data_8P3A # _entry.id 8P3A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8P3A pdb_00008p3a 10.2210/pdb8p3a/pdb WWPDB D_1292129923 ? ? BMRB 34817 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'CRYSTAL STRUCTURE OF THE ENZYMATICALLY ACTIVE DOMAIN OF THE LISTERIA MONOCYTOGENES BACTERIOPHAGE 500 ENDOLYSIN PLY500' 2VO9 unspecified PDB 'Bacteriophage T5 l-alanoyl-d-glutamate peptidase comlpex with Zn2+' 2MXZ unspecified BMRB 'bacteriophage T5 l-alanoyl-d-glutamate peptidase Zn2+/Ca2+ form' 34817 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8P3A _pdbx_database_status.recvd_initial_deposition_date 2023-05-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REPL _pdbx_database_status.methods_development_category CASD-NMR _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Prokhorov, D.A.' 1 0000-0002-9366-1216 'Kutyshenko, V.P.' 2 0000-0003-3665-6047 'Mikoulinskaia, G.V.' 3 0000-0003-0596-0003 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Mechanism of Ca2+-dependent activation of L-alanoyl-D-glutamate peptidase bacteriophage T5.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prokhorov, D.A.' 1 0000-0002-9366-1216 primary 'Mikoulinskaia, G.V.' 2 0000-0003-0596-0003 primary 'Molochkov, N.V.' 3 ? primary 'Uversky, V.N.' 4 0000-0002-4037-5857 primary 'Kutyshenko, V.P.' 5 0000-0003-3665-6047 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8P3A _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8P3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'L-alanyl-D-glutamate peptidase' 15286.202 1 3.4.24.- ? ? 'ZN - ZN2+ ION CA - CA2+ ION' 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Endolysin,Lysozyme # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSFKFGKNSEKQLATVKPELQKVARRALELSPYDFTIVQGIRTVAQSAQNIANGTSFLKDPSKSKHITGDAIDFAPYING KIDWNDLEAFWAVKKAFEQAGKELGIKLRFGADWNASGDYHDEIKRGTYDGGHVELV ; _entity_poly.pdbx_seq_one_letter_code_can ;MSFKFGKNSEKQLATVKPELQKVARRALELSPYDFTIVQGIRTVAQSAQNIANGTSFLKDPSKSKHITGDAIDFAPYING KIDWNDLEAFWAVKKAFEQAGKELGIKLRFGADWNASGDYHDEIKRGTYDGGHVELV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 PHE n 1 4 LYS n 1 5 PHE n 1 6 GLY n 1 7 LYS n 1 8 ASN n 1 9 SER n 1 10 GLU n 1 11 LYS n 1 12 GLN n 1 13 LEU n 1 14 ALA n 1 15 THR n 1 16 VAL n 1 17 LYS n 1 18 PRO n 1 19 GLU n 1 20 LEU n 1 21 GLN n 1 22 LYS n 1 23 VAL n 1 24 ALA n 1 25 ARG n 1 26 ARG n 1 27 ALA n 1 28 LEU n 1 29 GLU n 1 30 LEU n 1 31 SER n 1 32 PRO n 1 33 TYR n 1 34 ASP n 1 35 PHE n 1 36 THR n 1 37 ILE n 1 38 VAL n 1 39 GLN n 1 40 GLY n 1 41 ILE n 1 42 ARG n 1 43 THR n 1 44 VAL n 1 45 ALA n 1 46 GLN n 1 47 SER n 1 48 ALA n 1 49 GLN n 1 50 ASN n 1 51 ILE n 1 52 ALA n 1 53 ASN n 1 54 GLY n 1 55 THR n 1 56 SER n 1 57 PHE n 1 58 LEU n 1 59 LYS n 1 60 ASP n 1 61 PRO n 1 62 SER n 1 63 LYS n 1 64 SER n 1 65 LYS n 1 66 HIS n 1 67 ILE n 1 68 THR n 1 69 GLY n 1 70 ASP n 1 71 ALA n 1 72 ILE n 1 73 ASP n 1 74 PHE n 1 75 ALA n 1 76 PRO n 1 77 TYR n 1 78 ILE n 1 79 ASN n 1 80 GLY n 1 81 LYS n 1 82 ILE n 1 83 ASP n 1 84 TRP n 1 85 ASN n 1 86 ASP n 1 87 LEU n 1 88 GLU n 1 89 ALA n 1 90 PHE n 1 91 TRP n 1 92 ALA n 1 93 VAL n 1 94 LYS n 1 95 LYS n 1 96 ALA n 1 97 PHE n 1 98 GLU n 1 99 GLN n 1 100 ALA n 1 101 GLY n 1 102 LYS n 1 103 GLU n 1 104 LEU n 1 105 GLY n 1 106 ILE n 1 107 LYS n 1 108 LEU n 1 109 ARG n 1 110 PHE n 1 111 GLY n 1 112 ALA n 1 113 ASP n 1 114 TRP n 1 115 ASN n 1 116 ALA n 1 117 SER n 1 118 GLY n 1 119 ASP n 1 120 TYR n 1 121 HIS n 1 122 ASP n 1 123 GLU n 1 124 ILE n 1 125 LYS n 1 126 ARG n 1 127 GLY n 1 128 THR n 1 129 TYR n 1 130 ASP n 1 131 GLY n 1 132 GLY n 1 133 HIS n 1 134 VAL n 1 135 GLU n 1 136 LEU n 1 137 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 137 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'lys, T5.040, T5p039, orf10c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia phage T5' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2695836 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli B' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 37762 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET3a _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENLYS_BPT5 _struct_ref.pdbx_db_accession Q6QGP7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSFKFGKNSEKQLATVKPELQKVARRALELSPYDFTIVQGIRTVAQSAQNIANGTSFLKDPSKSKHITGDAIDFAPYING KIDWNDLEAFWAVKKAFEQAGKELGIKLRFGADWNASGDYHDEIKRGTYDGGHVELV ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8P3A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 137 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6QGP7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 137 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 137 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 2 '2D 1H-15N HSQC' 1 isotropic 2 1 2 '2D 1H-13C HSQC' 1 isotropic 3 1 2 '3D HNCACB' 1 isotropic 4 1 2 '3D CBCA(CO)NH' 1 isotropic 5 1 2 '3D C(CO)NH' 1 isotropic 6 1 2 '3D 1H-15N TOCSY' 1 isotropic 7 1 2 '3D HCCH-TOCSY' 1 isotropic 8 1 2 '2D CBHD' 1 isotropic 12 1 2 '3D HNCO' 1 isotropic 11 1 2 '2D 1H-13C HSQC aromatic' 1 isotropic 10 1 2 '3D 1H-13C NOESY aliphatic' 1 isotropic 9 1 2 '3D 1H-15N NOESY' 1 isotropic 13 1 2 '3D HN(CO)CA' 1 isotropic 14 1 2 '3D 1H-13C NOESY aromatic' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 4.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ;The sample remained stable throughout the entire data collection period. The stability of the sample was monitored by periodically recording 15N-HSQC spectra and comparing them. ; _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 5 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.05 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.01 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 2 _pdbx_nmr_sample_details.contents ;0.8 mM [U-100% 13C; U-100% 15N] l-alanoyl-d-glutamate peptidase, 50 mM [U-100% 2H] sodium acetate, 3 mM Zn(NO3)2, 3 mM CaCl2, 0.03 % sodium azide, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 'endo_T5 Zn-Ca' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'The sample was obtained by renaturation from a solution of 8 M urea in the presence of Zn2+ and Ca2+ salts' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details 'TXI probehead' # _pdbx_nmr_refine.entry_id 8P3A _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 8P3A _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8P3A _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' CYANA 2.1 'Guntert, Mumenthaler and Wuthrich' 2 refinement CYANA 2.1 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' CARA 'Release: 1.8.4.2' 'Keller and Wuthrich' 4 processing TopSpin 2.1 'Bruker Biospin' 5 'peak picking' TopSpin 2.1 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8P3A _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8P3A _struct.title 'bacteriophage T5 l-alanoyl-d-glutamate peptidase Zn2+/Ca2+ form' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8P3A _struct_keywords.text 'l-alanoyl-d-glutamate peptidase, bacteriophage T5, endolysin, Zn2+ and Ca2+ containing form, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 6 ? THR A 15 ? GLY A 6 THR A 15 1 ? 10 HELX_P HELX_P2 AA2 GLU A 19 ? LEU A 30 ? GLU A 19 LEU A 30 1 ? 12 HELX_P HELX_P3 AA3 THR A 43 ? ILE A 51 ? THR A 43 ILE A 51 1 ? 9 HELX_P HELX_P4 AA4 LYS A 65 ? GLY A 69 ? LYS A 65 GLY A 69 5 ? 5 HELX_P HELX_P5 AA5 ASP A 86 ? GLY A 105 ? ASP A 86 GLY A 105 1 ? 20 HELX_P HELX_P6 AA6 ASP A 122 ? GLY A 127 ? ASP A 122 GLY A 127 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 113 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 113 A CA 202 1_555 ? ? ? ? ? ? ? 3.133 ? ? metalc2 metalc ? ? A ASN 115 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 115 A CA 202 1_555 ? ? ? ? ? ? ? 3.045 ? ? metalc3 metalc ? ? A SER 117 OG ? ? ? 1_555 C CA . CA ? ? A SER 117 A CA 202 1_555 ? ? ? ? ? ? ? 3.061 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 34 ? GLN A 39 ? ASP A 34 GLN A 39 AA1 2 ILE A 72 ? ILE A 78 ? ILE A 72 ILE A 78 AA1 3 LYS A 81 ? ILE A 82 ? LYS A 81 ILE A 82 AA2 1 ASP A 34 ? GLN A 39 ? ASP A 34 GLN A 39 AA2 2 ILE A 72 ? ILE A 78 ? ILE A 72 ILE A 78 AA2 3 HIS A 133 ? LEU A 136 ? HIS A 133 LEU A 136 AA2 4 LEU A 108 ? GLY A 111 ? LEU A 108 GLY A 111 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 39 ? N GLN A 39 O ASP A 73 ? O ASP A 73 AA1 2 3 N ILE A 78 ? N ILE A 78 O LYS A 81 ? O LYS A 81 AA2 1 2 N GLN A 39 ? N GLN A 39 O ASP A 73 ? O ASP A 73 AA2 2 3 N ILE A 72 ? N ILE A 72 O VAL A 134 ? O VAL A 134 AA2 3 4 O HIS A 133 ? O HIS A 133 N GLY A 111 ? N GLY A 111 # _database_PDB_matrix.entry_id 8P3A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 8P3A _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA H N O S SN ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 TRP 84 84 84 TRP TRP A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 TRP 91 91 91 TRP TRP A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 TRP 114 114 114 TRP TRP A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 VAL 137 137 137 VAL VAL A . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email mikulinskaya@bibch.ru _pdbx_contact_author.name_first Galina _pdbx_contact_author.name_last Mikoulinskaia _pdbx_contact_author.name_mi V. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0596-0003 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 201 151 ZN ZN A . C 3 CA 1 202 165 CA CA A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 190 ? 1 MORE -36 ? 1 'SSA (A^2)' 8270 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OD1 ? A ASN 115 ? A ASN 115 ? 1_555 57.7 ? 2 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OG ? A SER 117 ? A SER 117 ? 1_555 69.0 ? 3 OD1 ? A ASN 115 ? A ASN 115 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OG ? A SER 117 ? A SER 117 ? 1_555 74.0 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-07-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_entry_details.entry_id 8P3A _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 2 'l-alanoyl-d-glutamate peptidase' 0.8 ? mM '[U-100% 13C; U-100% 15N]' 2 'sodium acetate' 50 ? mM '[U-100% 2H]' 2 'Zn(NO3)2' 3 ? mM 'natural abundance' 2 CaCl2 3 ? mM 'natural abundance' 2 'sodium azide' 0.03 ? % 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 3 ? ? -69.86 -168.22 2 1 ILE A 51 ? ? -98.38 -64.79 3 1 ALA A 52 ? ? 70.20 61.73 4 1 ASN A 53 ? ? -171.00 28.59 5 1 THR A 55 ? ? 35.83 80.29 6 1 ASP A 60 ? ? -174.40 60.69 7 1 PRO A 61 ? ? -69.73 -170.02 8 1 LYS A 63 ? ? -93.86 30.84 9 1 ALA A 71 ? ? 158.97 134.38 10 1 ALA A 112 ? ? 178.01 34.36 11 1 ASP A 119 ? ? 179.48 154.85 12 1 TYR A 120 ? ? -152.45 27.59 13 1 ASP A 130 ? ? 35.18 46.84 14 2 PHE A 3 ? ? -64.29 -169.00 15 2 PRO A 18 ? ? -69.80 -178.56 16 2 LEU A 30 ? ? -140.48 27.31 17 2 ILE A 51 ? ? -97.60 -65.87 18 2 ALA A 52 ? ? 71.23 53.21 19 2 ASN A 53 ? ? -144.44 15.69 20 2 THR A 55 ? ? 36.52 49.43 21 2 ASP A 60 ? ? 179.89 58.81 22 2 PRO A 61 ? ? -69.78 -169.60 23 2 ALA A 71 ? ? 158.49 133.75 24 2 ASP A 86 ? ? -66.52 87.74 25 2 ALA A 112 ? ? 174.21 31.52 26 2 TYR A 120 ? ? -154.72 -38.37 27 2 ASP A 130 ? ? -42.39 104.19 28 3 PHE A 3 ? ? -64.90 -169.46 29 3 LEU A 30 ? ? -140.08 26.25 30 3 ILE A 51 ? ? -96.96 -64.10 31 3 ASN A 53 ? ? -157.11 23.07 32 3 THR A 55 ? ? 36.58 49.77 33 3 LYS A 59 ? ? -125.02 -56.93 34 3 ASP A 60 ? ? -165.19 62.56 35 3 PRO A 61 ? ? -69.80 -170.36 36 3 SER A 62 ? ? -102.19 -169.30 37 3 LYS A 63 ? ? -94.22 41.01 38 3 ALA A 71 ? ? 160.95 132.45 39 3 ALA A 112 ? ? 175.48 31.83 40 3 TYR A 120 ? ? -155.94 -39.87 41 3 ASP A 130 ? ? -44.40 104.99 42 4 PHE A 3 ? ? -64.00 -168.72 43 4 PRO A 18 ? ? -69.69 -179.14 44 4 LEU A 30 ? ? -140.54 26.29 45 4 ILE A 51 ? ? -96.94 -68.68 46 4 ALA A 52 ? ? 71.43 54.70 47 4 ASN A 53 ? ? -145.03 16.03 48 4 THR A 55 ? ? 36.47 49.07 49 4 LYS A 59 ? ? -133.56 -40.45 50 4 ASP A 60 ? ? -174.37 62.85 51 4 PRO A 61 ? ? -69.79 -170.05 52 4 SER A 62 ? ? -119.23 -168.76 53 4 ALA A 71 ? ? 160.90 132.24 54 4 ASP A 86 ? ? -66.35 90.01 55 4 ALA A 112 ? ? 174.09 38.94 56 4 ASP A 119 ? ? 174.46 139.33 57 5 LYS A 4 ? ? -171.44 144.73 58 5 LEU A 30 ? ? -140.79 26.80 59 5 ILE A 51 ? ? -96.24 -68.12 60 5 ASN A 53 ? ? -145.96 13.96 61 5 THR A 55 ? ? 36.36 55.45 62 5 ASP A 60 ? ? -155.23 66.57 63 5 PRO A 61 ? ? -69.75 -170.12 64 5 ALA A 71 ? ? 159.81 132.70 65 5 ASP A 86 ? ? -66.50 89.37 66 5 ALA A 112 ? ? 177.67 37.85 67 5 ASP A 119 ? ? 178.72 155.46 68 5 TYR A 120 ? ? -153.05 19.03 69 5 TYR A 129 ? ? 72.99 -0.34 70 5 ASP A 130 ? ? 39.59 40.76 71 6 PHE A 3 ? ? -63.90 -168.66 72 6 PRO A 18 ? ? -69.75 -179.36 73 6 LEU A 30 ? ? -140.21 26.31 74 6 ILE A 51 ? ? -98.04 -62.88 75 6 ASN A 53 ? ? -151.23 22.77 76 6 THR A 55 ? ? 36.51 50.24 77 6 ASP A 60 ? ? -176.63 60.69 78 6 PRO A 61 ? ? -69.84 -169.83 79 6 SER A 62 ? ? -100.26 -168.41 80 6 ALA A 71 ? ? 161.68 132.49 81 6 ASP A 86 ? ? -66.71 88.53 82 6 ALA A 112 ? ? 172.03 68.14 83 6 ASP A 119 ? ? 168.64 153.45 84 6 TYR A 120 ? ? -141.52 51.45 85 7 PHE A 3 ? ? -67.98 -167.70 86 7 PRO A 18 ? ? -69.77 -179.78 87 7 LEU A 30 ? ? -140.34 25.95 88 7 ILE A 51 ? ? -97.26 -64.56 89 7 ALA A 52 ? ? 72.21 46.25 90 7 ASN A 53 ? ? -152.00 25.19 91 7 THR A 55 ? ? 35.61 79.44 92 7 LYS A 59 ? ? -131.06 -40.85 93 7 ASP A 60 ? ? -179.60 60.87 94 7 PRO A 61 ? ? -69.77 -169.70 95 7 LYS A 63 ? ? -93.95 30.54 96 7 ALA A 71 ? ? 159.25 133.59 97 7 ASP A 86 ? ? -66.48 89.16 98 7 ALA A 112 ? ? 179.25 31.79 99 7 ALA A 116 ? ? -130.19 -38.69 100 7 TYR A 120 ? ? -151.88 -40.96 101 7 ASP A 122 ? ? 76.90 -35.29 102 7 ASP A 130 ? ? 37.64 48.70 103 8 PHE A 3 ? ? -70.56 -167.96 104 8 PRO A 18 ? ? -69.74 -178.65 105 8 ILE A 51 ? ? -96.93 -72.98 106 8 ASN A 53 ? ? -161.08 25.23 107 8 THR A 55 ? ? 36.71 49.35 108 8 LYS A 59 ? ? -134.55 -45.30 109 8 ASP A 60 ? ? -176.13 63.30 110 8 PRO A 61 ? ? -69.74 -169.80 111 8 SER A 62 ? ? -120.16 -168.64 112 8 ALA A 71 ? ? 159.04 133.64 113 8 ASP A 86 ? ? -67.86 91.91 114 8 ALA A 112 ? ? 175.86 33.04 115 8 ALA A 116 ? ? -130.31 -37.80 116 8 ASP A 119 ? ? 170.09 -179.79 117 8 TYR A 120 ? ? -144.01 26.94 118 9 PHE A 3 ? ? -63.98 -169.56 119 9 PRO A 18 ? ? -69.81 -178.78 120 9 LEU A 30 ? ? -140.22 26.36 121 9 ILE A 51 ? ? -97.90 -65.54 122 9 ALA A 52 ? ? 71.55 58.57 123 9 ASN A 53 ? ? -165.41 26.49 124 9 THR A 55 ? ? 35.65 69.71 125 9 ASP A 60 ? ? -176.18 60.72 126 9 PRO A 61 ? ? -69.77 -169.91 127 9 LYS A 63 ? ? -92.59 38.52 128 9 ALA A 71 ? ? 161.32 132.50 129 9 ASP A 86 ? ? -65.28 89.65 130 9 ALA A 112 ? ? 177.53 34.69 131 9 ASP A 119 ? ? 173.27 173.15 132 9 TYR A 120 ? ? -155.26 29.68 133 9 HIS A 121 ? ? -101.43 -66.73 134 10 PHE A 3 ? ? -63.92 -168.83 135 10 PRO A 18 ? ? -69.78 -178.55 136 10 ILE A 51 ? ? -96.93 -68.22 137 10 ASN A 53 ? ? -159.95 24.71 138 10 THR A 55 ? ? 36.75 48.91 139 10 LYS A 59 ? ? -128.00 -55.10 140 10 ASP A 60 ? ? -165.77 62.06 141 10 PRO A 61 ? ? -69.74 -170.04 142 10 SER A 62 ? ? -102.10 -169.39 143 10 LYS A 63 ? ? -95.74 32.11 144 10 ALA A 71 ? ? 161.08 132.26 145 10 ASP A 86 ? ? -66.80 87.94 146 10 ALA A 112 ? ? -178.54 33.22 147 10 ALA A 116 ? ? -132.28 -39.02 148 10 ASP A 119 ? ? 171.98 156.71 149 10 TYR A 120 ? ? -155.24 30.98 150 11 PHE A 3 ? ? -64.20 -168.05 151 11 PRO A 18 ? ? -69.78 -179.98 152 11 LEU A 30 ? ? -132.12 -55.43 153 11 ILE A 51 ? ? -97.41 -66.60 154 11 ALA A 52 ? ? 70.83 62.73 155 11 ASN A 53 ? ? -167.05 27.81 156 11 THR A 55 ? ? 36.25 52.88 157 11 SER A 56 ? ? -79.65 35.63 158 11 ASP A 60 ? ? -179.87 61.27 159 11 PRO A 61 ? ? -69.78 -169.98 160 11 ALA A 71 ? ? 160.90 131.40 161 11 ALA A 112 ? ? 178.11 33.08 162 11 ASP A 119 ? ? 171.76 176.17 163 11 TYR A 120 ? ? -154.09 24.29 164 11 HIS A 121 ? ? -101.15 -65.78 165 12 PHE A 3 ? ? -64.09 -169.21 166 12 LEU A 30 ? ? -140.11 26.13 167 12 ILE A 51 ? ? -98.24 -63.67 168 12 ALA A 52 ? ? 70.34 57.10 169 12 ASN A 53 ? ? -163.84 26.94 170 12 THR A 55 ? ? 35.80 80.55 171 12 LYS A 59 ? ? -138.53 -41.30 172 12 ASP A 60 ? ? -172.67 62.77 173 12 PRO A 61 ? ? -69.77 -169.86 174 12 SER A 62 ? ? -116.93 -167.85 175 12 SER A 64 ? ? -111.90 -70.36 176 12 ALA A 71 ? ? 160.73 132.06 177 12 ALA A 112 ? ? -179.99 33.35 178 12 TYR A 120 ? ? -152.91 -33.64 179 13 PRO A 18 ? ? -69.79 -178.10 180 13 LEU A 30 ? ? -140.70 26.49 181 13 ILE A 51 ? ? -98.94 -64.01 182 13 ALA A 52 ? ? 69.56 61.51 183 13 ASN A 53 ? ? -155.46 21.99 184 13 THR A 55 ? ? 36.60 49.42 185 13 ASP A 60 ? ? -174.63 57.68 186 13 PRO A 61 ? ? -69.77 -169.33 187 13 SER A 62 ? ? -103.27 -169.02 188 13 LYS A 63 ? ? -93.41 44.09 189 13 ALA A 71 ? ? 158.86 133.73 190 13 ALA A 112 ? ? 170.77 69.83 191 13 ASP A 119 ? ? 168.18 159.60 192 13 HIS A 121 ? ? -144.14 -43.28 193 14 PHE A 3 ? ? -65.14 -168.75 194 14 PRO A 18 ? ? -69.81 -179.72 195 14 LEU A 30 ? ? -140.33 27.37 196 14 ILE A 51 ? ? -97.72 -69.97 197 14 ASN A 53 ? ? -160.20 24.44 198 14 THR A 55 ? ? 36.82 49.38 199 14 LYS A 59 ? ? -138.07 -48.48 200 14 ASP A 60 ? ? -176.39 62.11 201 14 PRO A 61 ? ? -69.80 -169.75 202 14 ALA A 71 ? ? 161.30 133.02 203 14 ASP A 86 ? ? -67.03 91.55 204 14 ALA A 112 ? ? 178.41 34.77 205 14 TYR A 120 ? ? -153.54 -42.61 206 14 TYR A 129 ? ? 47.80 75.99 207 14 ASP A 130 ? ? -48.00 102.55 208 15 PHE A 3 ? ? -64.06 -167.58 209 15 PRO A 18 ? ? -69.74 -179.78 210 15 LEU A 30 ? ? -140.40 26.68 211 15 ILE A 51 ? ? -98.01 -65.26 212 15 ALA A 52 ? ? 71.62 56.60 213 15 ASN A 53 ? ? -165.36 26.92 214 15 THR A 55 ? ? 35.50 80.48 215 15 LYS A 59 ? ? -124.86 -53.59 216 15 ASP A 60 ? ? -165.85 61.48 217 15 PRO A 61 ? ? -69.79 -169.93 218 15 LYS A 63 ? ? -92.62 37.58 219 15 ALA A 71 ? ? 159.05 133.65 220 15 ALA A 112 ? ? 179.43 34.22 221 15 ALA A 116 ? ? -130.66 -38.64 222 15 ASP A 119 ? ? 168.90 167.17 223 15 TYR A 120 ? ? -155.17 39.15 224 16 PHE A 3 ? ? -64.41 -168.21 225 16 PRO A 18 ? ? -69.81 -177.52 226 16 LEU A 30 ? ? -140.09 26.01 227 16 ILE A 51 ? ? -98.22 -65.62 228 16 ALA A 52 ? ? 70.29 61.55 229 16 ASN A 53 ? ? -154.69 22.73 230 16 THR A 55 ? ? 36.66 48.53 231 16 ASP A 60 ? ? -176.35 60.95 232 16 PRO A 61 ? ? -69.83 -169.74 233 16 SER A 62 ? ? -123.95 -168.78 234 16 ALA A 71 ? ? 158.16 133.69 235 16 ALA A 112 ? ? 177.66 31.25 236 16 ASP A 119 ? ? 175.76 157.07 237 16 HIS A 121 ? ? -179.19 -47.93 238 16 ASP A 130 ? ? 33.26 48.66 239 17 PHE A 3 ? ? -65.30 -169.19 240 17 LEU A 30 ? ? -140.06 26.98 241 17 ILE A 51 ? ? -97.95 -64.94 242 17 ALA A 52 ? ? 70.74 55.51 243 17 ASN A 53 ? ? -164.32 26.87 244 17 THR A 55 ? ? 35.83 81.05 245 17 ASP A 60 ? ? 179.69 60.13 246 17 PRO A 61 ? ? -69.84 -169.78 247 17 LYS A 63 ? ? -89.20 47.41 248 17 ALA A 71 ? ? 161.10 132.76 249 17 ASP A 86 ? ? -65.79 88.41 250 17 ALA A 112 ? ? 177.64 33.00 251 17 ALA A 116 ? ? -131.71 -37.00 252 17 ASP A 119 ? ? 174.33 149.48 253 17 ASP A 122 ? ? -151.51 -36.07 254 17 TYR A 129 ? ? 47.33 71.71 255 17 ASP A 130 ? ? -40.68 102.57 256 18 PHE A 3 ? ? -63.85 -167.80 257 18 PRO A 18 ? ? -69.82 -179.05 258 18 LEU A 30 ? ? -140.27 25.96 259 18 ILE A 51 ? ? -97.97 -61.46 260 18 ALA A 52 ? ? 72.66 56.47 261 18 ASN A 53 ? ? -151.89 21.67 262 18 THR A 55 ? ? 36.67 49.66 263 18 LYS A 59 ? ? -93.53 -75.11 264 18 ASP A 60 ? ? -163.81 55.81 265 18 PRO A 61 ? ? -69.78 -169.46 266 18 SER A 62 ? ? -78.93 -164.81 267 18 ALA A 71 ? ? 160.33 132.63 268 18 ASP A 86 ? ? -67.93 88.67 269 18 ALA A 112 ? ? 171.88 68.97 270 18 ASP A 119 ? ? 166.81 155.08 271 18 HIS A 121 ? ? -145.84 -42.44 272 19 PHE A 3 ? ? -64.82 -168.71 273 19 PRO A 18 ? ? -69.72 -179.76 274 19 LEU A 30 ? ? -131.53 -55.76 275 19 ILE A 51 ? ? -96.93 -67.66 276 19 ASN A 53 ? ? -158.19 23.89 277 19 THR A 55 ? ? 36.70 48.63 278 19 ASP A 60 ? ? -176.49 61.71 279 19 PRO A 61 ? ? -69.71 -169.46 280 19 SER A 62 ? ? -104.75 -166.99 281 19 LYS A 63 ? ? -92.53 38.66 282 19 ALA A 71 ? ? 159.46 133.30 283 19 ASP A 86 ? ? -68.33 90.58 284 19 ALA A 112 ? ? -179.47 34.30 285 19 ASP A 119 ? ? 179.96 167.62 286 19 TYR A 120 ? ? -154.17 -40.45 287 19 ASP A 122 ? ? 76.85 -24.35 288 20 PHE A 3 ? ? -65.25 -168.25 289 20 PRO A 18 ? ? -69.68 -179.77 290 20 LEU A 30 ? ? -140.80 25.63 291 20 ASN A 50 ? ? -70.15 -72.32 292 20 ASN A 53 ? ? -157.86 24.38 293 20 THR A 55 ? ? 36.26 81.31 294 20 ASP A 60 ? ? 174.45 -57.15 295 20 SER A 62 ? ? -47.48 104.58 296 20 ALA A 71 ? ? 160.67 132.54 297 20 ASP A 86 ? ? -66.16 86.67 298 20 ALA A 112 ? ? 174.85 32.51 299 20 TYR A 120 ? ? -154.04 -37.20 300 20 ASP A 130 ? ? 32.69 47.03 # _pdbx_audit_support.funding_organization 'Russian Science Foundation' _pdbx_audit_support.country 'Russian Federation' _pdbx_audit_support.grant_number 23-24-00210 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? 2 ZN ? ? ZN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'CALCIUM ION' CA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ;https://doi.org/10.1107/S0907444908007890 and https://doi.org/10.1039/c9mt00020h ; #