855 -3.117 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.056 0.244 -0.560 -0.551 -19.687 1.165 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.534 -0.078 0.440 1.257 -22.780 0.850 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 1.038 0.143 0.402 -5.660 -21.213 11.064 7 A_DT7:DA18_B A 7 ? B 18 ? ? 1 1 A DT 8 1_555 B DA 5 1_555 -0.012 -0.166 0.060 -10.683 -21.357 -3.015 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 -0.083 -0.037 -0.005 -12.390 -14.430 -4.999 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.075 -0.084 -0.473 -4.959 -8.818 3.673 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.094 0.106 0.302 4.598 -27.091 -3.623 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.325 -0.030 0.045 9.513 3.282 -5.199 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.406 0.060 3.677 -3.701 8.616 36.245 -1.192 0.081 3.619 13.572 5.830 37.399 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 1.041 0.520 3.532 2.837 -9.225 37.921 1.969 -1.189 3.385 -13.922 -4.281 39.087 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.216 0.681 3.017 3.962 5.657 24.677 0.026 1.543 3.024 12.916 -9.045 25.611 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.253 -0.065 3.788 4.388 6.750 41.736 -0.880 0.863 3.691 9.370 -6.091 42.471 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.330 -0.253 2.995 -7.810 3.836 36.443 -0.849 -1.441 2.827 6.028 12.275 37.433 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.486 -0.510 3.539 0.853 1.308 38.310 -0.954 -0.625 3.530 1.992 -1.299 38.340 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -1.059 -0.130 3.308 1.918 3.561 30.428 -0.946 2.377 3.201 6.747 -3.635 30.689 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.093 0.157 3.324 -0.814 -3.612 37.583 0.716 0.037 3.297 -5.590 1.260 37.758 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.377 1.406 3.423 1.488 6.687 30.727 1.224 -0.391 3.654 12.427 -2.764 31.463 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.970 0.967 3.237 -8.066 -12.308 40.549 2.509 0.542 2.968 -17.094 11.202 43.031 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.451 0.906 3.439 4.362 -2.218 37.847 1.680 -0.110 3.412 -3.402 -6.691 38.151 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 8BNA _atom_sites.fract_transf_matrix[1][1] 0.039936 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024795 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015186 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_