data_8CYF # _entry.id 8CYF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8CYF pdb_00008cyf 10.2210/pdb8cyf/pdb WWPDB D_1000265691 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'WhiB3 and SigA4 crystal structure without DNA in P43212 space group' 8CWT unspecified PDB 'WhiB3 and SigA4 crystal structure without DNA in R3 space group' 8CWR unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8CYF _pdbx_database_status.recvd_initial_deposition_date 2022-05-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wan, T.' 1 0000-0003-1833-2540 'Zhang, L.M.' 2 0000-0001-6807-5103 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 299 _citation.language ? _citation.page_first 104777 _citation.page_last 104777 _citation.title 'Structural basis of DNA binding by the WhiB-like transcription factor WhiB3 in Mycobacterium tuberculosis.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2023.104777 _citation.pdbx_database_id_PubMed 37142222 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wan, T.' 1 ? primary 'Horova, M.' 2 ? primary 'Khetrapal, V.' 3 ? primary 'Li, S.' 4 ? primary 'Jones, C.' 5 ? primary 'Schacht, A.' 6 ? primary 'Sun, X.' 7 ? primary 'Zhang, L.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8CYF _cell.details ? _cell.formula_units_Z ? _cell.length_a 50.697 _cell.length_a_esd ? _cell.length_b 72.934 _cell.length_b_esd ? _cell.length_c 95.380 _cell.length_c_esd ? _cell.volume 352670.888 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8CYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Redox- and pH-responsive transcriptional regulator WhiB3' 11630.262 1 ? ? ? 'Full WhiB3 sequence was used for crystallization, the N- and C- terminal residues are not visible due to flexibility.' 2 polymer man 'RNA polymerase sigma factor, DNA-directed RNA polymerase subunit beta chimera,DNA-directed RNA polymerase subunit beta' 12650.234 1 2.7.7.6 ? ? ;The last 82 residues in the C-terminal of the primary sigma factor was fused with the flap tip helix (T815-A829) from RNA polymerase beta subunit, with six histidine tag in the N-terminal,The last 82 residues in the C-terminal of the primary sigma factor was fused with the flap tip helix (T815-A829) from RNA polymerase beta subunit, with six histidine tag in the N-terminal ; 3 polymer syn ;DNA (5'-D(*GP*AP*AP*AP*AP*TP*CP*GP*GP*TP*TP*GP*TP*GP*GP*T)-3') ; 4993.250 1 ? ? ? 'DNA sequence from WhiB7 promoter' 4 polymer syn ;DNA (5'-D(*CP*AP*CP*CP*AP*CP*AP*AP*CP*CP*GP*AP*TP*TP*TP*T)-3') ; 4802.144 1 ? ? ? 'DNA sequence from WhiB7 promoter' 5 non-polymer syn 'IRON/SULFUR CLUSTER' 351.640 1 ? ? ? ? 6 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 7 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGGLS ESERDLLLKGTMGRTRGIRRTA ; ;MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGGLS ESERDLLLKGTMGRTRGIRRTA ; A ? 2 'polypeptide(L)' no no ;MAHHHHHHVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP SRSQVLRDYLDGSSGSGTPEERLLRAIFGEKA ; ;MAHHHHHHVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP SRSQVLRDYLDGSSGSGTPEERLLRAIFGEKA ; B ? 3 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DA)(DA)(DT)(DC)(DG)(DG)(DT)(DT)(DG)(DT)(DG)(DG)(DT)' GAAAATCGGTTGTGGT C ? 4 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DC)(DA)(DC)(DA)(DA)(DC)(DC)(DG)(DA)(DT)(DT)(DT)(DT)' CACCACAACCGATTTT D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 GLN n 1 4 PRO n 1 5 GLU n 1 6 GLN n 1 7 LEU n 1 8 PRO n 1 9 GLY n 1 10 PRO n 1 11 ASN n 1 12 ALA n 1 13 ASP n 1 14 ILE n 1 15 TRP n 1 16 ASN n 1 17 TRP n 1 18 GLN n 1 19 LEU n 1 20 GLN n 1 21 GLY n 1 22 LEU n 1 23 CYS n 1 24 ARG n 1 25 GLY n 1 26 MET n 1 27 ASP n 1 28 SER n 1 29 SER n 1 30 MET n 1 31 PHE n 1 32 PHE n 1 33 HIS n 1 34 PRO n 1 35 ASP n 1 36 GLY n 1 37 GLU n 1 38 ARG n 1 39 GLY n 1 40 ARG n 1 41 ALA n 1 42 ARG n 1 43 THR n 1 44 GLN n 1 45 ARG n 1 46 GLU n 1 47 GLN n 1 48 ARG n 1 49 ALA n 1 50 LYS n 1 51 GLU n 1 52 MET n 1 53 CYS n 1 54 ARG n 1 55 ARG n 1 56 CYS n 1 57 PRO n 1 58 VAL n 1 59 ILE n 1 60 GLU n 1 61 ALA n 1 62 CYS n 1 63 ARG n 1 64 SER n 1 65 HIS n 1 66 ALA n 1 67 LEU n 1 68 GLU n 1 69 VAL n 1 70 GLY n 1 71 GLU n 1 72 PRO n 1 73 TYR n 1 74 GLY n 1 75 VAL n 1 76 TRP n 1 77 GLY n 1 78 GLY n 1 79 LEU n 1 80 SER n 1 81 GLU n 1 82 SER n 1 83 GLU n 1 84 ARG n 1 85 ASP n 1 86 LEU n 1 87 LEU n 1 88 LEU n 1 89 LYS n 1 90 GLY n 1 91 THR n 1 92 MET n 1 93 GLY n 1 94 ARG n 1 95 THR n 1 96 ARG n 1 97 GLY n 1 98 ILE n 1 99 ARG n 1 100 ARG n 1 101 THR n 1 102 ALA n 2 1 MET n 2 2 ALA n 2 3 HIS n 2 4 HIS n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 VAL n 2 10 ALA n 2 11 VAL n 2 12 ASP n 2 13 ALA n 2 14 VAL n 2 15 SER n 2 16 PHE n 2 17 THR n 2 18 LEU n 2 19 LEU n 2 20 GLN n 2 21 ASP n 2 22 GLN n 2 23 LEU n 2 24 GLN n 2 25 SER n 2 26 VAL n 2 27 LEU n 2 28 ASP n 2 29 THR n 2 30 LEU n 2 31 SER n 2 32 GLU n 2 33 ARG n 2 34 GLU n 2 35 ALA n 2 36 GLY n 2 37 VAL n 2 38 VAL n 2 39 ARG n 2 40 LEU n 2 41 ARG n 2 42 PHE n 2 43 GLY n 2 44 LEU n 2 45 THR n 2 46 ASP n 2 47 GLY n 2 48 GLN n 2 49 PRO n 2 50 ARG n 2 51 THR n 2 52 LEU n 2 53 ASP n 2 54 GLU n 2 55 ILE n 2 56 GLY n 2 57 GLN n 2 58 VAL n 2 59 TYR n 2 60 GLY n 2 61 VAL n 2 62 THR n 2 63 ARG n 2 64 GLU n 2 65 ARG n 2 66 ILE n 2 67 ARG n 2 68 GLN n 2 69 ILE n 2 70 GLU n 2 71 SER n 2 72 LYS n 2 73 THR n 2 74 MET n 2 75 SER n 2 76 LYS n 2 77 LEU n 2 78 ARG n 2 79 HIS n 2 80 PRO n 2 81 SER n 2 82 ARG n 2 83 SER n 2 84 GLN n 2 85 VAL n 2 86 LEU n 2 87 ARG n 2 88 ASP n 2 89 TYR n 2 90 LEU n 2 91 ASP n 2 92 GLY n 2 93 SER n 2 94 SER n 2 95 GLY n 2 96 SER n 2 97 GLY n 2 98 THR n 2 99 PRO n 2 100 GLU n 2 101 GLU n 2 102 ARG n 2 103 LEU n 2 104 LEU n 2 105 ARG n 2 106 ALA n 2 107 ILE n 2 108 PHE n 2 109 GLY n 2 110 GLU n 2 111 LYS n 2 112 ALA n 3 1 DG n 3 2 DA n 3 3 DA n 3 4 DA n 3 5 DA n 3 6 DT n 3 7 DC n 3 8 DG n 3 9 DG n 3 10 DT n 3 11 DT n 3 12 DG n 3 13 DT n 3 14 DG n 3 15 DG n 3 16 DT n 4 1 DC n 4 2 DA n 4 3 DC n 4 4 DC n 4 5 DA n 4 6 DC n 4 7 DA n 4 8 DA n 4 9 DC n 4 10 DC n 4 11 DG n 4 12 DA n 4 13 DT n 4 14 DT n 4 15 DT n 4 16 DT n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 102 ? ? 'whiB3, Rv3416' ? 'ATCC 25618 / H37Rv' ? ? ? ? 'Mycobacterium tuberculosis' 1773 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 91 ? ? 'sigA, ERS007670_01286, ERS007681_03833, ERS007688_01862' ? ? ? ? ? ? 'Mycobacterium tuberculosis' 1773 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 2 sample 'Biological sequence' 92 112 ? ? ? ? ? ? ? ? ? 'Mycobacterium tuberculosis' 1773 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 3 1 sample 1 16 'Mycobacterium tuberculosis' ? 1773 ? 4 1 sample 1 16 'Mycobacterium tuberculosis' ? 1773 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP WHIB3_MYCTU P9WF41 ? 1 ;MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGGLS ESERDLLLKGTMGRTRGIRRTA ; 1 2 UNP A0A654TMB9_MYCTX A0A654TMB9 ? 2 ;VAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD YLD ; 295 3 UNP RPOB_MYCBP A1KGE7 ? 2 TPEERLLRAIFGEKA 815 4 PDB 8CYF 8CYF ? 3 ? 1 5 PDB 8CYF 8CYF ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8CYF A 1 ? 102 ? P9WF41 1 ? 102 ? 1 102 2 2 8CYF B 9 ? 91 ? A0A654TMB9 295 ? 377 ? 446 528 3 3 8CYF B 98 ? 112 ? A1KGE7 815 ? 829 ? 535 549 4 4 8CYF C 1 ? 16 ? 8CYF 1 ? 16 ? 1 16 5 5 8CYF D 1 ? 16 ? 8CYF 1 ? 16 ? 1 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 8CYF MET B 1 ? UNP A0A654TMB9 ? ? 'expression tag' 438 1 2 8CYF ALA B 2 ? UNP A0A654TMB9 ? ? 'expression tag' 439 2 2 8CYF HIS B 3 ? UNP A0A654TMB9 ? ? 'expression tag' 440 3 2 8CYF HIS B 4 ? UNP A0A654TMB9 ? ? 'expression tag' 441 4 2 8CYF HIS B 5 ? UNP A0A654TMB9 ? ? 'expression tag' 442 5 2 8CYF HIS B 6 ? UNP A0A654TMB9 ? ? 'expression tag' 443 6 2 8CYF HIS B 7 ? UNP A0A654TMB9 ? ? 'expression tag' 444 7 2 8CYF HIS B 8 ? UNP A0A654TMB9 ? ? 'expression tag' 445 8 2 8CYF GLY B 92 ? UNP A0A654TMB9 ? ? linker 529 9 2 8CYF SER B 93 ? UNP A0A654TMB9 ? ? linker 530 10 2 8CYF SER B 94 ? UNP A0A654TMB9 ? ? linker 531 11 2 8CYF GLY B 95 ? UNP A0A654TMB9 ? ? linker 532 12 2 8CYF SER B 96 ? UNP A0A654TMB9 ? ? linker 533 13 2 8CYF GLY B 97 ? UNP A0A654TMB9 ? ? linker 534 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SF4 non-polymer . 'IRON/SULFUR CLUSTER' ? 'Fe4 S4' 351.640 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8CYF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.6 _exptl_crystal.description 'Large diamond-shaped crystals' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details 'Room temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Ca(Ac)2, 0.1 M Na Cacodylate, pH 6.5, 10%~13% PEG8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'Collected under liquid nitrogen stream' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-05-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9787 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9787 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 66.33 _reflns.entry_id 8CYF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.44 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13547 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 15.3 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.886 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.132 _reflns.pdbx_Rpim_I_all 0.034 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.987 _reflns.pdbx_CC_star 0.994 _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 2.44 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.19 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 617 _reflns_shell.percent_possible_all 94.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.344 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.469 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.508 _reflns_shell.pdbx_Rpim_I_all 1.441 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.713 _reflns_shell.pdbx_CC_star 0.912 _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 80.27 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8CYF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.44 _refine.ls_d_res_low 38.15 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13476 _refine.ls_number_reflns_R_free 673 _refine.ls_number_reflns_R_work 12803 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.84 _refine.ls_percent_reflns_R_free 4.99 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2238 _refine.ls_R_factor_R_free 0.2513 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2224 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8CWR _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.0463 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3954 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.44 _refine_hist.d_res_low 38.15 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 1974 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1308 _refine_hist.pdbx_number_atoms_nucleic_acid 650 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0175 ? 2069 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.2275 ? 2924 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.2125 ? 321 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0115 ? 268 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 27.0476 ? 833 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.44 2.63 . . 117 2431 95.83 . . . 0.4256 . 0.3850 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.63 2.90 . . 155 2514 99.55 . . . 0.3025 . 0.2798 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.90 3.32 . . 142 2556 99.85 . . . 0.2863 . 0.2672 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.32 4.18 . . 119 2607 99.85 . . . 0.2384 . 0.2150 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.18 38.15 . . 140 2695 99.06 . . . 0.2233 . 0.1910 . . . . . . . . . . . # _struct.entry_id 8CYF _struct.title 'WhiB3 bound to SigmaAr4-RNAP Beta flap tip chimera and DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8CYF _struct_keywords.text 'redox sensor, transcriptional factor, protein-DNA complex, TRANSCRIPTION, TRANSCRIPTION-DNA-Transferase complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA/Transferase # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 16 ? GLY A 21 ? ASN A 16 GLY A 21 5 ? 6 HELX_P HELX_P2 AA2 ASP A 27 ? PHE A 31 ? ASP A 27 PHE A 31 5 ? 5 HELX_P HELX_P3 AA3 ARG A 38 ? ARG A 55 ? ARG A 38 ARG A 55 1 ? 18 HELX_P HELX_P4 AA4 VAL A 58 ? GLY A 70 ? VAL A 58 GLY A 70 1 ? 13 HELX_P HELX_P5 AA5 SER A 80 ? LYS A 89 ? SER A 80 LYS A 89 1 ? 10 HELX_P HELX_P6 AA6 SER B 15 ? ASP B 28 ? SER B 452 ASP B 465 1 ? 14 HELX_P HELX_P7 AA7 SER B 31 ? GLY B 43 ? SER B 468 GLY B 480 1 ? 13 HELX_P HELX_P8 AA8 THR B 51 ? GLY B 60 ? THR B 488 GLY B 497 1 ? 10 HELX_P HELX_P9 AA9 THR B 62 ? ARG B 78 ? THR B 499 ARG B 515 1 ? 17 HELX_P HELX_P10 AB1 HIS B 79 ? SER B 83 ? HIS B 516 SER B 520 5 ? 5 HELX_P HELX_P11 AB2 THR B 98 ? PHE B 108 ? THR B 535 PHE B 545 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 23 SG ? ? ? 1_555 E SF4 . FE4 ? ? A CYS 23 A SF4 200 1_555 ? ? ? ? ? ? ? 2.269 ? ? metalc2 metalc ? ? A CYS 53 SG ? ? ? 1_555 E SF4 . FE1 ? ? A CYS 53 A SF4 200 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc3 metalc ? ? A CYS 56 SG ? ? ? 1_555 E SF4 . FE2 ? ? A CYS 56 A SF4 200 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc4 metalc ? ? A CYS 62 SG ? ? ? 1_555 E SF4 . FE3 ? ? A CYS 62 A SF4 200 1_555 ? ? ? ? ? ? ? 2.233 ? ? hydrog1 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 16 N3 ? ? C DA 2 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 16 O4 ? ? C DA 2 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 15 N3 ? ? C DA 3 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 15 O4 ? ? C DA 3 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 14 N3 ? ? C DA 4 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 14 O4 ? ? C DA 4 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 13 N3 ? ? C DA 5 D DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 13 O4 ? ? C DA 5 D DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 12 N1 ? ? C DT 6 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 12 N6 ? ? C DT 6 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 7 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 7 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 7 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 8 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 8 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 8 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 9 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 9 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 9 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 10 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 10 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DT 11 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 11 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 11 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 11 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 12 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 12 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 12 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DT 13 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 13 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 13 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 13 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 14 N1 ? ? ? 1_555 D DC 4 N3 ? ? C DG 14 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 14 N2 ? ? ? 1_555 D DC 4 O2 ? ? C DG 14 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 14 O6 ? ? ? 1_555 D DC 4 N4 ? ? C DG 14 D DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 15 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 15 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 15 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 15 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 15 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 15 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 16 N3 ? ? ? 1_555 D DA 2 N1 ? ? C DT 16 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 16 O4 ? ? ? 1_555 D DA 2 N6 ? ? C DT 16 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8CYF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019725 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013711 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010484 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source AS ? ? 25.88022 7.02060 ? ? 1.67971 31.58991 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? FE ? ? 20.90327 4.99816 ? ? 2.55100 38.46870 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 PRO 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 GLN 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 PRO 8 8 ? ? ? A . n A 1 9 GLY 9 9 ? ? ? A . n A 1 10 PRO 10 10 ? ? ? A . n A 1 11 ASN 11 11 ? ? ? A . n A 1 12 ALA 12 12 ? ? ? A . n A 1 13 ASP 13 13 ? ? ? A . n A 1 14 ILE 14 14 ? ? ? A . n A 1 15 TRP 15 15 ? ? ? A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 CYS 62 62 62 CYS CYS A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 TRP 76 76 76 TRP TRP A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 THR 91 91 ? ? ? A . n A 1 92 MET 92 92 ? ? ? A . n A 1 93 GLY 93 93 ? ? ? A . n A 1 94 ARG 94 94 ? ? ? A . n A 1 95 THR 95 95 ? ? ? A . n A 1 96 ARG 96 96 ? ? ? A . n A 1 97 GLY 97 97 ? ? ? A . n A 1 98 ILE 98 98 ? ? ? A . n A 1 99 ARG 99 99 ? ? ? A . n A 1 100 ARG 100 100 ? ? ? A . n A 1 101 THR 101 101 ? ? ? A . n A 1 102 ALA 102 102 ? ? ? A . n B 2 1 MET 1 438 ? ? ? B . n B 2 2 ALA 2 439 ? ? ? B . n B 2 3 HIS 3 440 ? ? ? B . n B 2 4 HIS 4 441 ? ? ? B . n B 2 5 HIS 5 442 ? ? ? B . n B 2 6 HIS 6 443 ? ? ? B . n B 2 7 HIS 7 444 ? ? ? B . n B 2 8 HIS 8 445 ? ? ? B . n B 2 9 VAL 9 446 ? ? ? B . n B 2 10 ALA 10 447 ? ? ? B . n B 2 11 VAL 11 448 ? ? ? B . n B 2 12 ASP 12 449 ? ? ? B . n B 2 13 ALA 13 450 450 ALA ALA B . n B 2 14 VAL 14 451 451 VAL VAL B . n B 2 15 SER 15 452 452 SER SER B . n B 2 16 PHE 16 453 453 PHE PHE B . n B 2 17 THR 17 454 454 THR THR B . n B 2 18 LEU 18 455 455 LEU LEU B . n B 2 19 LEU 19 456 456 LEU LEU B . n B 2 20 GLN 20 457 457 GLN GLN B . n B 2 21 ASP 21 458 458 ASP ASP B . n B 2 22 GLN 22 459 459 GLN GLN B . n B 2 23 LEU 23 460 460 LEU LEU B . n B 2 24 GLN 24 461 461 GLN GLN B . n B 2 25 SER 25 462 462 SER SER B . n B 2 26 VAL 26 463 463 VAL VAL B . n B 2 27 LEU 27 464 464 LEU LEU B . n B 2 28 ASP 28 465 465 ASP ASP B . n B 2 29 THR 29 466 466 THR THR B . n B 2 30 LEU 30 467 467 LEU LEU B . n B 2 31 SER 31 468 468 SER SER B . n B 2 32 GLU 32 469 469 GLU GLU B . n B 2 33 ARG 33 470 470 ARG ARG B . n B 2 34 GLU 34 471 471 GLU GLU B . n B 2 35 ALA 35 472 472 ALA ALA B . n B 2 36 GLY 36 473 473 GLY GLY B . n B 2 37 VAL 37 474 474 VAL VAL B . n B 2 38 VAL 38 475 475 VAL VAL B . n B 2 39 ARG 39 476 476 ARG ARG B . n B 2 40 LEU 40 477 477 LEU LEU B . n B 2 41 ARG 41 478 478 ARG ARG B . n B 2 42 PHE 42 479 479 PHE PHE B . n B 2 43 GLY 43 480 480 GLY GLY B . n B 2 44 LEU 44 481 481 LEU LEU B . n B 2 45 THR 45 482 482 THR THR B . n B 2 46 ASP 46 483 483 ASP ASP B . n B 2 47 GLY 47 484 484 GLY GLY B . n B 2 48 GLN 48 485 485 GLN GLN B . n B 2 49 PRO 49 486 486 PRO PRO B . n B 2 50 ARG 50 487 487 ARG ARG B . n B 2 51 THR 51 488 488 THR THR B . n B 2 52 LEU 52 489 489 LEU LEU B . n B 2 53 ASP 53 490 490 ASP ASP B . n B 2 54 GLU 54 491 491 GLU GLU B . n B 2 55 ILE 55 492 492 ILE ILE B . n B 2 56 GLY 56 493 493 GLY GLY B . n B 2 57 GLN 57 494 494 GLN GLN B . n B 2 58 VAL 58 495 495 VAL VAL B . n B 2 59 TYR 59 496 496 TYR TYR B . n B 2 60 GLY 60 497 497 GLY GLY B . n B 2 61 VAL 61 498 498 VAL VAL B . n B 2 62 THR 62 499 499 THR THR B . n B 2 63 ARG 63 500 500 ARG ARG B . n B 2 64 GLU 64 501 501 GLU GLU B . n B 2 65 ARG 65 502 502 ARG ARG B . n B 2 66 ILE 66 503 503 ILE ILE B . n B 2 67 ARG 67 504 504 ARG ARG B . n B 2 68 GLN 68 505 505 GLN GLN B . n B 2 69 ILE 69 506 506 ILE ILE B . n B 2 70 GLU 70 507 507 GLU GLU B . n B 2 71 SER 71 508 508 SER SER B . n B 2 72 LYS 72 509 509 LYS LYS B . n B 2 73 THR 73 510 510 THR THR B . n B 2 74 MET 74 511 511 MET MET B . n B 2 75 SER 75 512 512 SER SER B . n B 2 76 LYS 76 513 513 LYS LYS B . n B 2 77 LEU 77 514 514 LEU LEU B . n B 2 78 ARG 78 515 515 ARG ARG B . n B 2 79 HIS 79 516 516 HIS HIS B . n B 2 80 PRO 80 517 517 PRO PRO B . n B 2 81 SER 81 518 518 SER SER B . n B 2 82 ARG 82 519 519 ARG ARG B . n B 2 83 SER 83 520 520 SER SER B . n B 2 84 GLN 84 521 521 GLN GLN B . n B 2 85 VAL 85 522 522 VAL VAL B . n B 2 86 LEU 86 523 523 LEU LEU B . n B 2 87 ARG 87 524 524 ARG ARG B . n B 2 88 ASP 88 525 525 ASP ASP B . n B 2 89 TYR 89 526 ? ? ? B . n B 2 90 LEU 90 527 ? ? ? B . n B 2 91 ASP 91 528 ? ? ? B . n B 2 92 GLY 92 529 ? ? ? B . n B 2 93 SER 93 530 ? ? ? B . n B 2 94 SER 94 531 ? ? ? B . n B 2 95 GLY 95 532 ? ? ? B . n B 2 96 SER 96 533 ? ? ? B . n B 2 97 GLY 97 534 534 GLY GLY B . n B 2 98 THR 98 535 535 THR THR B . n B 2 99 PRO 99 536 536 PRO PRO B . n B 2 100 GLU 100 537 537 GLU GLU B . n B 2 101 GLU 101 538 538 GLU GLU B . n B 2 102 ARG 102 539 539 ARG ARG B . n B 2 103 LEU 103 540 540 LEU LEU B . n B 2 104 LEU 104 541 541 LEU LEU B . n B 2 105 ARG 105 542 542 ARG ARG B . n B 2 106 ALA 106 543 543 ALA ALA B . n B 2 107 ILE 107 544 544 ILE ILE B . n B 2 108 PHE 108 545 545 PHE PHE B . n B 2 109 GLY 109 546 546 GLY GLY B . n B 2 110 GLU 110 547 ? ? ? B . n B 2 111 LYS 111 548 ? ? ? B . n B 2 112 ALA 112 549 ? ? ? B . n C 3 1 DG 1 1 1 DG DG C . n C 3 2 DA 2 2 2 DA DA C . n C 3 3 DA 3 3 3 DA DA C . n C 3 4 DA 4 4 4 DA DA C . n C 3 5 DA 5 5 5 DA DA C . n C 3 6 DT 6 6 6 DT DT C . n C 3 7 DC 7 7 7 DC DC C . n C 3 8 DG 8 8 8 DG DG C . n C 3 9 DG 9 9 9 DG DG C . n C 3 10 DT 10 10 10 DT DT C . n C 3 11 DT 11 11 11 DT DT C . n C 3 12 DG 12 12 12 DG DG C . n C 3 13 DT 13 13 13 DT DT C . n C 3 14 DG 14 14 14 DG DG C . n C 3 15 DG 15 15 15 DG DG C . n C 3 16 DT 16 16 16 DT DT C . n D 4 1 DC 1 1 1 DC DC D . n D 4 2 DA 2 2 2 DA DA D . n D 4 3 DC 3 3 3 DC DC D . n D 4 4 DC 4 4 4 DC DC D . n D 4 5 DA 5 5 5 DA DA D . n D 4 6 DC 6 6 6 DC DC D . n D 4 7 DA 7 7 7 DA DA D . n D 4 8 DA 8 8 8 DA DA D . n D 4 9 DC 9 9 9 DC DC D . n D 4 10 DC 10 10 10 DC DC D . n D 4 11 DG 11 11 11 DG DG D . n D 4 12 DA 12 12 12 DA DA D . n D 4 13 DT 13 13 13 DT DT D . n D 4 14 DT 14 14 14 DT DT D . n D 4 15 DT 15 15 15 DT DT D . n D 4 16 DT 16 16 16 DT DT D . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email limei.zhang@unl.edu _pdbx_contact_author.name_first Limei _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6807-5103 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SF4 1 200 200 SF4 SF4 A . F 6 CAC 1 601 601 CAC CAC B . G 7 HOH 1 301 1 HOH HOH A . H 7 HOH 1 701 2 HOH HOH B . H 7 HOH 2 702 3 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 23 ? A CYS 23 ? 1_555 FE4 ? E SF4 . ? A SF4 200 ? 1_555 S1 ? E SF4 . ? A SF4 200 ? 1_555 120.2 ? 2 SG ? A CYS 23 ? A CYS 23 ? 1_555 FE4 ? E SF4 . ? A SF4 200 ? 1_555 S2 ? E SF4 . ? A SF4 200 ? 1_555 120.7 ? 3 S1 ? E SF4 . ? A SF4 200 ? 1_555 FE4 ? E SF4 . ? A SF4 200 ? 1_555 S2 ? E SF4 . ? A SF4 200 ? 1_555 96.1 ? 4 SG ? A CYS 23 ? A CYS 23 ? 1_555 FE4 ? E SF4 . ? A SF4 200 ? 1_555 S3 ? E SF4 . ? A SF4 200 ? 1_555 116.4 ? 5 S1 ? E SF4 . ? A SF4 200 ? 1_555 FE4 ? E SF4 . ? A SF4 200 ? 1_555 S3 ? E SF4 . ? A SF4 200 ? 1_555 100.3 ? 6 S2 ? E SF4 . ? A SF4 200 ? 1_555 FE4 ? E SF4 . ? A SF4 200 ? 1_555 S3 ? E SF4 . ? A SF4 200 ? 1_555 98.6 ? 7 SG ? A CYS 53 ? A CYS 53 ? 1_555 FE1 ? E SF4 . ? A SF4 200 ? 1_555 S2 ? E SF4 . ? A SF4 200 ? 1_555 119.9 ? 8 SG ? A CYS 53 ? A CYS 53 ? 1_555 FE1 ? E SF4 . ? A SF4 200 ? 1_555 S3 ? E SF4 . ? A SF4 200 ? 1_555 120.9 ? 9 S2 ? E SF4 . ? A SF4 200 ? 1_555 FE1 ? E SF4 . ? A SF4 200 ? 1_555 S3 ? E SF4 . ? A SF4 200 ? 1_555 102.9 ? 10 SG ? A CYS 53 ? A CYS 53 ? 1_555 FE1 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 108.0 ? 11 S2 ? E SF4 . ? A SF4 200 ? 1_555 FE1 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 98.8 ? 12 S3 ? E SF4 . ? A SF4 200 ? 1_555 FE1 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 103.0 ? 13 SG ? A CYS 56 ? A CYS 56 ? 1_555 FE2 ? E SF4 . ? A SF4 200 ? 1_555 S1 ? E SF4 . ? A SF4 200 ? 1_555 120.1 ? 14 SG ? A CYS 56 ? A CYS 56 ? 1_555 FE2 ? E SF4 . ? A SF4 200 ? 1_555 S3 ? E SF4 . ? A SF4 200 ? 1_555 110.4 ? 15 S1 ? E SF4 . ? A SF4 200 ? 1_555 FE2 ? E SF4 . ? A SF4 200 ? 1_555 S3 ? E SF4 . ? A SF4 200 ? 1_555 103.1 ? 16 SG ? A CYS 56 ? A CYS 56 ? 1_555 FE2 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 123.7 ? 17 S1 ? E SF4 . ? A SF4 200 ? 1_555 FE2 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 95.7 ? 18 S3 ? E SF4 . ? A SF4 200 ? 1_555 FE2 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 100.3 ? 19 SG ? A CYS 62 ? A CYS 62 ? 1_555 FE3 ? E SF4 . ? A SF4 200 ? 1_555 S1 ? E SF4 . ? A SF4 200 ? 1_555 123.1 ? 20 SG ? A CYS 62 ? A CYS 62 ? 1_555 FE3 ? E SF4 . ? A SF4 200 ? 1_555 S2 ? E SF4 . ? A SF4 200 ? 1_555 121.7 ? 21 S1 ? E SF4 . ? A SF4 200 ? 1_555 FE3 ? E SF4 . ? A SF4 200 ? 1_555 S2 ? E SF4 . ? A SF4 200 ? 1_555 97.2 ? 22 SG ? A CYS 62 ? A CYS 62 ? 1_555 FE3 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 115.6 ? 23 S1 ? E SF4 . ? A SF4 200 ? 1_555 FE3 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 95.0 ? 24 S2 ? E SF4 . ? A SF4 200 ? 1_555 FE3 ? E SF4 . ? A SF4 200 ? 1_555 S4 ? E SF4 . ? A SF4 200 ? 1_555 98.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-17 2 'Structure model' 1 1 2023-06-07 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_struct_assembly 2 2 'Structure model' pdbx_struct_assembly_gen 3 2 'Structure model' pdbx_struct_assembly_prop 4 3 'Structure model' citation 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_volume' 2 3 'Structure model' '_citation.title' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 16.1302520322 25.064979078 28.9010176596 0.440449646456 ? 0.0256703030205 ? 0.0393195016426 ? 0.35272657566 ? 0.0276399316656 ? 0.438451585662 ? 7.97438095595 ? 1.87545687317 ? 0.963762023182 ? 6.43556172048 ? 0.468382685765 ? 6.19852040543 ? 0.181949957002 ? -0.556749091043 ? -0.153144042312 ? 0.265735636789 ? -0.204241468862 ? 0.296985482265 ? 0.0267046305833 ? -0.285302907206 ? -0.0100017246987 ? 2 'X-RAY DIFFRACTION' ? refined 17.2184046457 42.7811121802 18.2608430092 0.552368760938 ? 0.119061028998 ? 0.0647250510448 ? 0.503438588102 ? 0.0996585875978 ? 0.648353607161 ? 4.07665992978 ? 1.49560037601 ? 0.396757832449 ? 5.27497371667 ? 0.0269649691848 ? 2.75647232389 ? 0.132251200353 ? 0.00271340845139 ? 0.815530374357 ? 0.00152809528403 ? 0.104503456902 ? 0.856280398198 ? -0.448633428204 ? -0.595501918958 ? -0.185919165047 ? 3 'X-RAY DIFFRACTION' ? refined 40.1680353277 31.2224545308 33.4165909368 0.588535836714 ? -0.0670892058836 ? -0.117062127227 ? 0.783651576893 ? 0.0296522686852 ? 0.612766491025 ? 1.6161318604 ? -1.54880528896 ? -0.451866401795 ? 3.86367944195 ? -2.23664899785 ? 3.0943804188 ? 0.269075801098 ? -0.156694507867 ? -0.321161835425 ? 0.270650728908 ? -0.235937495063 ? -0.0928420487576 ? -0.404796934353 ? -0.734255135604 ? -0.0504399169232 ? 4 'X-RAY DIFFRACTION' ? refined 41.4799623962 34.2591834426 35.3906567184 0.636766921976 ? -0.00111063534083 ? -0.0950038536802 ? 1.04091093303 ? 0.0253169791827 ? 0.672173072213 ? 1.95429570801 ? -1.20252449824 ? 1.70857826379 ? 5.07981949061 ? 0.572898954005 ? 3.97170582851 ? 0.172281669155 ? -0.520482504575 ? -0.374679157053 ? 0.854601243632 ? 0.344212390642 ? -0.222638219046 ? 0.264217823209 ? 0.926767785134 ? -0.540111809361 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 16 ? A 75 A 90 ? ? ;(chain 'A' and resid 16 through 90) ; 2 'X-RAY DIFFRACTION' 2 C 1 B 450 ? C 89 B 546 ? ? ;(chain 'B' and resid 450 through 546) ; 3 'X-RAY DIFFRACTION' 3 E ? C 1 ? E ? C 16 ? ? ;(chain 'C' and resid 1 through 16) ; 4 'X-RAY DIFFRACTION' 4 F ? D 1 ? F ? D 16 ? ? ;(chain 'D' and resid 1 through 16) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 1.20.1_4487 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _pdbx_entry_details.entry_id 8CYF _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" C DA 5 ? ? P C DA 5 ? ? OP2 C DA 5 ? ? 99.37 105.70 -6.33 0.90 N 2 1 "O5'" C DT 6 ? ? P C DT 6 ? ? OP2 C DT 6 ? ? 99.17 105.70 -6.53 0.90 N 3 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 110.19 108.30 1.89 0.30 N 4 1 "O5'" D DC 10 ? ? P D DC 10 ? ? OP2 D DC 10 ? ? 98.61 105.70 -7.09 0.90 N 5 1 "O5'" D DC 10 ? ? "C5'" D DC 10 ? ? "C4'" D DC 10 ? ? 103.10 109.40 -6.30 0.80 N 6 1 "O5'" D DG 11 ? ? P D DG 11 ? ? OP2 D DG 11 ? ? 97.83 105.70 -7.87 0.90 N 7 1 "O5'" D DT 13 ? ? P D DT 13 ? ? OP1 D DT 13 ? ? 94.56 105.70 -11.14 0.90 N 8 1 "C1'" D DT 13 ? ? "O4'" D DT 13 ? ? "C4'" D DT 13 ? ? 104.04 110.10 -6.06 1.00 N 9 1 "O5'" D DT 15 ? ? P D DT 15 ? ? OP2 D DT 15 ? ? 95.50 105.70 -10.20 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 71 ? ? -40.46 107.89 2 1 LYS A 89 ? ? -37.36 129.53 3 1 ARG B 519 ? ? -153.12 51.95 4 1 GLN B 521 ? ? -86.50 38.66 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A PRO 4 ? A PRO 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A GLN 6 ? A GLN 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A PRO 8 ? A PRO 8 9 1 Y 1 A GLY 9 ? A GLY 9 10 1 Y 1 A PRO 10 ? A PRO 10 11 1 Y 1 A ASN 11 ? A ASN 11 12 1 Y 1 A ALA 12 ? A ALA 12 13 1 Y 1 A ASP 13 ? A ASP 13 14 1 Y 1 A ILE 14 ? A ILE 14 15 1 Y 1 A TRP 15 ? A TRP 15 16 1 Y 1 A THR 91 ? A THR 91 17 1 Y 1 A MET 92 ? A MET 92 18 1 Y 1 A GLY 93 ? A GLY 93 19 1 Y 1 A ARG 94 ? A ARG 94 20 1 Y 1 A THR 95 ? A THR 95 21 1 Y 1 A ARG 96 ? A ARG 96 22 1 Y 1 A GLY 97 ? A GLY 97 23 1 Y 1 A ILE 98 ? A ILE 98 24 1 Y 1 A ARG 99 ? A ARG 99 25 1 Y 1 A ARG 100 ? A ARG 100 26 1 Y 1 A THR 101 ? A THR 101 27 1 Y 1 A ALA 102 ? A ALA 102 28 1 Y 1 B MET 438 ? B MET 1 29 1 Y 1 B ALA 439 ? B ALA 2 30 1 Y 1 B HIS 440 ? B HIS 3 31 1 Y 1 B HIS 441 ? B HIS 4 32 1 Y 1 B HIS 442 ? B HIS 5 33 1 Y 1 B HIS 443 ? B HIS 6 34 1 Y 1 B HIS 444 ? B HIS 7 35 1 Y 1 B HIS 445 ? B HIS 8 36 1 Y 1 B VAL 446 ? B VAL 9 37 1 Y 1 B ALA 447 ? B ALA 10 38 1 Y 1 B VAL 448 ? B VAL 11 39 1 Y 1 B ASP 449 ? B ASP 12 40 1 Y 1 B TYR 526 ? B TYR 89 41 1 Y 1 B LEU 527 ? B LEU 90 42 1 Y 1 B ASP 528 ? B ASP 91 43 1 Y 1 B GLY 529 ? B GLY 92 44 1 Y 1 B SER 530 ? B SER 93 45 1 Y 1 B SER 531 ? B SER 94 46 1 Y 1 B GLY 532 ? B GLY 95 47 1 Y 1 B SER 533 ? B SER 96 48 1 Y 1 B GLU 547 ? B GLU 110 49 1 Y 1 B LYS 548 ? B LYS 111 50 1 Y 1 B ALA 549 ? B ALA 112 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CAC AS AS N N 74 CAC O1 O N N 75 CAC O2 O N N 76 CAC C1 C N N 77 CAC C2 C N N 78 CAC H11 H N N 79 CAC H12 H N N 80 CAC H13 H N N 81 CAC H21 H N N 82 CAC H22 H N N 83 CAC H23 H N N 84 CYS N N N N 85 CYS CA C N R 86 CYS C C N N 87 CYS O O N N 88 CYS CB C N N 89 CYS SG S N N 90 CYS OXT O N N 91 CYS H H N N 92 CYS H2 H N N 93 CYS HA H N N 94 CYS HB2 H N N 95 CYS HB3 H N N 96 CYS HG H N N 97 CYS HXT H N N 98 DA OP3 O N N 99 DA P P N N 100 DA OP1 O N N 101 DA OP2 O N N 102 DA "O5'" O N N 103 DA "C5'" C N N 104 DA "C4'" C N R 105 DA "O4'" O N N 106 DA "C3'" C N S 107 DA "O3'" O N N 108 DA "C2'" C N N 109 DA "C1'" C N R 110 DA N9 N Y N 111 DA C8 C Y N 112 DA N7 N Y N 113 DA C5 C Y N 114 DA C6 C Y N 115 DA N6 N N N 116 DA N1 N Y N 117 DA C2 C Y N 118 DA N3 N Y N 119 DA C4 C Y N 120 DA HOP3 H N N 121 DA HOP2 H N N 122 DA "H5'" H N N 123 DA "H5''" H N N 124 DA "H4'" H N N 125 DA "H3'" H N N 126 DA "HO3'" H N N 127 DA "H2'" H N N 128 DA "H2''" H N N 129 DA "H1'" H N N 130 DA H8 H N N 131 DA H61 H N N 132 DA H62 H N N 133 DA H2 H N N 134 DC OP3 O N N 135 DC P P N N 136 DC OP1 O N N 137 DC OP2 O N N 138 DC "O5'" O N N 139 DC "C5'" C N N 140 DC "C4'" C N R 141 DC "O4'" O N N 142 DC "C3'" C N S 143 DC "O3'" O N N 144 DC "C2'" C N N 145 DC "C1'" C N R 146 DC N1 N N N 147 DC C2 C N N 148 DC O2 O N N 149 DC N3 N N N 150 DC C4 C N N 151 DC N4 N N N 152 DC C5 C N N 153 DC C6 C N N 154 DC HOP3 H N N 155 DC HOP2 H N N 156 DC "H5'" H N N 157 DC "H5''" H N N 158 DC "H4'" H N N 159 DC "H3'" H N N 160 DC "HO3'" H N N 161 DC "H2'" H N N 162 DC "H2''" H N N 163 DC "H1'" H N N 164 DC H41 H N N 165 DC H42 H N N 166 DC H5 H N N 167 DC H6 H N N 168 DG OP3 O N N 169 DG P P N N 170 DG OP1 O N N 171 DG OP2 O N N 172 DG "O5'" O N N 173 DG "C5'" C N N 174 DG "C4'" C N R 175 DG "O4'" O N N 176 DG "C3'" C N S 177 DG "O3'" O N N 178 DG "C2'" C N N 179 DG "C1'" C N R 180 DG N9 N Y N 181 DG C8 C Y N 182 DG N7 N Y N 183 DG C5 C Y N 184 DG C6 C N N 185 DG O6 O N N 186 DG N1 N N N 187 DG C2 C N N 188 DG N2 N N N 189 DG N3 N N N 190 DG C4 C Y N 191 DG HOP3 H N N 192 DG HOP2 H N N 193 DG "H5'" H N N 194 DG "H5''" H N N 195 DG "H4'" H N N 196 DG "H3'" H N N 197 DG "HO3'" H N N 198 DG "H2'" H N N 199 DG "H2''" H N N 200 DG "H1'" H N N 201 DG H8 H N N 202 DG H1 H N N 203 DG H21 H N N 204 DG H22 H N N 205 DT OP3 O N N 206 DT P P N N 207 DT OP1 O N N 208 DT OP2 O N N 209 DT "O5'" O N N 210 DT "C5'" C N N 211 DT "C4'" C N R 212 DT "O4'" O N N 213 DT "C3'" C N S 214 DT "O3'" O N N 215 DT "C2'" C N N 216 DT "C1'" C N R 217 DT N1 N N N 218 DT C2 C N N 219 DT O2 O N N 220 DT N3 N N N 221 DT C4 C N N 222 DT O4 O N N 223 DT C5 C N N 224 DT C7 C N N 225 DT C6 C N N 226 DT HOP3 H N N 227 DT HOP2 H N N 228 DT "H5'" H N N 229 DT "H5''" H N N 230 DT "H4'" H N N 231 DT "H3'" H N N 232 DT "HO3'" H N N 233 DT "H2'" H N N 234 DT "H2''" H N N 235 DT "H1'" H N N 236 DT H3 H N N 237 DT H71 H N N 238 DT H72 H N N 239 DT H73 H N N 240 DT H6 H N N 241 GLN N N N N 242 GLN CA C N S 243 GLN C C N N 244 GLN O O N N 245 GLN CB C N N 246 GLN CG C N N 247 GLN CD C N N 248 GLN OE1 O N N 249 GLN NE2 N N N 250 GLN OXT O N N 251 GLN H H N N 252 GLN H2 H N N 253 GLN HA H N N 254 GLN HB2 H N N 255 GLN HB3 H N N 256 GLN HG2 H N N 257 GLN HG3 H N N 258 GLN HE21 H N N 259 GLN HE22 H N N 260 GLN HXT H N N 261 GLU N N N N 262 GLU CA C N S 263 GLU C C N N 264 GLU O O N N 265 GLU CB C N N 266 GLU CG C N N 267 GLU CD C N N 268 GLU OE1 O N N 269 GLU OE2 O N N 270 GLU OXT O N N 271 GLU H H N N 272 GLU H2 H N N 273 GLU HA H N N 274 GLU HB2 H N N 275 GLU HB3 H N N 276 GLU HG2 H N N 277 GLU HG3 H N N 278 GLU HE2 H N N 279 GLU HXT H N N 280 GLY N N N N 281 GLY CA C N N 282 GLY C C N N 283 GLY O O N N 284 GLY OXT O N N 285 GLY H H N N 286 GLY H2 H N N 287 GLY HA2 H N N 288 GLY HA3 H N N 289 GLY HXT H N N 290 HIS N N N N 291 HIS CA C N S 292 HIS C C N N 293 HIS O O N N 294 HIS CB C N N 295 HIS CG C Y N 296 HIS ND1 N Y N 297 HIS CD2 C Y N 298 HIS CE1 C Y N 299 HIS NE2 N Y N 300 HIS OXT O N N 301 HIS H H N N 302 HIS H2 H N N 303 HIS HA H N N 304 HIS HB2 H N N 305 HIS HB3 H N N 306 HIS HD1 H N N 307 HIS HD2 H N N 308 HIS HE1 H N N 309 HIS HE2 H N N 310 HIS HXT H N N 311 HOH O O N N 312 HOH H1 H N N 313 HOH H2 H N N 314 ILE N N N N 315 ILE CA C N S 316 ILE C C N N 317 ILE O O N N 318 ILE CB C N S 319 ILE CG1 C N N 320 ILE CG2 C N N 321 ILE CD1 C N N 322 ILE OXT O N N 323 ILE H H N N 324 ILE H2 H N N 325 ILE HA H N N 326 ILE HB H N N 327 ILE HG12 H N N 328 ILE HG13 H N N 329 ILE HG21 H N N 330 ILE HG22 H N N 331 ILE HG23 H N N 332 ILE HD11 H N N 333 ILE HD12 H N N 334 ILE HD13 H N N 335 ILE HXT H N N 336 LEU N N N N 337 LEU CA C N S 338 LEU C C N N 339 LEU O O N N 340 LEU CB C N N 341 LEU CG C N N 342 LEU CD1 C N N 343 LEU CD2 C N N 344 LEU OXT O N N 345 LEU H H N N 346 LEU H2 H N N 347 LEU HA H N N 348 LEU HB2 H N N 349 LEU HB3 H N N 350 LEU HG H N N 351 LEU HD11 H N N 352 LEU HD12 H N N 353 LEU HD13 H N N 354 LEU HD21 H N N 355 LEU HD22 H N N 356 LEU HD23 H N N 357 LEU HXT H N N 358 LYS N N N N 359 LYS CA C N S 360 LYS C C N N 361 LYS O O N N 362 LYS CB C N N 363 LYS CG C N N 364 LYS CD C N N 365 LYS CE C N N 366 LYS NZ N N N 367 LYS OXT O N N 368 LYS H H N N 369 LYS H2 H N N 370 LYS HA H N N 371 LYS HB2 H N N 372 LYS HB3 H N N 373 LYS HG2 H N N 374 LYS HG3 H N N 375 LYS HD2 H N N 376 LYS HD3 H N N 377 LYS HE2 H N N 378 LYS HE3 H N N 379 LYS HZ1 H N N 380 LYS HZ2 H N N 381 LYS HZ3 H N N 382 LYS HXT H N N 383 MET N N N N 384 MET CA C N S 385 MET C C N N 386 MET O O N N 387 MET CB C N N 388 MET CG C N N 389 MET SD S N N 390 MET CE C N N 391 MET OXT O N N 392 MET H H N N 393 MET H2 H N N 394 MET HA H N N 395 MET HB2 H N N 396 MET HB3 H N N 397 MET HG2 H N N 398 MET HG3 H N N 399 MET HE1 H N N 400 MET HE2 H N N 401 MET HE3 H N N 402 MET HXT H N N 403 PHE N N N N 404 PHE CA C N S 405 PHE C C N N 406 PHE O O N N 407 PHE CB C N N 408 PHE CG C Y N 409 PHE CD1 C Y N 410 PHE CD2 C Y N 411 PHE CE1 C Y N 412 PHE CE2 C Y N 413 PHE CZ C Y N 414 PHE OXT O N N 415 PHE H H N N 416 PHE H2 H N N 417 PHE HA H N N 418 PHE HB2 H N N 419 PHE HB3 H N N 420 PHE HD1 H N N 421 PHE HD2 H N N 422 PHE HE1 H N N 423 PHE HE2 H N N 424 PHE HZ H N N 425 PHE HXT H N N 426 PRO N N N N 427 PRO CA C N S 428 PRO C C N N 429 PRO O O N N 430 PRO CB C N N 431 PRO CG C N N 432 PRO CD C N N 433 PRO OXT O N N 434 PRO H H N N 435 PRO HA H N N 436 PRO HB2 H N N 437 PRO HB3 H N N 438 PRO HG2 H N N 439 PRO HG3 H N N 440 PRO HD2 H N N 441 PRO HD3 H N N 442 PRO HXT H N N 443 SER N N N N 444 SER CA C N S 445 SER C C N N 446 SER O O N N 447 SER CB C N N 448 SER OG O N N 449 SER OXT O N N 450 SER H H N N 451 SER H2 H N N 452 SER HA H N N 453 SER HB2 H N N 454 SER HB3 H N N 455 SER HG H N N 456 SER HXT H N N 457 SF4 FE1 FE N N 458 SF4 FE2 FE N N 459 SF4 FE3 FE N N 460 SF4 FE4 FE N N 461 SF4 S1 S N N 462 SF4 S2 S N N 463 SF4 S3 S N N 464 SF4 S4 S N N 465 THR N N N N 466 THR CA C N S 467 THR C C N N 468 THR O O N N 469 THR CB C N R 470 THR OG1 O N N 471 THR CG2 C N N 472 THR OXT O N N 473 THR H H N N 474 THR H2 H N N 475 THR HA H N N 476 THR HB H N N 477 THR HG1 H N N 478 THR HG21 H N N 479 THR HG22 H N N 480 THR HG23 H N N 481 THR HXT H N N 482 TRP N N N N 483 TRP CA C N S 484 TRP C C N N 485 TRP O O N N 486 TRP CB C N N 487 TRP CG C Y N 488 TRP CD1 C Y N 489 TRP CD2 C Y N 490 TRP NE1 N Y N 491 TRP CE2 C Y N 492 TRP CE3 C Y N 493 TRP CZ2 C Y N 494 TRP CZ3 C Y N 495 TRP CH2 C Y N 496 TRP OXT O N N 497 TRP H H N N 498 TRP H2 H N N 499 TRP HA H N N 500 TRP HB2 H N N 501 TRP HB3 H N N 502 TRP HD1 H N N 503 TRP HE1 H N N 504 TRP HE3 H N N 505 TRP HZ2 H N N 506 TRP HZ3 H N N 507 TRP HH2 H N N 508 TRP HXT H N N 509 TYR N N N N 510 TYR CA C N S 511 TYR C C N N 512 TYR O O N N 513 TYR CB C N N 514 TYR CG C Y N 515 TYR CD1 C Y N 516 TYR CD2 C Y N 517 TYR CE1 C Y N 518 TYR CE2 C Y N 519 TYR CZ C Y N 520 TYR OH O N N 521 TYR OXT O N N 522 TYR H H N N 523 TYR H2 H N N 524 TYR HA H N N 525 TYR HB2 H N N 526 TYR HB3 H N N 527 TYR HD1 H N N 528 TYR HD2 H N N 529 TYR HE1 H N N 530 TYR HE2 H N N 531 TYR HH H N N 532 TYR HXT H N N 533 VAL N N N N 534 VAL CA C N S 535 VAL C C N N 536 VAL O O N N 537 VAL CB C N N 538 VAL CG1 C N N 539 VAL CG2 C N N 540 VAL OXT O N N 541 VAL H H N N 542 VAL H2 H N N 543 VAL HA H N N 544 VAL HB H N N 545 VAL HG11 H N N 546 VAL HG12 H N N 547 VAL HG13 H N N 548 VAL HG21 H N N 549 VAL HG22 H N N 550 VAL HG23 H N N 551 VAL HXT H N N 552 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CAC AS O1 doub N N 70 CAC AS O2 sing N N 71 CAC AS C1 sing N N 72 CAC AS C2 sing N N 73 CAC C1 H11 sing N N 74 CAC C1 H12 sing N N 75 CAC C1 H13 sing N N 76 CAC C2 H21 sing N N 77 CAC C2 H22 sing N N 78 CAC C2 H23 sing N N 79 CYS N CA sing N N 80 CYS N H sing N N 81 CYS N H2 sing N N 82 CYS CA C sing N N 83 CYS CA CB sing N N 84 CYS CA HA sing N N 85 CYS C O doub N N 86 CYS C OXT sing N N 87 CYS CB SG sing N N 88 CYS CB HB2 sing N N 89 CYS CB HB3 sing N N 90 CYS SG HG sing N N 91 CYS OXT HXT sing N N 92 DA OP3 P sing N N 93 DA OP3 HOP3 sing N N 94 DA P OP1 doub N N 95 DA P OP2 sing N N 96 DA P "O5'" sing N N 97 DA OP2 HOP2 sing N N 98 DA "O5'" "C5'" sing N N 99 DA "C5'" "C4'" sing N N 100 DA "C5'" "H5'" sing N N 101 DA "C5'" "H5''" sing N N 102 DA "C4'" "O4'" sing N N 103 DA "C4'" "C3'" sing N N 104 DA "C4'" "H4'" sing N N 105 DA "O4'" "C1'" sing N N 106 DA "C3'" "O3'" sing N N 107 DA "C3'" "C2'" sing N N 108 DA "C3'" "H3'" sing N N 109 DA "O3'" "HO3'" sing N N 110 DA "C2'" "C1'" sing N N 111 DA "C2'" "H2'" sing N N 112 DA "C2'" "H2''" sing N N 113 DA "C1'" N9 sing N N 114 DA "C1'" "H1'" sing N N 115 DA N9 C8 sing Y N 116 DA N9 C4 sing Y N 117 DA C8 N7 doub Y N 118 DA C8 H8 sing N N 119 DA N7 C5 sing Y N 120 DA C5 C6 sing Y N 121 DA C5 C4 doub Y N 122 DA C6 N6 sing N N 123 DA C6 N1 doub Y N 124 DA N6 H61 sing N N 125 DA N6 H62 sing N N 126 DA N1 C2 sing Y N 127 DA C2 N3 doub Y N 128 DA C2 H2 sing N N 129 DA N3 C4 sing Y N 130 DC OP3 P sing N N 131 DC OP3 HOP3 sing N N 132 DC P OP1 doub N N 133 DC P OP2 sing N N 134 DC P "O5'" sing N N 135 DC OP2 HOP2 sing N N 136 DC "O5'" "C5'" sing N N 137 DC "C5'" "C4'" sing N N 138 DC "C5'" "H5'" sing N N 139 DC "C5'" "H5''" sing N N 140 DC "C4'" "O4'" sing N N 141 DC "C4'" "C3'" sing N N 142 DC "C4'" "H4'" sing N N 143 DC "O4'" "C1'" sing N N 144 DC "C3'" "O3'" sing N N 145 DC "C3'" "C2'" sing N N 146 DC "C3'" "H3'" sing N N 147 DC "O3'" "HO3'" sing N N 148 DC "C2'" "C1'" sing N N 149 DC "C2'" "H2'" sing N N 150 DC "C2'" "H2''" sing N N 151 DC "C1'" N1 sing N N 152 DC "C1'" "H1'" sing N N 153 DC N1 C2 sing N N 154 DC N1 C6 sing N N 155 DC C2 O2 doub N N 156 DC C2 N3 sing N N 157 DC N3 C4 doub N N 158 DC C4 N4 sing N N 159 DC C4 C5 sing N N 160 DC N4 H41 sing N N 161 DC N4 H42 sing N N 162 DC C5 C6 doub N N 163 DC C5 H5 sing N N 164 DC C6 H6 sing N N 165 DG OP3 P sing N N 166 DG OP3 HOP3 sing N N 167 DG P OP1 doub N N 168 DG P OP2 sing N N 169 DG P "O5'" sing N N 170 DG OP2 HOP2 sing N N 171 DG "O5'" "C5'" sing N N 172 DG "C5'" "C4'" sing N N 173 DG "C5'" "H5'" sing N N 174 DG "C5'" "H5''" sing N N 175 DG "C4'" "O4'" sing N N 176 DG "C4'" "C3'" sing N N 177 DG "C4'" "H4'" sing N N 178 DG "O4'" "C1'" sing N N 179 DG "C3'" "O3'" sing N N 180 DG "C3'" "C2'" sing N N 181 DG "C3'" "H3'" sing N N 182 DG "O3'" "HO3'" sing N N 183 DG "C2'" "C1'" sing N N 184 DG "C2'" "H2'" sing N N 185 DG "C2'" "H2''" sing N N 186 DG "C1'" N9 sing N N 187 DG "C1'" "H1'" sing N N 188 DG N9 C8 sing Y N 189 DG N9 C4 sing Y N 190 DG C8 N7 doub Y N 191 DG C8 H8 sing N N 192 DG N7 C5 sing Y N 193 DG C5 C6 sing N N 194 DG C5 C4 doub Y N 195 DG C6 O6 doub N N 196 DG C6 N1 sing N N 197 DG N1 C2 sing N N 198 DG N1 H1 sing N N 199 DG C2 N2 sing N N 200 DG C2 N3 doub N N 201 DG N2 H21 sing N N 202 DG N2 H22 sing N N 203 DG N3 C4 sing N N 204 DT OP3 P sing N N 205 DT OP3 HOP3 sing N N 206 DT P OP1 doub N N 207 DT P OP2 sing N N 208 DT P "O5'" sing N N 209 DT OP2 HOP2 sing N N 210 DT "O5'" "C5'" sing N N 211 DT "C5'" "C4'" sing N N 212 DT "C5'" "H5'" sing N N 213 DT "C5'" "H5''" sing N N 214 DT "C4'" "O4'" sing N N 215 DT "C4'" "C3'" sing N N 216 DT "C4'" "H4'" sing N N 217 DT "O4'" "C1'" sing N N 218 DT "C3'" "O3'" sing N N 219 DT "C3'" "C2'" sing N N 220 DT "C3'" "H3'" sing N N 221 DT "O3'" "HO3'" sing N N 222 DT "C2'" "C1'" sing N N 223 DT "C2'" "H2'" sing N N 224 DT "C2'" "H2''" sing N N 225 DT "C1'" N1 sing N N 226 DT "C1'" "H1'" sing N N 227 DT N1 C2 sing N N 228 DT N1 C6 sing N N 229 DT C2 O2 doub N N 230 DT C2 N3 sing N N 231 DT N3 C4 sing N N 232 DT N3 H3 sing N N 233 DT C4 O4 doub N N 234 DT C4 C5 sing N N 235 DT C5 C7 sing N N 236 DT C5 C6 doub N N 237 DT C7 H71 sing N N 238 DT C7 H72 sing N N 239 DT C7 H73 sing N N 240 DT C6 H6 sing N N 241 GLN N CA sing N N 242 GLN N H sing N N 243 GLN N H2 sing N N 244 GLN CA C sing N N 245 GLN CA CB sing N N 246 GLN CA HA sing N N 247 GLN C O doub N N 248 GLN C OXT sing N N 249 GLN CB CG sing N N 250 GLN CB HB2 sing N N 251 GLN CB HB3 sing N N 252 GLN CG CD sing N N 253 GLN CG HG2 sing N N 254 GLN CG HG3 sing N N 255 GLN CD OE1 doub N N 256 GLN CD NE2 sing N N 257 GLN NE2 HE21 sing N N 258 GLN NE2 HE22 sing N N 259 GLN OXT HXT sing N N 260 GLU N CA sing N N 261 GLU N H sing N N 262 GLU N H2 sing N N 263 GLU CA C sing N N 264 GLU CA CB sing N N 265 GLU CA HA sing N N 266 GLU C O doub N N 267 GLU C OXT sing N N 268 GLU CB CG sing N N 269 GLU CB HB2 sing N N 270 GLU CB HB3 sing N N 271 GLU CG CD sing N N 272 GLU CG HG2 sing N N 273 GLU CG HG3 sing N N 274 GLU CD OE1 doub N N 275 GLU CD OE2 sing N N 276 GLU OE2 HE2 sing N N 277 GLU OXT HXT sing N N 278 GLY N CA sing N N 279 GLY N H sing N N 280 GLY N H2 sing N N 281 GLY CA C sing N N 282 GLY CA HA2 sing N N 283 GLY CA HA3 sing N N 284 GLY C O doub N N 285 GLY C OXT sing N N 286 GLY OXT HXT sing N N 287 HIS N CA sing N N 288 HIS N H sing N N 289 HIS N H2 sing N N 290 HIS CA C sing N N 291 HIS CA CB sing N N 292 HIS CA HA sing N N 293 HIS C O doub N N 294 HIS C OXT sing N N 295 HIS CB CG sing N N 296 HIS CB HB2 sing N N 297 HIS CB HB3 sing N N 298 HIS CG ND1 sing Y N 299 HIS CG CD2 doub Y N 300 HIS ND1 CE1 doub Y N 301 HIS ND1 HD1 sing N N 302 HIS CD2 NE2 sing Y N 303 HIS CD2 HD2 sing N N 304 HIS CE1 NE2 sing Y N 305 HIS CE1 HE1 sing N N 306 HIS NE2 HE2 sing N N 307 HIS OXT HXT sing N N 308 HOH O H1 sing N N 309 HOH O H2 sing N N 310 ILE N CA sing N N 311 ILE N H sing N N 312 ILE N H2 sing N N 313 ILE CA C sing N N 314 ILE CA CB sing N N 315 ILE CA HA sing N N 316 ILE C O doub N N 317 ILE C OXT sing N N 318 ILE CB CG1 sing N N 319 ILE CB CG2 sing N N 320 ILE CB HB sing N N 321 ILE CG1 CD1 sing N N 322 ILE CG1 HG12 sing N N 323 ILE CG1 HG13 sing N N 324 ILE CG2 HG21 sing N N 325 ILE CG2 HG22 sing N N 326 ILE CG2 HG23 sing N N 327 ILE CD1 HD11 sing N N 328 ILE CD1 HD12 sing N N 329 ILE CD1 HD13 sing N N 330 ILE OXT HXT sing N N 331 LEU N CA sing N N 332 LEU N H sing N N 333 LEU N H2 sing N N 334 LEU CA C sing N N 335 LEU CA CB sing N N 336 LEU CA HA sing N N 337 LEU C O doub N N 338 LEU C OXT sing N N 339 LEU CB CG sing N N 340 LEU CB HB2 sing N N 341 LEU CB HB3 sing N N 342 LEU CG CD1 sing N N 343 LEU CG CD2 sing N N 344 LEU CG HG sing N N 345 LEU CD1 HD11 sing N N 346 LEU CD1 HD12 sing N N 347 LEU CD1 HD13 sing N N 348 LEU CD2 HD21 sing N N 349 LEU CD2 HD22 sing N N 350 LEU CD2 HD23 sing N N 351 LEU OXT HXT sing N N 352 LYS N CA sing N N 353 LYS N H sing N N 354 LYS N H2 sing N N 355 LYS CA C sing N N 356 LYS CA CB sing N N 357 LYS CA HA sing N N 358 LYS C O doub N N 359 LYS C OXT sing N N 360 LYS CB CG sing N N 361 LYS CB HB2 sing N N 362 LYS CB HB3 sing N N 363 LYS CG CD sing N N 364 LYS CG HG2 sing N N 365 LYS CG HG3 sing N N 366 LYS CD CE sing N N 367 LYS CD HD2 sing N N 368 LYS CD HD3 sing N N 369 LYS CE NZ sing N N 370 LYS CE HE2 sing N N 371 LYS CE HE3 sing N N 372 LYS NZ HZ1 sing N N 373 LYS NZ HZ2 sing N N 374 LYS NZ HZ3 sing N N 375 LYS OXT HXT sing N N 376 MET N CA sing N N 377 MET N H sing N N 378 MET N H2 sing N N 379 MET CA C sing N N 380 MET CA CB sing N N 381 MET CA HA sing N N 382 MET C O doub N N 383 MET C OXT sing N N 384 MET CB CG sing N N 385 MET CB HB2 sing N N 386 MET CB HB3 sing N N 387 MET CG SD sing N N 388 MET CG HG2 sing N N 389 MET CG HG3 sing N N 390 MET SD CE sing N N 391 MET CE HE1 sing N N 392 MET CE HE2 sing N N 393 MET CE HE3 sing N N 394 MET OXT HXT sing N N 395 PHE N CA sing N N 396 PHE N H sing N N 397 PHE N H2 sing N N 398 PHE CA C sing N N 399 PHE CA CB sing N N 400 PHE CA HA sing N N 401 PHE C O doub N N 402 PHE C OXT sing N N 403 PHE CB CG sing N N 404 PHE CB HB2 sing N N 405 PHE CB HB3 sing N N 406 PHE CG CD1 doub Y N 407 PHE CG CD2 sing Y N 408 PHE CD1 CE1 sing Y N 409 PHE CD1 HD1 sing N N 410 PHE CD2 CE2 doub Y N 411 PHE CD2 HD2 sing N N 412 PHE CE1 CZ doub Y N 413 PHE CE1 HE1 sing N N 414 PHE CE2 CZ sing Y N 415 PHE CE2 HE2 sing N N 416 PHE CZ HZ sing N N 417 PHE OXT HXT sing N N 418 PRO N CA sing N N 419 PRO N CD sing N N 420 PRO N H sing N N 421 PRO CA C sing N N 422 PRO CA CB sing N N 423 PRO CA HA sing N N 424 PRO C O doub N N 425 PRO C OXT sing N N 426 PRO CB CG sing N N 427 PRO CB HB2 sing N N 428 PRO CB HB3 sing N N 429 PRO CG CD sing N N 430 PRO CG HG2 sing N N 431 PRO CG HG3 sing N N 432 PRO CD HD2 sing N N 433 PRO CD HD3 sing N N 434 PRO OXT HXT sing N N 435 SER N CA sing N N 436 SER N H sing N N 437 SER N H2 sing N N 438 SER CA C sing N N 439 SER CA CB sing N N 440 SER CA HA sing N N 441 SER C O doub N N 442 SER C OXT sing N N 443 SER CB OG sing N N 444 SER CB HB2 sing N N 445 SER CB HB3 sing N N 446 SER OG HG sing N N 447 SER OXT HXT sing N N 448 SF4 FE1 S2 sing N N 449 SF4 FE1 S3 sing N N 450 SF4 FE1 S4 sing N N 451 SF4 FE2 S1 sing N N 452 SF4 FE2 S3 sing N N 453 SF4 FE2 S4 sing N N 454 SF4 FE3 S1 sing N N 455 SF4 FE3 S2 sing N N 456 SF4 FE3 S4 sing N N 457 SF4 FE4 S1 sing N N 458 SF4 FE4 S2 sing N N 459 SF4 FE4 S3 sing N N 460 THR N CA sing N N 461 THR N H sing N N 462 THR N H2 sing N N 463 THR CA C sing N N 464 THR CA CB sing N N 465 THR CA HA sing N N 466 THR C O doub N N 467 THR C OXT sing N N 468 THR CB OG1 sing N N 469 THR CB CG2 sing N N 470 THR CB HB sing N N 471 THR OG1 HG1 sing N N 472 THR CG2 HG21 sing N N 473 THR CG2 HG22 sing N N 474 THR CG2 HG23 sing N N 475 THR OXT HXT sing N N 476 TRP N CA sing N N 477 TRP N H sing N N 478 TRP N H2 sing N N 479 TRP CA C sing N N 480 TRP CA CB sing N N 481 TRP CA HA sing N N 482 TRP C O doub N N 483 TRP C OXT sing N N 484 TRP CB CG sing N N 485 TRP CB HB2 sing N N 486 TRP CB HB3 sing N N 487 TRP CG CD1 doub Y N 488 TRP CG CD2 sing Y N 489 TRP CD1 NE1 sing Y N 490 TRP CD1 HD1 sing N N 491 TRP CD2 CE2 doub Y N 492 TRP CD2 CE3 sing Y N 493 TRP NE1 CE2 sing Y N 494 TRP NE1 HE1 sing N N 495 TRP CE2 CZ2 sing Y N 496 TRP CE3 CZ3 doub Y N 497 TRP CE3 HE3 sing N N 498 TRP CZ2 CH2 doub Y N 499 TRP CZ2 HZ2 sing N N 500 TRP CZ3 CH2 sing Y N 501 TRP CZ3 HZ3 sing N N 502 TRP CH2 HH2 sing N N 503 TRP OXT HXT sing N N 504 TYR N CA sing N N 505 TYR N H sing N N 506 TYR N H2 sing N N 507 TYR CA C sing N N 508 TYR CA CB sing N N 509 TYR CA HA sing N N 510 TYR C O doub N N 511 TYR C OXT sing N N 512 TYR CB CG sing N N 513 TYR CB HB2 sing N N 514 TYR CB HB3 sing N N 515 TYR CG CD1 doub Y N 516 TYR CG CD2 sing Y N 517 TYR CD1 CE1 sing Y N 518 TYR CD1 HD1 sing N N 519 TYR CD2 CE2 doub Y N 520 TYR CD2 HD2 sing N N 521 TYR CE1 CZ doub Y N 522 TYR CE1 HE1 sing N N 523 TYR CE2 CZ sing Y N 524 TYR CE2 HE2 sing N N 525 TYR CZ OH sing N N 526 TYR OH HH sing N N 527 TYR OXT HXT sing N N 528 VAL N CA sing N N 529 VAL N H sing N N 530 VAL N H2 sing N N 531 VAL CA C sing N N 532 VAL CA CB sing N N 533 VAL CA HA sing N N 534 VAL C O doub N N 535 VAL C OXT sing N N 536 VAL CB CG1 sing N N 537 VAL CB CG2 sing N N 538 VAL CB HB sing N N 539 VAL CG1 HG11 sing N N 540 VAL CG1 HG12 sing N N 541 VAL CG1 HG13 sing N N 542 VAL CG2 HG21 sing N N 543 VAL CG2 HG22 sing N N 544 VAL CG2 HG23 sing N N 545 VAL OXT HXT sing N N 546 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8CYF 'double helix' 8CYF 'a-form double helix' 8CYF 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 2 1_555 D DT 16 1_555 0.163 -0.146 -0.016 -10.146 -6.492 1.183 1 C_DA2:DT16_D C 2 ? D 16 ? 20 1 1 C DA 3 1_555 D DT 15 1_555 0.144 -0.140 0.174 6.488 -7.261 2.693 2 C_DA3:DT15_D C 3 ? D 15 ? 20 1 1 C DA 4 1_555 D DT 14 1_555 0.129 -0.153 -0.239 3.981 -17.021 0.239 3 C_DA4:DT14_D C 4 ? D 14 ? 20 1 1 C DA 5 1_555 D DT 13 1_555 0.022 -0.123 0.279 -1.150 -15.258 1.386 4 C_DA5:DT13_D C 5 ? D 13 ? 20 1 1 C DT 6 1_555 D DA 12 1_555 -0.127 -0.072 -0.136 4.464 -13.846 2.577 5 C_DT6:DA12_D C 6 ? D 12 ? 20 1 1 C DC 7 1_555 D DG 11 1_555 0.119 -0.230 0.148 -5.296 -15.923 -1.457 6 C_DC7:DG11_D C 7 ? D 11 ? 19 1 1 C DG 8 1_555 D DC 10 1_555 -0.222 -0.151 -0.346 -10.608 -2.270 3.266 7 C_DG8:DC10_D C 8 ? D 10 ? 19 1 1 C DG 9 1_555 D DC 9 1_555 -0.184 -0.227 0.018 -1.624 -11.182 -0.084 8 C_DG9:DC9_D C 9 ? D 9 ? 19 1 1 C DT 10 1_555 D DA 8 1_555 -0.490 -0.182 -0.125 -7.042 -15.530 0.760 9 C_DT10:DA8_D C 10 ? D 8 ? 20 1 1 C DT 11 1_555 D DA 7 1_555 -0.129 -0.183 -0.161 -9.000 -5.240 1.036 10 C_DT11:DA7_D C 11 ? D 7 ? 20 1 1 C DG 12 1_555 D DC 6 1_555 -0.038 -0.013 -0.104 -4.548 -4.882 -2.304 11 C_DG12:DC6_D C 12 ? D 6 ? 19 1 1 C DT 13 1_555 D DA 5 1_555 0.234 -0.231 0.365 5.366 -10.526 1.796 12 C_DT13:DA5_D C 13 ? D 5 ? 20 1 1 C DG 14 1_555 D DC 4 1_555 -0.199 -0.143 0.722 10.859 -19.002 4.411 13 C_DG14:DC4_D C 14 ? D 4 ? 19 1 1 C DG 15 1_555 D DC 3 1_555 -0.244 -0.086 0.364 -6.644 -16.151 8.578 14 C_DG15:DC3_D C 15 ? D 3 ? 19 1 1 C DT 16 1_555 D DA 2 1_555 0.096 -0.171 -0.223 4.062 -14.026 6.520 15 C_DT16:DA2_D C 16 ? D 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 2 1_555 D DT 16 1_555 C DA 3 1_555 D DT 15 1_555 -0.331 -0.406 2.934 1.484 -2.231 36.055 -0.372 0.721 2.937 -3.598 -2.393 36.151 1 CC_DA2DA3:DT15DT16_DD C 2 ? D 16 ? C 3 ? D 15 ? 1 C DA 3 1_555 D DT 15 1_555 C DA 4 1_555 D DT 14 1_555 -0.194 -0.109 3.425 2.664 -5.052 37.324 0.514 0.660 3.389 -7.837 -4.132 37.743 2 CC_DA3DA4:DT14DT15_DD C 3 ? D 15 ? C 4 ? D 14 ? 1 C DA 4 1_555 D DT 14 1_555 C DA 5 1_555 D DT 13 1_555 0.141 -0.261 3.301 -4.281 -2.726 39.575 -0.065 -0.706 3.279 -4.006 6.291 39.886 3 CC_DA4DA5:DT13DT14_DD C 4 ? D 14 ? C 5 ? D 13 ? 1 C DA 5 1_555 D DT 13 1_555 C DT 6 1_555 D DA 12 1_555 -0.024 -0.598 3.079 3.657 -3.676 29.473 -0.433 0.767 3.104 -7.155 -7.118 29.916 4 CC_DA5DT6:DA12DT13_DD C 5 ? D 13 ? C 6 ? D 12 ? 1 C DT 6 1_555 D DA 12 1_555 C DC 7 1_555 D DG 11 1_555 -0.187 -0.236 3.449 -0.105 -1.264 43.139 -0.189 0.243 3.454 -1.718 0.142 43.157 5 CC_DT6DC7:DG11DA12_DD C 6 ? D 12 ? C 7 ? D 11 ? 1 C DC 7 1_555 D DG 11 1_555 C DG 8 1_555 D DC 10 1_555 1.068 0.835 3.535 4.601 1.659 36.869 1.066 -0.998 3.669 2.609 -7.236 37.180 6 CC_DC7DG8:DC10DG11_DD C 7 ? D 11 ? C 8 ? D 10 ? 1 C DG 8 1_555 D DC 10 1_555 C DG 9 1_555 D DC 9 1_555 -1.412 1.051 3.024 -7.217 2.786 35.001 1.317 1.278 3.312 4.563 11.822 35.820 7 CC_DG8DG9:DC9DC10_DD C 8 ? D 10 ? C 9 ? D 9 ? 1 C DG 9 1_555 D DC 9 1_555 C DT 10 1_555 D DA 8 1_555 -0.484 -0.694 3.430 -0.822 -0.937 32.675 -1.063 0.710 3.459 -1.665 1.461 32.698 8 CC_DG9DT10:DA8DC9_DD C 9 ? D 9 ? C 10 ? D 8 ? 1 C DT 10 1_555 D DA 8 1_555 C DT 11 1_555 D DA 7 1_555 0.249 0.203 3.327 2.108 -0.314 34.982 0.385 -0.091 3.334 -0.522 -3.503 35.044 9 CC_DT10DT11:DA7DA8_DD C 10 ? D 8 ? C 11 ? D 7 ? 1 C DT 11 1_555 D DA 7 1_555 C DG 12 1_555 D DC 6 1_555 0.708 0.482 3.145 0.924 8.851 36.658 -0.381 -0.979 3.189 13.824 -1.443 37.687 10 CC_DT11DG12:DC6DA7_DD C 11 ? D 7 ? C 12 ? D 6 ? 1 C DG 12 1_555 D DC 6 1_555 C DT 13 1_555 D DA 5 1_555 0.107 -0.407 2.955 -0.819 6.585 28.435 -2.083 -0.371 2.787 13.179 1.639 29.184 11 CC_DG12DT13:DA5DC6_DD C 12 ? D 6 ? C 13 ? D 5 ? 1 C DT 13 1_555 D DA 5 1_555 C DG 14 1_555 D DC 4 1_555 0.532 -0.795 2.850 -0.190 14.723 26.114 -4.015 -1.063 2.107 29.763 0.384 29.916 12 CC_DT13DG14:DC4DA5_DD C 13 ? D 5 ? C 14 ? D 4 ? 1 C DG 14 1_555 D DC 4 1_555 C DG 15 1_555 D DC 3 1_555 -0.315 -1.165 3.492 -3.485 6.445 33.072 -3.081 -0.043 3.230 11.152 6.031 33.852 13 CC_DG14DG15:DC3DC4_DD C 14 ? D 4 ? C 15 ? D 3 ? 1 C DG 15 1_555 D DC 3 1_555 C DT 16 1_555 D DA 2 1_555 -0.717 -0.676 2.839 0.924 10.681 35.662 -2.251 1.227 2.521 16.973 -1.468 37.188 14 CC_DG15DT16:DA2DC3_DD C 15 ? D 3 ? C 16 ? D 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R35 GM138157-01' 1 'National Science Foundation (NSF, United States)' 'United States' 'CLP 1846908' 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id SF4 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id SF4 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'IRON/SULFUR CLUSTER' SF4 6 'CACODYLATE ION' CAC 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8CWR _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #