data_8FD5 # _entry.id 8FD5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FD5 pdb_00008fd5 10.2210/pdb8fd5/pdb WWPDB D_1000270416 ? ? EMDB EMD-29002 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Nucleocapsid monomer structure from SARS-CoV-2' _pdbx_database_related.db_id EMD-29002 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FD5 _pdbx_database_status.recvd_initial_deposition_date 2022-12-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Casasanta, M.' 1 0000-0001-6614-9623 'Jonaid, G.M.' 2 0000-0002-5694-2262 'Kaylor, L.' 3 ? 'Luqiu, W.' 4 ? 'DiCecco, L.' 5 0000-0001-8420-1114 'Solares, M.' 6 0000-0001-8388-7011 'Berry, S.' 7 0000-0002-9537-312X 'Kelly, D.F.' 8 0000-0002-7341-7435 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary 'Microsc Microanal' ? ? 1435-8115 ? ? 29 ? 649 657 'Structural Insights of the SARS-CoV-2 Nucleocapsid Protein: Implications for the Inner-workings of Rapid Antigen Tests.' 2023 ? 10.1093/micmic/ozac036 37749713 ? ? ? ? ? ? ? ? ? UK ? ? 1 Nanoscale ? ? 2040-3372 ? ? 13 ? 7285 7293 'Microchip-based structure determination of low-molecular weight proteins using cryo-electron microscopy.' 2021 ? 10.1016/j.apsb.2020.04.009 33889923 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Casasanta, M.A.' 1 ? primary 'Jonaid, G.M.' 2 ? primary 'Kaylor, L.' 3 ? primary 'Luqiu, W.Y.' 4 ? primary 'DiCecco, L.A.' 5 ? primary 'Solares, M.J.' 6 ? primary 'Berry, S.' 7 ? primary 'Dearnaley, W.J.' 8 ? primary 'Kelly, D.F.' 9 ? 1 'Casasanta, M.A.' 10 ? 1 'Jonaid, G.M.' 11 ? 1 'Kaylor, L.' 12 ? 1 'Luqiu, W.Y.' 13 ? 1 'Solares, M.J.' 14 ? 1 'Schroen, M.L.' 15 ? 1 'Dearnaley, W.J.' 16 ? 1 'Wilson, J.' 17 ? 1 'Dukes, M.J.' 18 ? 1 'Kelly, D.F.' 19 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Nucleoprotein _entity.formula_weight 45689.645 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'N,Nucleocapsid protein,NC,Protein N' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSP DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQ LPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI GMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADL DDFSKQLQQSMSSADSTQA ; _entity_poly.pdbx_seq_one_letter_code_can ;MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSP DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQ LPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI GMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADL DDFSKQLQQSMSSADSTQA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ASP n 1 4 ASN n 1 5 GLY n 1 6 PRO n 1 7 GLN n 1 8 ASN n 1 9 GLN n 1 10 ARG n 1 11 ASN n 1 12 ALA n 1 13 PRO n 1 14 ARG n 1 15 ILE n 1 16 THR n 1 17 PHE n 1 18 GLY n 1 19 GLY n 1 20 PRO n 1 21 SER n 1 22 ASP n 1 23 SER n 1 24 THR n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 GLN n 1 29 ASN n 1 30 GLY n 1 31 GLU n 1 32 ARG n 1 33 SER n 1 34 GLY n 1 35 ALA n 1 36 ARG n 1 37 SER n 1 38 LYS n 1 39 GLN n 1 40 ARG n 1 41 ARG n 1 42 PRO n 1 43 GLN n 1 44 GLY n 1 45 LEU n 1 46 PRO n 1 47 ASN n 1 48 ASN n 1 49 THR n 1 50 ALA n 1 51 SER n 1 52 TRP n 1 53 PHE n 1 54 THR n 1 55 ALA n 1 56 LEU n 1 57 THR n 1 58 GLN n 1 59 HIS n 1 60 GLY n 1 61 LYS n 1 62 GLU n 1 63 ASP n 1 64 LEU n 1 65 LYS n 1 66 PHE n 1 67 PRO n 1 68 ARG n 1 69 GLY n 1 70 GLN n 1 71 GLY n 1 72 VAL n 1 73 PRO n 1 74 ILE n 1 75 ASN n 1 76 THR n 1 77 ASN n 1 78 SER n 1 79 SER n 1 80 PRO n 1 81 ASP n 1 82 ASP n 1 83 GLN n 1 84 ILE n 1 85 GLY n 1 86 TYR n 1 87 TYR n 1 88 ARG n 1 89 ARG n 1 90 ALA n 1 91 THR n 1 92 ARG n 1 93 ARG n 1 94 ILE n 1 95 ARG n 1 96 GLY n 1 97 GLY n 1 98 ASP n 1 99 GLY n 1 100 LYS n 1 101 MET n 1 102 LYS n 1 103 ASP n 1 104 LEU n 1 105 SER n 1 106 PRO n 1 107 ARG n 1 108 TRP n 1 109 TYR n 1 110 PHE n 1 111 TYR n 1 112 TYR n 1 113 LEU n 1 114 GLY n 1 115 THR n 1 116 GLY n 1 117 PRO n 1 118 GLU n 1 119 ALA n 1 120 GLY n 1 121 LEU n 1 122 PRO n 1 123 TYR n 1 124 GLY n 1 125 ALA n 1 126 ASN n 1 127 LYS n 1 128 ASP n 1 129 GLY n 1 130 ILE n 1 131 ILE n 1 132 TRP n 1 133 VAL n 1 134 ALA n 1 135 THR n 1 136 GLU n 1 137 GLY n 1 138 ALA n 1 139 LEU n 1 140 ASN n 1 141 THR n 1 142 PRO n 1 143 LYS n 1 144 ASP n 1 145 HIS n 1 146 ILE n 1 147 GLY n 1 148 THR n 1 149 ARG n 1 150 ASN n 1 151 PRO n 1 152 ALA n 1 153 ASN n 1 154 ASN n 1 155 ALA n 1 156 ALA n 1 157 ILE n 1 158 VAL n 1 159 LEU n 1 160 GLN n 1 161 LEU n 1 162 PRO n 1 163 GLN n 1 164 GLY n 1 165 THR n 1 166 THR n 1 167 LEU n 1 168 PRO n 1 169 LYS n 1 170 GLY n 1 171 PHE n 1 172 TYR n 1 173 ALA n 1 174 GLU n 1 175 GLY n 1 176 SER n 1 177 ARG n 1 178 GLY n 1 179 GLY n 1 180 SER n 1 181 GLN n 1 182 ALA n 1 183 SER n 1 184 SER n 1 185 ARG n 1 186 SER n 1 187 SER n 1 188 SER n 1 189 ARG n 1 190 SER n 1 191 ARG n 1 192 ASN n 1 193 SER n 1 194 SER n 1 195 ARG n 1 196 ASN n 1 197 SER n 1 198 THR n 1 199 PRO n 1 200 GLY n 1 201 SER n 1 202 SER n 1 203 ARG n 1 204 GLY n 1 205 THR n 1 206 SER n 1 207 PRO n 1 208 ALA n 1 209 ARG n 1 210 MET n 1 211 ALA n 1 212 GLY n 1 213 ASN n 1 214 GLY n 1 215 GLY n 1 216 ASP n 1 217 ALA n 1 218 ALA n 1 219 LEU n 1 220 ALA n 1 221 LEU n 1 222 LEU n 1 223 LEU n 1 224 LEU n 1 225 ASP n 1 226 ARG n 1 227 LEU n 1 228 ASN n 1 229 GLN n 1 230 LEU n 1 231 GLU n 1 232 SER n 1 233 LYS n 1 234 MET n 1 235 SER n 1 236 GLY n 1 237 LYS n 1 238 GLY n 1 239 GLN n 1 240 GLN n 1 241 GLN n 1 242 GLN n 1 243 GLY n 1 244 GLN n 1 245 THR n 1 246 VAL n 1 247 THR n 1 248 LYS n 1 249 LYS n 1 250 SER n 1 251 ALA n 1 252 ALA n 1 253 GLU n 1 254 ALA n 1 255 SER n 1 256 LYS n 1 257 LYS n 1 258 PRO n 1 259 ARG n 1 260 GLN n 1 261 LYS n 1 262 ARG n 1 263 THR n 1 264 ALA n 1 265 THR n 1 266 LYS n 1 267 ALA n 1 268 TYR n 1 269 ASN n 1 270 VAL n 1 271 THR n 1 272 GLN n 1 273 ALA n 1 274 PHE n 1 275 GLY n 1 276 ARG n 1 277 ARG n 1 278 GLY n 1 279 PRO n 1 280 GLU n 1 281 GLN n 1 282 THR n 1 283 GLN n 1 284 GLY n 1 285 ASN n 1 286 PHE n 1 287 GLY n 1 288 ASP n 1 289 GLN n 1 290 GLU n 1 291 LEU n 1 292 ILE n 1 293 ARG n 1 294 GLN n 1 295 GLY n 1 296 THR n 1 297 ASP n 1 298 TYR n 1 299 LYS n 1 300 HIS n 1 301 TRP n 1 302 PRO n 1 303 GLN n 1 304 ILE n 1 305 ALA n 1 306 GLN n 1 307 PHE n 1 308 ALA n 1 309 PRO n 1 310 SER n 1 311 ALA n 1 312 SER n 1 313 ALA n 1 314 PHE n 1 315 PHE n 1 316 GLY n 1 317 MET n 1 318 SER n 1 319 ARG n 1 320 ILE n 1 321 GLY n 1 322 MET n 1 323 GLU n 1 324 VAL n 1 325 THR n 1 326 PRO n 1 327 SER n 1 328 GLY n 1 329 THR n 1 330 TRP n 1 331 LEU n 1 332 THR n 1 333 TYR n 1 334 THR n 1 335 GLY n 1 336 ALA n 1 337 ILE n 1 338 LYS n 1 339 LEU n 1 340 ASP n 1 341 ASP n 1 342 LYS n 1 343 ASP n 1 344 PRO n 1 345 ASN n 1 346 PHE n 1 347 LYS n 1 348 ASP n 1 349 GLN n 1 350 VAL n 1 351 ILE n 1 352 LEU n 1 353 LEU n 1 354 ASN n 1 355 LYS n 1 356 HIS n 1 357 ILE n 1 358 ASP n 1 359 ALA n 1 360 TYR n 1 361 LYS n 1 362 THR n 1 363 PHE n 1 364 PRO n 1 365 PRO n 1 366 THR n 1 367 GLU n 1 368 PRO n 1 369 LYS n 1 370 LYS n 1 371 ASP n 1 372 LYS n 1 373 LYS n 1 374 LYS n 1 375 LYS n 1 376 ALA n 1 377 ASP n 1 378 GLU n 1 379 THR n 1 380 GLN n 1 381 ALA n 1 382 LEU n 1 383 PRO n 1 384 GLN n 1 385 ARG n 1 386 GLN n 1 387 LYS n 1 388 LYS n 1 389 GLN n 1 390 GLN n 1 391 THR n 1 392 VAL n 1 393 THR n 1 394 LEU n 1 395 LEU n 1 396 PRO n 1 397 ALA n 1 398 ALA n 1 399 ASP n 1 400 LEU n 1 401 ASP n 1 402 ASP n 1 403 PHE n 1 404 SER n 1 405 LYS n 1 406 GLN n 1 407 LEU n 1 408 GLN n 1 409 GLN n 1 410 SER n 1 411 MET n 1 412 SER n 1 413 SER n 1 414 ALA n 1 415 ASP n 1 416 SER n 1 417 THR n 1 418 GLN n 1 419 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 419 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NCAP_SARS2 _struct_ref.pdbx_db_accession P0DTC9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSP DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQ LPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI GMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADL DDFSKQLQQSMSSADSTQA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8FD5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 419 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0DTC9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 419 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 419 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FD5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8FD5 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 3276 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.107 ? 4416 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 46.831 ? 456 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.057 ? 457 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 599 ? f_plane_restr ? ? # _struct.entry_id 8FD5 _struct.title 'Nucleocapsid monomer structure from SARS-CoV-2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FD5 _struct_keywords.text 'SARS-CoV-2, N protein, COVID-19, RNA binding protein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 100 ? LEU A 104 ? LYS A 100 LEU A 104 5 ? 5 HELX_P HELX_P2 AA2 LEU A 219 ? MET A 234 ? LEU A 219 MET A 234 1 ? 16 HELX_P HELX_P3 AA3 ALA A 252 ? LYS A 257 ? ALA A 252 LYS A 257 5 ? 6 HELX_P HELX_P4 AA4 PRO A 258 ? ARG A 262 ? PRO A 258 ARG A 262 5 ? 5 HELX_P HELX_P5 AA5 ASN A 269 ? PHE A 274 ? ASN A 269 PHE A 274 1 ? 6 HELX_P HELX_P6 AA6 ASP A 288 ? GLY A 295 ? ASP A 288 GLY A 295 1 ? 8 HELX_P HELX_P7 AA7 HIS A 300 ? ALA A 305 ? HIS A 300 ALA A 305 1 ? 6 HELX_P HELX_P8 AA8 SER A 310 ? PHE A 315 ? SER A 310 PHE A 315 1 ? 6 HELX_P HELX_P9 AA9 ASN A 345 ? ILE A 357 ? ASN A 345 ILE A 357 1 ? 13 HELX_P HELX_P10 AB1 ASP A 358 ? PHE A 363 ? ASP A 358 PHE A 363 5 ? 6 HELX_P HELX_P11 AB2 ALA A 398 ? SER A 416 ? ALA A 398 SER A 416 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 56 ? THR A 57 ? LEU A 56 THR A 57 AA1 2 ARG A 107 ? TYR A 112 ? ARG A 107 TYR A 112 AA1 3 GLY A 85 ? ARG A 89 ? GLY A 85 ARG A 89 AA1 4 GLY A 129 ? ILE A 130 ? GLY A 129 ILE A 130 AA2 1 GLY A 321 ? GLU A 323 ? GLY A 321 GLU A 323 AA2 2 TRP A 330 ? THR A 332 ? TRP A 330 THR A 332 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 56 ? N LEU A 56 O TRP A 108 ? O TRP A 108 AA1 2 3 O TYR A 109 ? O TYR A 109 N ARG A 88 ? N ARG A 88 AA1 3 4 N ARG A 89 ? N ARG A 89 O GLY A 129 ? O GLY A 129 AA2 1 2 N GLU A 323 ? N GLU A 323 O TRP A 330 ? O TRP A 330 # _atom_sites.entry_id 8FD5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 MET 101 101 101 MET MET A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 TRP 132 132 132 TRP TRP A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 VAL 158 158 158 VAL VAL A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 GLN 160 160 160 GLN GLN A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 PRO 162 162 162 PRO PRO A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 PRO 168 168 168 PRO PRO A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 PHE 171 171 171 PHE PHE A . n A 1 172 TYR 172 172 172 TYR TYR A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 GLN 181 181 181 GLN GLN A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 ARG 189 189 189 ARG ARG A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 ASN 192 192 192 ASN ASN A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 PRO 199 199 199 PRO PRO A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 SER 202 202 202 SER SER A . n A 1 203 ARG 203 203 203 ARG ARG A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 SER 206 206 206 SER SER A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 MET 210 210 210 MET MET A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 ASP 225 225 225 ASP ASP A . n A 1 226 ARG 226 226 226 ARG ARG A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 GLN 229 229 229 GLN GLN A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 GLU 231 231 231 GLU GLU A . n A 1 232 SER 232 232 232 SER SER A . n A 1 233 LYS 233 233 233 LYS LYS A . n A 1 234 MET 234 234 234 MET MET A . n A 1 235 SER 235 235 235 SER SER A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 GLN 239 239 239 GLN GLN A . n A 1 240 GLN 240 240 240 GLN GLN A . n A 1 241 GLN 241 241 241 GLN GLN A . n A 1 242 GLN 242 242 242 GLN GLN A . n A 1 243 GLY 243 243 243 GLY GLY A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 THR 245 245 245 THR THR A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 THR 247 247 247 THR THR A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 LYS 249 249 249 LYS LYS A . n A 1 250 SER 250 250 250 SER SER A . n A 1 251 ALA 251 251 251 ALA ALA A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 GLU 253 253 253 GLU GLU A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 LYS 256 256 256 LYS LYS A . n A 1 257 LYS 257 257 257 LYS LYS A . n A 1 258 PRO 258 258 258 PRO PRO A . n A 1 259 ARG 259 259 259 ARG ARG A . n A 1 260 GLN 260 260 260 GLN GLN A . n A 1 261 LYS 261 261 261 LYS LYS A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 THR 263 263 263 THR THR A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 THR 265 265 265 THR THR A . n A 1 266 LYS 266 266 266 LYS LYS A . n A 1 267 ALA 267 267 267 ALA ALA A . n A 1 268 TYR 268 268 268 TYR TYR A . n A 1 269 ASN 269 269 269 ASN ASN A . n A 1 270 VAL 270 270 270 VAL VAL A . n A 1 271 THR 271 271 271 THR THR A . n A 1 272 GLN 272 272 272 GLN GLN A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 PHE 274 274 274 PHE PHE A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 ARG 276 276 276 ARG ARG A . n A 1 277 ARG 277 277 277 ARG ARG A . n A 1 278 GLY 278 278 278 GLY GLY A . n A 1 279 PRO 279 279 279 PRO PRO A . n A 1 280 GLU 280 280 280 GLU GLU A . n A 1 281 GLN 281 281 281 GLN GLN A . n A 1 282 THR 282 282 282 THR THR A . n A 1 283 GLN 283 283 283 GLN GLN A . n A 1 284 GLY 284 284 284 GLY GLY A . n A 1 285 ASN 285 285 285 ASN ASN A . n A 1 286 PHE 286 286 286 PHE PHE A . n A 1 287 GLY 287 287 287 GLY GLY A . n A 1 288 ASP 288 288 288 ASP ASP A . n A 1 289 GLN 289 289 289 GLN GLN A . n A 1 290 GLU 290 290 290 GLU GLU A . n A 1 291 LEU 291 291 291 LEU LEU A . n A 1 292 ILE 292 292 292 ILE ILE A . n A 1 293 ARG 293 293 293 ARG ARG A . n A 1 294 GLN 294 294 294 GLN GLN A . n A 1 295 GLY 295 295 295 GLY GLY A . n A 1 296 THR 296 296 296 THR THR A . n A 1 297 ASP 297 297 297 ASP ASP A . n A 1 298 TYR 298 298 298 TYR TYR A . n A 1 299 LYS 299 299 299 LYS LYS A . n A 1 300 HIS 300 300 300 HIS HIS A . n A 1 301 TRP 301 301 301 TRP TRP A . n A 1 302 PRO 302 302 302 PRO PRO A . n A 1 303 GLN 303 303 303 GLN GLN A . n A 1 304 ILE 304 304 304 ILE ILE A . n A 1 305 ALA 305 305 305 ALA ALA A . n A 1 306 GLN 306 306 306 GLN GLN A . n A 1 307 PHE 307 307 307 PHE PHE A . n A 1 308 ALA 308 308 308 ALA ALA A . n A 1 309 PRO 309 309 309 PRO PRO A . n A 1 310 SER 310 310 310 SER SER A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 SER 312 312 312 SER SER A . n A 1 313 ALA 313 313 313 ALA ALA A . n A 1 314 PHE 314 314 314 PHE PHE A . n A 1 315 PHE 315 315 315 PHE PHE A . n A 1 316 GLY 316 316 316 GLY GLY A . n A 1 317 MET 317 317 317 MET MET A . n A 1 318 SER 318 318 318 SER SER A . n A 1 319 ARG 319 319 319 ARG ARG A . n A 1 320 ILE 320 320 320 ILE ILE A . n A 1 321 GLY 321 321 321 GLY GLY A . n A 1 322 MET 322 322 322 MET MET A . n A 1 323 GLU 323 323 323 GLU GLU A . n A 1 324 VAL 324 324 324 VAL VAL A . n A 1 325 THR 325 325 325 THR THR A . n A 1 326 PRO 326 326 326 PRO PRO A . n A 1 327 SER 327 327 327 SER SER A . n A 1 328 GLY 328 328 328 GLY GLY A . n A 1 329 THR 329 329 329 THR THR A . n A 1 330 TRP 330 330 330 TRP TRP A . n A 1 331 LEU 331 331 331 LEU LEU A . n A 1 332 THR 332 332 332 THR THR A . n A 1 333 TYR 333 333 333 TYR TYR A . n A 1 334 THR 334 334 334 THR THR A . n A 1 335 GLY 335 335 335 GLY GLY A . n A 1 336 ALA 336 336 336 ALA ALA A . n A 1 337 ILE 337 337 337 ILE ILE A . n A 1 338 LYS 338 338 338 LYS LYS A . n A 1 339 LEU 339 339 339 LEU LEU A . n A 1 340 ASP 340 340 340 ASP ASP A . n A 1 341 ASP 341 341 341 ASP ASP A . n A 1 342 LYS 342 342 342 LYS LYS A . n A 1 343 ASP 343 343 343 ASP ASP A . n A 1 344 PRO 344 344 344 PRO PRO A . n A 1 345 ASN 345 345 345 ASN ASN A . n A 1 346 PHE 346 346 346 PHE PHE A . n A 1 347 LYS 347 347 347 LYS LYS A . n A 1 348 ASP 348 348 348 ASP ASP A . n A 1 349 GLN 349 349 349 GLN GLN A . n A 1 350 VAL 350 350 350 VAL VAL A . n A 1 351 ILE 351 351 351 ILE ILE A . n A 1 352 LEU 352 352 352 LEU LEU A . n A 1 353 LEU 353 353 353 LEU LEU A . n A 1 354 ASN 354 354 354 ASN ASN A . n A 1 355 LYS 355 355 355 LYS LYS A . n A 1 356 HIS 356 356 356 HIS HIS A . n A 1 357 ILE 357 357 357 ILE ILE A . n A 1 358 ASP 358 358 358 ASP ASP A . n A 1 359 ALA 359 359 359 ALA ALA A . n A 1 360 TYR 360 360 360 TYR TYR A . n A 1 361 LYS 361 361 361 LYS LYS A . n A 1 362 THR 362 362 362 THR THR A . n A 1 363 PHE 363 363 363 PHE PHE A . n A 1 364 PRO 364 364 364 PRO PRO A . n A 1 365 PRO 365 365 365 PRO PRO A . n A 1 366 THR 366 366 366 THR THR A . n A 1 367 GLU 367 367 367 GLU GLU A . n A 1 368 PRO 368 368 368 PRO PRO A . n A 1 369 LYS 369 369 369 LYS LYS A . n A 1 370 LYS 370 370 370 LYS LYS A . n A 1 371 ASP 371 371 371 ASP ASP A . n A 1 372 LYS 372 372 372 LYS LYS A . n A 1 373 LYS 373 373 373 LYS LYS A . n A 1 374 LYS 374 374 374 LYS LYS A . n A 1 375 LYS 375 375 375 LYS LYS A . n A 1 376 ALA 376 376 376 ALA ALA A . n A 1 377 ASP 377 377 377 ASP ASP A . n A 1 378 GLU 378 378 378 GLU GLU A . n A 1 379 THR 379 379 379 THR THR A . n A 1 380 GLN 380 380 380 GLN GLN A . n A 1 381 ALA 381 381 381 ALA ALA A . n A 1 382 LEU 382 382 382 LEU LEU A . n A 1 383 PRO 383 383 383 PRO PRO A . n A 1 384 GLN 384 384 384 GLN GLN A . n A 1 385 ARG 385 385 385 ARG ARG A . n A 1 386 GLN 386 386 386 GLN GLN A . n A 1 387 LYS 387 387 387 LYS LYS A . n A 1 388 LYS 388 388 388 LYS LYS A . n A 1 389 GLN 389 389 389 GLN GLN A . n A 1 390 GLN 390 390 390 GLN GLN A . n A 1 391 THR 391 391 391 THR THR A . n A 1 392 VAL 392 392 392 VAL VAL A . n A 1 393 THR 393 393 393 THR THR A . n A 1 394 LEU 394 394 394 LEU LEU A . n A 1 395 LEU 395 395 395 LEU LEU A . n A 1 396 PRO 396 396 396 PRO PRO A . n A 1 397 ALA 397 397 397 ALA ALA A . n A 1 398 ALA 398 398 398 ALA ALA A . n A 1 399 ASP 399 399 399 ASP ASP A . n A 1 400 LEU 400 400 400 LEU LEU A . n A 1 401 ASP 401 401 401 ASP ASP A . n A 1 402 ASP 402 402 402 ASP ASP A . n A 1 403 PHE 403 403 403 PHE PHE A . n A 1 404 SER 404 404 404 SER SER A . n A 1 405 LYS 405 405 405 LYS LYS A . n A 1 406 GLN 406 406 406 GLN GLN A . n A 1 407 LEU 407 407 407 LEU LEU A . n A 1 408 GLN 408 408 408 GLN GLN A . n A 1 409 GLN 409 409 409 GLN GLN A . n A 1 410 SER 410 410 410 SER SER A . n A 1 411 MET 411 411 411 MET MET A . n A 1 412 SER 412 412 412 SER SER A . n A 1 413 SER 413 413 413 SER SER A . n A 1 414 ALA 414 414 414 ALA ALA A . n A 1 415 ASP 415 415 415 ASP ASP A . n A 1 416 SER 416 416 416 SER SER A . n A 1 417 THR 417 417 417 THR THR A . n A 1 418 GLN 418 418 418 GLN GLN A . n A 1 419 ALA 419 419 419 ALA ALA A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email debkelly@psu.edu _pdbx_contact_author.name_first Deb _pdbx_contact_author.name_last Kelly _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7341-7435 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-01-11 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation.year' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.17.1_3660: _software.pdbx_ordinal 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8FD5 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 100 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_reconstruction.entry_id 8FD5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.57 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 20000 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20 mM Tris (pH 7.5), 150 mM NaCl, 10 mM MgCl2, 10 mM CaCl2' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'A chain contains the full-length N protein' _em_entity_assembly.details ;Residues 1-49 were fit into the map separately from residues 50 - 419. The 2 fragments were fit as individual rigid bodies, then refined and rebuilt. There is a missing peptide linkage between residues 49 and 50. ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 8FD5 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size 6 _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 30 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8FD5 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS TALOS F200C' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 5000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material 'SILICON NITRIDE' _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type Homemade _em_sample_support.details 'Protein samples were added to the Ni-NTA-coated microchips and incubated for 1 minute at room temperature prior to vitrification.' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8FD5 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ;A Mark III Vitrobot was used to plunge samples into liquid ethane, operating at room temperature and 100% humidity with 3 - 4 seconds blot time ; # _em_experiment.entry_id 8FD5 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8FD5 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 10 ? ? CZ A ARG 10 ? ? NH1 A ARG 10 ? ? 117.04 120.30 -3.26 0.50 N 2 1 NE A ARG 149 ? ? CZ A ARG 149 ? ? NH1 A ARG 149 ? ? 117.06 120.30 -3.24 0.50 N 3 1 NE A ARG 149 ? ? CZ A ARG 149 ? ? NH2 A ARG 149 ? ? 123.46 120.30 3.16 0.50 N 4 1 NE A ARG 203 ? ? CZ A ARG 203 ? ? NH2 A ARG 203 ? ? 123.30 120.30 3.00 0.50 N 5 1 NE A ARG 226 ? ? CZ A ARG 226 ? ? NH2 A ARG 226 ? ? 124.40 120.30 4.10 0.50 N 6 1 NE A ARG 259 ? ? CZ A ARG 259 ? ? NH2 A ARG 259 ? ? 124.03 120.30 3.73 0.50 N 7 1 NE A ARG 262 ? ? CZ A ARG 262 ? ? NH2 A ARG 262 ? ? 124.33 120.30 4.03 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 20 ? ? -75.59 -167.12 2 1 THR A 49 ? ? -104.10 -134.46 3 1 LYS A 61 ? ? -141.83 10.32 4 1 PRO A 67 ? ? -53.14 173.39 5 1 PRO A 117 ? ? -56.24 172.86 6 1 PRO A 162 ? ? -88.47 48.98 7 1 ALA A 173 ? ? -57.50 175.92 8 1 LEU A 219 ? ? 55.01 -137.79 9 1 ALA A 220 ? ? 41.11 -123.42 10 1 TYR A 298 ? ? -34.10 121.56 11 1 PRO A 326 ? ? -63.84 0.24 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 88 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.078 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'DIRECT ELECTRON DE-12 (4k x 3k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 10 _em_image_recording.num_real_images 200 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 20000 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? RELION ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? PHENIX ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION ? CLASSIFICATION ? 11 1 ? ? RELION ? RECONSTRUCTION ? 12 1 ? ? RELION ? 'MODEL REFINEMENT' ? 13 ? 1 ? ISOLDE ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 0.1 _em_specimen.details 'Sample was enriched using Ni-NTA coated silicon nitride microchips' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01CA193578 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01CA227261 2 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01CA219700 3 #