data_8FB3 # _entry.id 8FB3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FB3 pdb_00008fb3 10.2210/pdb8fb3/pdb WWPDB D_1000270322 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'preQ1 (class 1 type 2) apo' 6vuh unspecified PDB 'preQ1 (class 1 type 2) bound' 6vui unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FB3 _pdbx_database_status.recvd_initial_deposition_date 2022-11-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wedekind, J.E.' 1 0000-0002-4269-4229 'Schroeder, G.M.' 2 0000-0001-6354-752X 'Jenkins, J.L.' 3 0000-0003-2548-3275 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nucleic Acids Res.' NARHAD 0389 1362-4962 ? ? 51 ? 2464 2484 'A riboswitch separated from its ribosome-binding site still regulates translation.' 2023 ? 10.1093/nar/gkad056 36762498 ? ? ? ? ? ? ? ? ? UK ? ? 1 'Nat Commun' ? ? 2041-1723 ? ? 13 ? 199 ? 'A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control.' 2022 ? 10.1101/512780v3 35017488 ? ? ? ? ? ? ? ? ? US ? ? 2 'Methods Mol Biol' ? ? 1940-6029 ? ? 2568 ? 53 73 'Isothermal Titration Calorimetry Analysis of a Cooperative Riboswitch Using an Interdependent-Sites Binding Model.' 2023 ? '10.1016/0003-2697(89)90213-3' 36227562 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schroeder, G.M.' 1 ? primary 'Akinyemi, O.' 2 ? primary 'Malik, J.' 3 ? primary 'Focht, C.M.' 4 ? primary 'Pritchett, E.M.' 5 ? primary 'Baker, C.D.' 6 ? primary 'McSally, J.P.' 7 ? primary 'Jenkins, J.L.' 8 ? primary 'Mathews, D.H.' 9 ? primary 'Wedekind, J.E.' 10 ? 1 'Schroeder, G.M.' 11 0000-0001-6354-752X 1 'Cavender, C.E.' 12 0000-0002-5899-7953 1 'Blau, M.E.' 13 0000-0002-8948-4982 1 'Jenkins, J.L.' 14 0000-0003-2548-3275 1 'Mathews, D.H.' 15 0000-0002-2907-6557 1 'Wedekind, J.E.' 16 0000-0002-4269-4229 2 'Cavender, C.E.' 17 0000-0002-5899-7953 2 'Schroeder, G.M.' 18 0000-0001-6354-752X 2 'Mathews, D.H.' 19 0000-0002-2907-6557 2 'Wedekind, J.E.' 20 0000-0002-4269-4229 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 100.53 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8FB3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.867 _cell.length_a_esd ? _cell.length_b 67.612 _cell.length_b_esd ? _cell.length_c 50.589 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8FB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (34-MER) Riboswitch' 10850.541 3 ? ? ? ? 2 non-polymer syn 7-DEAZA-7-AMINOMETHYL-GUANINE 179.179 6 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UGUGGUUCGCAACCAUCCCACAUAAAAAAACUAG _entity_poly.pdbx_seq_one_letter_code_can UGUGGUUCGCAACCAUCCCACAUAAAAAAACUAG _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 U n 1 4 G n 1 5 G n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 C n 1 11 A n 1 12 A n 1 13 C n 1 14 C n 1 15 A n 1 16 U n 1 17 C n 1 18 C n 1 19 C n 1 20 A n 1 21 C n 1 22 A n 1 23 U n 1 24 A n 1 25 A n 1 26 A n 1 27 A n 1 28 A n 1 29 A n 1 30 A n 1 31 C n 1 32 U n 1 33 A n 1 34 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 34 _pdbx_entity_src_syn.organism_scientific 'Carnobacterium antarcticum' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2126436 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8FB3 _struct_ref.pdbx_db_accession 8FB3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8FB3 A 1 ? 34 ? 8FB3 1 ? 34 ? 1 34 2 1 8FB3 B 1 ? 34 ? 8FB3 1 ? 34 ? 1 34 3 1 8FB3 C 1 ? 34 ? 8FB3 1 ? 34 ? 1 34 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PRF non-polymer . 7-DEAZA-7-AMINOMETHYL-GUANINE ? 'C7 H9 N5 O' 179.179 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FB3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.43 _exptl_crystal.description rod _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG 8000, 0.2 M ammonium acetate, 0.01 M magnesium acetate tetrahydrate, and 0.05 M sodium cacodylate pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details 'Flat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M2' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-03-21 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Liquid nitrogen-cooled double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8FB3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.0 _reflns.d_resolution_low 35.2 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5588 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 99.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.051 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.2 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 871 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.3 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.339 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 92.2 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 111.8 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'NCS restraints were applied throughout except for the last cycle of refinement.' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8FB3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.00 _refine.ls_d_res_low 35.16 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5478 _refine.ls_number_reflns_R_free 548 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.32 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2286 _refine.ls_R_factor_R_free 0.2651 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2245 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.75 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.29 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2071 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2080 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 35.16 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 2309 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.726 ? 3576 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.685 ? 1121 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.028 ? 469 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 100 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.00 3.30 . . 130 1174 94.00 . . . . 0.2906 . . . . . . . . . . . 0.3442 'X-RAY DIFFRACTION' 3.30 3.78 . . 138 1233 98.00 . . . . 0.2825 . . . . . . . . . . . 0.2860 'X-RAY DIFFRACTION' 3.78 4.76 . . 139 1247 99.00 . . . . 0.2591 . . . . . . . . . . . 0.2491 'X-RAY DIFFRACTION' 4.76 35.16 . . 141 1276 99.00 . . . . 0.1818 . . . . . . . . . . . 0.2530 # _struct.entry_id 8FB3 _struct.title 'PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FB3 _struct_keywords.text 'riboswitch, Shine-Dalgarno sequence, pseudoknot, A-amino kissing motif, quintuple-base transition motif, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 12 OP1 ? ? ? 1_555 G MG . MG ? ? A A 12 A MG 104 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc2 metalc ? ? A C 13 OP1 ? ? ? 1_555 G MG . MG ? ? A C 13 A MG 104 1_555 ? ? ? ? ? ? ? 2.623 ? ? metalc3 metalc ? ? A U 32 OP1 ? ? ? 1_555 F MG . MG ? ? A U 32 A MG 103 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc4 metalc ? ? F MG . MG ? ? ? 1_555 B A 12 OP1 ? ? A MG 103 B A 12 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc5 metalc ? ? F MG . MG ? ? ? 1_555 B C 13 OP1 ? ? A MG 103 B C 13 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc6 metalc ? ? C A 12 OP1 ? ? ? 1_555 L MG . MG ? ? C A 12 C MG 103 1_555 ? ? ? ? ? ? ? 2.895 ? ? metalc7 metalc ? ? C C 13 OP1 ? ? ? 1_555 L MG . MG ? ? C C 13 C MG 103 1_555 ? ? ? ? ? ? ? 2.416 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 1 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 1 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A A 20 N1 ? ? A G 2 A A 20 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A A 20 N6 ? ? A G 2 A A 20 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 2 N2 ? ? ? 1_555 A A 24 N1 ? ? A G 2 A A 24 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog9 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 20 N1 ? ? A U 3 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 3 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 4 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 4 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 4 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 4 N3 ? ? ? 1_555 A A 26 N6 ? ? A G 4 A A 26 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 28 N1 ? ? A G 5 A A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog19 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 28 N6 ? ? A G 5 A A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog20 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 29 N7 ? ? A U 6 A A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog21 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 6 A A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog22 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 30 N7 ? ? A U 7 A A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog23 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 7 A A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog24 hydrog ? ? A C 8 N3 ? ? ? 1_555 A A 12 N6 ? ? A C 8 A A 12 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog25 hydrog ? ? A C 8 N4 ? ? ? 1_555 A A 12 N1 ? ? A C 8 A A 12 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog26 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 33 N1 ? ? A G 9 A A 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog27 hydrog ? ? A G 9 N3 ? ? ? 1_555 A A 33 N6 ? ? A G 9 A A 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog28 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 10 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 10 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 10 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 12 A U 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog32 hydrog ? ? A A 12 N7 ? ? ? 1_555 A U 32 N3 ? ? A A 12 A U 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A C 18 O2 ? ? ? 1_555 A A 29 N6 ? ? A C 18 A A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A C 19 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 19 A A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A C 21 O2 ? ? ? 1_555 A A 25 N6 ? ? A C 21 A A 25 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog36 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 2 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 2 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 2 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 20 N1 ? ? B U 3 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 20 N6 ? ? B U 3 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 19 N3 ? ? B G 4 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 19 O2 ? ? B G 4 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 19 N4 ? ? B G 4 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 18 N3 ? ? B G 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 18 O2 ? ? B G 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 18 N4 ? ? B G 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 5 N2 ? ? ? 1_555 B A 28 N1 ? ? B G 5 B A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? B G 5 N3 ? ? ? 1_555 B A 28 N6 ? ? B G 5 B A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog49 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 29 N7 ? ? B U 6 B A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog50 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 29 N6 ? ? B U 6 B A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog51 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 30 N7 ? ? B U 7 B A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog52 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 7 B A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog53 hydrog ? ? B C 8 N3 ? ? ? 1_555 B A 12 N6 ? ? B C 8 B A 12 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog54 hydrog ? ? B C 8 N4 ? ? ? 1_555 B A 12 N1 ? ? B C 8 B A 12 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog55 hydrog ? ? B G 9 N2 ? ? ? 1_555 B A 33 N1 ? ? B G 9 B A 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? B G 9 N3 ? ? ? 1_555 B A 33 N6 ? ? B G 9 B A 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? B A 12 N6 ? ? ? 1_555 B U 32 O4 ? ? B A 12 B U 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog58 hydrog ? ? B A 12 N7 ? ? ? 1_555 B U 32 N3 ? ? B A 12 B U 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog59 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 34 N2 ? ? B C 14 B G 34 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog60 hydrog ? ? B C 18 O2 ? ? ? 1_555 B A 29 N6 ? ? B C 18 B A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog61 hydrog ? ? B C 19 O2 ? ? ? 1_555 B A 27 N6 ? ? B C 19 B A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog62 hydrog ? ? C U 1 N3 ? ? ? 1_555 C A 22 N1 ? ? C U 1 C A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C U 1 O4 ? ? ? 1_555 C A 22 N6 ? ? C U 1 C A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 21 N3 ? ? C G 2 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 21 O2 ? ? C G 2 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 21 N4 ? ? C G 2 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C U 3 N3 ? ? ? 1_555 C A 20 N1 ? ? C U 3 C A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C U 3 O4 ? ? ? 1_555 C A 20 N6 ? ? C U 3 C A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 19 N3 ? ? C G 4 C C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 19 O2 ? ? C G 4 C C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 19 N4 ? ? C G 4 C C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 18 N3 ? ? C G 5 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 18 O2 ? ? C G 5 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 18 N4 ? ? C G 5 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C G 5 N2 ? ? ? 1_555 C A 28 N1 ? ? C G 5 C A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog76 hydrog ? ? C G 5 N3 ? ? ? 1_555 C A 28 N6 ? ? C G 5 C A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog77 hydrog ? ? C U 6 N3 ? ? ? 1_555 C A 29 N7 ? ? C U 6 C A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog78 hydrog ? ? C U 6 O4 ? ? ? 1_555 C A 29 N6 ? ? C U 6 C A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog79 hydrog ? ? C U 7 N3 ? ? ? 1_555 C A 30 N7 ? ? C U 7 C A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog80 hydrog ? ? C U 7 O4 ? ? ? 1_555 C A 30 N6 ? ? C U 7 C A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog81 hydrog ? ? C C 8 N3 ? ? ? 1_555 C A 12 N6 ? ? C C 8 C A 12 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog82 hydrog ? ? C C 8 N4 ? ? ? 1_555 C A 12 N1 ? ? C C 8 C A 12 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog83 hydrog ? ? C G 9 N2 ? ? ? 1_555 C A 33 N1 ? ? C G 9 C A 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog84 hydrog ? ? C G 9 N3 ? ? ? 1_555 C A 33 N6 ? ? C G 9 C A 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog85 hydrog ? ? C A 12 N6 ? ? ? 1_555 C U 32 O4 ? ? C A 12 C U 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog86 hydrog ? ? C A 12 N7 ? ? ? 1_555 C U 32 N3 ? ? C A 12 C U 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog87 hydrog ? ? C C 14 N3 ? ? ? 1_555 C G 34 N2 ? ? C C 14 C G 34 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog88 hydrog ? ? C C 18 O2 ? ? ? 1_555 C A 29 N6 ? ? C C 18 C A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog89 hydrog ? ? C C 19 O2 ? ? ? 1_555 C A 27 N6 ? ? C C 19 C A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog90 hydrog ? ? C C 21 O2 ? ? ? 1_555 C A 25 N6 ? ? C C 21 C A 25 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8FB3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023885 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004440 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014790 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020106 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n A 1 20 A 20 20 20 A A A . n A 1 21 C 21 21 21 C C A . n A 1 22 A 22 22 22 A A A . n A 1 23 U 23 23 23 U U A . n A 1 24 A 24 24 24 A A A . n A 1 25 A 25 25 25 A A A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 U 32 32 32 U U A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n B 1 1 U 1 1 1 U U B . n B 1 2 G 2 2 2 G G B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 U 6 6 6 U U B . n B 1 7 U 7 7 7 U U B . n B 1 8 C 8 8 8 C C B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n B 1 11 A 11 11 11 A A B . n B 1 12 A 12 12 12 A A B . n B 1 13 C 13 13 13 C C B . n B 1 14 C 14 14 14 C C B . n B 1 15 A 15 15 15 A A B . n B 1 16 U 16 16 16 U U B . n B 1 17 C 17 17 17 C C B . n B 1 18 C 18 18 18 C C B . n B 1 19 C 19 19 19 C C B . n B 1 20 A 20 20 20 A A B . n B 1 21 C 21 21 21 C C B . n B 1 22 A 22 22 22 A A B . n B 1 23 U 23 23 ? ? ? B . n B 1 24 A 24 24 ? ? ? B . n B 1 25 A 25 25 ? ? ? B . n B 1 26 A 26 26 ? ? ? B . n B 1 27 A 27 27 27 A A B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 A 30 30 30 A A B . n B 1 31 C 31 31 31 C C B . n B 1 32 U 32 32 32 U U B . n B 1 33 A 33 33 33 A A B . n B 1 34 G 34 34 34 G G B . n C 1 1 U 1 1 1 U U C . n C 1 2 G 2 2 2 G G C . n C 1 3 U 3 3 3 U U C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 U 7 7 7 U U C . n C 1 8 C 8 8 8 C C C . n C 1 9 G 9 9 9 G G C . n C 1 10 C 10 10 10 C C C . n C 1 11 A 11 11 11 A A C . n C 1 12 A 12 12 12 A A C . n C 1 13 C 13 13 13 C C C . n C 1 14 C 14 14 14 C C C . n C 1 15 A 15 15 15 A A C . n C 1 16 U 16 16 16 U U C . n C 1 17 C 17 17 17 C C C . n C 1 18 C 18 18 18 C C C . n C 1 19 C 19 19 19 C C C . n C 1 20 A 20 20 20 A A C . n C 1 21 C 21 21 21 C C C . n C 1 22 A 22 22 22 A A C . n C 1 23 U 23 23 ? ? ? C . n C 1 24 A 24 24 24 A A C . n C 1 25 A 25 25 25 A A C . n C 1 26 A 26 26 26 A A C . n C 1 27 A 27 27 27 A A C . n C 1 28 A 28 28 28 A A C . n C 1 29 A 29 29 29 A A C . n C 1 30 A 30 30 30 A A C . n C 1 31 C 31 31 31 C C C . n C 1 32 U 32 32 32 U U C . n C 1 33 A 33 33 33 A A C . n C 1 34 G 34 34 34 G G C . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email oseph_wedekind@urmc.rochester.edu _pdbx_contact_author.name_first Joseph _pdbx_contact_author.name_last Wedekind _pdbx_contact_author.name_mi E _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4269-4229 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PRF 1 101 101 PRF PRF A . E 2 PRF 1 102 201 PRF PRF A . F 3 MG 1 103 1 MG MG A . G 3 MG 1 104 2 MG MG A . H 2 PRF 1 101 101 PRF PRF B . I 2 PRF 1 102 201 PRF PRF B . J 2 PRF 1 101 101 PRF PRF C . K 2 PRF 1 102 201 PRF PRF C . L 3 MG 1 103 3 MG MG C . M 4 HOH 1 201 1 HOH HOH B . M 4 HOH 2 202 2 HOH HOH B . N 4 HOH 1 201 6 HOH HOH C . N 4 HOH 2 202 3 HOH HOH C . N 4 HOH 3 203 5 HOH HOH C . N 4 HOH 4 204 4 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G 2 1 B,H,I,M 3 1 C,J,K,L,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 12 ? A A 12 ? 1_555 MG ? G MG . ? A MG 104 ? 1_555 OP1 ? A C 13 ? A C 13 ? 1_555 68.5 ? 2 OP1 ? A U 32 ? A U 32 ? 1_555 MG ? F MG . ? A MG 103 ? 1_555 OP1 ? B A 12 ? B A 12 ? 1_555 105.3 ? 3 OP1 ? A U 32 ? A U 32 ? 1_555 MG ? F MG . ? A MG 103 ? 1_555 OP1 ? B C 13 ? B C 13 ? 1_555 127.2 ? 4 OP1 ? B A 12 ? B A 12 ? 1_555 MG ? F MG . ? A MG 103 ? 1_555 OP1 ? B C 13 ? B C 13 ? 1_555 73.5 ? 5 OP1 ? C A 12 ? C A 12 ? 1_555 MG ? L MG . ? C MG 103 ? 1_555 OP1 ? C C 13 ? C C 13 ? 1_555 70.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-02-22 2 'Structure model' 1 1 2023-03-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -19.3574 -14.2561 -17.1237 1.3792 ? -0.1425 ? 0.4361 ? 0.6008 ? -0.0315 ? 1.4234 ? 6.1803 ? 1.9792 ? -4.4713 ? 4.8658 ? -3.3046 ? 4.0670 ? 0.1241 ? 0.0162 ? 1.1628 ? 1.9731 ? -0.4627 ? 1.8484 ? -1.9469 ? -0.0227 ? 0.4274 ? 2 'X-RAY DIFFRACTION' ? refined -7.1562 -0.1712 -20.1589 1.1634 ? -0.4495 ? -0.0718 ? 1.0288 ? 0.1778 ? 1.7697 ? 1.3827 ? -1.7240 ? 1.4080 ? 2.4398 ? -1.8320 ? 1.4618 ? 1.6582 ? 0.1453 ? 0.0824 ? 3.1371 ? -1.9859 ? -0.4876 ? -2.0668 ? 1.2640 ? 0.8106 ? 3 'X-RAY DIFFRACTION' ? refined -16.1487 4.0960 -23.2131 1.7609 ? 0.3427 ? 0.1142 ? 0.7728 ? -0.0150 ? 1.5901 ? 5.9284 ? 3.3588 ? 0.3368 ? 3.9783 ? -0.9782 ? 5.7175 ? 0.8656 ? -0.5240 ? 2.8025 ? 1.8208 ? 0.1045 ? 1.7093 ? -0.0634 ? -1.3016 ? -0.5403 ? 4 'X-RAY DIFFRACTION' ? refined -21.2354 -7.7871 -27.1958 1.4497 ? 0.0486 ? 0.4998 ? 1.6235 ? -0.0470 ? 1.4633 ? 7.7281 ? -7.7300 ? 3.4406 ? 2.0598 ? 2.8802 ? 7.5295 ? 2.1062 ? 1.4741 ? 1.1186 ? 2.8743 ? -3.7829 ? 1.6219 ? -1.9360 ? -3.2366 ? 0.9568 ? 5 'X-RAY DIFFRACTION' ? refined -11.0455 -15.9547 -21.4785 0.8710 ? 0.0553 ? 0.2425 ? 0.9303 ? 0.3067 ? 1.1738 ? 9.4821 ? -0.0637 ? 3.0887 ? 2.0267 ? 2.5432 ? 1.2994 ? -0.0033 ? 1.6207 ? 0.3635 ? 1.6983 ? -0.3139 ? -2.2036 ? -0.9130 ? -0.6785 ? -0.1559 ? 6 'X-RAY DIFFRACTION' ? refined -15.5908 -18.8555 -10.3692 2.1739 ? -0.4067 ? -0.0614 ? 1.2444 ? 0.2377 ? 1.4599 ? 4.8525 ? -3.5159 ? -1.5890 ? 2.0347 ? 9.4303 ? 2.1130 ? -0.6955 ? -1.9118 ? 0.1960 ? 5.0087 ? -1.2159 ? 1.3347 ? 0.4567 ? 0.1337 ? 1.8882 ? 7 'X-RAY DIFFRACTION' ? refined -4.0698 -8.7381 -19.7750 1.0446 ? -0.0758 ? -0.1860 ? 1.1465 ? 0.1161 ? 1.5474 ? 2.1565 ? 0.6531 ? -4.1600 ? 2.0847 ? -1.0580 ? 2.0244 ? 1.6035 ? -1.8044 ? 0.6480 ? 1.0885 ? -0.5119 ? -2.0114 ? -1.7841 ? 1.8059 ? -1.1468 ? 8 'X-RAY DIFFRACTION' ? refined 9.0900 -7.9151 -44.5662 1.1188 ? 0.1851 ? -0.0124 ? 1.1821 ? -0.2490 ? 1.6601 ? 2.0309 ? 1.6892 ? 2.0397 ? 2.0064 ? 2.0293 ? 2.0268 ? -0.7494 ? -0.0730 ? -3.1617 ? -1.1376 ? 1.6215 ? 2.5331 ? -0.0554 ? 0.2321 ? -0.7763 ? 9 'X-RAY DIFFRACTION' ? refined 5.5483 1.0027 -31.8321 1.0544 ? 0.3296 ? 0.0241 ? 1.2062 ? 0.0059 ? 0.9252 ? 2.1706 ? -6.1650 ? -4.8125 ? 9.9111 ? -0.7099 ? 2.1767 ? -0.6124 ? -2.1372 ? -1.3787 ? 0.0132 ? 0.8157 ? 0.2796 ? -0.7386 ? 0.8894 ? 0.1452 ? 10 'X-RAY DIFFRACTION' ? refined -4.0380 7.0909 -32.9725 0.7965 ? 0.2951 ? 0.1346 ? 1.0183 ? -0.2045 ? 1.3516 ? 1.9215 ? 2.8105 ? -3.3326 ? 5.5024 ? -2.0161 ? 7.1508 ? -0.5925 ? 0.7668 ? 1.9408 ? 0.6759 ? -1.5748 ? 1.8379 ? -0.6206 ? -2.0946 ? 1.5934 ? 11 'X-RAY DIFFRACTION' ? refined -0.1788 0.8761 -46.0604 1.1512 ? -0.0328 ? 0.0655 ? 0.8979 ? -0.0458 ? 1.3103 ? 6.0387 ? -2.1529 ? 3.3865 ? 2.0331 ? 4.7952 ? 7.5800 ? -0.5634 ? 1.0020 ? 0.8314 ? 0.1062 ? -0.7893 ? 2.1903 ? 2.3674 ? -0.5004 ? 0.7733 ? 12 'X-RAY DIFFRACTION' ? refined 13.4590 0.9385 -41.1713 1.0110 ? 0.2028 ? -0.0663 ? 1.3338 ? -0.1179 ? 0.7697 ? 8.0615 ? -1.5697 ? 0.9876 ? 6.8589 ? -1.2100 ? 2.0693 ? 0.1665 ? -0.0305 ? 0.1773 ? 0.0564 ? 0.0227 ? -0.8574 ? 1.1706 ? 2.2459 ? -0.2645 ? 13 'X-RAY DIFFRACTION' ? refined 12.3280 1.6725 -31.7710 0.7886 ? 0.4297 ? -0.0706 ? 1.9958 ? -0.0858 ? 1.1761 ? 3.8644 ? -3.7494 ? -0.6871 ? 2.0349 ? 0.8012 ? 6.7746 ? 0.0407 ? -1.8844 ? 0.8919 ? -0.3476 ? -0.0659 ? -2.4396 ? 1.2514 ? 2.1640 ? -0.1955 ? 14 'X-RAY DIFFRACTION' ? refined -0.1763 10.8983 -40.4568 0.8314 ? 0.0455 ? -0.1478 ? 0.9236 ? -0.0605 ? 1.3460 ? 9.7887 ? -2.9508 ? -3.4061 ? 2.1727 ? -3.5496 ? 8.1996 ? 0.5479 ? -0.1825 ? 3.7469 ? -0.7436 ? -0.4389 ? 0.0090 ? -0.9263 ? -0.4983 ? 0.4613 ? 15 'X-RAY DIFFRACTION' ? refined 11.6546 -6.4359 -2.4741 1.4689 ? 0.4835 ? 0.3693 ? 1.3769 ? -0.0159 ? 1.0758 ? 1.4398 ? 0.7601 ? 1.6452 ? 4.5270 ? 0.0352 ? 1.9419 ? 0.5202 ? -0.8730 ? -0.2683 ? -0.3497 ? -0.5767 ? -0.1997 ? 0.4138 ? 0.1473 ? 0.4442 ? 16 'X-RAY DIFFRACTION' ? refined 17.5828 6.8209 -14.5117 1.6925 ? -0.1910 ? -0.2745 ? 1.4227 ? -0.0370 ? 0.7976 ? 2.4559 ? 1.7690 ? -1.0016 ? 4.3972 ? 0.4019 ? 2.9274 ? -0.5654 ? 1.7173 ? 0.3688 ? -3.0408 ? 0.7547 ? 1.4431 ? -0.1548 ? 0.4570 ? -0.4812 ? 17 'X-RAY DIFFRACTION' ? refined 27.1928 7.3038 -10.0238 0.9920 ? 0.0364 ? 0.0082 ? 1.1878 ? -0.1220 ? 1.0482 ? 6.7405 ? 3.8186 ? -2.5943 ? 2.0308 ? -0.0495 ? 4.5212 ? 0.6894 ? 0.8242 ? -0.4307 ? -0.2584 ? -0.9273 ? -2.3995 ? -0.0793 ? 1.3325 ? 0.0327 ? 18 'X-RAY DIFFRACTION' ? refined 16.4171 4.1544 -0.7891 1.1332 ? 0.0544 ? -0.0041 ? 1.0155 ? -0.1214 ? 0.9260 ? 9.7974 ? 2.7812 ? 5.2044 ? 6.4234 ? 0.4296 ? 9.3693 ? 0.4077 ? 0.3655 ? -0.2557 ? -0.4358 ? 0.1603 ? -0.6912 ? 1.5654 ? 0.0828 ? -0.3350 ? 19 'X-RAY DIFFRACTION' ? refined 3.9683 -3.6517 -6.6284 1.2907 ? 0.0102 ? -0.1262 ? 1.3543 ? -0.0692 ? 0.7969 ? 6.6553 ? 0.2535 ? 0.8066 ? 9.3342 ? -6.2297 ? 5.6244 ? -0.6497 ? -1.1254 ? 0.0340 ? -0.3885 ? 2.2944 ? 1.3785 ? 2.5008 ? -1.9737 ? -1.6631 ? 20 'X-RAY DIFFRACTION' ? refined 8.4569 -2.5486 -15.4590 1.3510 ? 0.1774 ? -0.5498 ? 2.5427 ? -0.1812 ? 0.9780 ? 9.4119 ? 2.7032 ? -1.8264 ? 5.9495 ? 1.9703 ? 1.9837 ? -0.2894 ? -0.2828 ? 0.6149 ? -1.9849 ? -2.8614 ? -0.0822 ? 4.2111 ? 2.1372 ? 2.3502 ? 21 'X-RAY DIFFRACTION' ? refined 19.1058 12.2662 -6.8296 1.0711 ? 0.0330 ? -0.2177 ? 0.8399 ? 0.2417 ? 1.3415 ? 7.0103 ? -0.4786 ? 2.1573 ? 5.3007 ? 2.1668 ? 8.2350 ? -0.2008 ? 0.5854 ? -0.8889 ? -1.1075 ? 0.3768 ? 0.8572 ? -2.0225 ? 0.5062 ? 0.0453 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 5 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 6 through 9 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 10 through 13 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 14 through 17 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 18 through 21 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 22 through 26 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 27 through 30 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 4 ) ; 9 'X-RAY DIFFRACTION' 9 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 5 through 8 ) ; 10 'X-RAY DIFFRACTION' 10 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 9 through 12 ) ; 11 'X-RAY DIFFRACTION' 11 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 13 through 16 ) ; 12 'X-RAY DIFFRACTION' 12 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 17 through 21 ) ; 13 'X-RAY DIFFRACTION' 13 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 22 through 30 ) ; 14 'X-RAY DIFFRACTION' 14 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 31 through 34 ) ; 15 'X-RAY DIFFRACTION' 15 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 4 ) ; 16 'X-RAY DIFFRACTION' 16 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 5 through 9 ) ; 17 'X-RAY DIFFRACTION' 17 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 10 through 13 ) ; 18 'X-RAY DIFFRACTION' 18 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 14 through 19 ) ; 19 'X-RAY DIFFRACTION' 19 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 20 through 24 ) ; 20 'X-RAY DIFFRACTION' 20 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 25 through 28 ) ; 21 'X-RAY DIFFRACTION' 21 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 29 through 34 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487)' 4 # _pdbx_entry_details.entry_id 8FB3 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B U 1 ? "O5'" ? B U 1 "O5'" 2 1 Y 1 B U 1 ? "C5'" ? B U 1 "C5'" 3 1 Y 1 B U 1 ? "C4'" ? B U 1 "C4'" 4 1 Y 1 B U 1 ? "O4'" ? B U 1 "O4'" 5 1 Y 1 B U 1 ? "C3'" ? B U 1 "C3'" 6 1 Y 1 B U 1 ? "C2'" ? B U 1 "C2'" 7 1 Y 1 B U 1 ? "O2'" ? B U 1 "O2'" 8 1 Y 1 B U 1 ? "C1'" ? B U 1 "C1'" 9 1 Y 1 B U 1 ? N1 ? B U 1 N1 10 1 Y 1 B U 1 ? C2 ? B U 1 C2 11 1 Y 1 B U 1 ? O2 ? B U 1 O2 12 1 Y 1 B U 1 ? N3 ? B U 1 N3 13 1 Y 1 B U 1 ? C4 ? B U 1 C4 14 1 Y 1 B U 1 ? O4 ? B U 1 O4 15 1 Y 1 B U 1 ? C5 ? B U 1 C5 16 1 Y 1 B U 1 ? C6 ? B U 1 C6 17 1 Y 1 B A 22 ? "C5'" ? B A 22 "C5'" 18 1 Y 1 B A 22 ? "C4'" ? B A 22 "C4'" 19 1 Y 1 B A 22 ? "O4'" ? B A 22 "O4'" 20 1 Y 1 B A 22 ? "C3'" ? B A 22 "C3'" 21 1 Y 1 B A 22 ? "O3'" ? B A 22 "O3'" 22 1 Y 1 B A 22 ? "C2'" ? B A 22 "C2'" 23 1 Y 1 B A 22 ? "O2'" ? B A 22 "O2'" 24 1 Y 1 B A 22 ? "C1'" ? B A 22 "C1'" 25 1 Y 1 B A 22 ? N9 ? B A 22 N9 26 1 Y 1 B A 22 ? C8 ? B A 22 C8 27 1 Y 1 B A 22 ? N7 ? B A 22 N7 28 1 Y 1 B A 22 ? C5 ? B A 22 C5 29 1 Y 1 B A 22 ? C6 ? B A 22 C6 30 1 Y 1 B A 22 ? N6 ? B A 22 N6 31 1 Y 1 B A 22 ? N1 ? B A 22 N1 32 1 Y 1 B A 22 ? C2 ? B A 22 C2 33 1 Y 1 B A 22 ? N3 ? B A 22 N3 34 1 Y 1 B A 22 ? C4 ? B A 22 C4 35 1 Y 1 C A 24 ? P ? C A 24 P 36 1 Y 1 C A 24 ? OP1 ? C A 24 OP1 37 1 Y 1 C A 24 ? OP2 ? C A 24 OP2 38 1 Y 1 C A 24 ? "O5'" ? C A 24 "O5'" 39 1 Y 1 C A 24 ? "C5'" ? C A 24 "C5'" 40 1 Y 1 C A 24 ? "C4'" ? C A 24 "C4'" 41 1 Y 1 C A 24 ? "O4'" ? C A 24 "O4'" 42 1 Y 1 C A 24 ? "C3'" ? C A 24 "C3'" 43 1 Y 1 C A 24 ? "C2'" ? C A 24 "C2'" 44 1 Y 1 C A 24 ? "O2'" ? C A 24 "O2'" 45 1 Y 1 C A 24 ? "C1'" ? C A 24 "C1'" 46 1 Y 1 C A 24 ? N9 ? C A 24 N9 47 1 Y 1 C A 24 ? C8 ? C A 24 C8 48 1 Y 1 C A 24 ? N7 ? C A 24 N7 49 1 Y 1 C A 24 ? C5 ? C A 24 C5 50 1 Y 1 C A 24 ? C6 ? C A 24 C6 51 1 Y 1 C A 24 ? N6 ? C A 24 N6 52 1 Y 1 C A 24 ? N1 ? C A 24 N1 53 1 Y 1 C A 24 ? C2 ? C A 24 C2 54 1 Y 1 C A 24 ? N3 ? C A 24 N3 55 1 Y 1 C A 24 ? C4 ? C A 24 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B U 23 ? B U 23 2 1 Y 1 B A 24 ? B A 24 3 1 Y 1 B A 25 ? B A 25 4 1 Y 1 B A 26 ? B A 26 5 1 Y 1 C U 23 ? C U 23 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8FB3 'double helix' 8FB3 'a-form double helix' 8FB3 'parallel strands' 8FB3 'mismatched base pair' 8FB3 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 A A 22 1_555 -0.760 0.081 0.077 -6.550 1.793 -8.742 1 A_U1:A22_A A 1 ? A 22 ? 20 1 1 A G 2 1_555 A C 21 1_555 0.149 0.028 0.175 -7.554 -19.377 5.160 2 A_G2:C21_A A 2 ? A 21 ? 19 1 1 A U 3 1_555 A A 20 1_555 -0.235 -0.318 0.692 -1.868 -15.977 7.640 3 A_U3:A20_A A 3 ? A 20 ? 20 1 1 A G 4 1_555 A C 19 1_555 0.205 0.168 0.513 -5.679 -13.950 3.213 4 A_G4:C19_A A 4 ? A 19 ? 19 1 1 A G 5 1_555 A C 18 1_555 0.325 0.108 0.464 -7.804 -12.133 -2.301 5 A_G5:C18_A A 5 ? A 18 ? 19 1 1 A U 6 1_555 A A 29 1_555 -1.416 3.876 0.671 -18.308 -1.811 -78.015 6 A_U6:A29_A A 6 ? A 29 ? 23 3 1 A U 7 1_555 A A 30 1_555 -1.539 4.013 0.142 -17.131 -7.987 -77.604 7 A_U7:A30_A A 7 ? A 30 ? 23 3 1 A C 8 1_555 A A 12 1_555 0.189 1.273 -0.481 17.724 -3.459 -148.474 8 A_C8:A12_A A 8 ? A 12 ? 26 2 1 A G 9 1_555 A A 33 1_555 2.598 -3.939 0.894 24.337 -1.662 -70.809 9 A_G9:A33_A A 9 ? A 33 ? 10 6 1 A C 10 1_555 A G 34 1_555 -0.454 -0.141 0.379 11.101 -13.665 1.457 10 A_C10:G34_A A 10 ? A 34 ? 19 1 1 B G 2 1_555 B C 21 1_555 -0.674 -0.146 0.479 3.110 -24.283 3.474 11 B_G2:C21_B B 2 ? B 21 ? 19 1 1 B U 3 1_555 B A 20 1_555 -0.971 -0.186 0.366 -8.180 -15.023 -2.969 12 B_U3:A20_B B 3 ? B 20 ? 20 1 1 B G 4 1_555 B C 19 1_555 0.712 -0.033 0.686 2.933 -6.560 -0.480 13 B_G4:C19_B B 4 ? B 19 ? 19 1 1 B G 5 1_555 B C 18 1_555 0.154 -0.082 0.184 -1.401 -7.845 -4.312 14 B_G5:C18_B B 5 ? B 18 ? 19 1 1 B U 6 1_555 B A 29 1_555 -0.805 3.866 1.132 -17.025 -9.177 -68.012 15 B_U6:A29_B B 6 ? B 29 ? 23 3 1 B U 7 1_555 B A 30 1_555 -0.922 3.464 1.210 -15.636 -5.172 -79.442 16 B_U7:A30_B B 7 ? B 30 ? 23 3 1 B C 8 1_555 B A 12 1_555 -0.065 1.399 -0.200 14.329 -1.986 -160.025 17 B_C8:A12_B B 8 ? B 12 ? 26 2 1 B G 9 1_555 B A 33 1_555 3.543 -3.234 0.522 23.215 2.395 -68.986 18 B_G9:A33_B B 9 ? B 33 ? 10 6 1 B C 14 1_555 B G 34 1_555 -0.257 3.051 2.339 15.503 17.307 130.361 19 B_C14:G34_B B 14 ? B 34 ? ? ? 1 C U 1 1_555 C A 22 1_555 -1.471 0.203 -0.427 11.720 -7.684 -12.663 20 C_U1:A22_C C 1 ? C 22 ? 20 1 1 C G 2 1_555 C C 21 1_555 -0.224 -0.243 -0.097 -1.251 -24.798 4.806 21 C_G2:C21_C C 2 ? C 21 ? 19 1 1 C U 3 1_555 C A 20 1_555 -0.038 -0.366 0.597 -2.055 -8.055 8.386 22 C_U3:A20_C C 3 ? C 20 ? 20 1 1 C G 4 1_555 C C 19 1_555 0.511 -0.124 0.355 -5.583 -9.329 2.586 23 C_G4:C19_C C 4 ? C 19 ? 19 1 1 C G 5 1_555 C C 18 1_555 -0.349 -0.277 0.386 -2.796 -6.069 -0.262 24 C_G5:C18_C C 5 ? C 18 ? 19 1 1 C U 6 1_555 C A 29 1_555 -0.739 3.555 0.895 -28.679 -9.629 -70.943 25 C_U6:A29_C C 6 ? C 29 ? 23 3 1 C U 7 1_555 C A 30 1_555 -1.795 3.987 0.803 -12.539 -10.453 -77.523 26 C_U7:A30_C C 7 ? C 30 ? 23 3 1 C C 8 1_555 C A 12 1_555 0.328 1.576 -0.555 11.459 -13.444 -156.887 27 C_C8:A12_C C 8 ? C 12 ? 26 2 1 C G 9 1_555 C A 33 1_555 3.373 -3.981 -0.050 26.210 2.430 -62.244 28 C_G9:A33_C C 9 ? C 33 ? 10 6 1 C C 14 1_555 C G 34 1_555 -0.368 2.126 2.087 21.028 4.963 121.696 29 C_C14:G34_C C 14 ? C 34 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 A A 22 1_555 A G 2 1_555 A C 21 1_555 0.781 -1.708 3.225 -2.973 11.027 37.118 -3.794 -1.505 2.566 16.840 4.540 38.776 1 AA_U1G2:C21A22_AA A 1 ? A 22 ? A 2 ? A 21 ? 1 A G 2 1_555 A C 21 1_555 A U 3 1_555 A A 20 1_555 0.027 -1.282 2.986 -4.747 2.945 30.539 -2.902 -0.867 2.817 5.533 8.919 31.034 2 AA_G2U3:A20C21_AA A 2 ? A 21 ? A 3 ? A 20 ? 1 A U 3 1_555 A A 20 1_555 A G 4 1_555 A C 19 1_555 -0.241 -1.439 3.134 2.743 7.392 33.500 -3.483 0.797 2.736 12.608 -4.678 34.389 3 AA_U3G4:C19A20_AA A 3 ? A 20 ? A 4 ? A 19 ? 1 A G 4 1_555 A C 19 1_555 A G 5 1_555 A C 18 1_555 -0.229 -1.758 3.052 0.728 5.176 32.349 -3.912 0.518 2.740 9.215 -1.296 32.757 4 AA_G4G5:C18C19_AA A 4 ? A 19 ? A 5 ? A 18 ? 1 A G 5 1_555 A C 18 1_555 A U 6 1_555 A A 29 1_555 -6.697 -1.248 1.869 17.010 -6.463 10.099 -4.785 15.065 -4.167 -21.738 -57.216 20.790 5 AA_G5U6:A29C18_AA A 5 ? A 18 ? A 6 ? A 29 ? 1 A U 6 1_555 A A 29 1_555 A U 7 1_555 A A 30 1_555 0.624 -1.014 2.726 9.502 0.301 32.595 -1.780 0.241 2.784 0.522 -16.497 33.917 6 AA_U6U7:A30A29_AA A 6 ? A 29 ? A 7 ? A 30 ? 1 A U 7 1_555 A A 30 1_555 A C 8 1_555 A A 12 1_555 4.444 -3.292 4.957 2.845 26.484 105.370 -2.540 -2.698 4.399 16.481 -1.770 107.702 7 AA_U7C8:A12A30_AA A 7 ? A 30 ? A 8 ? A 12 ? 1 A C 8 1_555 A A 12 1_555 A G 9 1_555 A A 33 1_555 -2.155 -0.243 2.847 5.980 8.267 1.180 -8.309 17.063 -1.123 67.588 -48.892 10.271 8 AA_C8G9:A33A12_AA A 8 ? A 12 ? A 9 ? A 33 ? 1 B G 2 1_555 B C 21 1_555 B U 3 1_555 B A 20 1_555 -0.522 -1.618 3.300 -2.155 12.125 35.165 -4.048 0.550 2.644 19.350 3.440 37.195 9 BB_G2U3:A20C21_BB B 2 ? B 21 ? B 3 ? B 20 ? 1 B U 3 1_555 B A 20 1_555 B G 4 1_555 B C 19 1_555 0.941 -1.106 2.929 -0.735 2.782 37.627 -2.027 -1.539 2.825 4.306 1.138 37.733 10 BB_U3G4:C19A20_BB B 3 ? B 20 ? B 4 ? B 19 ? 1 B G 4 1_555 B C 19 1_555 B G 5 1_555 B C 18 1_555 -0.178 -1.903 3.226 3.486 6.205 29.582 -4.778 0.986 2.741 11.936 -6.705 30.407 11 BB_G4G5:C18C19_BB B 4 ? B 19 ? B 5 ? B 18 ? 1 B G 5 1_555 B C 18 1_555 B U 6 1_555 B A 29 1_555 -6.733 -1.940 1.628 12.691 -9.403 12.352 -6.167 18.569 -2.335 -31.079 -41.946 20.027 12 BB_G5U6:A29C18_BB B 5 ? B 18 ? B 6 ? B 29 ? 1 B U 6 1_555 B A 29 1_555 B U 7 1_555 B A 30 1_555 1.207 -1.100 2.977 4.695 4.015 39.402 -2.037 -1.274 2.974 5.911 -6.911 39.865 13 BB_U6U7:A30A29_BB B 6 ? B 29 ? B 7 ? B 30 ? 1 B U 7 1_555 B A 30 1_555 B C 8 1_555 B A 12 1_555 3.388 -3.224 5.204 0.131 21.677 106.133 -2.429 -2.096 4.705 13.470 -0.081 107.663 14 BB_U7C8:A12A30_BB B 7 ? B 30 ? B 8 ? B 12 ? 1 B C 8 1_555 B A 12 1_555 B G 9 1_555 B A 33 1_555 -2.391 -0.728 3.096 0.900 4.631 -7.808 -6.331 -12.915 3.256 -30.602 5.944 -9.120 15 BB_C8G9:A33A12_BB B 8 ? B 12 ? B 9 ? B 33 ? 1 C U 1 1_555 C A 22 1_555 C G 2 1_555 C C 21 1_555 1.241 -1.080 3.850 -3.483 11.143 36.721 -3.183 -2.367 3.271 17.162 5.364 38.471 16 CC_U1G2:C21A22_CC C 1 ? C 22 ? C 2 ? C 21 ? 1 C G 2 1_555 C C 21 1_555 C U 3 1_555 C A 20 1_555 -0.057 -0.793 3.289 -9.793 5.584 35.466 -1.983 -1.206 3.043 8.893 15.597 37.160 17 CC_G2U3:A20C21_CC C 2 ? C 21 ? C 3 ? C 20 ? 1 C U 3 1_555 C A 20 1_555 C G 4 1_555 C C 19 1_555 -0.392 -1.738 3.245 2.467 4.388 31.459 -3.928 1.143 2.944 8.029 -4.513 31.849 18 CC_U3G4:C19A20_CC C 3 ? C 20 ? C 4 ? C 19 ? 1 C G 4 1_555 C C 19 1_555 C G 5 1_555 C C 18 1_555 -0.027 -1.968 2.990 -0.706 4.708 27.970 -4.955 -0.087 2.630 9.652 1.447 28.364 19 CC_G4G5:C18C19_CC C 4 ? C 19 ? C 5 ? C 18 ? 1 C G 5 1_555 C C 18 1_555 C U 6 1_555 C A 29 1_555 -6.871 -1.267 1.540 21.387 -10.498 16.742 -3.493 11.731 -3.674 -24.408 -49.723 29.049 20 CC_G5U6:A29C18_CC C 5 ? C 18 ? C 6 ? C 29 ? 1 C U 6 1_555 C A 29 1_555 C U 7 1_555 C A 30 1_555 0.894 -0.777 3.094 -0.304 10.196 31.537 -2.929 -1.616 2.710 18.173 0.541 33.106 21 CC_U6U7:A30A29_CC C 6 ? C 29 ? C 7 ? C 30 ? 1 C U 7 1_555 C A 30 1_555 C C 8 1_555 C A 12 1_555 3.142 -2.753 5.254 -3.177 23.263 107.827 -2.132 -1.984 4.735 14.288 1.951 109.565 22 CC_U7C8:A12A30_CC C 7 ? C 30 ? C 8 ? C 12 ? 1 C C 8 1_555 C A 12 1_555 C G 9 1_555 C A 33 1_555 -1.977 -1.184 3.326 -4.982 9.790 1.760 -20.594 2.827 0.370 72.126 36.700 11.124 23 CC_C8G9:A33A12_CC C 8 ? C 12 ? C 9 ? C 33 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM063162 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PRF _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PRF _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 7-DEAZA-7-AMINOMETHYL-GUANINE PRF 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7rex _pdbx_initial_refinement_model.details 'Chain A' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Each RNA chain runs as a monomer based on gel filtration' #