data_8HED # _entry.id 8HED # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8HED pdb_00008hed 10.2210/pdb8hed/pdb WWPDB D_1300033180 ? ? EMDB EMD-34688 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'To be published' _pdbx_database_related.db_id EMD-34688 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8HED _pdbx_database_status.recvd_initial_deposition_date 2022-11-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guo, H.' 1 0000-0001-5213-9600 'Gao, Y.' 2 0000-0002-0364-6427 'Lu, Y.' 3 0000-0001-5169-1540 'Yang, H.' 4 0000-0002-1875-3268 'Ji, X.' 5 0000-0002-0801-8825 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_id_ASTM BBRCA9 _citation.journal_id_CSD 0146 _citation.journal_id_ISSN 1090-2104 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 660 _citation.language ? _citation.page_first 43 _citation.page_last 49 _citation.title 'Mechanism of an RBM-targeted rabbit monoclonal antibody 9H1 neutralizing SARS-CoV-2.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2023.04.002 _citation.pdbx_database_id_PubMed 37062240 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chu, X.' 1 ? primary 'Ding, X.' 2 ? primary 'Yang, Y.' 3 ? primary 'Lu, Y.' 4 ? primary 'Li, T.' 5 ? primary 'Gao, Y.' 6 ? primary 'Zheng, L.' 7 ? primary 'Xiao, H.' 8 ? primary 'Yang, T.' 9 ? primary 'Cheng, H.' 10 ? primary 'Huang, H.' 11 ? primary 'Liu, Y.' 12 ? primary 'Lou, Y.' 13 ? primary 'Wu, C.' 14 ? primary 'Chen, Y.' 15 ? primary 'Yang, H.' 16 ? primary 'Ji, X.' 17 ? primary 'Guo, H.' 18 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8HED _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8HED _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 22446.193 1 ? ? RBD ? 2 polymer man 'rabbit antibody 9H1 light chain' 11654.840 1 ? ? ? ? 3 polymer man 'rabbit antibody 9H1 heavy chain' 12556.056 1 ? ? ? ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 5 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQI APGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; ;NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQI APGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; B ? 2 'polypeptide(L)' no no ;QVLTQTPSSVSAAVGGTVTINCQASEDIYDNLVWYQQKPGQPPKLLIYDASTLAFGVSSRFRGSGSGTHFTLTMRDVQCD DAATYYCQGEFSCSSGDCTAFGGGTEVVVK ; ;QVLTQTPSSVSAAVGGTVTINCQASEDIYDNLVWYQQKPGQPPKLLIYDASTLAFGVSSRFRGSGSGTHFTLTMRDVQCD DAATYYCQGEFSCSSGDCTAFGGGTEVVVK ; F ? 3 'polypeptide(L)' no no ;QSVEESGGRLVTPGTPLTLTCTVSGFSLSRYAMSWVRQAPGKGLEWIGIIVDSGHTAYASWAKGRFTISRTSTTVDLKMT SLTTEDTATYFCARETGGGAFYVFEFWGPGTVVTVSS ; ;QSVEESGGRLVTPGTPLTLTCTVSGFSLSRYAMSWVRQAPGKGLEWIGIIVDSGHTAYASWAKGRFTISRTSTTVDLKMT SLTTEDTATYFCARETGGGAFYVFEFWGPGTVVTVSS ; G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 ILE n 1 3 THR n 1 4 ASN n 1 5 LEU n 1 6 CYS n 1 7 PRO n 1 8 PHE n 1 9 GLY n 1 10 GLU n 1 11 VAL n 1 12 PHE n 1 13 ASN n 1 14 ALA n 1 15 THR n 1 16 ARG n 1 17 PHE n 1 18 ALA n 1 19 SER n 1 20 VAL n 1 21 TYR n 1 22 ALA n 1 23 TRP n 1 24 ASN n 1 25 ARG n 1 26 LYS n 1 27 ARG n 1 28 ILE n 1 29 SER n 1 30 ASN n 1 31 CYS n 1 32 VAL n 1 33 ALA n 1 34 ASP n 1 35 TYR n 1 36 SER n 1 37 VAL n 1 38 LEU n 1 39 TYR n 1 40 ASN n 1 41 SER n 1 42 ALA n 1 43 SER n 1 44 PHE n 1 45 SER n 1 46 THR n 1 47 PHE n 1 48 LYS n 1 49 CYS n 1 50 TYR n 1 51 GLY n 1 52 VAL n 1 53 SER n 1 54 PRO n 1 55 THR n 1 56 LYS n 1 57 LEU n 1 58 ASN n 1 59 ASP n 1 60 LEU n 1 61 CYS n 1 62 PHE n 1 63 THR n 1 64 ASN n 1 65 VAL n 1 66 TYR n 1 67 ALA n 1 68 ASP n 1 69 SER n 1 70 PHE n 1 71 VAL n 1 72 ILE n 1 73 ARG n 1 74 GLY n 1 75 ASP n 1 76 GLU n 1 77 VAL n 1 78 ARG n 1 79 GLN n 1 80 ILE n 1 81 ALA n 1 82 PRO n 1 83 GLY n 1 84 GLN n 1 85 THR n 1 86 GLY n 1 87 LYS n 1 88 ILE n 1 89 ALA n 1 90 ASP n 1 91 TYR n 1 92 ASN n 1 93 TYR n 1 94 LYS n 1 95 LEU n 1 96 PRO n 1 97 ASP n 1 98 ASP n 1 99 PHE n 1 100 THR n 1 101 GLY n 1 102 CYS n 1 103 VAL n 1 104 ILE n 1 105 ALA n 1 106 TRP n 1 107 ASN n 1 108 SER n 1 109 ASN n 1 110 ASN n 1 111 LEU n 1 112 ASP n 1 113 SER n 1 114 LYS n 1 115 VAL n 1 116 GLY n 1 117 GLY n 1 118 ASN n 1 119 TYR n 1 120 ASN n 1 121 TYR n 1 122 LEU n 1 123 TYR n 1 124 ARG n 1 125 LEU n 1 126 PHE n 1 127 ARG n 1 128 LYS n 1 129 SER n 1 130 ASN n 1 131 LEU n 1 132 LYS n 1 133 PRO n 1 134 PHE n 1 135 GLU n 1 136 ARG n 1 137 ASP n 1 138 ILE n 1 139 SER n 1 140 THR n 1 141 GLU n 1 142 ILE n 1 143 TYR n 1 144 GLN n 1 145 ALA n 1 146 GLY n 1 147 SER n 1 148 THR n 1 149 PRO n 1 150 CYS n 1 151 ASN n 1 152 GLY n 1 153 VAL n 1 154 GLU n 1 155 GLY n 1 156 PHE n 1 157 ASN n 1 158 CYS n 1 159 TYR n 1 160 PHE n 1 161 PRO n 1 162 LEU n 1 163 GLN n 1 164 SER n 1 165 TYR n 1 166 GLY n 1 167 PHE n 1 168 GLN n 1 169 PRO n 1 170 THR n 1 171 ASN n 1 172 GLY n 1 173 VAL n 1 174 GLY n 1 175 TYR n 1 176 GLN n 1 177 PRO n 1 178 TYR n 1 179 ARG n 1 180 VAL n 1 181 VAL n 1 182 VAL n 1 183 LEU n 1 184 SER n 1 185 PHE n 1 186 GLU n 1 187 LEU n 1 188 LEU n 1 189 HIS n 1 190 ALA n 1 191 PRO n 1 192 ALA n 1 193 THR n 1 194 VAL n 1 195 CYS n 1 196 GLY n 1 197 PRO n 1 198 LYS n 1 199 LYS n 1 200 SER n 2 1 GLN n 2 2 VAL n 2 3 LEU n 2 4 THR n 2 5 GLN n 2 6 THR n 2 7 PRO n 2 8 SER n 2 9 SER n 2 10 VAL n 2 11 SER n 2 12 ALA n 2 13 ALA n 2 14 VAL n 2 15 GLY n 2 16 GLY n 2 17 THR n 2 18 VAL n 2 19 THR n 2 20 ILE n 2 21 ASN n 2 22 CYS n 2 23 GLN n 2 24 ALA n 2 25 SER n 2 26 GLU n 2 27 ASP n 2 28 ILE n 2 29 TYR n 2 30 ASP n 2 31 ASN n 2 32 LEU n 2 33 VAL n 2 34 TRP n 2 35 TYR n 2 36 GLN n 2 37 GLN n 2 38 LYS n 2 39 PRO n 2 40 GLY n 2 41 GLN n 2 42 PRO n 2 43 PRO n 2 44 LYS n 2 45 LEU n 2 46 LEU n 2 47 ILE n 2 48 TYR n 2 49 ASP n 2 50 ALA n 2 51 SER n 2 52 THR n 2 53 LEU n 2 54 ALA n 2 55 PHE n 2 56 GLY n 2 57 VAL n 2 58 SER n 2 59 SER n 2 60 ARG n 2 61 PHE n 2 62 ARG n 2 63 GLY n 2 64 SER n 2 65 GLY n 2 66 SER n 2 67 GLY n 2 68 THR n 2 69 HIS n 2 70 PHE n 2 71 THR n 2 72 LEU n 2 73 THR n 2 74 MET n 2 75 ARG n 2 76 ASP n 2 77 VAL n 2 78 GLN n 2 79 CYS n 2 80 ASP n 2 81 ASP n 2 82 ALA n 2 83 ALA n 2 84 THR n 2 85 TYR n 2 86 TYR n 2 87 CYS n 2 88 GLN n 2 89 GLY n 2 90 GLU n 2 91 PHE n 2 92 SER n 2 93 CYS n 2 94 SER n 2 95 SER n 2 96 GLY n 2 97 ASP n 2 98 CYS n 2 99 THR n 2 100 ALA n 2 101 PHE n 2 102 GLY n 2 103 GLY n 2 104 GLY n 2 105 THR n 2 106 GLU n 2 107 VAL n 2 108 VAL n 2 109 VAL n 2 110 LYS n 3 1 GLN n 3 2 SER n 3 3 VAL n 3 4 GLU n 3 5 GLU n 3 6 SER n 3 7 GLY n 3 8 GLY n 3 9 ARG n 3 10 LEU n 3 11 VAL n 3 12 THR n 3 13 PRO n 3 14 GLY n 3 15 THR n 3 16 PRO n 3 17 LEU n 3 18 THR n 3 19 LEU n 3 20 THR n 3 21 CYS n 3 22 THR n 3 23 VAL n 3 24 SER n 3 25 GLY n 3 26 PHE n 3 27 SER n 3 28 LEU n 3 29 SER n 3 30 ARG n 3 31 TYR n 3 32 ALA n 3 33 MET n 3 34 SER n 3 35 TRP n 3 36 VAL n 3 37 ARG n 3 38 GLN n 3 39 ALA n 3 40 PRO n 3 41 GLY n 3 42 LYS n 3 43 GLY n 3 44 LEU n 3 45 GLU n 3 46 TRP n 3 47 ILE n 3 48 GLY n 3 49 ILE n 3 50 ILE n 3 51 VAL n 3 52 ASP n 3 53 SER n 3 54 GLY n 3 55 HIS n 3 56 THR n 3 57 ALA n 3 58 TYR n 3 59 ALA n 3 60 SER n 3 61 TRP n 3 62 ALA n 3 63 LYS n 3 64 GLY n 3 65 ARG n 3 66 PHE n 3 67 THR n 3 68 ILE n 3 69 SER n 3 70 ARG n 3 71 THR n 3 72 SER n 3 73 THR n 3 74 THR n 3 75 VAL n 3 76 ASP n 3 77 LEU n 3 78 LYS n 3 79 MET n 3 80 THR n 3 81 SER n 3 82 LEU n 3 83 THR n 3 84 THR n 3 85 GLU n 3 86 ASP n 3 87 THR n 3 88 ALA n 3 89 THR n 3 90 TYR n 3 91 PHE n 3 92 CYS n 3 93 ALA n 3 94 ARG n 3 95 GLU n 3 96 THR n 3 97 GLY n 3 98 GLY n 3 99 GLY n 3 100 ALA n 3 101 PHE n 3 102 TYR n 3 103 VAL n 3 104 PHE n 3 105 GLU n 3 106 PHE n 3 107 TRP n 3 108 GLY n 3 109 PRO n 3 110 GLY n 3 111 THR n 3 112 VAL n 3 113 VAL n 3 114 THR n 3 115 VAL n 3 116 SER n 3 117 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 200 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 110 ? ? ? ? ? ? ? ? ? 'Oryctolagus cuniculus' 9986 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 117 ? ? ? ? ? ? ? ? ? 'Oryctolagus cuniculus' 9986 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQI APGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; 331 2 PDB 8HED 8HED ? 2 ? 1 3 PDB 8HED 8HED ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8HED B 1 ? 200 ? P0DTC2 331 ? 530 ? 331 530 2 2 8HED F 1 ? 110 ? 8HED 1 ? 110 ? 1 110 3 3 8HED G 1 ? 117 ? 8HED 1 ? 117 ? 1 117 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8HED _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8HED _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3393 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.569 ? 4617 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.402 ? 483 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.042 ? 517 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 591 ? f_plane_restr ? ? # _struct.entry_id 8HED _struct.title 'Local refinement of the SARS-CoV-2 Spike trimer in complex with RmAb 9H1 Fab' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8HED _struct_keywords.text 'VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 8 ? ASN A 13 ? PHE B 338 ASN B 343 1 ? 6 HELX_P HELX_P2 AA2 SER A 19 ? TRP A 23 ? SER B 349 TRP B 353 5 ? 5 HELX_P HELX_P3 AA3 TYR A 35 ? SER A 41 ? TYR B 365 SER B 371 1 ? 7 HELX_P HELX_P4 AA4 ASP A 75 ? ILE A 80 ? ASP B 405 ILE B 410 5 ? 6 HELX_P HELX_P5 AA5 LYS A 87 ? ASN A 92 ? LYS B 417 ASN B 422 1 ? 6 HELX_P HELX_P6 AA6 SER A 108 ? SER A 113 ? SER B 438 SER B 443 1 ? 6 HELX_P HELX_P7 AA7 GLY A 172 ? TYR A 175 ? GLY B 502 TYR B 505 5 ? 4 HELX_P HELX_P8 AA8 GLN B 78 ? ALA B 82 ? GLN F 78 ALA F 82 5 ? 5 HELX_P HELX_P9 AA9 SER C 27 ? TYR C 31 ? SER G 27 TYR G 31 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 31 SG ? ? B CYS 336 B CYS 361 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 102 SG ? ? B CYS 379 B CYS 432 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? A CYS 61 SG ? ? ? 1_555 A CYS 195 SG ? ? B CYS 391 B CYS 525 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf4 disulf ? ? A CYS 150 SG ? ? ? 1_555 A CYS 158 SG ? ? B CYS 480 B CYS 488 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 87 SG ? ? F CYS 22 F CYS 87 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf6 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 92 SG ? ? G CYS 21 G CYS 92 1_555 ? ? ? ? ? ? ? 2.033 ? ? covale1 covale one ? A ASN 1 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 331 B NAG 601 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale2 covale one ? A ASN 13 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 343 O NAG 1 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale3 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? O NAG 1 O NAG 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 6 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 6 _struct_mon_prot_cis.auth_asym_id F _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 7 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 7 _struct_mon_prot_cis.pdbx_auth_asym_id_2 F _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 6 ? AA9 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA8 5 6 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 24 ? ILE A 28 ? ASN B 354 ILE B 358 AA1 2 ASN A 64 ? ARG A 73 ? ASN B 394 ARG B 403 AA1 3 PRO A 177 ? GLU A 186 ? PRO B 507 GLU B 516 AA1 4 GLY A 101 ? ASN A 107 ? GLY B 431 ASN B 437 AA1 5 THR A 46 ? TYR A 50 ? THR B 376 TYR B 380 AA2 1 LEU A 122 ? ARG A 124 ? LEU B 452 ARG B 454 AA2 2 LEU A 162 ? SER A 164 ? LEU B 492 SER B 494 AA3 1 TYR A 143 ? GLN A 144 ? TYR B 473 GLN B 474 AA3 2 CYS A 158 ? TYR A 159 ? CYS B 488 TYR B 489 AA4 1 LEU B 3 ? THR B 6 ? LEU F 3 THR F 6 AA4 2 VAL B 18 ? ALA B 24 ? VAL F 18 ALA F 24 AA4 3 HIS B 69 ? MET B 74 ? HIS F 69 MET F 74 AA4 4 PHE B 61 ? SER B 66 ? PHE F 61 SER F 66 AA5 1 SER B 9 ? ALA B 13 ? SER F 9 ALA F 13 AA5 2 THR B 105 ? LYS B 110 ? THR F 105 LYS F 110 AA5 3 THR B 84 ? GLU B 90 ? THR F 84 GLU F 90 AA5 4 LEU B 32 ? GLN B 37 ? LEU F 32 GLN F 37 AA5 5 LYS B 44 ? TYR B 48 ? LYS F 44 TYR F 48 AA5 6 THR B 52 ? LEU B 53 ? THR F 52 LEU F 53 AA6 1 SER B 9 ? ALA B 13 ? SER F 9 ALA F 13 AA6 2 THR B 105 ? LYS B 110 ? THR F 105 LYS F 110 AA6 3 THR B 84 ? GLU B 90 ? THR F 84 GLU F 90 AA6 4 THR B 99 ? PHE B 101 ? THR F 99 PHE F 101 AA7 1 GLU C 4 ? SER C 6 ? GLU G 4 SER G 6 AA7 2 THR C 18 ? THR C 22 ? THR G 18 THR G 22 AA7 3 THR C 74 ? MET C 79 ? THR G 74 MET G 79 AA7 4 PHE C 66 ? SER C 69 ? PHE G 66 SER G 69 AA8 1 LEU C 10 ? VAL C 11 ? LEU G 10 VAL G 11 AA8 2 THR C 111 ? VAL C 115 ? THR G 111 VAL G 115 AA8 3 ALA C 88 ? ARG C 94 ? ALA G 88 ARG G 94 AA8 4 MET C 33 ? GLN C 38 ? MET G 33 GLN G 38 AA8 5 LEU C 44 ? ILE C 50 ? LEU G 44 ILE G 50 AA8 6 THR C 56 ? TYR C 58 ? THR G 56 TYR G 58 AA9 1 LEU C 10 ? VAL C 11 ? LEU G 10 VAL G 11 AA9 2 THR C 111 ? VAL C 115 ? THR G 111 VAL G 115 AA9 3 ALA C 88 ? ARG C 94 ? ALA G 88 ARG G 94 AA9 4 PHE C 106 ? TRP C 107 ? PHE G 106 TRP G 107 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 28 ? N ILE B 358 O VAL A 65 ? O VAL B 395 AA1 2 3 N TYR A 66 ? N TYR B 396 O SER A 184 ? O SER B 514 AA1 3 4 O VAL A 181 ? O VAL B 511 N ILE A 104 ? N ILE B 434 AA1 4 5 O GLY A 101 ? O GLY B 431 N TYR A 50 ? N TYR B 380 AA2 1 2 N TYR A 123 ? N TYR B 453 O GLN A 163 ? O GLN B 493 AA3 1 2 N TYR A 143 ? N TYR B 473 O TYR A 159 ? O TYR B 489 AA4 1 2 N THR B 6 ? N THR F 6 O ASN B 21 ? O ASN F 21 AA4 2 3 N ILE B 20 ? N ILE F 20 O LEU B 72 ? O LEU F 72 AA4 3 4 O THR B 73 ? O THR F 73 N ARG B 62 ? N ARG F 62 AA5 1 2 N VAL B 10 ? N VAL F 10 O GLU B 106 ? O GLU F 106 AA5 2 3 O THR B 105 ? O THR F 105 N TYR B 85 ? N TYR F 85 AA5 3 4 O GLN B 88 ? O GLN F 88 N VAL B 33 ? N VAL F 33 AA5 4 5 N TRP B 34 ? N TRP F 34 O ILE B 47 ? O ILE F 47 AA5 5 6 N TYR B 48 ? N TYR F 48 O THR B 52 ? O THR F 52 AA6 1 2 N VAL B 10 ? N VAL F 10 O GLU B 106 ? O GLU F 106 AA6 2 3 O THR B 105 ? O THR F 105 N TYR B 85 ? N TYR F 85 AA6 3 4 N GLY B 89 ? N GLY F 89 O ALA B 100 ? O ALA F 100 AA7 1 2 N GLU C 4 ? N GLU G 4 O THR C 22 ? O THR G 22 AA7 2 3 N LEU C 19 ? N LEU G 19 O LEU C 77 ? O LEU G 77 AA7 3 4 O LYS C 78 ? O LYS G 78 N THR C 67 ? N THR G 67 AA8 1 2 N VAL C 11 ? N VAL G 11 O THR C 114 ? O THR G 114 AA8 2 3 O THR C 111 ? O THR G 111 N TYR C 90 ? N TYR G 90 AA8 3 4 O ALA C 93 ? O ALA G 93 N SER C 34 ? N SER G 34 AA8 4 5 N ARG C 37 ? N ARG G 37 O GLU C 45 ? O GLU G 45 AA8 5 6 N ILE C 49 ? N ILE G 49 O ALA C 57 ? O ALA G 57 AA9 1 2 N VAL C 11 ? N VAL G 11 O THR C 114 ? O THR G 114 AA9 2 3 O THR C 111 ? O THR G 111 N TYR C 90 ? N TYR G 90 AA9 3 4 N ARG C 94 ? N ARG G 94 O PHE C 106 ? O PHE G 106 # _atom_sites.entry_id 8HED _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 331 331 ASN ASN B . n A 1 2 ILE 2 332 332 ILE ILE B . n A 1 3 THR 3 333 333 THR THR B . n A 1 4 ASN 4 334 334 ASN ASN B . n A 1 5 LEU 5 335 335 LEU LEU B . n A 1 6 CYS 6 336 336 CYS CYS B . n A 1 7 PRO 7 337 337 PRO PRO B . n A 1 8 PHE 8 338 338 PHE PHE B . n A 1 9 GLY 9 339 339 GLY GLY B . n A 1 10 GLU 10 340 340 GLU GLU B . n A 1 11 VAL 11 341 341 VAL VAL B . n A 1 12 PHE 12 342 342 PHE PHE B . n A 1 13 ASN 13 343 343 ASN ASN B . n A 1 14 ALA 14 344 344 ALA ALA B . n A 1 15 THR 15 345 345 THR THR B . n A 1 16 ARG 16 346 346 ARG ARG B . n A 1 17 PHE 17 347 347 PHE PHE B . n A 1 18 ALA 18 348 348 ALA ALA B . n A 1 19 SER 19 349 349 SER SER B . n A 1 20 VAL 20 350 350 VAL VAL B . n A 1 21 TYR 21 351 351 TYR TYR B . n A 1 22 ALA 22 352 352 ALA ALA B . n A 1 23 TRP 23 353 353 TRP TRP B . n A 1 24 ASN 24 354 354 ASN ASN B . n A 1 25 ARG 25 355 355 ARG ARG B . n A 1 26 LYS 26 356 356 LYS LYS B . n A 1 27 ARG 27 357 357 ARG ARG B . n A 1 28 ILE 28 358 358 ILE ILE B . n A 1 29 SER 29 359 359 SER SER B . n A 1 30 ASN 30 360 360 ASN ASN B . n A 1 31 CYS 31 361 361 CYS CYS B . n A 1 32 VAL 32 362 362 VAL VAL B . n A 1 33 ALA 33 363 363 ALA ALA B . n A 1 34 ASP 34 364 364 ASP ASP B . n A 1 35 TYR 35 365 365 TYR TYR B . n A 1 36 SER 36 366 366 SER SER B . n A 1 37 VAL 37 367 367 VAL VAL B . n A 1 38 LEU 38 368 368 LEU LEU B . n A 1 39 TYR 39 369 369 TYR TYR B . n A 1 40 ASN 40 370 370 ASN ASN B . n A 1 41 SER 41 371 371 SER SER B . n A 1 42 ALA 42 372 372 ALA ALA B . n A 1 43 SER 43 373 373 SER SER B . n A 1 44 PHE 44 374 374 PHE PHE B . n A 1 45 SER 45 375 375 SER SER B . n A 1 46 THR 46 376 376 THR THR B . n A 1 47 PHE 47 377 377 PHE PHE B . n A 1 48 LYS 48 378 378 LYS LYS B . n A 1 49 CYS 49 379 379 CYS CYS B . n A 1 50 TYR 50 380 380 TYR TYR B . n A 1 51 GLY 51 381 381 GLY GLY B . n A 1 52 VAL 52 382 382 VAL VAL B . n A 1 53 SER 53 383 383 SER SER B . n A 1 54 PRO 54 384 384 PRO PRO B . n A 1 55 THR 55 385 385 THR THR B . n A 1 56 LYS 56 386 386 LYS LYS B . n A 1 57 LEU 57 387 387 LEU LEU B . n A 1 58 ASN 58 388 388 ASN ASN B . n A 1 59 ASP 59 389 389 ASP ASP B . n A 1 60 LEU 60 390 390 LEU LEU B . n A 1 61 CYS 61 391 391 CYS CYS B . n A 1 62 PHE 62 392 392 PHE PHE B . n A 1 63 THR 63 393 393 THR THR B . n A 1 64 ASN 64 394 394 ASN ASN B . n A 1 65 VAL 65 395 395 VAL VAL B . n A 1 66 TYR 66 396 396 TYR TYR B . n A 1 67 ALA 67 397 397 ALA ALA B . n A 1 68 ASP 68 398 398 ASP ASP B . n A 1 69 SER 69 399 399 SER SER B . n A 1 70 PHE 70 400 400 PHE PHE B . n A 1 71 VAL 71 401 401 VAL VAL B . n A 1 72 ILE 72 402 402 ILE ILE B . n A 1 73 ARG 73 403 403 ARG ARG B . n A 1 74 GLY 74 404 404 GLY GLY B . n A 1 75 ASP 75 405 405 ASP ASP B . n A 1 76 GLU 76 406 406 GLU GLU B . n A 1 77 VAL 77 407 407 VAL VAL B . n A 1 78 ARG 78 408 408 ARG ARG B . n A 1 79 GLN 79 409 409 GLN GLN B . n A 1 80 ILE 80 410 410 ILE ILE B . n A 1 81 ALA 81 411 411 ALA ALA B . n A 1 82 PRO 82 412 412 PRO PRO B . n A 1 83 GLY 83 413 413 GLY GLY B . n A 1 84 GLN 84 414 414 GLN GLN B . n A 1 85 THR 85 415 415 THR THR B . n A 1 86 GLY 86 416 416 GLY GLY B . n A 1 87 LYS 87 417 417 LYS LYS B . n A 1 88 ILE 88 418 418 ILE ILE B . n A 1 89 ALA 89 419 419 ALA ALA B . n A 1 90 ASP 90 420 420 ASP ASP B . n A 1 91 TYR 91 421 421 TYR TYR B . n A 1 92 ASN 92 422 422 ASN ASN B . n A 1 93 TYR 93 423 423 TYR TYR B . n A 1 94 LYS 94 424 424 LYS LYS B . n A 1 95 LEU 95 425 425 LEU LEU B . n A 1 96 PRO 96 426 426 PRO PRO B . n A 1 97 ASP 97 427 427 ASP ASP B . n A 1 98 ASP 98 428 428 ASP ASP B . n A 1 99 PHE 99 429 429 PHE PHE B . n A 1 100 THR 100 430 430 THR THR B . n A 1 101 GLY 101 431 431 GLY GLY B . n A 1 102 CYS 102 432 432 CYS CYS B . n A 1 103 VAL 103 433 433 VAL VAL B . n A 1 104 ILE 104 434 434 ILE ILE B . n A 1 105 ALA 105 435 435 ALA ALA B . n A 1 106 TRP 106 436 436 TRP TRP B . n A 1 107 ASN 107 437 437 ASN ASN B . n A 1 108 SER 108 438 438 SER SER B . n A 1 109 ASN 109 439 439 ASN ASN B . n A 1 110 ASN 110 440 440 ASN ASN B . n A 1 111 LEU 111 441 441 LEU LEU B . n A 1 112 ASP 112 442 442 ASP ASP B . n A 1 113 SER 113 443 443 SER SER B . n A 1 114 LYS 114 444 444 LYS LYS B . n A 1 115 VAL 115 445 445 VAL VAL B . n A 1 116 GLY 116 446 446 GLY GLY B . n A 1 117 GLY 117 447 447 GLY GLY B . n A 1 118 ASN 118 448 448 ASN ASN B . n A 1 119 TYR 119 449 449 TYR TYR B . n A 1 120 ASN 120 450 450 ASN ASN B . n A 1 121 TYR 121 451 451 TYR TYR B . n A 1 122 LEU 122 452 452 LEU LEU B . n A 1 123 TYR 123 453 453 TYR TYR B . n A 1 124 ARG 124 454 454 ARG ARG B . n A 1 125 LEU 125 455 455 LEU LEU B . n A 1 126 PHE 126 456 456 PHE PHE B . n A 1 127 ARG 127 457 457 ARG ARG B . n A 1 128 LYS 128 458 458 LYS LYS B . n A 1 129 SER 129 459 459 SER SER B . n A 1 130 ASN 130 460 460 ASN ASN B . n A 1 131 LEU 131 461 461 LEU LEU B . n A 1 132 LYS 132 462 462 LYS LYS B . n A 1 133 PRO 133 463 463 PRO PRO B . n A 1 134 PHE 134 464 464 PHE PHE B . n A 1 135 GLU 135 465 465 GLU GLU B . n A 1 136 ARG 136 466 466 ARG ARG B . n A 1 137 ASP 137 467 467 ASP ASP B . n A 1 138 ILE 138 468 468 ILE ILE B . n A 1 139 SER 139 469 469 SER SER B . n A 1 140 THR 140 470 470 THR THR B . n A 1 141 GLU 141 471 471 GLU GLU B . n A 1 142 ILE 142 472 472 ILE ILE B . n A 1 143 TYR 143 473 473 TYR TYR B . n A 1 144 GLN 144 474 474 GLN GLN B . n A 1 145 ALA 145 475 475 ALA ALA B . n A 1 146 GLY 146 476 476 GLY GLY B . n A 1 147 SER 147 477 477 SER SER B . n A 1 148 THR 148 478 478 THR THR B . n A 1 149 PRO 149 479 479 PRO PRO B . n A 1 150 CYS 150 480 480 CYS CYS B . n A 1 151 ASN 151 481 481 ASN ASN B . n A 1 152 GLY 152 482 482 GLY GLY B . n A 1 153 VAL 153 483 483 VAL VAL B . n A 1 154 GLU 154 484 484 GLU GLU B . n A 1 155 GLY 155 485 485 GLY GLY B . n A 1 156 PHE 156 486 486 PHE PHE B . n A 1 157 ASN 157 487 487 ASN ASN B . n A 1 158 CYS 158 488 488 CYS CYS B . n A 1 159 TYR 159 489 489 TYR TYR B . n A 1 160 PHE 160 490 490 PHE PHE B . n A 1 161 PRO 161 491 491 PRO PRO B . n A 1 162 LEU 162 492 492 LEU LEU B . n A 1 163 GLN 163 493 493 GLN GLN B . n A 1 164 SER 164 494 494 SER SER B . n A 1 165 TYR 165 495 495 TYR TYR B . n A 1 166 GLY 166 496 496 GLY GLY B . n A 1 167 PHE 167 497 497 PHE PHE B . n A 1 168 GLN 168 498 498 GLN GLN B . n A 1 169 PRO 169 499 499 PRO PRO B . n A 1 170 THR 170 500 500 THR THR B . n A 1 171 ASN 171 501 501 ASN ASN B . n A 1 172 GLY 172 502 502 GLY GLY B . n A 1 173 VAL 173 503 503 VAL VAL B . n A 1 174 GLY 174 504 504 GLY GLY B . n A 1 175 TYR 175 505 505 TYR TYR B . n A 1 176 GLN 176 506 506 GLN GLN B . n A 1 177 PRO 177 507 507 PRO PRO B . n A 1 178 TYR 178 508 508 TYR TYR B . n A 1 179 ARG 179 509 509 ARG ARG B . n A 1 180 VAL 180 510 510 VAL VAL B . n A 1 181 VAL 181 511 511 VAL VAL B . n A 1 182 VAL 182 512 512 VAL VAL B . n A 1 183 LEU 183 513 513 LEU LEU B . n A 1 184 SER 184 514 514 SER SER B . n A 1 185 PHE 185 515 515 PHE PHE B . n A 1 186 GLU 186 516 516 GLU GLU B . n A 1 187 LEU 187 517 517 LEU LEU B . n A 1 188 LEU 188 518 518 LEU LEU B . n A 1 189 HIS 189 519 519 HIS HIS B . n A 1 190 ALA 190 520 520 ALA ALA B . n A 1 191 PRO 191 521 521 PRO PRO B . n A 1 192 ALA 192 522 522 ALA ALA B . n A 1 193 THR 193 523 523 THR THR B . n A 1 194 VAL 194 524 524 VAL VAL B . n A 1 195 CYS 195 525 525 CYS CYS B . n A 1 196 GLY 196 526 526 GLY GLY B . n A 1 197 PRO 197 527 527 PRO PRO B . n A 1 198 LYS 198 528 528 LYS LYS B . n A 1 199 LYS 199 529 529 LYS LYS B . n A 1 200 SER 200 530 530 SER SER B . n B 2 1 GLN 1 1 1 GLN GLN F . n B 2 2 VAL 2 2 2 VAL VAL F . n B 2 3 LEU 3 3 3 LEU LEU F . n B 2 4 THR 4 4 4 THR THR F . n B 2 5 GLN 5 5 5 GLN GLN F . n B 2 6 THR 6 6 6 THR THR F . n B 2 7 PRO 7 7 7 PRO PRO F . n B 2 8 SER 8 8 8 SER SER F . n B 2 9 SER 9 9 9 SER SER F . n B 2 10 VAL 10 10 10 VAL VAL F . n B 2 11 SER 11 11 11 SER SER F . n B 2 12 ALA 12 12 12 ALA ALA F . n B 2 13 ALA 13 13 13 ALA ALA F . n B 2 14 VAL 14 14 14 VAL VAL F . n B 2 15 GLY 15 15 15 GLY GLY F . n B 2 16 GLY 16 16 16 GLY GLY F . n B 2 17 THR 17 17 17 THR THR F . n B 2 18 VAL 18 18 18 VAL VAL F . n B 2 19 THR 19 19 19 THR THR F . n B 2 20 ILE 20 20 20 ILE ILE F . n B 2 21 ASN 21 21 21 ASN ASN F . n B 2 22 CYS 22 22 22 CYS CYS F . n B 2 23 GLN 23 23 23 GLN GLN F . n B 2 24 ALA 24 24 24 ALA ALA F . n B 2 25 SER 25 25 25 SER SER F . n B 2 26 GLU 26 26 26 GLU GLU F . n B 2 27 ASP 27 27 27 ASP ASP F . n B 2 28 ILE 28 28 28 ILE ILE F . n B 2 29 TYR 29 29 29 TYR TYR F . n B 2 30 ASP 30 30 30 ASP ASP F . n B 2 31 ASN 31 31 31 ASN ASN F . n B 2 32 LEU 32 32 32 LEU LEU F . n B 2 33 VAL 33 33 33 VAL VAL F . n B 2 34 TRP 34 34 34 TRP TRP F . n B 2 35 TYR 35 35 35 TYR TYR F . n B 2 36 GLN 36 36 36 GLN GLN F . n B 2 37 GLN 37 37 37 GLN GLN F . n B 2 38 LYS 38 38 38 LYS LYS F . n B 2 39 PRO 39 39 39 PRO PRO F . n B 2 40 GLY 40 40 40 GLY GLY F . n B 2 41 GLN 41 41 41 GLN GLN F . n B 2 42 PRO 42 42 42 PRO PRO F . n B 2 43 PRO 43 43 43 PRO PRO F . n B 2 44 LYS 44 44 44 LYS LYS F . n B 2 45 LEU 45 45 45 LEU LEU F . n B 2 46 LEU 46 46 46 LEU LEU F . n B 2 47 ILE 47 47 47 ILE ILE F . n B 2 48 TYR 48 48 48 TYR TYR F . n B 2 49 ASP 49 49 49 ASP ASP F . n B 2 50 ALA 50 50 50 ALA ALA F . n B 2 51 SER 51 51 51 SER SER F . n B 2 52 THR 52 52 52 THR THR F . n B 2 53 LEU 53 53 53 LEU LEU F . n B 2 54 ALA 54 54 54 ALA ALA F . n B 2 55 PHE 55 55 55 PHE PHE F . n B 2 56 GLY 56 56 56 GLY GLY F . n B 2 57 VAL 57 57 57 VAL VAL F . n B 2 58 SER 58 58 58 SER SER F . n B 2 59 SER 59 59 59 SER SER F . n B 2 60 ARG 60 60 60 ARG ARG F . n B 2 61 PHE 61 61 61 PHE PHE F . n B 2 62 ARG 62 62 62 ARG ARG F . n B 2 63 GLY 63 63 63 GLY GLY F . n B 2 64 SER 64 64 64 SER SER F . n B 2 65 GLY 65 65 65 GLY GLY F . n B 2 66 SER 66 66 66 SER SER F . n B 2 67 GLY 67 67 67 GLY GLY F . n B 2 68 THR 68 68 68 THR THR F . n B 2 69 HIS 69 69 69 HIS HIS F . n B 2 70 PHE 70 70 70 PHE PHE F . n B 2 71 THR 71 71 71 THR THR F . n B 2 72 LEU 72 72 72 LEU LEU F . n B 2 73 THR 73 73 73 THR THR F . n B 2 74 MET 74 74 74 MET MET F . n B 2 75 ARG 75 75 75 ARG ARG F . n B 2 76 ASP 76 76 76 ASP ASP F . n B 2 77 VAL 77 77 77 VAL VAL F . n B 2 78 GLN 78 78 78 GLN GLN F . n B 2 79 CYS 79 79 79 CYS CYS F . n B 2 80 ASP 80 80 80 ASP ASP F . n B 2 81 ASP 81 81 81 ASP ASP F . n B 2 82 ALA 82 82 82 ALA ALA F . n B 2 83 ALA 83 83 83 ALA ALA F . n B 2 84 THR 84 84 84 THR THR F . n B 2 85 TYR 85 85 85 TYR TYR F . n B 2 86 TYR 86 86 86 TYR TYR F . n B 2 87 CYS 87 87 87 CYS CYS F . n B 2 88 GLN 88 88 88 GLN GLN F . n B 2 89 GLY 89 89 89 GLY GLY F . n B 2 90 GLU 90 90 90 GLU GLU F . n B 2 91 PHE 91 91 91 PHE PHE F . n B 2 92 SER 92 92 92 SER SER F . n B 2 93 CYS 93 93 93 CYS CYS F . n B 2 94 SER 94 94 94 SER SER F . n B 2 95 SER 95 95 95 SER SER F . n B 2 96 GLY 96 96 96 GLY GLY F . n B 2 97 ASP 97 97 97 ASP ASP F . n B 2 98 CYS 98 98 98 CYS CYS F . n B 2 99 THR 99 99 99 THR THR F . n B 2 100 ALA 100 100 100 ALA ALA F . n B 2 101 PHE 101 101 101 PHE PHE F . n B 2 102 GLY 102 102 102 GLY GLY F . n B 2 103 GLY 103 103 103 GLY GLY F . n B 2 104 GLY 104 104 104 GLY GLY F . n B 2 105 THR 105 105 105 THR THR F . n B 2 106 GLU 106 106 106 GLU GLU F . n B 2 107 VAL 107 107 107 VAL VAL F . n B 2 108 VAL 108 108 108 VAL VAL F . n B 2 109 VAL 109 109 109 VAL VAL F . n B 2 110 LYS 110 110 110 LYS LYS F . n C 3 1 GLN 1 1 1 GLN GLN G . n C 3 2 SER 2 2 2 SER SER G . n C 3 3 VAL 3 3 3 VAL VAL G . n C 3 4 GLU 4 4 4 GLU GLU G . n C 3 5 GLU 5 5 5 GLU GLU G . n C 3 6 SER 6 6 6 SER SER G . n C 3 7 GLY 7 7 7 GLY GLY G . n C 3 8 GLY 8 8 8 GLY GLY G . n C 3 9 ARG 9 9 9 ARG ARG G . n C 3 10 LEU 10 10 10 LEU LEU G . n C 3 11 VAL 11 11 11 VAL VAL G . n C 3 12 THR 12 12 12 THR THR G . n C 3 13 PRO 13 13 13 PRO PRO G . n C 3 14 GLY 14 14 14 GLY GLY G . n C 3 15 THR 15 15 15 THR THR G . n C 3 16 PRO 16 16 16 PRO PRO G . n C 3 17 LEU 17 17 17 LEU LEU G . n C 3 18 THR 18 18 18 THR THR G . n C 3 19 LEU 19 19 19 LEU LEU G . n C 3 20 THR 20 20 20 THR THR G . n C 3 21 CYS 21 21 21 CYS CYS G . n C 3 22 THR 22 22 22 THR THR G . n C 3 23 VAL 23 23 23 VAL VAL G . n C 3 24 SER 24 24 24 SER SER G . n C 3 25 GLY 25 25 25 GLY GLY G . n C 3 26 PHE 26 26 26 PHE PHE G . n C 3 27 SER 27 27 27 SER SER G . n C 3 28 LEU 28 28 28 LEU LEU G . n C 3 29 SER 29 29 29 SER SER G . n C 3 30 ARG 30 30 30 ARG ARG G . n C 3 31 TYR 31 31 31 TYR TYR G . n C 3 32 ALA 32 32 32 ALA ALA G . n C 3 33 MET 33 33 33 MET MET G . n C 3 34 SER 34 34 34 SER SER G . n C 3 35 TRP 35 35 35 TRP TRP G . n C 3 36 VAL 36 36 36 VAL VAL G . n C 3 37 ARG 37 37 37 ARG ARG G . n C 3 38 GLN 38 38 38 GLN GLN G . n C 3 39 ALA 39 39 39 ALA ALA G . n C 3 40 PRO 40 40 40 PRO PRO G . n C 3 41 GLY 41 41 41 GLY GLY G . n C 3 42 LYS 42 42 42 LYS LYS G . n C 3 43 GLY 43 43 43 GLY GLY G . n C 3 44 LEU 44 44 44 LEU LEU G . n C 3 45 GLU 45 45 45 GLU GLU G . n C 3 46 TRP 46 46 46 TRP TRP G . n C 3 47 ILE 47 47 47 ILE ILE G . n C 3 48 GLY 48 48 48 GLY GLY G . n C 3 49 ILE 49 49 49 ILE ILE G . n C 3 50 ILE 50 50 50 ILE ILE G . n C 3 51 VAL 51 51 51 VAL VAL G . n C 3 52 ASP 52 52 52 ASP ASP G . n C 3 53 SER 53 53 53 SER SER G . n C 3 54 GLY 54 54 54 GLY GLY G . n C 3 55 HIS 55 55 55 HIS HIS G . n C 3 56 THR 56 56 56 THR THR G . n C 3 57 ALA 57 57 57 ALA ALA G . n C 3 58 TYR 58 58 58 TYR TYR G . n C 3 59 ALA 59 59 59 ALA ALA G . n C 3 60 SER 60 60 60 SER SER G . n C 3 61 TRP 61 61 61 TRP TRP G . n C 3 62 ALA 62 62 62 ALA ALA G . n C 3 63 LYS 63 63 63 LYS LYS G . n C 3 64 GLY 64 64 64 GLY GLY G . n C 3 65 ARG 65 65 65 ARG ARG G . n C 3 66 PHE 66 66 66 PHE PHE G . n C 3 67 THR 67 67 67 THR THR G . n C 3 68 ILE 68 68 68 ILE ILE G . n C 3 69 SER 69 69 69 SER SER G . n C 3 70 ARG 70 70 70 ARG ARG G . n C 3 71 THR 71 71 71 THR THR G . n C 3 72 SER 72 72 72 SER SER G . n C 3 73 THR 73 73 73 THR THR G . n C 3 74 THR 74 74 74 THR THR G . n C 3 75 VAL 75 75 75 VAL VAL G . n C 3 76 ASP 76 76 76 ASP ASP G . n C 3 77 LEU 77 77 77 LEU LEU G . n C 3 78 LYS 78 78 78 LYS LYS G . n C 3 79 MET 79 79 79 MET MET G . n C 3 80 THR 80 80 80 THR THR G . n C 3 81 SER 81 81 81 SER SER G . n C 3 82 LEU 82 82 82 LEU LEU G . n C 3 83 THR 83 83 83 THR THR G . n C 3 84 THR 84 84 84 THR THR G . n C 3 85 GLU 85 85 85 GLU GLU G . n C 3 86 ASP 86 86 86 ASP ASP G . n C 3 87 THR 87 87 87 THR THR G . n C 3 88 ALA 88 88 88 ALA ALA G . n C 3 89 THR 89 89 89 THR THR G . n C 3 90 TYR 90 90 90 TYR TYR G . n C 3 91 PHE 91 91 91 PHE PHE G . n C 3 92 CYS 92 92 92 CYS CYS G . n C 3 93 ALA 93 93 93 ALA ALA G . n C 3 94 ARG 94 94 94 ARG ARG G . n C 3 95 GLU 95 95 95 GLU GLU G . n C 3 96 THR 96 96 96 THR THR G . n C 3 97 GLY 97 97 97 GLY GLY G . n C 3 98 GLY 98 98 98 GLY GLY G . n C 3 99 GLY 99 99 99 GLY GLY G . n C 3 100 ALA 100 100 100 ALA ALA G . n C 3 101 PHE 101 101 101 PHE PHE G . n C 3 102 TYR 102 102 102 TYR TYR G . n C 3 103 VAL 103 103 103 VAL VAL G . n C 3 104 PHE 104 104 104 PHE PHE G . n C 3 105 GLU 105 105 105 GLU GLU G . n C 3 106 PHE 106 106 106 PHE PHE G . n C 3 107 TRP 107 107 107 TRP TRP G . n C 3 108 GLY 108 108 108 GLY GLY G . n C 3 109 PRO 109 109 109 PRO PRO G . n C 3 110 GLY 110 110 110 GLY GLY G . n C 3 111 THR 111 111 111 THR THR G . n C 3 112 VAL 112 112 112 VAL VAL G . n C 3 113 VAL 113 113 113 VAL VAL G . n C 3 114 THR 114 114 114 THR THR G . n C 3 115 VAL 115 115 115 VAL VAL G . n C 3 116 SER 116 116 116 SER SER G . n C 3 117 SER 117 117 117 SER SER G . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 yanght@shanghaitech.edu.cn Haitao Yang ? 'principal investigator/group leader' 0000-0002-1875-3268 4 xiaoyun.ji@nju.edu.cn Xiaoyun Ji ? 'principal investigator/group leader' 0000-0002-0801-8825 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1305 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-04-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20.1_4487: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 8HED _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8HED _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8HED _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.59 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 111153 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 'MULTIPLE SOURCES' COMPLEX 'SARS-CoV-2 WT spike glycoprotein RBD complex with 9H1 Fabs' ? ? ? '1, 2, 3' 2 1 RECOMBINANT COMPLEX 'SARS-CoV-2 spike glycoprotein RBD' 'SARS-CoV-2 WT spike protein receptor-binding domain' ? ? 1 3 1 RECOMBINANT COMPLEX '9H1 Fab' 'Fab fragment generated by proteolytic cleavage of IgG antibody' ? ? '2, 3' # _em_imaging.entry_id 8HED _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 2800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8HED _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8HED _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE B 338 ? ? 66.67 -8.22 2 1 ASP B 428 ? ? -98.46 36.63 3 1 ASN B 481 ? ? 59.84 11.87 4 1 LYS B 528 ? ? 58.08 -149.24 5 1 TYR F 29 ? ? 59.52 -122.81 6 1 ALA F 50 ? ? 68.70 -4.75 7 1 ALA F 83 ? ? -165.16 -168.41 8 1 PHE F 91 ? ? -152.62 63.03 9 1 SER F 92 ? ? 52.75 -143.42 10 1 CYS F 93 ? ? -141.58 -91.96 11 1 ASP F 97 ? ? -140.36 52.76 12 1 CYS F 98 ? ? 53.10 -87.93 13 1 SER G 29 ? ? -64.13 7.17 14 1 LYS G 63 ? ? 67.52 -4.61 15 1 THR G 73 ? ? -141.04 29.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B HIS 519 ? CG ? A HIS 189 CG 2 1 Y 1 B HIS 519 ? ND1 ? A HIS 189 ND1 3 1 Y 1 B HIS 519 ? CD2 ? A HIS 189 CD2 4 1 Y 1 B HIS 519 ? CE1 ? A HIS 189 CE1 5 1 Y 1 B HIS 519 ? NE2 ? A HIS 189 NE2 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue ? ? 1 1 2697049 'Severe acute respiratory syndrome coronavirus 2' ? ? ? ? ? ? 2 2 9986 'Oryctolagus cuniculus' ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain HEK293 1 1 9606 'Homo sapiens' ? ? HEK293 2 2 9606 'Homo sapiens' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other government' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 O NAG 1 O NAG 19 n D 4 NAG 2 O NAG 2 O NAG 20 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #