data_8EKE # _entry.id 8EKE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8EKE pdb_00008eke 10.2210/pdb8eke/pdb WWPDB D_1000268448 ? ? EMDB EMD-28200 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction' _pdbx_database_related.db_id EMD-28200 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8EKE _pdbx_database_status.recvd_initial_deposition_date 2022-09-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Narwal, M.' 1 0000-0002-9718-5827 'Edwards, T.' 2 0000-0003-2561-6728 'Armache, J.P.' 3 0000-0001-9195-2282 'Murakami, K.S.' 4 0000-0003-2244-0501 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 299 _citation.language ? _citation.page_first 104697 _citation.page_last 104697 _citation.title 'SARS-CoV-2 polyprotein substrate regulates the stepwise M pro cleavage reaction.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2023.104697 _citation.pdbx_database_id_PubMed 37044215 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Narwal, M.' 1 ? primary 'Armache, J.P.' 2 ? primary 'Edwards, T.J.' 3 ? primary 'Murakami, K.S.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8EKE _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8EKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description '3C-like proteinase nsp5' _entity.formula_weight 33793.480 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec 3.4.22.69 _entity.pdbx_mutation C145A _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '3CL-PRO,3CLp,Main protease,Mpro,Non-structural protein 5,nsp5,SARS coronavirus main proteinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSAGSVGFNIDYDCVSFC YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSAGSVGFNIDYDCVSFC YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 PHE n 1 4 ARG n 1 5 LYS n 1 6 MET n 1 7 ALA n 1 8 PHE n 1 9 PRO n 1 10 SER n 1 11 GLY n 1 12 LYS n 1 13 VAL n 1 14 GLU n 1 15 GLY n 1 16 CYS n 1 17 MET n 1 18 VAL n 1 19 GLN n 1 20 VAL n 1 21 THR n 1 22 CYS n 1 23 GLY n 1 24 THR n 1 25 THR n 1 26 THR n 1 27 LEU n 1 28 ASN n 1 29 GLY n 1 30 LEU n 1 31 TRP n 1 32 LEU n 1 33 ASP n 1 34 ASP n 1 35 VAL n 1 36 VAL n 1 37 TYR n 1 38 CYS n 1 39 PRO n 1 40 ARG n 1 41 HIS n 1 42 VAL n 1 43 ILE n 1 44 CYS n 1 45 THR n 1 46 SER n 1 47 GLU n 1 48 ASP n 1 49 MET n 1 50 LEU n 1 51 ASN n 1 52 PRO n 1 53 ASN n 1 54 TYR n 1 55 GLU n 1 56 ASP n 1 57 LEU n 1 58 LEU n 1 59 ILE n 1 60 ARG n 1 61 LYS n 1 62 SER n 1 63 ASN n 1 64 HIS n 1 65 ASN n 1 66 PHE n 1 67 LEU n 1 68 VAL n 1 69 GLN n 1 70 ALA n 1 71 GLY n 1 72 ASN n 1 73 VAL n 1 74 GLN n 1 75 LEU n 1 76 ARG n 1 77 VAL n 1 78 ILE n 1 79 GLY n 1 80 HIS n 1 81 SER n 1 82 MET n 1 83 GLN n 1 84 ASN n 1 85 CYS n 1 86 VAL n 1 87 LEU n 1 88 LYS n 1 89 LEU n 1 90 LYS n 1 91 VAL n 1 92 ASP n 1 93 THR n 1 94 ALA n 1 95 ASN n 1 96 PRO n 1 97 LYS n 1 98 THR n 1 99 PRO n 1 100 LYS n 1 101 TYR n 1 102 LYS n 1 103 PHE n 1 104 VAL n 1 105 ARG n 1 106 ILE n 1 107 GLN n 1 108 PRO n 1 109 GLY n 1 110 GLN n 1 111 THR n 1 112 PHE n 1 113 SER n 1 114 VAL n 1 115 LEU n 1 116 ALA n 1 117 CYS n 1 118 TYR n 1 119 ASN n 1 120 GLY n 1 121 SER n 1 122 PRO n 1 123 SER n 1 124 GLY n 1 125 VAL n 1 126 TYR n 1 127 GLN n 1 128 CYS n 1 129 ALA n 1 130 MET n 1 131 ARG n 1 132 PRO n 1 133 ASN n 1 134 PHE n 1 135 THR n 1 136 ILE n 1 137 LYS n 1 138 GLY n 1 139 SER n 1 140 PHE n 1 141 LEU n 1 142 ASN n 1 143 GLY n 1 144 SER n 1 145 ALA n 1 146 GLY n 1 147 SER n 1 148 VAL n 1 149 GLY n 1 150 PHE n 1 151 ASN n 1 152 ILE n 1 153 ASP n 1 154 TYR n 1 155 ASP n 1 156 CYS n 1 157 VAL n 1 158 SER n 1 159 PHE n 1 160 CYS n 1 161 TYR n 1 162 MET n 1 163 HIS n 1 164 HIS n 1 165 MET n 1 166 GLU n 1 167 LEU n 1 168 PRO n 1 169 THR n 1 170 GLY n 1 171 VAL n 1 172 HIS n 1 173 ALA n 1 174 GLY n 1 175 THR n 1 176 ASP n 1 177 LEU n 1 178 GLU n 1 179 GLY n 1 180 ASN n 1 181 PHE n 1 182 TYR n 1 183 GLY n 1 184 PRO n 1 185 PHE n 1 186 VAL n 1 187 ASP n 1 188 ARG n 1 189 GLN n 1 190 THR n 1 191 ALA n 1 192 GLN n 1 193 ALA n 1 194 ALA n 1 195 GLY n 1 196 THR n 1 197 ASP n 1 198 THR n 1 199 THR n 1 200 ILE n 1 201 THR n 1 202 VAL n 1 203 ASN n 1 204 VAL n 1 205 LEU n 1 206 ALA n 1 207 TRP n 1 208 LEU n 1 209 TYR n 1 210 ALA n 1 211 ALA n 1 212 VAL n 1 213 ILE n 1 214 ASN n 1 215 GLY n 1 216 ASP n 1 217 ARG n 1 218 TRP n 1 219 PHE n 1 220 LEU n 1 221 ASN n 1 222 ARG n 1 223 PHE n 1 224 THR n 1 225 THR n 1 226 THR n 1 227 LEU n 1 228 ASN n 1 229 ASP n 1 230 PHE n 1 231 ASN n 1 232 LEU n 1 233 VAL n 1 234 ALA n 1 235 MET n 1 236 LYS n 1 237 TYR n 1 238 ASN n 1 239 TYR n 1 240 GLU n 1 241 PRO n 1 242 LEU n 1 243 THR n 1 244 GLN n 1 245 ASP n 1 246 HIS n 1 247 VAL n 1 248 ASP n 1 249 ILE n 1 250 LEU n 1 251 GLY n 1 252 PRO n 1 253 LEU n 1 254 SER n 1 255 ALA n 1 256 GLN n 1 257 THR n 1 258 GLY n 1 259 ILE n 1 260 ALA n 1 261 VAL n 1 262 LEU n 1 263 ASP n 1 264 MET n 1 265 CYS n 1 266 ALA n 1 267 SER n 1 268 LEU n 1 269 LYS n 1 270 GLU n 1 271 LEU n 1 272 LEU n 1 273 GLN n 1 274 ASN n 1 275 GLY n 1 276 MET n 1 277 ASN n 1 278 GLY n 1 279 ARG n 1 280 THR n 1 281 ILE n 1 282 LEU n 1 283 GLY n 1 284 SER n 1 285 ALA n 1 286 LEU n 1 287 LEU n 1 288 GLU n 1 289 ASP n 1 290 GLU n 1 291 PHE n 1 292 THR n 1 293 PRO n 1 294 PHE n 1 295 ASP n 1 296 VAL n 1 297 VAL n 1 298 ARG n 1 299 GLN n 1 300 CYS n 1 301 SER n 1 302 GLY n 1 303 VAL n 1 304 THR n 1 305 PHE n 1 306 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 306 _entity_src_gen.gene_src_common_name 'SARS-CoV-2, 2019-nCoV, COVID-19 virus' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ ; _struct_ref.pdbx_align_begin 3264 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8EKE A 1 ? 306 ? P0DTD1 3264 ? 3569 ? 1 306 2 1 8EKE B 1 ? 306 ? P0DTD1 3264 ? 3569 ? 1 306 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8EKE ALA A 145 ? UNP P0DTD1 CYS 3408 'engineered mutation' 145 1 2 8EKE ALA B 145 ? UNP P0DTD1 CYS 3408 'engineered mutation' 145 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8EKE _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 94.74 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8EKE _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0016 ? 4785 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.3933 ? 6509 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0380 ? 740 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0033 ? 848 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 10.5002 ? 1695 ? f_dihedral_angle_d ? ? # _struct.entry_id 8EKE _struct.title 'Cryo-EM structure of SARS CoV-2 Mpro WT protease' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8EKE _struct_keywords.text 'Main protease, Mpro, SARS CoV-2, polyprotein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 13 ? GLY A 15 ? VAL A 13 GLY A 15 5 ? 3 HELX_P HELX_P2 AA2 HIS A 41 ? CYS A 44 ? HIS A 41 CYS A 44 5 ? 4 HELX_P HELX_P3 AA3 SER A 46 ? LEU A 50 ? SER A 46 LEU A 50 5 ? 5 HELX_P HELX_P4 AA4 ASN A 53 ? LYS A 61 ? ASN A 53 LYS A 61 1 ? 9 HELX_P HELX_P5 AA5 ILE A 200 ? GLY A 215 ? ILE A 200 GLY A 215 1 ? 16 HELX_P HELX_P6 AA6 THR A 226 ? TYR A 237 ? THR A 226 TYR A 237 1 ? 12 HELX_P HELX_P7 AA7 GLN A 244 ? ILE A 249 ? GLN A 244 ILE A 249 1 ? 6 HELX_P HELX_P8 AA8 LEU A 250 ? GLY A 258 ? LEU A 250 GLY A 258 1 ? 9 HELX_P HELX_P9 AA9 ALA A 260 ? GLY A 275 ? ALA A 260 GLY A 275 1 ? 16 HELX_P HELX_P10 AB1 THR A 292 ? GLY A 302 ? THR A 292 GLY A 302 1 ? 11 HELX_P HELX_P11 AB2 VAL B 13 ? GLY B 15 ? VAL B 13 GLY B 15 5 ? 3 HELX_P HELX_P12 AB3 HIS B 41 ? ILE B 43 ? HIS B 41 ILE B 43 5 ? 3 HELX_P HELX_P13 AB4 SER B 46 ? LEU B 50 ? SER B 46 LEU B 50 5 ? 5 HELX_P HELX_P14 AB5 ASN B 53 ? LYS B 61 ? ASN B 53 LYS B 61 1 ? 9 HELX_P HELX_P15 AB6 ILE B 200 ? GLY B 215 ? ILE B 200 GLY B 215 1 ? 16 HELX_P HELX_P16 AB7 THR B 226 ? TYR B 237 ? THR B 226 TYR B 237 1 ? 12 HELX_P HELX_P17 AB8 THR B 243 ? ILE B 249 ? THR B 243 ILE B 249 1 ? 7 HELX_P HELX_P18 AB9 LEU B 250 ? GLY B 258 ? LEU B 250 GLY B 258 1 ? 9 HELX_P HELX_P19 AC1 ALA B 260 ? GLY B 275 ? ALA B 260 GLY B 275 1 ? 16 HELX_P HELX_P20 AC2 THR B 292 ? GLY B 302 ? THR B 292 GLY B 302 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 5 ? AA3 ? 3 ? AA4 ? 7 ? AA5 ? 5 ? AA6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 73 ? GLN A 74 ? VAL A 73 GLN A 74 AA1 2 PHE A 66 ? ALA A 70 ? PHE A 66 ALA A 70 AA1 3 MET A 17 ? CYS A 22 ? MET A 17 CYS A 22 AA1 4 THR A 25 ? LEU A 32 ? THR A 25 LEU A 32 AA1 5 VAL A 35 ? PRO A 39 ? VAL A 35 PRO A 39 AA1 6 VAL A 86 ? VAL A 91 ? VAL A 86 VAL A 91 AA1 7 VAL A 77 ? GLN A 83 ? VAL A 77 GLN A 83 AA2 1 TYR A 101 ? PHE A 103 ? TYR A 101 PHE A 103 AA2 2 CYS A 156 ? GLU A 166 ? CYS A 156 GLU A 166 AA2 3 VAL A 148 ? ASP A 153 ? VAL A 148 ASP A 153 AA2 4 THR A 111 ? TYR A 118 ? THR A 111 TYR A 118 AA2 5 SER A 121 ? ALA A 129 ? SER A 121 ALA A 129 AA3 1 TYR A 101 ? PHE A 103 ? TYR A 101 PHE A 103 AA3 2 CYS A 156 ? GLU A 166 ? CYS A 156 GLU A 166 AA3 3 HIS A 172 ? GLY A 174 ? HIS A 172 GLY A 174 AA4 1 VAL B 73 ? GLN B 74 ? VAL B 73 GLN B 74 AA4 2 PHE B 66 ? ALA B 70 ? PHE B 66 ALA B 70 AA4 3 MET B 17 ? CYS B 22 ? MET B 17 CYS B 22 AA4 4 THR B 25 ? LEU B 32 ? THR B 25 LEU B 32 AA4 5 VAL B 35 ? PRO B 39 ? VAL B 35 PRO B 39 AA4 6 VAL B 86 ? VAL B 91 ? VAL B 86 VAL B 91 AA4 7 VAL B 77 ? GLN B 83 ? VAL B 77 GLN B 83 AA5 1 TYR B 101 ? PHE B 103 ? TYR B 101 PHE B 103 AA5 2 CYS B 156 ? GLU B 166 ? CYS B 156 GLU B 166 AA5 3 VAL B 148 ? ASP B 153 ? VAL B 148 ASP B 153 AA5 4 THR B 111 ? TYR B 118 ? THR B 111 TYR B 118 AA5 5 SER B 121 ? ALA B 129 ? SER B 121 ALA B 129 AA6 1 TYR B 101 ? PHE B 103 ? TYR B 101 PHE B 103 AA6 2 CYS B 156 ? GLU B 166 ? CYS B 156 GLU B 166 AA6 3 HIS B 172 ? GLY B 174 ? HIS B 172 GLY B 174 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 73 ? O VAL A 73 N ALA A 70 ? N ALA A 70 AA1 2 3 O GLN A 69 ? O GLN A 69 N GLN A 19 ? N GLN A 19 AA1 3 4 N VAL A 18 ? N VAL A 18 O GLY A 29 ? O GLY A 29 AA1 4 5 N LEU A 30 ? N LEU A 30 O TYR A 37 ? O TYR A 37 AA1 5 6 N CYS A 38 ? N CYS A 38 O LEU A 87 ? O LEU A 87 AA1 6 7 O VAL A 86 ? O VAL A 86 N GLN A 83 ? N GLN A 83 AA2 1 2 N LYS A 102 ? N LYS A 102 O VAL A 157 ? O VAL A 157 AA2 2 3 O SER A 158 ? O SER A 158 N ASN A 151 ? N ASN A 151 AA2 3 4 O PHE A 150 ? O PHE A 150 N SER A 113 ? N SER A 113 AA2 4 5 N ALA A 116 ? N ALA A 116 O SER A 123 ? O SER A 123 AA3 1 2 N LYS A 102 ? N LYS A 102 O VAL A 157 ? O VAL A 157 AA3 2 3 N HIS A 164 ? N HIS A 164 O ALA A 173 ? O ALA A 173 AA4 1 2 O VAL B 73 ? O VAL B 73 N ALA B 70 ? N ALA B 70 AA4 2 3 O GLN B 69 ? O GLN B 69 N GLN B 19 ? N GLN B 19 AA4 3 4 N VAL B 18 ? N VAL B 18 O GLY B 29 ? O GLY B 29 AA4 4 5 N LEU B 30 ? N LEU B 30 O TYR B 37 ? O TYR B 37 AA4 5 6 N CYS B 38 ? N CYS B 38 O LEU B 87 ? O LEU B 87 AA4 6 7 O VAL B 86 ? O VAL B 86 N GLN B 83 ? N GLN B 83 AA5 1 2 N LYS B 102 ? N LYS B 102 O VAL B 157 ? O VAL B 157 AA5 2 3 O SER B 158 ? O SER B 158 N ASN B 151 ? N ASN B 151 AA5 3 4 O PHE B 150 ? O PHE B 150 N SER B 113 ? N SER B 113 AA5 4 5 N ALA B 116 ? N ALA B 116 O SER B 123 ? O SER B 123 AA6 1 2 N LYS B 102 ? N LYS B 102 O VAL B 157 ? O VAL B 157 AA6 2 3 N MET B 165 ? N MET B 165 O ALA B 173 ? O ALA B 173 # _atom_sites.entry_id 8EKE _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 MET 6 6 6 MET MET A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 CYS 85 85 85 CYS CYS A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 CYS 117 117 117 CYS CYS A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 CYS 128 128 128 CYS CYS A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 MET 130 130 130 MET MET A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 CYS 156 156 156 CYS CYS A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 CYS 160 160 160 CYS CYS A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 MET 162 162 162 MET MET A . n A 1 163 HIS 163 163 163 HIS HIS A . n A 1 164 HIS 164 164 164 HIS HIS A . n A 1 165 MET 165 165 165 MET MET A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 PRO 168 168 168 PRO PRO A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 HIS 172 172 172 HIS HIS A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 PHE 185 185 185 PHE PHE A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 GLN 189 189 189 GLN GLN A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 TRP 207 207 207 TRP TRP A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 TYR 209 209 209 TYR TYR A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ASN 214 214 214 ASN ASN A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 TRP 218 218 218 TRP TRP A . n A 1 219 PHE 219 219 219 PHE PHE A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 ARG 222 222 222 ARG ARG A . n A 1 223 PHE 223 223 223 PHE PHE A . n A 1 224 THR 224 224 224 THR THR A . n A 1 225 THR 225 225 225 THR THR A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 MET 235 235 235 MET MET A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 TYR 237 237 237 TYR TYR A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 TYR 239 239 239 TYR TYR A . n A 1 240 GLU 240 240 240 GLU GLU A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 ASP 245 245 245 ASP ASP A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 LEU 250 250 250 LEU LEU A . n A 1 251 GLY 251 251 251 GLY GLY A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 SER 254 254 254 SER SER A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 GLN 256 256 256 GLN GLN A . n A 1 257 THR 257 257 257 THR THR A . n A 1 258 GLY 258 258 258 GLY GLY A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 ASP 263 263 263 ASP ASP A . n A 1 264 MET 264 264 264 MET MET A . n A 1 265 CYS 265 265 265 CYS CYS A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 LYS 269 269 269 LYS LYS A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 GLN 273 273 273 GLN GLN A . n A 1 274 ASN 274 274 274 ASN ASN A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 MET 276 276 276 MET MET A . n A 1 277 ASN 277 277 277 ASN ASN A . n A 1 278 GLY 278 278 278 GLY GLY A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 THR 280 280 280 THR THR A . n A 1 281 ILE 281 281 281 ILE ILE A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 GLY 283 283 283 GLY GLY A . n A 1 284 SER 284 284 284 SER SER A . n A 1 285 ALA 285 285 285 ALA ALA A . n A 1 286 LEU 286 286 286 LEU LEU A . n A 1 287 LEU 287 287 287 LEU LEU A . n A 1 288 GLU 288 288 288 GLU GLU A . n A 1 289 ASP 289 289 289 ASP ASP A . n A 1 290 GLU 290 290 290 GLU GLU A . n A 1 291 PHE 291 291 291 PHE PHE A . n A 1 292 THR 292 292 292 THR THR A . n A 1 293 PRO 293 293 293 PRO PRO A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 ASP 295 295 295 ASP ASP A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 VAL 297 297 297 VAL VAL A . n A 1 298 ARG 298 298 298 ARG ARG A . n A 1 299 GLN 299 299 299 GLN GLN A . n A 1 300 CYS 300 300 300 CYS CYS A . n A 1 301 SER 301 301 301 SER SER A . n A 1 302 GLY 302 302 302 GLY GLY A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 THR 304 304 304 THR THR A . n A 1 305 PHE 305 305 305 PHE PHE A . n A 1 306 GLN 306 306 ? ? ? A . n B 1 1 SER 1 1 1 SER SER B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 PHE 3 3 3 PHE PHE B . n B 1 4 ARG 4 4 4 ARG ARG B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 MET 6 6 6 MET MET B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 PHE 8 8 8 PHE PHE B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 CYS 16 16 16 CYS CYS B . n B 1 17 MET 17 17 17 MET MET B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 CYS 22 22 22 CYS CYS B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 THR 24 24 24 THR THR B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 ASN 28 28 28 ASN ASN B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 TRP 31 31 31 TRP TRP B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 ASP 33 33 33 ASP ASP B . n B 1 34 ASP 34 34 34 ASP ASP B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 TYR 37 37 37 TYR TYR B . n B 1 38 CYS 38 38 38 CYS CYS B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 ARG 40 40 40 ARG ARG B . n B 1 41 HIS 41 41 41 HIS HIS B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 CYS 44 44 44 CYS CYS B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 GLU 47 47 47 GLU GLU B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 MET 49 49 49 MET MET B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 ASN 51 51 51 ASN ASN B . n B 1 52 PRO 52 52 52 PRO PRO B . n B 1 53 ASN 53 53 53 ASN ASN B . n B 1 54 TYR 54 54 54 TYR TYR B . n B 1 55 GLU 55 55 55 GLU GLU B . n B 1 56 ASP 56 56 56 ASP ASP B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 ARG 60 60 60 ARG ARG B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 SER 62 62 62 SER SER B . n B 1 63 ASN 63 63 63 ASN ASN B . n B 1 64 HIS 64 64 64 HIS HIS B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 PHE 66 66 66 PHE PHE B . n B 1 67 LEU 67 67 67 LEU LEU B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 GLN 69 69 69 GLN GLN B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 GLY 71 71 71 GLY GLY B . n B 1 72 ASN 72 72 72 ASN ASN B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 ARG 76 76 76 ARG ARG B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 ILE 78 78 78 ILE ILE B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 HIS 80 80 80 HIS HIS B . n B 1 81 SER 81 81 81 SER SER B . n B 1 82 MET 82 82 82 MET MET B . n B 1 83 GLN 83 83 83 GLN GLN B . n B 1 84 ASN 84 84 84 ASN ASN B . n B 1 85 CYS 85 85 85 CYS CYS B . n B 1 86 VAL 86 86 86 VAL VAL B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 LYS 88 88 88 LYS LYS B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 ASP 92 92 92 ASP ASP B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 ASN 95 95 95 ASN ASN B . n B 1 96 PRO 96 96 96 PRO PRO B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 THR 98 98 98 THR THR B . n B 1 99 PRO 99 99 99 PRO PRO B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 TYR 101 101 101 TYR TYR B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 PHE 103 103 103 PHE PHE B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 PRO 108 108 108 PRO PRO B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 GLN 110 110 110 GLN GLN B . n B 1 111 THR 111 111 111 THR THR B . n B 1 112 PHE 112 112 112 PHE PHE B . n B 1 113 SER 113 113 113 SER SER B . n B 1 114 VAL 114 114 114 VAL VAL B . n B 1 115 LEU 115 115 115 LEU LEU B . n B 1 116 ALA 116 116 116 ALA ALA B . n B 1 117 CYS 117 117 117 CYS CYS B . n B 1 118 TYR 118 118 118 TYR TYR B . n B 1 119 ASN 119 119 119 ASN ASN B . n B 1 120 GLY 120 120 120 GLY GLY B . n B 1 121 SER 121 121 121 SER SER B . n B 1 122 PRO 122 122 122 PRO PRO B . n B 1 123 SER 123 123 123 SER SER B . n B 1 124 GLY 124 124 124 GLY GLY B . n B 1 125 VAL 125 125 125 VAL VAL B . n B 1 126 TYR 126 126 126 TYR TYR B . n B 1 127 GLN 127 127 127 GLN GLN B . n B 1 128 CYS 128 128 128 CYS CYS B . n B 1 129 ALA 129 129 129 ALA ALA B . n B 1 130 MET 130 130 130 MET MET B . n B 1 131 ARG 131 131 131 ARG ARG B . n B 1 132 PRO 132 132 132 PRO PRO B . n B 1 133 ASN 133 133 133 ASN ASN B . n B 1 134 PHE 134 134 134 PHE PHE B . n B 1 135 THR 135 135 135 THR THR B . n B 1 136 ILE 136 136 136 ILE ILE B . n B 1 137 LYS 137 137 137 LYS LYS B . n B 1 138 GLY 138 138 138 GLY GLY B . n B 1 139 SER 139 139 139 SER SER B . n B 1 140 PHE 140 140 140 PHE PHE B . n B 1 141 LEU 141 141 141 LEU LEU B . n B 1 142 ASN 142 142 142 ASN ASN B . n B 1 143 GLY 143 143 143 GLY GLY B . n B 1 144 SER 144 144 144 SER SER B . n B 1 145 ALA 145 145 145 ALA ALA B . n B 1 146 GLY 146 146 146 GLY GLY B . n B 1 147 SER 147 147 147 SER SER B . n B 1 148 VAL 148 148 148 VAL VAL B . n B 1 149 GLY 149 149 149 GLY GLY B . n B 1 150 PHE 150 150 150 PHE PHE B . n B 1 151 ASN 151 151 151 ASN ASN B . n B 1 152 ILE 152 152 152 ILE ILE B . n B 1 153 ASP 153 153 153 ASP ASP B . n B 1 154 TYR 154 154 154 TYR TYR B . n B 1 155 ASP 155 155 155 ASP ASP B . n B 1 156 CYS 156 156 156 CYS CYS B . n B 1 157 VAL 157 157 157 VAL VAL B . n B 1 158 SER 158 158 158 SER SER B . n B 1 159 PHE 159 159 159 PHE PHE B . n B 1 160 CYS 160 160 160 CYS CYS B . n B 1 161 TYR 161 161 161 TYR TYR B . n B 1 162 MET 162 162 162 MET MET B . n B 1 163 HIS 163 163 163 HIS HIS B . n B 1 164 HIS 164 164 164 HIS HIS B . n B 1 165 MET 165 165 165 MET MET B . n B 1 166 GLU 166 166 166 GLU GLU B . n B 1 167 LEU 167 167 167 LEU LEU B . n B 1 168 PRO 168 168 168 PRO PRO B . n B 1 169 THR 169 169 169 THR THR B . n B 1 170 GLY 170 170 170 GLY GLY B . n B 1 171 VAL 171 171 171 VAL VAL B . n B 1 172 HIS 172 172 172 HIS HIS B . n B 1 173 ALA 173 173 173 ALA ALA B . n B 1 174 GLY 174 174 174 GLY GLY B . n B 1 175 THR 175 175 175 THR THR B . n B 1 176 ASP 176 176 176 ASP ASP B . n B 1 177 LEU 177 177 177 LEU LEU B . n B 1 178 GLU 178 178 178 GLU GLU B . n B 1 179 GLY 179 179 179 GLY GLY B . n B 1 180 ASN 180 180 180 ASN ASN B . n B 1 181 PHE 181 181 181 PHE PHE B . n B 1 182 TYR 182 182 182 TYR TYR B . n B 1 183 GLY 183 183 183 GLY GLY B . n B 1 184 PRO 184 184 184 PRO PRO B . n B 1 185 PHE 185 185 185 PHE PHE B . n B 1 186 VAL 186 186 186 VAL VAL B . n B 1 187 ASP 187 187 187 ASP ASP B . n B 1 188 ARG 188 188 188 ARG ARG B . n B 1 189 GLN 189 189 189 GLN GLN B . n B 1 190 THR 190 190 190 THR THR B . n B 1 191 ALA 191 191 191 ALA ALA B . n B 1 192 GLN 192 192 192 GLN GLN B . n B 1 193 ALA 193 193 193 ALA ALA B . n B 1 194 ALA 194 194 194 ALA ALA B . n B 1 195 GLY 195 195 195 GLY GLY B . n B 1 196 THR 196 196 196 THR THR B . n B 1 197 ASP 197 197 197 ASP ASP B . n B 1 198 THR 198 198 198 THR THR B . n B 1 199 THR 199 199 199 THR THR B . n B 1 200 ILE 200 200 200 ILE ILE B . n B 1 201 THR 201 201 201 THR THR B . n B 1 202 VAL 202 202 202 VAL VAL B . n B 1 203 ASN 203 203 203 ASN ASN B . n B 1 204 VAL 204 204 204 VAL VAL B . n B 1 205 LEU 205 205 205 LEU LEU B . n B 1 206 ALA 206 206 206 ALA ALA B . n B 1 207 TRP 207 207 207 TRP TRP B . n B 1 208 LEU 208 208 208 LEU LEU B . n B 1 209 TYR 209 209 209 TYR TYR B . n B 1 210 ALA 210 210 210 ALA ALA B . n B 1 211 ALA 211 211 211 ALA ALA B . n B 1 212 VAL 212 212 212 VAL VAL B . n B 1 213 ILE 213 213 213 ILE ILE B . n B 1 214 ASN 214 214 214 ASN ASN B . n B 1 215 GLY 215 215 215 GLY GLY B . n B 1 216 ASP 216 216 216 ASP ASP B . n B 1 217 ARG 217 217 217 ARG ARG B . n B 1 218 TRP 218 218 218 TRP TRP B . n B 1 219 PHE 219 219 219 PHE PHE B . n B 1 220 LEU 220 220 220 LEU LEU B . n B 1 221 ASN 221 221 221 ASN ASN B . n B 1 222 ARG 222 222 222 ARG ARG B . n B 1 223 PHE 223 223 223 PHE PHE B . n B 1 224 THR 224 224 224 THR THR B . n B 1 225 THR 225 225 225 THR THR B . n B 1 226 THR 226 226 226 THR THR B . n B 1 227 LEU 227 227 227 LEU LEU B . n B 1 228 ASN 228 228 228 ASN ASN B . n B 1 229 ASP 229 229 229 ASP ASP B . n B 1 230 PHE 230 230 230 PHE PHE B . n B 1 231 ASN 231 231 231 ASN ASN B . n B 1 232 LEU 232 232 232 LEU LEU B . n B 1 233 VAL 233 233 233 VAL VAL B . n B 1 234 ALA 234 234 234 ALA ALA B . n B 1 235 MET 235 235 235 MET MET B . n B 1 236 LYS 236 236 236 LYS LYS B . n B 1 237 TYR 237 237 237 TYR TYR B . n B 1 238 ASN 238 238 238 ASN ASN B . n B 1 239 TYR 239 239 239 TYR TYR B . n B 1 240 GLU 240 240 240 GLU GLU B . n B 1 241 PRO 241 241 241 PRO PRO B . n B 1 242 LEU 242 242 242 LEU LEU B . n B 1 243 THR 243 243 243 THR THR B . n B 1 244 GLN 244 244 244 GLN GLN B . n B 1 245 ASP 245 245 245 ASP ASP B . n B 1 246 HIS 246 246 246 HIS HIS B . n B 1 247 VAL 247 247 247 VAL VAL B . n B 1 248 ASP 248 248 248 ASP ASP B . n B 1 249 ILE 249 249 249 ILE ILE B . n B 1 250 LEU 250 250 250 LEU LEU B . n B 1 251 GLY 251 251 251 GLY GLY B . n B 1 252 PRO 252 252 252 PRO PRO B . n B 1 253 LEU 253 253 253 LEU LEU B . n B 1 254 SER 254 254 254 SER SER B . n B 1 255 ALA 255 255 255 ALA ALA B . n B 1 256 GLN 256 256 256 GLN GLN B . n B 1 257 THR 257 257 257 THR THR B . n B 1 258 GLY 258 258 258 GLY GLY B . n B 1 259 ILE 259 259 259 ILE ILE B . n B 1 260 ALA 260 260 260 ALA ALA B . n B 1 261 VAL 261 261 261 VAL VAL B . n B 1 262 LEU 262 262 262 LEU LEU B . n B 1 263 ASP 263 263 263 ASP ASP B . n B 1 264 MET 264 264 264 MET MET B . n B 1 265 CYS 265 265 265 CYS CYS B . n B 1 266 ALA 266 266 266 ALA ALA B . n B 1 267 SER 267 267 267 SER SER B . n B 1 268 LEU 268 268 268 LEU LEU B . n B 1 269 LYS 269 269 269 LYS LYS B . n B 1 270 GLU 270 270 270 GLU GLU B . n B 1 271 LEU 271 271 271 LEU LEU B . n B 1 272 LEU 272 272 272 LEU LEU B . n B 1 273 GLN 273 273 273 GLN GLN B . n B 1 274 ASN 274 274 274 ASN ASN B . n B 1 275 GLY 275 275 275 GLY GLY B . n B 1 276 MET 276 276 276 MET MET B . n B 1 277 ASN 277 277 277 ASN ASN B . n B 1 278 GLY 278 278 278 GLY GLY B . n B 1 279 ARG 279 279 279 ARG ARG B . n B 1 280 THR 280 280 280 THR THR B . n B 1 281 ILE 281 281 281 ILE ILE B . n B 1 282 LEU 282 282 282 LEU LEU B . n B 1 283 GLY 283 283 283 GLY GLY B . n B 1 284 SER 284 284 284 SER SER B . n B 1 285 ALA 285 285 285 ALA ALA B . n B 1 286 LEU 286 286 286 LEU LEU B . n B 1 287 LEU 287 287 287 LEU LEU B . n B 1 288 GLU 288 288 288 GLU GLU B . n B 1 289 ASP 289 289 289 ASP ASP B . n B 1 290 GLU 290 290 290 GLU GLU B . n B 1 291 PHE 291 291 291 PHE PHE B . n B 1 292 THR 292 292 292 THR THR B . n B 1 293 PRO 293 293 293 PRO PRO B . n B 1 294 PHE 294 294 294 PHE PHE B . n B 1 295 ASP 295 295 295 ASP ASP B . n B 1 296 VAL 296 296 296 VAL VAL B . n B 1 297 VAL 297 297 297 VAL VAL B . n B 1 298 ARG 298 298 298 ARG ARG B . n B 1 299 GLN 299 299 299 GLN GLN B . n B 1 300 CYS 300 300 300 CYS CYS B . n B 1 301 SER 301 301 301 SER SER B . n B 1 302 GLY 302 302 302 GLY GLY B . n B 1 303 VAL 303 303 303 VAL VAL B . n B 1 304 THR 304 304 304 THR THR B . n B 1 305 PHE 305 305 305 PHE PHE B . n B 1 306 GLN 306 306 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email kum14@psu.edu _pdbx_contact_author.name_first KATSUHIKO _pdbx_contact_author.name_last MURAKAMI _pdbx_contact_author.name_mi S _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2244-0501 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-04-26 2 'Structure model' 1 1 2023-05-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_volume' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? phenix.real_space_refine ? ? ? 1.20.1_4487 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 # _pdbx_entry_details.compound_details ;Main protease (Mpro) of SARS CoV-2 virus. The protease is critical for the processing of pp1a/b polyprotein for the release of functional non-structural proteins. ; _pdbx_entry_details.entry_id 8EKE _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.source_details ? # _em_3d_fitting.entry_id 8EKE _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 8EKE _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 95597 _em_3d_reconstruction.resolution 3.36 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'SARS CoV-2 Main protease (Mpro) nsp5 apo structure' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 8EKE _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode OTHER _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 750 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 8EKE _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8EKE _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 33 ? ? 53.48 -120.59 2 1 ASN A 84 ? ? 53.70 -104.70 3 1 TYR A 154 ? ? 56.93 -88.11 4 1 ASP B 33 ? ? 53.84 -121.40 5 1 ASN B 84 ? ? 53.44 -112.08 6 1 TYR B 154 ? ? 56.83 -84.55 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 14 ? CG ? A GLU 14 CG 2 1 Y 1 A GLU 14 ? CD ? A GLU 14 CD 3 1 Y 1 A GLU 14 ? OE1 ? A GLU 14 OE1 4 1 Y 1 A GLU 14 ? OE2 ? A GLU 14 OE2 5 1 Y 1 A ARG 40 ? CG ? A ARG 40 CG 6 1 Y 1 A ARG 40 ? CD ? A ARG 40 CD 7 1 Y 1 A ARG 40 ? NE ? A ARG 40 NE 8 1 Y 1 A ARG 40 ? CZ ? A ARG 40 CZ 9 1 Y 1 A ARG 40 ? NH1 ? A ARG 40 NH1 10 1 Y 1 A ARG 40 ? NH2 ? A ARG 40 NH2 11 1 Y 1 A LYS 61 ? CG ? A LYS 61 CG 12 1 Y 1 A LYS 61 ? CD ? A LYS 61 CD 13 1 Y 1 A LYS 61 ? CE ? A LYS 61 CE 14 1 Y 1 A LYS 61 ? NZ ? A LYS 61 NZ 15 1 Y 1 B ARG 40 ? CG ? B ARG 40 CG 16 1 Y 1 B ARG 40 ? CD ? B ARG 40 CD 17 1 Y 1 B ARG 40 ? NE ? B ARG 40 NE 18 1 Y 1 B ARG 40 ? CZ ? B ARG 40 CZ 19 1 Y 1 B ARG 40 ? NH1 ? B ARG 40 NH1 20 1 Y 1 B ARG 40 ? NH2 ? B ARG 40 NH2 21 1 Y 1 B LYS 61 ? CG ? B LYS 61 CG 22 1 Y 1 B LYS 61 ? CD ? B LYS 61 CD 23 1 Y 1 B LYS 61 ? CE ? B LYS 61 CE 24 1 Y 1 B LYS 61 ? NZ ? B LYS 61 NZ 25 1 Y 1 B TRP 207 ? CG ? B TRP 207 CG 26 1 Y 1 B TRP 207 ? CD1 ? B TRP 207 CD1 27 1 Y 1 B TRP 207 ? CD2 ? B TRP 207 CD2 28 1 Y 1 B TRP 207 ? NE1 ? B TRP 207 NE1 29 1 Y 1 B TRP 207 ? CE2 ? B TRP 207 CE2 30 1 Y 1 B TRP 207 ? CE3 ? B TRP 207 CE3 31 1 Y 1 B TRP 207 ? CZ2 ? B TRP 207 CZ2 32 1 Y 1 B TRP 207 ? CZ3 ? B TRP 207 CZ3 33 1 Y 1 B TRP 207 ? CH2 ? B TRP 207 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 306 ? A GLN 306 2 1 Y 1 B GLN 306 ? B GLN 306 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 20 mM C8H18N2O4S HEPES 1 2 100 mM NaCl 'SODIUM CHLORIDE' 1 3 0.5 mM C4H10O2S2 DTT # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.07 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1 _em_specimen.details 'Homogenous sample' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R35 GM131860' _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 #