data_8DJ4 # _entry.id 8DJ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DJ4 pdb_00008dj4 10.2210/pdb8dj4/pdb WWPDB D_1000266560 ? ? BMRB 31032 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB 'Chemical shift data for Ac-hGal(17-30)NH2, a C-terminal Galanin fragment' 31029 unspecified PDB 'NMR solution structure for Ac-hGal(17-30)NH2, a C-terminal Galanin fragment' 8DHZ unspecified BMRB 'Chemical shift data for hGal(2-12)KK, a galanin N-terminal fragment' 30946 unspecified PDB 'NMR solution structure for hGal(2-12)KK, a galanin N-terminal fragment' 7S3O unspecified BMRB 'Chemical shift data for hGal(1-12)KK, a galanin N-terminal fragment' 30947 unspecified PDB 'NMR solution structure for hGal(1-12)KK, a galanin N-terminal fragment' 7S3Q unspecified BMRB 'Chemical shift data for hGal(1-17)KK, a galanin N-terminal fragment' 30948 unspecified PDB 'NMR solution structure for hGal(1-12)KK, a galanin N-terminal fragment' 7S3R unspecified BMRB 'NMR Solution Structure of C-terminally amidated, Full-length Human Galanin' 31032 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8DJ4 _pdbx_database_status.recvd_initial_deposition_date 2022-06-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wilkinson, R.E.' 1 ? 'Kraichely, K.N.' 2 0000-0002-9674-3583 'Buchanan, L.E.' 3 0000-0001-8486-0371 'Parnham, S.' 4 0000-0002-8205-5827 'Giuliano, M.W.' 5 0000-0003-0137-7769 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_id_ASTM BBRCA9 _citation.journal_id_CSD 0146 _citation.journal_id_ISSN 1090-2104 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 626 _citation.language ? _citation.page_first 121 _citation.page_last 128 _citation.title 'The neuropeptide galanin adopts an irregular secondary structure.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2022.08.032 _citation.pdbx_database_id_PubMed 35994823 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilkinson, R.E.' 1 ? primary 'Kraichely, K.N.' 2 ? primary 'Hendy, C.M.' 3 ? primary 'Buchanan, L.E.' 4 ? primary 'Parnham, S.' 5 ? primary 'Giuliano, M.W.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Galanin _entity.formula_weight 3159.454 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GWTLNSAGYLLGPHAVGNHRSFSDKNGLTS(NH2)' _entity_poly.pdbx_seq_one_letter_code_can GWTLNSAGYLLGPHAVGNHRSFSDKNGLTSX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 TRP n 1 3 THR n 1 4 LEU n 1 5 ASN n 1 6 SER n 1 7 ALA n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 LEU n 1 12 GLY n 1 13 PRO n 1 14 HIS n 1 15 ALA n 1 16 VAL n 1 17 GLY n 1 18 ASN n 1 19 HIS n 1 20 ARG n 1 21 SER n 1 22 PHE n 1 23 SER n 1 24 ASP n 1 25 LYS n 1 26 ASN n 1 27 GLY n 1 28 LEU n 1 29 THR n 1 30 SER n 1 31 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GALA_HUMAN _struct_ref.pdbx_db_accession P22466 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GWTLNSAGYLLGPHAVGNHRSFSDKNGLTS _struct_ref.pdbx_align_begin 33 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8DJ4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 30 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22466 _struct_ref_seq.db_align_beg 33 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 62 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 30 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 8DJ4 _struct_ref_seq_dif.mon_id NH2 _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 31 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P22466 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details amidation _struct_ref_seq_dif.pdbx_auth_seq_num 31 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '1H 1D NMR Spectrum' 1 isotropic 2 1 1 '2D 1H-1H COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic 4 1 1 '2D 1H-1H ROESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 4.6 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'sample was dissolved in 10 mM sodium acetate-d3/acetic acid-d4 buffer at pH 4.6; no additional additives were present.' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.02 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.5 mM hGal(1-30)NH2, 4.14 mM [U-2H] sodium acetate, 5.86 mM [U-2H] acetic acid, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type 'lyophilized powder' _pdbx_nmr_sample_details.details ;peptide was suspended and dissolved into deuterated acetate buffer, which had been prepared in 95:5 H2O:D2O to within 0.02 units of pH 4.6 ; # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details 'TCI H-C/N-D Cryoprobe' # _pdbx_nmr_refine.entry_id 8DJ4 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 8DJ4 _pdbx_nmr_details.text ;The authors state the following regarding the geometric deviations with this ensemble: With most of the hydrogen bonds in the N-terminus of the peptide bifurcated, or even more, they are confident that the ensemble represents the time-averaged structure of a peptide that is rapidly interconverting turns of alpha, 310-, and pi-helix. Their shift assignments were largely unambiguous and can be found in BMRB entry 31032. The "irregular helix restraints" used (and described in the manuscript and its references) were employed to allow the ensemble to sample multiple arrangements during simulated annealing. By definition, this ensemble existing as an average will display a significant degree of geometric irregularity, particularly with regard the backbone and sidechain outliers as compared to statistical norms. Further, the clashscore level is quite high. This appears to be a consequence of the very high density of ROE-derived distance restraints in the N-terminus of the peptide, which were maximally relaxed to account for any uncertainty in their measurement throughout several rounds of validation and re-calculation. Tight sidechain packing and compression seems to be the dictated outcome of our data. Much of their study is concerned with compact hydrophobic packing in this sequence - this full-length peptide is indeed much more rigid across the stretch of residues it shares with fragment peptides described in entries 7S3O, 7S3Q, and 7S3R. Together with the compactness of the region of the sequence, the clashes appear to be a consequence of several averaged, coiling, helical conformers all existing on the NMR timescale. This is discussed at further length in the citation affiliated with this deposition ; # _pdbx_nmr_ensemble.entry_id 8DJ4 _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 25 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8DJ4 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger A. T. et.al.' 2 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 3 'chemical shift assignment' 'MestreLab (Mnova / MestReNova / MestReC)' ? MestreLab 4 'peak picking' 'MestreLab (Mnova / MestReNova / MestReC)' ? MestreLab # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DJ4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8DJ4 _struct.title 'NMR Solution Structure of C-terminally amidated, Full-length Human Galanin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DJ4 _struct_keywords.text 'synthetic, neuropeptide' _struct_keywords.pdbx_keywords NEUROPEPTIDE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 30 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 31 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 31 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.332 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8DJ4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 NH2 31 31 31 NH2 NH2 A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email giulianomw@cofc.edu _pdbx_contact_author.name_first Michael _pdbx_contact_author.name_last Giuliano _pdbx_contact_author.name_mi W _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0137-7769 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-24 2 'Structure model' 1 1 2022-09-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' # _pdbx_entry_details.entry_id 8DJ4 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'hGal(1-30)NH2' 0.5 ? mM 'natural abundance' 1 'sodium acetate' 4.14 ? mM '[U-2H]' 1 'acetic acid' 5.86 ? mM '[U-2H]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A THR 3 ? ? H A GLY 8 ? ? 1.56 2 2 O A THR 3 ? ? H A GLY 8 ? ? 1.57 3 3 O A THR 3 ? ? H A GLY 8 ? ? 1.57 4 4 O A THR 3 ? ? H A GLY 8 ? ? 1.57 5 5 O A THR 3 ? ? H A GLY 8 ? ? 1.59 6 6 O A THR 3 ? ? H A GLY 8 ? ? 1.57 7 7 O A THR 3 ? ? H A GLY 8 ? ? 1.57 8 8 O A THR 3 ? ? H A GLY 8 ? ? 1.57 9 9 O A THR 3 ? ? H A GLY 8 ? ? 1.56 10 10 O A THR 3 ? ? H A GLY 8 ? ? 1.58 11 11 O A THR 3 ? ? H A GLY 8 ? ? 1.57 12 12 O A THR 3 ? ? H A GLY 8 ? ? 1.52 13 13 O A THR 3 ? ? H A GLY 8 ? ? 1.59 14 14 O A THR 3 ? ? H A GLY 8 ? ? 1.57 15 15 O A THR 3 ? ? H A GLY 8 ? ? 1.59 16 16 O A THR 3 ? ? H A GLY 8 ? ? 1.58 17 17 O A THR 3 ? ? H A GLY 8 ? ? 1.57 18 18 HG A SER 6 ? ? H A ALA 7 ? ? 1.33 19 18 O A THR 3 ? ? H A GLY 8 ? ? 1.58 20 19 O A THR 3 ? ? H A GLY 8 ? ? 1.56 21 20 O A THR 3 ? ? H A GLY 8 ? ? 1.57 22 21 O A THR 3 ? ? H A GLY 8 ? ? 1.54 23 22 O A THR 3 ? ? H A GLY 8 ? ? 1.56 24 23 O A THR 3 ? ? H A GLY 8 ? ? 1.52 25 24 O A THR 3 ? ? H A GLY 8 ? ? 1.56 26 25 O A THR 3 ? ? H A GLY 8 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 3 ? ? -158.58 -37.05 2 1 LEU A 4 ? ? -14.67 -57.95 3 1 SER A 6 ? ? -56.41 -77.93 4 1 ASP A 24 ? ? -140.19 -15.94 5 2 THR A 3 ? ? -158.84 -37.77 6 2 LEU A 4 ? ? -14.59 -58.04 7 2 SER A 6 ? ? -59.10 -76.09 8 2 SER A 21 ? ? -131.87 -33.32 9 2 ASP A 24 ? ? -141.05 -21.47 10 3 THR A 3 ? ? -158.73 -37.57 11 3 LEU A 4 ? ? -14.89 -57.35 12 3 SER A 6 ? ? -56.13 -77.51 13 3 ASP A 24 ? ? -144.28 -27.58 14 3 THR A 29 ? ? 52.34 107.54 15 4 THR A 3 ? ? -159.14 -37.36 16 4 LEU A 4 ? ? -14.76 -58.15 17 4 SER A 6 ? ? -59.31 -76.32 18 4 PHE A 22 ? ? -95.92 -68.19 19 5 THR A 3 ? ? -159.45 -37.70 20 5 LEU A 4 ? ? -14.99 -57.69 21 5 SER A 6 ? ? -59.30 -76.52 22 5 ASN A 18 ? ? -138.50 -41.80 23 5 PHE A 22 ? ? -100.11 -68.44 24 6 THR A 3 ? ? -159.17 -37.33 25 6 LEU A 4 ? ? -14.82 -58.19 26 6 SER A 6 ? ? -59.26 -76.39 27 6 PHE A 22 ? ? -92.05 -71.76 28 6 THR A 29 ? ? -138.01 -46.05 29 7 THR A 3 ? ? -158.81 -36.92 30 7 LEU A 4 ? ? -14.80 -57.93 31 7 SER A 6 ? ? -57.45 -77.61 32 7 PHE A 22 ? ? -99.71 -68.36 33 8 THR A 3 ? ? -158.76 -37.54 34 8 LEU A 4 ? ? -15.05 -57.25 35 8 SER A 6 ? ? -56.09 -77.64 36 8 ASP A 24 ? ? -142.26 -26.18 37 8 LYS A 25 ? ? -134.05 -43.00 38 8 THR A 29 ? ? 52.37 107.62 39 9 THR A 3 ? ? -158.39 -36.99 40 9 LEU A 4 ? ? -14.84 -57.81 41 9 SER A 6 ? ? -56.52 -77.73 42 9 HIS A 14 ? ? 62.84 125.76 43 9 ASP A 24 ? ? -139.89 -37.41 44 9 THR A 29 ? ? -137.89 -46.00 45 10 THR A 3 ? ? -159.12 -37.40 46 10 LEU A 4 ? ? -14.72 -58.16 47 10 SER A 6 ? ? -59.27 -76.51 48 10 ASP A 24 ? ? -142.26 -25.88 49 11 THR A 3 ? ? -158.66 -37.45 50 11 LEU A 4 ? ? -14.94 -57.28 51 11 SER A 6 ? ? -56.40 -77.52 52 11 ASP A 24 ? ? -140.79 -16.59 53 12 THR A 3 ? ? -156.59 -34.46 54 12 LEU A 4 ? ? -15.97 -56.56 55 12 SER A 6 ? ? -52.80 -79.53 56 12 LEU A 10 ? ? -140.01 -27.54 57 12 HIS A 19 ? ? -130.63 -42.93 58 12 PHE A 22 ? ? -95.97 -68.26 59 13 THR A 3 ? ? -159.86 -37.83 60 13 LEU A 4 ? ? -14.97 -57.81 61 13 SER A 6 ? ? -59.02 -76.32 62 13 ASP A 24 ? ? -141.62 -25.45 63 14 THR A 3 ? ? -158.49 -37.45 64 14 LEU A 4 ? ? -14.93 -57.29 65 14 SER A 6 ? ? -56.55 -77.51 66 14 ASP A 24 ? ? 56.96 73.57 67 15 THR A 3 ? ? -159.34 -37.76 68 15 LEU A 4 ? ? -14.98 -57.72 69 15 SER A 6 ? ? -59.43 -76.19 70 15 HIS A 14 ? ? -133.87 -48.03 71 15 ASP A 24 ? ? -144.18 -27.25 72 16 THR A 3 ? ? -159.26 -37.89 73 16 LEU A 4 ? ? -14.94 -57.69 74 16 SER A 6 ? ? -59.08 -76.37 75 16 ASP A 24 ? ? -143.65 -27.16 76 17 THR A 3 ? ? -158.60 -37.39 77 17 LEU A 4 ? ? -14.89 -57.41 78 17 SER A 6 ? ? -56.45 -77.43 79 17 SER A 21 ? ? 56.35 164.76 80 17 ASP A 24 ? ? -142.74 -27.14 81 18 THR A 3 ? ? -159.27 -37.72 82 18 LEU A 4 ? ? -14.83 -57.92 83 18 SER A 6 ? ? -59.31 -76.25 84 18 HIS A 19 ? ? -140.79 -46.10 85 18 ASP A 24 ? ? -140.75 -25.05 86 19 THR A 3 ? ? -158.79 -36.90 87 19 LEU A 4 ? ? -14.88 -57.93 88 19 SER A 6 ? ? -57.90 -77.47 89 19 ASP A 24 ? ? -143.01 -40.76 90 20 THR A 3 ? ? -158.73 -36.84 91 20 LEU A 4 ? ? -14.75 -58.02 92 20 SER A 6 ? ? -58.30 -77.31 93 20 PHE A 22 ? ? -106.09 -70.21 94 21 THR A 3 ? ? -156.19 -34.74 95 21 LEU A 4 ? ? -15.73 -56.94 96 21 SER A 6 ? ? -54.44 -78.39 97 21 SER A 23 ? ? -97.00 55.70 98 21 LYS A 25 ? ? 62.29 124.24 99 21 THR A 29 ? ? -137.12 -46.05 100 22 THR A 3 ? ? -158.53 -36.97 101 22 LEU A 4 ? ? -14.64 -57.99 102 22 SER A 6 ? ? -56.38 -77.93 103 22 ALA A 15 ? ? -131.95 -39.78 104 22 PHE A 22 ? ? -94.13 -71.81 105 22 LYS A 25 ? ? -133.22 -42.61 106 23 THR A 3 ? ? -156.65 -34.43 107 23 LEU A 4 ? ? -16.04 -56.61 108 23 SER A 6 ? ? -52.86 -79.64 109 23 LEU A 10 ? ? -140.18 -27.58 110 23 ASP A 24 ? ? -142.48 -26.11 111 24 THR A 3 ? ? -158.48 -36.99 112 24 LEU A 4 ? ? -14.68 -57.92 113 24 SER A 6 ? ? -57.29 -77.45 114 24 ALA A 15 ? ? -138.93 -42.75 115 24 PHE A 22 ? ? -99.70 -68.71 116 25 THR A 3 ? ? -159.23 -37.40 117 25 LEU A 4 ? ? -14.61 -58.34 118 25 SER A 6 ? ? -59.27 -76.48 119 25 PHE A 22 ? ? -105.22 -69.99 120 25 THR A 29 ? ? -137.75 -46.00 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number P20GM103499-20 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ;Peptide concentration was assessed over a fifty-fold range of concentrations in 1D 1H NMR spectra from 0.1 mM up to 5.0 mM. While all concentrations below and inclusive of 1.0 mM peptide were acceptable - free of dispersion and broadening effects across multiple weeks in solution - 0.5 mM was selected as the optimal choice for further analysis with optimal resolution. ; #