data_8DWA # _entry.id 8DWA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8DWA pdb_00008dwa 10.2210/pdb8dwa/pdb WWPDB D_1000267481 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8DWA _pdbx_database_status.recvd_initial_deposition_date 2022-08-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Reddem, E.R.' 1 0000-0003-3054-5506 'Shapiro, L.' 2 0000-0001-9943-8819 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Emerg Microbes Infect' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2222-1751 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 2146538 _citation.page_last 2146538 _citation.title 'Structural insights into broadly neutralizing antibodies elicited by hybrid immunity against SARS-CoV-2.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1080/22221751.2022.2146538 _citation.pdbx_database_id_PubMed 36354024 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Luo, M.' 1 ? primary 'Zhou, B.' 2 ? primary 'Reddem, E.R.' 3 ? primary 'Tang, B.' 4 ? primary 'Chen, B.' 5 ? primary 'Zhou, R.' 6 ? primary 'Liu, H.' 7 ? primary 'Liu, L.' 8 ? primary 'Katsamba, P.S.' 9 ? primary 'Au, K.K.' 10 ? primary 'Man, H.O.' 11 ? primary 'To, K.K.' 12 ? primary 'Yuen, K.Y.' 13 ? primary 'Shapiro, L.' 14 ? primary 'Dang, S.' 15 ? primary 'Ho, D.D.' 16 ? primary 'Chen, Z.' 17 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8DWA _cell.details ? _cell.formula_units_Z ? _cell.length_a 147.136 _cell.length_a_esd ? _cell.length_b 147.136 _cell.length_b_esd ? _cell.length_c 80.108 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8DWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 20467.893 1 ? ? 'receptor binding domain (UNP residues 335-515)' ? 2 polymer man 'P1D9 Heavy chain' 22660.529 1 ? ? ? ? 3 polymer man 'P1D9 Light chain' 23113.600 1 ? ? ? ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS YGFQPTNGVGYQPYRVVVLSF ; ;LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS YGFQPTNGVGYQPYRVVVLSF ; A ? 2 'polypeptide(L)' no no ;VQLVQSGAEVKKPGSSVRVSCKASGGTFGDDSITWVRQAPGQGLEWMGGIFPLIGKTHYAQRFQGRLTVTADKSTSTAYM ELSGLRSEDTAIYYCARDTGWTLTAFDIWGQGTMVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALT SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK ; ;VQLVQSGAEVKKPGSSVRVSCKASGGTFGDDSITWVRQAPGQGLEWMGGIFPLIGKTHYAQRFQGRLTVTADKSTSTAYM ELSGLRSEDTAIYYCARDTGWTLTAFDIWGQGTMVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALT SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK ; H ? 3 'polypeptide(L)' no no ;DIQMTQSPSSLSASVGDTVTITCRAGQTINTFLNWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTINSLQP EDFATYYCQQSYSNLYTFSQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR ; ;DIQMTQSPSSLSASVGDTVTITCRAGQTINTFLNWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTINSLQP EDFATYYCQQSYSNLYTFSQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 CYS n 1 3 PRO n 1 4 PHE n 1 5 GLY n 1 6 GLU n 1 7 VAL n 1 8 PHE n 1 9 ASN n 1 10 ALA n 1 11 THR n 1 12 ARG n 1 13 PHE n 1 14 ALA n 1 15 SER n 1 16 VAL n 1 17 TYR n 1 18 ALA n 1 19 TRP n 1 20 ASN n 1 21 ARG n 1 22 LYS n 1 23 ARG n 1 24 ILE n 1 25 SER n 1 26 ASN n 1 27 CYS n 1 28 VAL n 1 29 ALA n 1 30 ASP n 1 31 TYR n 1 32 SER n 1 33 VAL n 1 34 LEU n 1 35 TYR n 1 36 ASN n 1 37 SER n 1 38 ALA n 1 39 SER n 1 40 PHE n 1 41 SER n 1 42 THR n 1 43 PHE n 1 44 LYS n 1 45 CYS n 1 46 TYR n 1 47 GLY n 1 48 VAL n 1 49 SER n 1 50 PRO n 1 51 THR n 1 52 LYS n 1 53 LEU n 1 54 ASN n 1 55 ASP n 1 56 LEU n 1 57 CYS n 1 58 PHE n 1 59 THR n 1 60 ASN n 1 61 VAL n 1 62 TYR n 1 63 ALA n 1 64 ASP n 1 65 SER n 1 66 PHE n 1 67 VAL n 1 68 ILE n 1 69 ARG n 1 70 GLY n 1 71 ASP n 1 72 GLU n 1 73 VAL n 1 74 ARG n 1 75 GLN n 1 76 ILE n 1 77 ALA n 1 78 PRO n 1 79 GLY n 1 80 GLN n 1 81 THR n 1 82 GLY n 1 83 LYS n 1 84 ILE n 1 85 ALA n 1 86 ASP n 1 87 TYR n 1 88 ASN n 1 89 TYR n 1 90 LYS n 1 91 LEU n 1 92 PRO n 1 93 ASP n 1 94 ASP n 1 95 PHE n 1 96 THR n 1 97 GLY n 1 98 CYS n 1 99 VAL n 1 100 ILE n 1 101 ALA n 1 102 TRP n 1 103 ASN n 1 104 SER n 1 105 ASN n 1 106 ASN n 1 107 LEU n 1 108 ASP n 1 109 SER n 1 110 LYS n 1 111 VAL n 1 112 GLY n 1 113 GLY n 1 114 ASN n 1 115 TYR n 1 116 ASN n 1 117 TYR n 1 118 LEU n 1 119 TYR n 1 120 ARG n 1 121 LEU n 1 122 PHE n 1 123 ARG n 1 124 LYS n 1 125 SER n 1 126 ASN n 1 127 LEU n 1 128 LYS n 1 129 PRO n 1 130 PHE n 1 131 GLU n 1 132 ARG n 1 133 ASP n 1 134 ILE n 1 135 SER n 1 136 THR n 1 137 GLU n 1 138 ILE n 1 139 TYR n 1 140 GLN n 1 141 ALA n 1 142 GLY n 1 143 SER n 1 144 THR n 1 145 PRO n 1 146 CYS n 1 147 ASN n 1 148 GLY n 1 149 VAL n 1 150 GLU n 1 151 GLY n 1 152 PHE n 1 153 ASN n 1 154 CYS n 1 155 TYR n 1 156 PHE n 1 157 PRO n 1 158 LEU n 1 159 GLN n 1 160 SER n 1 161 TYR n 1 162 GLY n 1 163 PHE n 1 164 GLN n 1 165 PRO n 1 166 THR n 1 167 ASN n 1 168 GLY n 1 169 VAL n 1 170 GLY n 1 171 TYR n 1 172 GLN n 1 173 PRO n 1 174 TYR n 1 175 ARG n 1 176 VAL n 1 177 VAL n 1 178 VAL n 1 179 LEU n 1 180 SER n 1 181 PHE n 2 1 VAL n 2 2 GLN n 2 3 LEU n 2 4 VAL n 2 5 GLN n 2 6 SER n 2 7 GLY n 2 8 ALA n 2 9 GLU n 2 10 VAL n 2 11 LYS n 2 12 LYS n 2 13 PRO n 2 14 GLY n 2 15 SER n 2 16 SER n 2 17 VAL n 2 18 ARG n 2 19 VAL n 2 20 SER n 2 21 CYS n 2 22 LYS n 2 23 ALA n 2 24 SER n 2 25 GLY n 2 26 GLY n 2 27 THR n 2 28 PHE n 2 29 GLY n 2 30 ASP n 2 31 ASP n 2 32 SER n 2 33 ILE n 2 34 THR n 2 35 TRP n 2 36 VAL n 2 37 ARG n 2 38 GLN n 2 39 ALA n 2 40 PRO n 2 41 GLY n 2 42 GLN n 2 43 GLY n 2 44 LEU n 2 45 GLU n 2 46 TRP n 2 47 MET n 2 48 GLY n 2 49 GLY n 2 50 ILE n 2 51 PHE n 2 52 PRO n 2 53 LEU n 2 54 ILE n 2 55 GLY n 2 56 LYS n 2 57 THR n 2 58 HIS n 2 59 TYR n 2 60 ALA n 2 61 GLN n 2 62 ARG n 2 63 PHE n 2 64 GLN n 2 65 GLY n 2 66 ARG n 2 67 LEU n 2 68 THR n 2 69 VAL n 2 70 THR n 2 71 ALA n 2 72 ASP n 2 73 LYS n 2 74 SER n 2 75 THR n 2 76 SER n 2 77 THR n 2 78 ALA n 2 79 TYR n 2 80 MET n 2 81 GLU n 2 82 LEU n 2 83 SER n 2 84 GLY n 2 85 LEU n 2 86 ARG n 2 87 SER n 2 88 GLU n 2 89 ASP n 2 90 THR n 2 91 ALA n 2 92 ILE n 2 93 TYR n 2 94 TYR n 2 95 CYS n 2 96 ALA n 2 97 ARG n 2 98 ASP n 2 99 THR n 2 100 GLY n 2 101 TRP n 2 102 THR n 2 103 LEU n 2 104 THR n 2 105 ALA n 2 106 PHE n 2 107 ASP n 2 108 ILE n 2 109 TRP n 2 110 GLY n 2 111 GLN n 2 112 GLY n 2 113 THR n 2 114 MET n 2 115 VAL n 2 116 THR n 2 117 VAL n 2 118 SER n 2 119 SER n 2 120 ALA n 2 121 SER n 2 122 THR n 2 123 LYS n 2 124 GLY n 2 125 PRO n 2 126 SER n 2 127 VAL n 2 128 PHE n 2 129 PRO n 2 130 LEU n 2 131 ALA n 2 132 PRO n 2 133 SER n 2 134 GLY n 2 135 THR n 2 136 ALA n 2 137 ALA n 2 138 LEU n 2 139 GLY n 2 140 CYS n 2 141 LEU n 2 142 VAL n 2 143 LYS n 2 144 ASP n 2 145 TYR n 2 146 PHE n 2 147 PRO n 2 148 GLU n 2 149 PRO n 2 150 VAL n 2 151 THR n 2 152 VAL n 2 153 SER n 2 154 TRP n 2 155 ASN n 2 156 SER n 2 157 GLY n 2 158 ALA n 2 159 LEU n 2 160 THR n 2 161 SER n 2 162 GLY n 2 163 VAL n 2 164 HIS n 2 165 THR n 2 166 PHE n 2 167 PRO n 2 168 ALA n 2 169 VAL n 2 170 LEU n 2 171 GLN n 2 172 SER n 2 173 SER n 2 174 GLY n 2 175 LEU n 2 176 TYR n 2 177 SER n 2 178 LEU n 2 179 SER n 2 180 SER n 2 181 VAL n 2 182 VAL n 2 183 THR n 2 184 VAL n 2 185 PRO n 2 186 SER n 2 187 SER n 2 188 SER n 2 189 LEU n 2 190 GLY n 2 191 THR n 2 192 GLN n 2 193 THR n 2 194 TYR n 2 195 ILE n 2 196 CYS n 2 197 ASN n 2 198 VAL n 2 199 ASN n 2 200 HIS n 2 201 LYS n 2 202 PRO n 2 203 SER n 2 204 ASN n 2 205 THR n 2 206 LYS n 2 207 VAL n 2 208 ASP n 2 209 LYS n 2 210 LYS n 2 211 VAL n 2 212 GLU n 2 213 PRO n 2 214 LYS n 3 1 ASP n 3 2 ILE n 3 3 GLN n 3 4 MET n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 SER n 3 10 SER n 3 11 LEU n 3 12 SER n 3 13 ALA n 3 14 SER n 3 15 VAL n 3 16 GLY n 3 17 ASP n 3 18 THR n 3 19 VAL n 3 20 THR n 3 21 ILE n 3 22 THR n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 GLY n 3 27 GLN n 3 28 THR n 3 29 ILE n 3 30 ASN n 3 31 THR n 3 32 PHE n 3 33 LEU n 3 34 ASN n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 LYS n 3 40 PRO n 3 41 GLY n 3 42 LYS n 3 43 ALA n 3 44 PRO n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 ALA n 3 51 ALA n 3 52 SER n 3 53 THR n 3 54 LEU n 3 55 GLN n 3 56 SER n 3 57 GLY n 3 58 VAL n 3 59 PRO n 3 60 SER n 3 61 ARG n 3 62 PHE n 3 63 SER n 3 64 GLY n 3 65 SER n 3 66 GLY n 3 67 SER n 3 68 GLY n 3 69 THR n 3 70 ASP n 3 71 PHE n 3 72 THR n 3 73 LEU n 3 74 THR n 3 75 ILE n 3 76 ASN n 3 77 SER n 3 78 LEU n 3 79 GLN n 3 80 PRO n 3 81 GLU n 3 82 ASP n 3 83 PHE n 3 84 ALA n 3 85 THR n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 GLN n 3 90 GLN n 3 91 SER n 3 92 TYR n 3 93 SER n 3 94 ASN n 3 95 LEU n 3 96 TYR n 3 97 THR n 3 98 PHE n 3 99 SER n 3 100 GLN n 3 101 GLY n 3 102 THR n 3 103 LYS n 3 104 VAL n 3 105 GLU n 3 106 ILE n 3 107 LYS n 3 108 ARG n 3 109 THR n 3 110 VAL n 3 111 ALA n 3 112 ALA n 3 113 PRO n 3 114 SER n 3 115 VAL n 3 116 PHE n 3 117 ILE n 3 118 PHE n 3 119 PRO n 3 120 PRO n 3 121 SER n 3 122 ASP n 3 123 GLU n 3 124 GLN n 3 125 LEU n 3 126 LYS n 3 127 SER n 3 128 GLY n 3 129 THR n 3 130 ALA n 3 131 SER n 3 132 VAL n 3 133 VAL n 3 134 CYS n 3 135 LEU n 3 136 LEU n 3 137 ASN n 3 138 ASN n 3 139 PHE n 3 140 TYR n 3 141 PRO n 3 142 ARG n 3 143 GLU n 3 144 ALA n 3 145 LYS n 3 146 VAL n 3 147 GLN n 3 148 TRP n 3 149 LYS n 3 150 VAL n 3 151 ASP n 3 152 ASN n 3 153 ALA n 3 154 LEU n 3 155 GLN n 3 156 SER n 3 157 GLY n 3 158 ASN n 3 159 SER n 3 160 GLN n 3 161 GLU n 3 162 SER n 3 163 VAL n 3 164 THR n 3 165 GLU n 3 166 GLN n 3 167 ASP n 3 168 SER n 3 169 LYS n 3 170 ASP n 3 171 SER n 3 172 THR n 3 173 TYR n 3 174 SER n 3 175 LEU n 3 176 SER n 3 177 SER n 3 178 THR n 3 179 LEU n 3 180 THR n 3 181 LEU n 3 182 SER n 3 183 LYS n 3 184 ALA n 3 185 ASP n 3 186 TYR n 3 187 GLU n 3 188 LYS n 3 189 HIS n 3 190 LYS n 3 191 VAL n 3 192 TYR n 3 193 ALA n 3 194 CYS n 3 195 GLU n 3 196 VAL n 3 197 THR n 3 198 HIS n 3 199 GLN n 3 200 GLY n 3 201 LEU n 3 202 SER n 3 203 SER n 3 204 PRO n 3 205 VAL n 3 206 THR n 3 207 LYS n 3 208 SER n 3 209 PHE n 3 210 ASN n 3 211 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 181 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 214 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 211 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS YGFQPTNGVGYQPYRVVVLSF ; 335 2 PDB 8DWA 8DWA ? 2 ? 1 3 PDB 8DWA 8DWA ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8DWA A 1 ? 181 ? P0DTC2 335 ? 515 ? 335 515 2 2 8DWA H 1 ? 214 ? 8DWA 2 ? 214 ? 2 214 3 3 8DWA L 1 ? 211 ? 8DWA 1 ? 211 ? 1 211 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8DWA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M ammonium sulfate, 0.1 M MES, pH 6.5, 18% w/v PEG5000 MME' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-03-03 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979180 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979180 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8DWA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.120 _reflns.d_resolution_low 144.150 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15333 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.600 _reflns.pdbx_Rmerge_I_obs 0.516 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.527 _reflns.pdbx_Rpim_I_all 0.104 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 392913 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 3.120 3.340 ? ? 72125 ? ? ? 2704 100.000 ? ? ? ? 4.520 ? ? ? ? ? ? ? ? 26.700 ? ? ? 0.900 4.607 0.887 ? 1 1 0.437 ? ? ? ? ? ? ? ? ? ? 8.820 144.150 ? ? 16536 ? ? ? 785 100.000 ? ? ? ? 0.168 ? ? ? ? ? ? ? ? 21.100 ? ? ? 22.100 0.172 0.038 ? 2 1 0.990 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] 1.24 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] 1.24 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -2.48 _refine.B_iso_max ? _refine.B_iso_mean 94.464 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.909 _refine.correlation_coeff_Fo_to_Fc_free 0.875 _refine.details ;U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8DWA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.20 _refine.ls_d_res_low 63.55 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14187 _refine.ls_number_reflns_R_free 747 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.39 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.23788 _refine.ls_R_factor_R_free 0.29747 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.23478 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 7SD5' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.554 _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 62.546 _refine.overall_SU_ML 0.479 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 63.55 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4598 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 4584 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.017 4737 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.019 4311 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.539 1.851 6448 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.187 2.693 9945 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 8.465 5.000 595 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 34.803 22.760 221 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 19.287 15.000 738 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.276 15.000 21 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.236 0.200 714 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 5428 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1133 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 2.621 6.256 2388 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.622 6.257 2387 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.436 9.382 2980 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 4.435 9.382 2981 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.896 6.536 2349 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.896 6.539 2350 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 4.923 9.696 3469 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 10.726 ? 18810 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 10.726 ? 18811 ? r_long_range_B_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.200 _refine_ls_shell.d_res_low 3.283 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_R_work 1024 _refine_ls_shell.percent_reflns_obs 99.63 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.355 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 8DWA _struct.title 'Crystal structure of neutralizing antibody P1D9 Fab in complex with SARS-CoV-2 spike receptor binding domain (RBD)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8DWA _struct_keywords.text ;COVID-19, SARS-CoV-2, Viral protein, Spike glycoprotein, Receptor Binding Protein, RBD, Neutralizing antibody, 10-28, Fab, VIRAL PROTEIN-IMMUNE SYSTEM complex ; _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 4 ? ASN A 9 ? PHE A 338 ASN A 343 1 ? 6 HELX_P HELX_P2 AA2 SER A 15 ? TRP A 19 ? SER A 349 TRP A 353 5 ? 5 HELX_P HELX_P3 AA3 ARG A 69 ? ILE A 76 ? ARG A 403 ILE A 410 5 ? 8 HELX_P HELX_P4 AA4 GLY A 82 ? ASN A 88 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P5 AA5 SER A 104 ? SER A 109 ? SER A 438 SER A 443 1 ? 6 HELX_P HELX_P6 AA6 GLY A 168 ? GLN A 172 ? GLY A 502 GLN A 506 5 ? 5 HELX_P HELX_P7 AA7 GLN B 61 ? GLN B 64 ? GLN H 61 GLN H 64 5 ? 4 HELX_P HELX_P8 AA8 LYS B 201 ? ASN B 204 ? LYS H 201 ASN H 204 5 ? 4 HELX_P HELX_P9 AA9 GLN C 79 ? PHE C 83 ? GLN L 79 PHE L 83 5 ? 5 HELX_P HELX_P10 AB1 SER C 121 ? SER C 127 ? SER L 121 SER L 127 1 ? 7 HELX_P HELX_P11 AB2 LYS C 183 ? GLU C 187 ? LYS L 183 GLU L 187 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 27 SG ? ? A CYS 336 A CYS 361 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf2 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.068 ? ? disulf3 disulf ? ? A CYS 146 SG ? ? ? 1_555 A CYS 154 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf4 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 95 SG ? ? H CYS 22 H CYS 92 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf5 disulf ? ? B CYS 140 SG ? ? ? 1_555 B CYS 196 SG ? ? H CYS 140 H CYS 196 1_555 ? ? ? ? ? ? ? 2.056 ? ? disulf6 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.070 ? ? disulf7 disulf ? ? C CYS 134 SG ? ? ? 1_555 C CYS 194 SG ? ? L CYS 134 L CYS 194 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale one ? A ASN 9 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 343 A NAG 601 1_555 ? ? ? ? ? ? ? 1.453 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 146 B . ? PHE 146 H PRO 147 B ? PRO 147 H 1 -6.72 2 SER 7 C . ? SER 7 L PRO 8 C ? PRO 8 L 1 -6.33 3 TYR 140 C . ? TYR 140 L PRO 141 C ? PRO 141 L 1 1.34 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 6 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 3 ? AA9 ? 4 ? AB1 ? 4 ? AB2 ? 5 ? AB3 ? 2 ? AB4 ? 4 ? AB5 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB2 1 2 ? parallel AB2 2 3 ? anti-parallel AB2 3 4 ? anti-parallel AB2 4 5 ? anti-parallel AB3 1 2 ? anti-parallel AB4 1 2 ? anti-parallel AB4 2 3 ? anti-parallel AB4 3 4 ? anti-parallel AB5 1 2 ? anti-parallel AB5 2 3 ? anti-parallel AB5 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 20 ? ILE A 24 ? ASN A 354 ILE A 358 AA1 2 VAL A 61 ? ILE A 68 ? VAL A 395 ILE A 402 AA1 3 TYR A 174 ? SER A 180 ? TYR A 508 SER A 514 AA1 4 GLY A 97 ? ASN A 103 ? GLY A 431 ASN A 437 AA1 5 THR A 42 ? TYR A 46 ? THR A 376 TYR A 380 AA2 1 LEU A 118 ? ARG A 120 ? LEU A 452 ARG A 454 AA2 2 LEU A 158 ? SER A 160 ? LEU A 492 SER A 494 AA3 1 LEU B 3 ? GLN B 5 ? LEU H 4 GLN H 6 AA3 2 GLY B 14 ? ALA B 23 ? GLY H 15 ALA H 24 AA3 3 THR B 77 ? LEU B 85 C THR H 77 LEU H 82 AA3 4 LEU B 67 ? ASP B 72 ? LEU H 67 ASP H 72 AA4 1 GLU B 9 ? LYS B 11 ? GLU H 10 LYS H 12 AA4 2 MET B 114 ? VAL B 117 ? MET H 108 VAL H 111 AA4 3 ALA B 91 ? ARG B 97 ? ALA H 88 ARG H 94 AA4 4 THR B 34 ? GLN B 38 ? THR H 35 GLN H 39 AA4 5 LEU B 44 ? PHE B 51 ? LEU H 45 PHE H 52 AA4 6 LYS B 56 ? TYR B 59 ? LYS H 56 TYR H 59 AA5 1 GLU B 9 ? LYS B 11 ? GLU H 10 LYS H 12 AA5 2 MET B 114 ? VAL B 117 ? MET H 108 VAL H 111 AA5 3 ALA B 91 ? ARG B 97 ? ALA H 88 ARG H 94 AA5 4 ILE B 108 ? TRP B 109 ? ILE H 102 TRP H 103 AA6 1 SER B 126 ? LEU B 130 ? SER H 120 LEU H 124 AA6 2 THR B 135 ? TYR B 145 ? THR H 135 TYR H 145 AA6 3 TYR B 176 ? PRO B 185 ? TYR H 176 PRO H 185 AA6 4 VAL B 163 ? THR B 165 ? VAL H 163 THR H 165 AA7 1 SER B 126 ? LEU B 130 ? SER H 120 LEU H 124 AA7 2 THR B 135 ? TYR B 145 ? THR H 135 TYR H 145 AA7 3 TYR B 176 ? PRO B 185 ? TYR H 176 PRO H 185 AA7 4 VAL B 169 ? LEU B 170 ? VAL H 169 LEU H 170 AA8 1 THR B 151 ? TRP B 154 ? THR H 151 TRP H 154 AA8 2 TYR B 194 ? HIS B 200 ? TYR H 194 HIS H 200 AA8 3 THR B 205 ? VAL B 211 ? THR H 205 VAL H 211 AA9 1 MET C 4 ? SER C 7 ? MET L 4 SER L 7 AA9 2 VAL C 19 ? ALA C 25 ? VAL L 19 ALA L 25 AA9 3 ASP C 70 ? ILE C 75 ? ASP L 70 ILE L 75 AA9 4 PHE C 62 ? SER C 63 ? PHE L 62 SER L 63 AB1 1 MET C 4 ? SER C 7 ? MET L 4 SER L 7 AB1 2 VAL C 19 ? ALA C 25 ? VAL L 19 ALA L 25 AB1 3 ASP C 70 ? ILE C 75 ? ASP L 70 ILE L 75 AB1 4 GLY C 66 ? SER C 67 ? GLY L 66 SER L 67 AB2 1 SER C 10 ? ALA C 13 ? SER L 10 ALA L 13 AB2 2 THR C 102 ? ILE C 106 ? THR L 102 ILE L 106 AB2 3 THR C 85 ? TYR C 87 ? THR L 85 TYR L 87 AB2 4 TRP C 35 ? GLN C 38 ? TRP L 35 GLN L 38 AB2 5 PRO C 44 ? ILE C 48 ? PRO L 44 ILE L 48 AB3 1 GLN C 89 ? SER C 91 ? GLN L 89 SER L 91 AB3 2 TYR C 96 ? PHE C 98 ? TYR L 96 PHE L 98 AB4 1 SER C 114 ? PHE C 118 ? SER L 114 PHE L 118 AB4 2 THR C 129 ? PHE C 139 ? THR L 129 PHE L 139 AB4 3 TYR C 173 ? SER C 182 ? TYR L 173 SER L 182 AB4 4 SER C 159 ? VAL C 163 ? SER L 159 VAL L 163 AB5 1 ALA C 153 ? GLN C 155 ? ALA L 153 GLN L 155 AB5 2 VAL C 146 ? VAL C 150 ? VAL L 146 VAL L 150 AB5 3 VAL C 191 ? VAL C 196 ? VAL L 191 VAL L 196 AB5 4 VAL C 205 ? ASN C 210 ? VAL L 205 ASN L 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 22 ? N LYS A 356 O ALA A 63 ? O ALA A 397 AA1 2 3 N ILE A 68 ? N ILE A 402 O TYR A 174 ? O TYR A 508 AA1 3 4 O VAL A 177 ? O VAL A 511 N ILE A 100 ? N ILE A 434 AA1 4 5 O VAL A 99 ? O VAL A 433 N LYS A 44 ? N LYS A 378 AA2 1 2 N TYR A 119 ? N TYR A 453 O GLN A 159 ? O GLN A 493 AA3 1 2 N VAL B 4 ? N VAL H 5 O LYS B 22 ? O LYS H 23 AA3 2 3 N GLY B 14 ? N GLY H 15 O LEU B 85 C O LEU H 82 AA3 3 4 O GLU B 81 ? O GLU H 81 N THR B 68 ? N THR H 68 AA4 1 2 N GLU B 9 ? N GLU H 10 O THR B 116 ? O THR H 110 AA4 2 3 O VAL B 115 ? O VAL H 109 N ALA B 91 ? N ALA H 88 AA4 3 4 O ILE B 92 ? O ILE H 89 N GLN B 38 ? N GLN H 39 AA4 4 5 N ARG B 37 ? N ARG H 38 O GLU B 45 ? O GLU H 46 AA4 5 6 N GLY B 49 ? N GLY H 50 O HIS B 58 ? O HIS H 58 AA5 1 2 N GLU B 9 ? N GLU H 10 O THR B 116 ? O THR H 110 AA5 2 3 O VAL B 115 ? O VAL H 109 N ALA B 91 ? N ALA H 88 AA5 3 4 N ARG B 97 ? N ARG H 94 O ILE B 108 ? O ILE H 102 AA6 1 2 N PHE B 128 ? N PHE H 122 O LEU B 141 ? O LEU H 141 AA6 2 3 N TYR B 145 ? N TYR H 145 O TYR B 176 ? O TYR H 176 AA6 3 4 O VAL B 181 ? O VAL H 181 N HIS B 164 ? N HIS H 164 AA7 1 2 N PHE B 128 ? N PHE H 122 O LEU B 141 ? O LEU H 141 AA7 2 3 N TYR B 145 ? N TYR H 145 O TYR B 176 ? O TYR H 176 AA7 3 4 O SER B 177 ? O SER H 177 N VAL B 169 ? N VAL H 169 AA8 1 2 N SER B 153 ? N SER H 153 O ASN B 197 ? O ASN H 197 AA8 2 3 N VAL B 198 ? N VAL H 198 O VAL B 207 ? O VAL H 207 AA9 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24 AA9 2 3 N ILE C 21 ? N ILE L 21 O LEU C 73 ? O LEU L 73 AA9 3 4 O THR C 74 ? O THR L 74 N SER C 63 ? N SER L 63 AB1 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24 AB1 2 3 N ILE C 21 ? N ILE L 21 O LEU C 73 ? O LEU L 73 AB1 3 4 O ASP C 70 ? O ASP L 70 N SER C 67 ? N SER L 67 AB2 1 2 N LEU C 11 ? N LEU L 11 O LYS C 103 ? O LYS L 103 AB2 2 3 O THR C 102 ? O THR L 102 N TYR C 86 ? N TYR L 86 AB2 3 4 O THR C 85 ? O THR L 85 N GLN C 38 ? N GLN L 38 AB2 4 5 N GLN C 37 ? N GLN L 37 O LYS C 45 ? O LYS L 45 AB3 1 2 N GLN C 90 ? N GLN L 90 O THR C 97 ? O THR L 97 AB4 1 2 N PHE C 118 ? N PHE L 118 O VAL C 133 ? O VAL L 133 AB4 2 3 N VAL C 132 ? N VAL L 132 O LEU C 179 ? O LEU L 179 AB4 3 4 O SER C 176 ? O SER L 176 N SER C 162 ? N SER L 162 AB5 1 2 O GLN C 155 ? O GLN L 155 N TRP C 148 ? N TRP L 148 AB5 2 3 N LYS C 149 ? N LYS L 149 O ALA C 193 ? O ALA L 193 AB5 3 4 N VAL C 196 ? N VAL L 196 O VAL C 205 ? O VAL L 205 # _atom_sites.entry_id 8DWA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.006796 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006796 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012483 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'SER A 366 HAS WRONG CHIRALITY AT ATOM CA' 2 'VAL A 367 HAS WRONG CHIRALITY AT ATOM CA' 3 'VAL H 18 HAS WRONG CHIRALITY AT ATOM CA' 4 'THR L 53 HAS WRONG CHIRALITY AT ATOM CA' 5 'Entry contains improper peptide linkages.' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 335 335 LEU LEU A . n A 1 2 CYS 2 336 336 CYS CYS A . n A 1 3 PRO 3 337 337 PRO PRO A . n A 1 4 PHE 4 338 338 PHE PHE A . n A 1 5 GLY 5 339 339 GLY GLY A . n A 1 6 GLU 6 340 340 GLU GLU A . n A 1 7 VAL 7 341 341 VAL VAL A . n A 1 8 PHE 8 342 342 PHE PHE A . n A 1 9 ASN 9 343 343 ASN ASN A . n A 1 10 ALA 10 344 344 ALA ALA A . n A 1 11 THR 11 345 345 THR THR A . n A 1 12 ARG 12 346 346 ARG ARG A . n A 1 13 PHE 13 347 347 PHE PHE A . n A 1 14 ALA 14 348 348 ALA ALA A . n A 1 15 SER 15 349 349 SER SER A . n A 1 16 VAL 16 350 350 VAL VAL A . n A 1 17 TYR 17 351 351 TYR TYR A . n A 1 18 ALA 18 352 352 ALA ALA A . n A 1 19 TRP 19 353 353 TRP TRP A . n A 1 20 ASN 20 354 354 ASN ASN A . n A 1 21 ARG 21 355 355 ARG ARG A . n A 1 22 LYS 22 356 356 LYS LYS A . n A 1 23 ARG 23 357 357 ARG ARG A . n A 1 24 ILE 24 358 358 ILE ILE A . n A 1 25 SER 25 359 359 SER SER A . n A 1 26 ASN 26 360 360 ASN ASN A . n A 1 27 CYS 27 361 361 CYS CYS A . n A 1 28 VAL 28 362 362 VAL VAL A . n A 1 29 ALA 29 363 363 ALA ALA A . n A 1 30 ASP 30 364 364 ASP ASP A . n A 1 31 TYR 31 365 365 TYR TYR A . n A 1 32 SER 32 366 366 SER SER A . n A 1 33 VAL 33 367 367 VAL VAL A . n A 1 34 LEU 34 368 368 LEU LEU A . n A 1 35 TYR 35 369 369 TYR TYR A . n A 1 36 ASN 36 370 370 ASN ASN A . n A 1 37 SER 37 371 371 SER SER A . n A 1 38 ALA 38 372 372 ALA ALA A . n A 1 39 SER 39 373 373 SER SER A . n A 1 40 PHE 40 374 374 PHE PHE A . n A 1 41 SER 41 375 375 SER SER A . n A 1 42 THR 42 376 376 THR THR A . n A 1 43 PHE 43 377 377 PHE PHE A . n A 1 44 LYS 44 378 378 LYS LYS A . n A 1 45 CYS 45 379 379 CYS CYS A . n A 1 46 TYR 46 380 380 TYR TYR A . n A 1 47 GLY 47 381 381 GLY GLY A . n A 1 48 VAL 48 382 ? ? ? A . n A 1 49 SER 49 383 ? ? ? A . n A 1 50 PRO 50 384 ? ? ? A . n A 1 51 THR 51 385 ? ? ? A . n A 1 52 LYS 52 386 ? ? ? A . n A 1 53 LEU 53 387 ? ? ? A . n A 1 54 ASN 54 388 ? ? ? A . n A 1 55 ASP 55 389 ? ? ? A . n A 1 56 LEU 56 390 ? ? ? A . n A 1 57 CYS 57 391 ? ? ? A . n A 1 58 PHE 58 392 392 PHE PHE A . n A 1 59 THR 59 393 393 THR THR A . n A 1 60 ASN 60 394 394 ASN ASN A . n A 1 61 VAL 61 395 395 VAL VAL A . n A 1 62 TYR 62 396 396 TYR TYR A . n A 1 63 ALA 63 397 397 ALA ALA A . n A 1 64 ASP 64 398 398 ASP ASP A . n A 1 65 SER 65 399 399 SER SER A . n A 1 66 PHE 66 400 400 PHE PHE A . n A 1 67 VAL 67 401 401 VAL VAL A . n A 1 68 ILE 68 402 402 ILE ILE A . n A 1 69 ARG 69 403 403 ARG ARG A . n A 1 70 GLY 70 404 404 GLY GLY A . n A 1 71 ASP 71 405 405 ASP ASP A . n A 1 72 GLU 72 406 406 GLU GLU A . n A 1 73 VAL 73 407 407 VAL VAL A . n A 1 74 ARG 74 408 408 ARG ARG A . n A 1 75 GLN 75 409 409 GLN GLN A . n A 1 76 ILE 76 410 410 ILE ILE A . n A 1 77 ALA 77 411 411 ALA ALA A . n A 1 78 PRO 78 412 412 PRO PRO A . n A 1 79 GLY 79 413 413 GLY GLY A . n A 1 80 GLN 80 414 414 GLN GLN A . n A 1 81 THR 81 415 415 THR THR A . n A 1 82 GLY 82 416 416 GLY GLY A . n A 1 83 LYS 83 417 417 LYS LYS A . n A 1 84 ILE 84 418 418 ILE ILE A . n A 1 85 ALA 85 419 419 ALA ALA A . n A 1 86 ASP 86 420 420 ASP ASP A . n A 1 87 TYR 87 421 421 TYR TYR A . n A 1 88 ASN 88 422 422 ASN ASN A . n A 1 89 TYR 89 423 423 TYR TYR A . n A 1 90 LYS 90 424 424 LYS LYS A . n A 1 91 LEU 91 425 425 LEU LEU A . n A 1 92 PRO 92 426 426 PRO PRO A . n A 1 93 ASP 93 427 427 ASP ASP A . n A 1 94 ASP 94 428 428 ASP ASP A . n A 1 95 PHE 95 429 429 PHE PHE A . n A 1 96 THR 96 430 430 THR THR A . n A 1 97 GLY 97 431 431 GLY GLY A . n A 1 98 CYS 98 432 432 CYS CYS A . n A 1 99 VAL 99 433 433 VAL VAL A . n A 1 100 ILE 100 434 434 ILE ILE A . n A 1 101 ALA 101 435 435 ALA ALA A . n A 1 102 TRP 102 436 436 TRP TRP A . n A 1 103 ASN 103 437 437 ASN ASN A . n A 1 104 SER 104 438 438 SER SER A . n A 1 105 ASN 105 439 439 ASN ASN A . n A 1 106 ASN 106 440 440 ASN ASN A . n A 1 107 LEU 107 441 441 LEU LEU A . n A 1 108 ASP 108 442 442 ASP ASP A . n A 1 109 SER 109 443 443 SER SER A . n A 1 110 LYS 110 444 444 LYS LYS A . n A 1 111 VAL 111 445 445 VAL VAL A . n A 1 112 GLY 112 446 446 GLY GLY A . n A 1 113 GLY 113 447 447 GLY GLY A . n A 1 114 ASN 114 448 448 ASN ASN A . n A 1 115 TYR 115 449 449 TYR TYR A . n A 1 116 ASN 116 450 450 ASN ASN A . n A 1 117 TYR 117 451 451 TYR TYR A . n A 1 118 LEU 118 452 452 LEU LEU A . n A 1 119 TYR 119 453 453 TYR TYR A . n A 1 120 ARG 120 454 454 ARG ARG A . n A 1 121 LEU 121 455 455 LEU LEU A . n A 1 122 PHE 122 456 456 PHE PHE A . n A 1 123 ARG 123 457 457 ARG ARG A . n A 1 124 LYS 124 458 458 LYS LYS A . n A 1 125 SER 125 459 459 SER SER A . n A 1 126 ASN 126 460 460 ASN ASN A . n A 1 127 LEU 127 461 461 LEU LEU A . n A 1 128 LYS 128 462 462 LYS LYS A . n A 1 129 PRO 129 463 463 PRO PRO A . n A 1 130 PHE 130 464 464 PHE PHE A . n A 1 131 GLU 131 465 465 GLU GLU A . n A 1 132 ARG 132 466 466 ARG ARG A . n A 1 133 ASP 133 467 467 ASP ASP A . n A 1 134 ILE 134 468 468 ILE ILE A . n A 1 135 SER 135 469 469 SER SER A . n A 1 136 THR 136 470 470 THR THR A . n A 1 137 GLU 137 471 471 GLU GLU A . n A 1 138 ILE 138 472 472 ILE ILE A . n A 1 139 TYR 139 473 473 TYR TYR A . n A 1 140 GLN 140 474 474 GLN GLN A . n A 1 141 ALA 141 475 475 ALA ALA A . n A 1 142 GLY 142 476 476 GLY GLY A . n A 1 143 SER 143 477 477 SER SER A . n A 1 144 THR 144 478 478 THR THR A . n A 1 145 PRO 145 479 479 PRO PRO A . n A 1 146 CYS 146 480 480 CYS CYS A . n A 1 147 ASN 147 481 481 ASN ASN A . n A 1 148 GLY 148 482 482 GLY GLY A . n A 1 149 VAL 149 483 483 VAL VAL A . n A 1 150 GLU 150 484 484 GLU GLU A . n A 1 151 GLY 151 485 485 GLY GLY A . n A 1 152 PHE 152 486 486 PHE PHE A . n A 1 153 ASN 153 487 487 ASN ASN A . n A 1 154 CYS 154 488 488 CYS CYS A . n A 1 155 TYR 155 489 489 TYR TYR A . n A 1 156 PHE 156 490 490 PHE PHE A . n A 1 157 PRO 157 491 491 PRO PRO A . n A 1 158 LEU 158 492 492 LEU LEU A . n A 1 159 GLN 159 493 493 GLN GLN A . n A 1 160 SER 160 494 494 SER SER A . n A 1 161 TYR 161 495 495 TYR TYR A . n A 1 162 GLY 162 496 496 GLY GLY A . n A 1 163 PHE 163 497 497 PHE PHE A . n A 1 164 GLN 164 498 498 GLN GLN A . n A 1 165 PRO 165 499 499 PRO PRO A . n A 1 166 THR 166 500 500 THR THR A . n A 1 167 ASN 167 501 501 ASN ASN A . n A 1 168 GLY 168 502 502 GLY GLY A . n A 1 169 VAL 169 503 503 VAL VAL A . n A 1 170 GLY 170 504 504 GLY GLY A . n A 1 171 TYR 171 505 505 TYR TYR A . n A 1 172 GLN 172 506 506 GLN GLN A . n A 1 173 PRO 173 507 507 PRO PRO A . n A 1 174 TYR 174 508 508 TYR TYR A . n A 1 175 ARG 175 509 509 ARG ARG A . n A 1 176 VAL 176 510 510 VAL VAL A . n A 1 177 VAL 177 511 511 VAL VAL A . n A 1 178 VAL 178 512 512 VAL VAL A . n A 1 179 LEU 179 513 513 LEU LEU A . n A 1 180 SER 180 514 514 SER SER A . n A 1 181 PHE 181 515 515 PHE PHE A . n B 2 1 VAL 1 2 2 VAL VAL H . n B 2 2 GLN 2 3 3 GLN GLN H . n B 2 3 LEU 3 4 4 LEU LEU H . n B 2 4 VAL 4 5 5 VAL VAL H . n B 2 5 GLN 5 6 6 GLN GLN H . n B 2 6 SER 6 7 7 SER SER H . n B 2 7 GLY 7 8 8 GLY GLY H . n B 2 8 ALA 8 9 9 ALA ALA H . n B 2 9 GLU 9 10 10 GLU GLU H . n B 2 10 VAL 10 11 11 VAL VAL H . n B 2 11 LYS 11 12 12 LYS LYS H . n B 2 12 LYS 12 13 13 LYS LYS H . n B 2 13 PRO 13 14 14 PRO PRO H . n B 2 14 GLY 14 15 15 GLY GLY H . n B 2 15 SER 15 16 16 SER SER H . n B 2 16 SER 16 17 17 SER SER H . n B 2 17 VAL 17 18 18 VAL VAL H . n B 2 18 ARG 18 19 19 ARG ARG H . n B 2 19 VAL 19 20 20 VAL VAL H . n B 2 20 SER 20 21 21 SER SER H . n B 2 21 CYS 21 22 22 CYS CYS H . n B 2 22 LYS 22 23 23 LYS LYS H . n B 2 23 ALA 23 24 24 ALA ALA H . n B 2 24 SER 24 25 25 SER SER H . n B 2 25 GLY 25 26 26 GLY GLY H . n B 2 26 GLY 26 27 27 GLY GLY H . n B 2 27 THR 27 28 28 THR THR H . n B 2 28 PHE 28 29 29 PHE PHE H . n B 2 29 GLY 29 30 30 GLY GLY H . n B 2 30 ASP 30 31 31 ASP ASP H . n B 2 31 ASP 31 32 32 ASP ASP H . n B 2 32 SER 32 33 33 SER SER H . n B 2 33 ILE 33 34 34 ILE ILE H . n B 2 34 THR 34 35 35 THR THR H . n B 2 35 TRP 35 36 36 TRP TRP H . n B 2 36 VAL 36 37 37 VAL VAL H . n B 2 37 ARG 37 38 38 ARG ARG H . n B 2 38 GLN 38 39 39 GLN GLN H . n B 2 39 ALA 39 40 40 ALA ALA H . n B 2 40 PRO 40 41 41 PRO PRO H . n B 2 41 GLY 41 42 42 GLY GLY H . n B 2 42 GLN 42 43 43 GLN GLN H . n B 2 43 GLY 43 44 44 GLY GLY H . n B 2 44 LEU 44 45 45 LEU LEU H . n B 2 45 GLU 45 46 46 GLU GLU H . n B 2 46 TRP 46 47 47 TRP TRP H . n B 2 47 MET 47 48 48 MET MET H . n B 2 48 GLY 48 49 49 GLY GLY H . n B 2 49 GLY 49 50 50 GLY GLY H . n B 2 50 ILE 50 51 51 ILE ILE H . n B 2 51 PHE 51 52 52 PHE PHE H . n B 2 52 PRO 52 52 52 PRO PRO H A n B 2 53 LEU 53 53 53 LEU LEU H . n B 2 54 ILE 54 54 54 ILE ILE H . n B 2 55 GLY 55 55 55 GLY GLY H . n B 2 56 LYS 56 56 56 LYS LYS H . n B 2 57 THR 57 57 57 THR THR H . n B 2 58 HIS 58 58 58 HIS HIS H . n B 2 59 TYR 59 59 59 TYR TYR H . n B 2 60 ALA 60 60 60 ALA ALA H . n B 2 61 GLN 61 61 61 GLN GLN H . n B 2 62 ARG 62 62 62 ARG ARG H . n B 2 63 PHE 63 63 63 PHE PHE H . n B 2 64 GLN 64 64 64 GLN GLN H . n B 2 65 GLY 65 65 65 GLY GLY H . n B 2 66 ARG 66 66 66 ARG ARG H . n B 2 67 LEU 67 67 67 LEU LEU H . n B 2 68 THR 68 68 68 THR THR H . n B 2 69 VAL 69 69 69 VAL VAL H . n B 2 70 THR 70 70 70 THR THR H . n B 2 71 ALA 71 71 71 ALA ALA H . n B 2 72 ASP 72 72 72 ASP ASP H . n B 2 73 LYS 73 73 73 LYS LYS H . n B 2 74 SER 74 74 74 SER SER H . n B 2 75 THR 75 75 75 THR THR H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 THR 77 77 77 THR THR H . n B 2 78 ALA 78 78 78 ALA ALA H . n B 2 79 TYR 79 79 79 TYR TYR H . n B 2 80 MET 80 80 80 MET MET H . n B 2 81 GLU 81 81 81 GLU GLU H . n B 2 82 LEU 82 82 82 LEU LEU H . n B 2 83 SER 83 82 82 SER SER H A n B 2 84 GLY 84 82 82 GLY GLY H B n B 2 85 LEU 85 82 82 LEU LEU H C n B 2 86 ARG 86 83 83 ARG ARG H . n B 2 87 SER 87 84 84 SER SER H . n B 2 88 GLU 88 85 85 GLU GLU H . n B 2 89 ASP 89 86 86 ASP ASP H . n B 2 90 THR 90 87 87 THR THR H . n B 2 91 ALA 91 88 88 ALA ALA H . n B 2 92 ILE 92 89 89 ILE ILE H . n B 2 93 TYR 93 90 90 TYR TYR H . n B 2 94 TYR 94 91 91 TYR TYR H . n B 2 95 CYS 95 92 92 CYS CYS H . n B 2 96 ALA 96 93 93 ALA ALA H . n B 2 97 ARG 97 94 94 ARG ARG H . n B 2 98 ASP 98 95 95 ASP ASP H . n B 2 99 THR 99 96 96 THR THR H . n B 2 100 GLY 100 97 97 GLY GLY H . n B 2 101 TRP 101 98 98 TRP TRP H . n B 2 102 THR 102 99 99 THR THR H . n B 2 103 LEU 103 100 100 LEU LEU H . n B 2 104 THR 104 100 100 THR THR H A n B 2 105 ALA 105 100 100 ALA ALA H B n B 2 106 PHE 106 100 100 PHE PHE H C n B 2 107 ASP 107 101 101 ASP ASP H . n B 2 108 ILE 108 102 102 ILE ILE H . n B 2 109 TRP 109 103 103 TRP TRP H . n B 2 110 GLY 110 104 104 GLY GLY H . n B 2 111 GLN 111 105 105 GLN GLN H . n B 2 112 GLY 112 106 106 GLY GLY H . n B 2 113 THR 113 107 107 THR THR H . n B 2 114 MET 114 108 108 MET MET H . n B 2 115 VAL 115 109 109 VAL VAL H . n B 2 116 THR 116 110 110 THR THR H . n B 2 117 VAL 117 111 111 VAL VAL H . n B 2 118 SER 118 112 112 SER SER H . n B 2 119 SER 119 113 113 SER SER H . n B 2 120 ALA 120 114 114 ALA ALA H . n B 2 121 SER 121 115 115 SER SER H . n B 2 122 THR 122 116 116 THR THR H . n B 2 123 LYS 123 117 117 LYS LYS H . n B 2 124 GLY 124 118 118 GLY GLY H . n B 2 125 PRO 125 119 119 PRO PRO H . n B 2 126 SER 126 120 120 SER SER H . n B 2 127 VAL 127 121 121 VAL VAL H . n B 2 128 PHE 128 122 122 PHE PHE H . n B 2 129 PRO 129 123 123 PRO PRO H . n B 2 130 LEU 130 124 124 LEU LEU H . n B 2 131 ALA 131 125 125 ALA ALA H . n B 2 132 PRO 132 126 126 PRO PRO H . n B 2 133 SER 133 127 127 SER SER H . n B 2 134 GLY 134 134 134 GLY GLY H . n B 2 135 THR 135 135 135 THR THR H . n B 2 136 ALA 136 136 136 ALA ALA H . n B 2 137 ALA 137 137 137 ALA ALA H . n B 2 138 LEU 138 138 138 LEU LEU H . n B 2 139 GLY 139 139 139 GLY GLY H . n B 2 140 CYS 140 140 140 CYS CYS H . n B 2 141 LEU 141 141 141 LEU LEU H . n B 2 142 VAL 142 142 142 VAL VAL H . n B 2 143 LYS 143 143 143 LYS LYS H . n B 2 144 ASP 144 144 144 ASP ASP H . n B 2 145 TYR 145 145 145 TYR TYR H . n B 2 146 PHE 146 146 146 PHE PHE H . n B 2 147 PRO 147 147 147 PRO PRO H . n B 2 148 GLU 148 148 148 GLU GLU H . n B 2 149 PRO 149 149 149 PRO PRO H . n B 2 150 VAL 150 150 150 VAL VAL H . n B 2 151 THR 151 151 151 THR THR H . n B 2 152 VAL 152 152 152 VAL VAL H . n B 2 153 SER 153 153 153 SER SER H . n B 2 154 TRP 154 154 154 TRP TRP H . n B 2 155 ASN 155 155 155 ASN ASN H . n B 2 156 SER 156 156 156 SER SER H . n B 2 157 GLY 157 157 157 GLY GLY H . n B 2 158 ALA 158 158 158 ALA ALA H . n B 2 159 LEU 159 159 159 LEU LEU H . n B 2 160 THR 160 160 160 THR THR H . n B 2 161 SER 161 161 161 SER SER H . n B 2 162 GLY 162 162 162 GLY GLY H . n B 2 163 VAL 163 163 163 VAL VAL H . n B 2 164 HIS 164 164 164 HIS HIS H . n B 2 165 THR 165 165 165 THR THR H . n B 2 166 PHE 166 166 166 PHE PHE H . n B 2 167 PRO 167 167 167 PRO PRO H . n B 2 168 ALA 168 168 168 ALA ALA H . n B 2 169 VAL 169 169 169 VAL VAL H . n B 2 170 LEU 170 170 170 LEU LEU H . n B 2 171 GLN 171 171 171 GLN GLN H . n B 2 172 SER 172 172 172 SER SER H . n B 2 173 SER 173 173 173 SER SER H . n B 2 174 GLY 174 174 174 GLY GLY H . n B 2 175 LEU 175 175 175 LEU LEU H . n B 2 176 TYR 176 176 176 TYR TYR H . n B 2 177 SER 177 177 177 SER SER H . n B 2 178 LEU 178 178 178 LEU LEU H . n B 2 179 SER 179 179 179 SER SER H . n B 2 180 SER 180 180 180 SER SER H . n B 2 181 VAL 181 181 181 VAL VAL H . n B 2 182 VAL 182 182 182 VAL VAL H . n B 2 183 THR 183 183 183 THR THR H . n B 2 184 VAL 184 184 184 VAL VAL H . n B 2 185 PRO 185 185 185 PRO PRO H . n B 2 186 SER 186 186 186 SER SER H . n B 2 187 SER 187 187 187 SER SER H . n B 2 188 SER 188 188 188 SER SER H . n B 2 189 LEU 189 189 189 LEU LEU H . n B 2 190 GLY 190 190 190 GLY GLY H . n B 2 191 THR 191 191 191 THR THR H . n B 2 192 GLN 192 192 192 GLN GLN H . n B 2 193 THR 193 193 193 THR THR H . n B 2 194 TYR 194 194 194 TYR TYR H . n B 2 195 ILE 195 195 195 ILE ILE H . n B 2 196 CYS 196 196 196 CYS CYS H . n B 2 197 ASN 197 197 197 ASN ASN H . n B 2 198 VAL 198 198 198 VAL VAL H . n B 2 199 ASN 199 199 199 ASN ASN H . n B 2 200 HIS 200 200 200 HIS HIS H . n B 2 201 LYS 201 201 201 LYS LYS H . n B 2 202 PRO 202 202 202 PRO PRO H . n B 2 203 SER 203 203 203 SER SER H . n B 2 204 ASN 204 204 204 ASN ASN H . n B 2 205 THR 205 205 205 THR THR H . n B 2 206 LYS 206 206 206 LYS LYS H . n B 2 207 VAL 207 207 207 VAL VAL H . n B 2 208 ASP 208 208 208 ASP ASP H . n B 2 209 LYS 209 209 209 LYS LYS H . n B 2 210 LYS 210 210 210 LYS LYS H . n B 2 211 VAL 211 211 211 VAL VAL H . n B 2 212 GLU 212 212 212 GLU GLU H . n B 2 213 PRO 213 213 213 PRO PRO H . n B 2 214 LYS 214 214 214 LYS LYS H . n C 3 1 ASP 1 1 1 ASP ASP L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 GLN 3 3 3 GLN GLN L . n C 3 4 MET 4 4 4 MET MET L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 SER 7 7 7 SER SER L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 SER 9 9 9 SER SER L . n C 3 10 SER 10 10 10 SER SER L . n C 3 11 LEU 11 11 11 LEU LEU L . n C 3 12 SER 12 12 12 SER SER L . n C 3 13 ALA 13 13 13 ALA ALA L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 VAL 15 15 15 VAL VAL L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 ASP 17 17 17 ASP ASP L . n C 3 18 THR 18 18 18 THR THR L . n C 3 19 VAL 19 19 19 VAL VAL L . n C 3 20 THR 20 20 20 THR THR L . n C 3 21 ILE 21 21 21 ILE ILE L . n C 3 22 THR 22 22 22 THR THR L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 ALA 25 25 25 ALA ALA L . n C 3 26 GLY 26 26 26 GLY GLY L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 THR 28 28 28 THR THR L . n C 3 29 ILE 29 29 29 ILE ILE L . n C 3 30 ASN 30 30 30 ASN ASN L . n C 3 31 THR 31 31 31 THR THR L . n C 3 32 PHE 32 32 32 PHE PHE L . n C 3 33 LEU 33 33 33 LEU LEU L . n C 3 34 ASN 34 34 34 ASN ASN L . n C 3 35 TRP 35 35 35 TRP TRP L . n C 3 36 TYR 36 36 36 TYR TYR L . n C 3 37 GLN 37 37 37 GLN GLN L . n C 3 38 GLN 38 38 38 GLN GLN L . n C 3 39 LYS 39 39 39 LYS LYS L . n C 3 40 PRO 40 40 40 PRO PRO L . n C 3 41 GLY 41 41 41 GLY GLY L . n C 3 42 LYS 42 42 42 LYS LYS L . n C 3 43 ALA 43 43 43 ALA ALA L . n C 3 44 PRO 44 44 44 PRO PRO L . n C 3 45 LYS 45 45 45 LYS LYS L . n C 3 46 LEU 46 46 46 LEU LEU L . n C 3 47 LEU 47 47 47 LEU LEU L . n C 3 48 ILE 48 48 48 ILE ILE L . n C 3 49 TYR 49 49 49 TYR TYR L . n C 3 50 ALA 50 50 50 ALA ALA L . n C 3 51 ALA 51 51 51 ALA ALA L . n C 3 52 SER 52 52 52 SER SER L . n C 3 53 THR 53 53 53 THR THR L . n C 3 54 LEU 54 54 54 LEU LEU L . n C 3 55 GLN 55 55 55 GLN GLN L . n C 3 56 SER 56 56 56 SER SER L . n C 3 57 GLY 57 57 57 GLY GLY L . n C 3 58 VAL 58 58 58 VAL VAL L . n C 3 59 PRO 59 59 59 PRO PRO L . n C 3 60 SER 60 60 60 SER SER L . n C 3 61 ARG 61 61 61 ARG ARG L . n C 3 62 PHE 62 62 62 PHE PHE L . n C 3 63 SER 63 63 63 SER SER L . n C 3 64 GLY 64 64 64 GLY GLY L . n C 3 65 SER 65 65 65 SER SER L . n C 3 66 GLY 66 66 66 GLY GLY L . n C 3 67 SER 67 67 67 SER SER L . n C 3 68 GLY 68 68 68 GLY GLY L . n C 3 69 THR 69 69 69 THR THR L . n C 3 70 ASP 70 70 70 ASP ASP L . n C 3 71 PHE 71 71 71 PHE PHE L . n C 3 72 THR 72 72 72 THR THR L . n C 3 73 LEU 73 73 73 LEU LEU L . n C 3 74 THR 74 74 74 THR THR L . n C 3 75 ILE 75 75 75 ILE ILE L . n C 3 76 ASN 76 76 76 ASN ASN L . n C 3 77 SER 77 77 77 SER SER L . n C 3 78 LEU 78 78 78 LEU LEU L . n C 3 79 GLN 79 79 79 GLN GLN L . n C 3 80 PRO 80 80 80 PRO PRO L . n C 3 81 GLU 81 81 81 GLU GLU L . n C 3 82 ASP 82 82 82 ASP ASP L . n C 3 83 PHE 83 83 83 PHE PHE L . n C 3 84 ALA 84 84 84 ALA ALA L . n C 3 85 THR 85 85 85 THR THR L . n C 3 86 TYR 86 86 86 TYR TYR L . n C 3 87 TYR 87 87 87 TYR TYR L . n C 3 88 CYS 88 88 88 CYS CYS L . n C 3 89 GLN 89 89 89 GLN GLN L . n C 3 90 GLN 90 90 90 GLN GLN L . n C 3 91 SER 91 91 91 SER SER L . n C 3 92 TYR 92 92 92 TYR TYR L . n C 3 93 SER 93 93 93 SER SER L . n C 3 94 ASN 94 94 94 ASN ASN L . n C 3 95 LEU 95 95 95 LEU LEU L . n C 3 96 TYR 96 96 96 TYR TYR L . n C 3 97 THR 97 97 97 THR THR L . n C 3 98 PHE 98 98 98 PHE PHE L . n C 3 99 SER 99 99 99 SER SER L . n C 3 100 GLN 100 100 100 GLN GLN L . n C 3 101 GLY 101 101 101 GLY GLY L . n C 3 102 THR 102 102 102 THR THR L . n C 3 103 LYS 103 103 103 LYS LYS L . n C 3 104 VAL 104 104 104 VAL VAL L . n C 3 105 GLU 105 105 105 GLU GLU L . n C 3 106 ILE 106 106 106 ILE ILE L . n C 3 107 LYS 107 107 107 LYS LYS L . n C 3 108 ARG 108 108 108 ARG ARG L . n C 3 109 THR 109 109 109 THR THR L . n C 3 110 VAL 110 110 110 VAL VAL L . n C 3 111 ALA 111 111 111 ALA ALA L . n C 3 112 ALA 112 112 112 ALA ALA L . n C 3 113 PRO 113 113 113 PRO PRO L . n C 3 114 SER 114 114 114 SER SER L . n C 3 115 VAL 115 115 115 VAL VAL L . n C 3 116 PHE 116 116 116 PHE PHE L . n C 3 117 ILE 117 117 117 ILE ILE L . n C 3 118 PHE 118 118 118 PHE PHE L . n C 3 119 PRO 119 119 119 PRO PRO L . n C 3 120 PRO 120 120 120 PRO PRO L . n C 3 121 SER 121 121 121 SER SER L . n C 3 122 ASP 122 122 122 ASP ASP L . n C 3 123 GLU 123 123 123 GLU GLU L . n C 3 124 GLN 124 124 124 GLN GLN L . n C 3 125 LEU 125 125 125 LEU LEU L . n C 3 126 LYS 126 126 126 LYS LYS L . n C 3 127 SER 127 127 127 SER SER L . n C 3 128 GLY 128 128 128 GLY GLY L . n C 3 129 THR 129 129 129 THR THR L . n C 3 130 ALA 130 130 130 ALA ALA L . n C 3 131 SER 131 131 131 SER SER L . n C 3 132 VAL 132 132 132 VAL VAL L . n C 3 133 VAL 133 133 133 VAL VAL L . n C 3 134 CYS 134 134 134 CYS CYS L . n C 3 135 LEU 135 135 135 LEU LEU L . n C 3 136 LEU 136 136 136 LEU LEU L . n C 3 137 ASN 137 137 137 ASN ASN L . n C 3 138 ASN 138 138 138 ASN ASN L . n C 3 139 PHE 139 139 139 PHE PHE L . n C 3 140 TYR 140 140 140 TYR TYR L . n C 3 141 PRO 141 141 141 PRO PRO L . n C 3 142 ARG 142 142 142 ARG ARG L . n C 3 143 GLU 143 143 143 GLU GLU L . n C 3 144 ALA 144 144 144 ALA ALA L . n C 3 145 LYS 145 145 145 LYS LYS L . n C 3 146 VAL 146 146 146 VAL VAL L . n C 3 147 GLN 147 147 147 GLN GLN L . n C 3 148 TRP 148 148 148 TRP TRP L . n C 3 149 LYS 149 149 149 LYS LYS L . n C 3 150 VAL 150 150 150 VAL VAL L . n C 3 151 ASP 151 151 151 ASP ASP L . n C 3 152 ASN 152 152 152 ASN ASN L . n C 3 153 ALA 153 153 153 ALA ALA L . n C 3 154 LEU 154 154 154 LEU LEU L . n C 3 155 GLN 155 155 155 GLN GLN L . n C 3 156 SER 156 156 156 SER SER L . n C 3 157 GLY 157 157 157 GLY GLY L . n C 3 158 ASN 158 158 158 ASN ASN L . n C 3 159 SER 159 159 159 SER SER L . n C 3 160 GLN 160 160 160 GLN GLN L . n C 3 161 GLU 161 161 161 GLU GLU L . n C 3 162 SER 162 162 162 SER SER L . n C 3 163 VAL 163 163 163 VAL VAL L . n C 3 164 THR 164 164 164 THR THR L . n C 3 165 GLU 165 165 165 GLU GLU L . n C 3 166 GLN 166 166 166 GLN GLN L . n C 3 167 ASP 167 167 167 ASP ASP L . n C 3 168 SER 168 168 168 SER SER L . n C 3 169 LYS 169 169 169 LYS LYS L . n C 3 170 ASP 170 170 170 ASP ASP L . n C 3 171 SER 171 171 171 SER SER L . n C 3 172 THR 172 172 172 THR THR L . n C 3 173 TYR 173 173 173 TYR TYR L . n C 3 174 SER 174 174 174 SER SER L . n C 3 175 LEU 175 175 175 LEU LEU L . n C 3 176 SER 176 176 176 SER SER L . n C 3 177 SER 177 177 177 SER SER L . n C 3 178 THR 178 178 178 THR THR L . n C 3 179 LEU 179 179 179 LEU LEU L . n C 3 180 THR 180 180 180 THR THR L . n C 3 181 LEU 181 181 181 LEU LEU L . n C 3 182 SER 182 182 182 SER SER L . n C 3 183 LYS 183 183 183 LYS LYS L . n C 3 184 ALA 184 184 184 ALA ALA L . n C 3 185 ASP 185 185 185 ASP ASP L . n C 3 186 TYR 186 186 186 TYR TYR L . n C 3 187 GLU 187 187 187 GLU GLU L . n C 3 188 LYS 188 188 188 LYS LYS L . n C 3 189 HIS 189 189 189 HIS HIS L . n C 3 190 LYS 190 190 190 LYS LYS L . n C 3 191 VAL 191 191 191 VAL VAL L . n C 3 192 TYR 192 192 192 TYR TYR L . n C 3 193 ALA 193 193 193 ALA ALA L . n C 3 194 CYS 194 194 194 CYS CYS L . n C 3 195 GLU 195 195 195 GLU GLU L . n C 3 196 VAL 196 196 196 VAL VAL L . n C 3 197 THR 197 197 197 THR THR L . n C 3 198 HIS 198 198 198 HIS HIS L . n C 3 199 GLN 199 199 199 GLN GLN L . n C 3 200 GLY 200 200 200 GLY GLY L . n C 3 201 LEU 201 201 201 LEU LEU L . n C 3 202 SER 202 202 202 SER SER L . n C 3 203 SER 203 203 203 SER SER L . n C 3 204 PRO 204 204 204 PRO PRO L . n C 3 205 VAL 205 205 205 VAL VAL L . n C 3 206 THR 206 206 206 THR THR L . n C 3 207 LYS 207 207 207 LYS LYS L . n C 3 208 SER 208 208 208 SER SER L . n C 3 209 PHE 209 209 209 PHE PHE L . n C 3 210 ASN 210 210 210 ASN ASN L . n C 3 211 ARG 211 211 211 ARG ARG L . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email lss8@columbia.edu _pdbx_contact_author.name_first Lawrence _pdbx_contact_author.name_last Shapiro _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9943-8819 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 516 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5320 ? 1 MORE -25 ? 1 'SSA (A^2)' 26720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-12-07 2 'Structure model' 1 1 2023-01-18 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation.year' 6 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 25.6790 15.7340 25.3300 0.1035 ? 0.0702 ? 0.0239 ? 0.0793 ? -0.0080 ? 0.1671 ? 3.5811 ? -1.6055 ? 1.1208 ? 5.0015 ? -0.7980 ? 7.0339 ? -0.3654 ? -0.2276 ? 0.0054 ? 0.1956 ? 0.2734 ? 0.1504 ? -0.1207 ? -0.4733 ? 0.0920 ? 2 'X-RAY DIFFRACTION' ? refined 57.9570 -11.0040 37.0230 0.2601 ? -0.0886 ? -0.1270 ? 0.1105 ? -0.0139 ? 0.4950 ? 2.4499 ? -3.1292 ? 0.7142 ? 4.7767 ? -1.4701 ? 0.7218 ? -0.1734 ? -0.1060 ? 0.2933 ? 0.2156 ? 0.0084 ? -0.5439 ? -0.0696 ? 0.0155 ? 0.1650 ? 3 'X-RAY DIFFRACTION' ? refined 48.4790 -26.7120 33.3190 0.1415 ? -0.0708 ? -0.0607 ? 0.0557 ? 0.0222 ? 0.3579 ? 2.0325 ? -2.9530 ? 1.5384 ? 4.5835 ? -2.3609 ? 1.3640 ? -0.0049 ? 0.0121 ? -0.1036 ? -0.1976 ? 0.0841 ? 0.2423 ? 0.0942 ? -0.0116 ? -0.0792 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 335 ? ? ? A 515 ? ? ? 2 'X-RAY DIFFRACTION' 2 ? ? H 2 ? ? ? H 214 ? ? ? 3 'X-RAY DIFFRACTION' 3 ? ? L 1 ? ? ? L 211 ? ? ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 2 ? 'data scaling' ? ? 'Phil Evans' ? 29/03/17 ? ? ? ? http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? Aimless ? ? program 0.5.32 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 5 # _pdbx_entry_details.entry_id 8DWA _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NE2 _pdbx_validate_close_contact.auth_asym_id_1 H _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 58 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 L _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 92 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A SER 366 ? ? CA A SER 366 ? ? C A SER 366 ? ? 127.89 111.00 16.89 2.70 N 2 1 CB H VAL 18 ? ? CA H VAL 18 ? ? C H VAL 18 ? ? 123.44 111.40 12.04 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 337 ? ? -69.57 -80.73 2 1 PHE A 338 ? ? 58.44 -59.56 3 1 ALA A 344 ? ? -31.60 121.22 4 1 ASN A 360 ? ? 53.42 84.53 5 1 CYS A 361 ? ? 161.31 171.11 6 1 TYR A 365 ? ? 78.33 -112.79 7 1 SER A 366 ? ? 42.03 -81.07 8 1 TYR A 369 ? ? 71.29 -65.66 9 1 ALA A 372 ? ? -85.37 -132.19 10 1 ASN A 422 ? ? -136.25 -43.39 11 1 ASP A 428 ? ? -37.02 -35.96 12 1 PHE A 429 ? ? -28.16 113.28 13 1 ASN A 448 ? ? -19.97 107.17 14 1 GLN A 474 ? ? 78.23 82.42 15 1 ASN A 487 ? ? 45.24 -153.90 16 1 ASN A 501 ? ? -36.93 142.76 17 1 PRO H 14 ? ? -44.81 163.13 18 1 SER H 16 ? ? 53.33 -146.53 19 1 SER H 17 ? ? 172.99 136.69 20 1 SER H 25 ? ? -124.09 -73.45 21 1 THR H 28 ? ? 69.70 -107.17 22 1 PHE H 29 ? ? 37.54 -84.16 23 1 GLN H 43 ? ? -164.93 -102.17 24 1 SER H 84 ? ? 58.41 -42.77 25 1 ASP H 95 ? ? -97.35 -119.68 26 1 THR H 96 ? ? -162.26 93.26 27 1 TRP H 98 ? ? -127.53 -85.19 28 1 THR H 99 ? ? -61.11 -144.11 29 1 THR H 100 A ? -117.82 -155.23 30 1 THR H 116 ? ? -48.85 150.24 31 1 ASP H 144 ? ? 52.88 77.30 32 1 PHE H 146 ? ? -177.62 140.58 33 1 ALA H 158 ? ? 54.50 -89.50 34 1 THR H 160 ? ? 58.05 -44.87 35 1 THR H 191 ? ? 94.51 -100.18 36 1 ASN H 204 ? ? 30.53 48.51 37 1 LYS H 209 ? ? -161.80 115.39 38 1 CYS L 23 ? ? -153.38 79.09 39 1 ASN L 30 ? ? -133.52 -104.73 40 1 THR L 31 ? ? -80.09 40.42 41 1 ALA L 50 ? ? 38.51 42.33 42 1 ALA L 51 ? ? 84.26 -63.38 43 1 GLN L 55 ? ? 66.51 -151.43 44 1 SER L 56 ? ? -165.53 110.58 45 1 ALA L 84 ? ? -174.54 -168.88 46 1 TYR L 92 ? ? 87.37 -159.99 47 1 SER L 93 ? ? 62.69 61.78 48 1 ASN L 94 ? ? 54.50 134.85 49 1 LEU L 95 ? ? 84.70 132.24 50 1 PHE L 98 ? ? -118.04 -167.28 51 1 ASN L 138 ? ? 50.09 78.64 52 1 ARG L 142 ? ? -61.74 -93.20 53 1 GLU L 143 ? ? 10.09 76.91 54 1 ASN L 152 ? ? 77.85 -6.61 55 1 SER L 156 ? ? -124.06 -54.24 56 1 SER L 168 ? ? -27.37 -42.94 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 VAL A 367 ? ? LEU A 368 ? ? 143.13 2 1 HIS H 58 ? ? TYR H 59 ? ? -148.87 3 1 SER L 91 ? ? TYR L 92 ? ? 147.60 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? A SER 366 ? 'WRONG HAND' . 2 1 CA ? A VAL 367 ? PLANAR . 3 1 CA ? H VAL 18 ? PLANAR . 4 1 CA ? L THR 53 ? PLANAR . # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 H _pdbx_validate_polymer_linkage.auth_comp_id_1 SER _pdbx_validate_polymer_linkage.auth_seq_id_1 127 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 H _pdbx_validate_polymer_linkage.auth_comp_id_2 GLY _pdbx_validate_polymer_linkage.auth_seq_id_2 134 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 10.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 L ASP 1 ? N ? C ASP 1 N 2 1 Y 1 L ASP 1 ? CG ? C ASP 1 CG 3 1 Y 1 L ASP 1 ? OD1 ? C ASP 1 OD1 4 1 Y 1 L ASP 1 ? OD2 ? C ASP 1 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 382 ? A VAL 48 2 1 Y 1 A SER 383 ? A SER 49 3 1 Y 1 A PRO 384 ? A PRO 50 4 1 Y 1 A THR 385 ? A THR 51 5 1 Y 1 A LYS 386 ? A LYS 52 6 1 Y 1 A LEU 387 ? A LEU 53 7 1 Y 1 A ASN 388 ? A ASN 54 8 1 Y 1 A ASP 389 ? A ASP 55 9 1 Y 1 A LEU 390 ? A LEU 56 10 1 Y 1 A CYS 391 ? A CYS 57 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _pdbx_audit_support.funding_organization 'Jack Ma Foundation' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7SD5 _pdbx_initial_refinement_model.details 'PDB entry 7SD5' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #