data_8PDT # _entry.id 8PDT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PDT pdb_00008pdt 10.2210/pdb8pdt/pdb WWPDB D_1292131128 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Same protein, no ligand' 8C3X unspecified PDB 'Same protein, soaked with hexamannuronic acid' 8PC8 unspecified PDB 'Same protein, soaked with pentamannuronic acid' 8PC3 unspecified PDB 'Same protein, soaked with tetramannuronic acid' 8PCX unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8PDT _pdbx_database_status.recvd_initial_deposition_date 2023-06-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Wilknes, C.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0001-7692-067X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with dimannuronic acid' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Wilknes, C.' _citation_author.ordinal 1 _citation_author.identifier_ORCID 0000-0001-7692-067X # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8PDT _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.710 _cell.length_a_esd ? _cell.length_b 59.900 _cell.length_b_esd ? _cell.length_c 88.960 _cell.length_c_esd ? _cell.volume 222260.244 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8PDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alginate lyase' 25544.244 1 ? ? ? ? 2 branched man 'beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid' 370.263 1 ? ? ? ? 3 branched man 'beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid' 370.263 1 ? ? ? ? 4 water nat water 18.015 306 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EFLTAVSSIDTFLPVLNEAKLQWPTSALAASSEELLGGYVGSQFYLQDGKYMQFQIAGSSNRCELRQMIPDGGSEIGWAV DDGTTHTATSSIVVPEQVDGVEEVTIMQIHSGEAPQLRISWIRSKSLDGVAYEDFIMSTVRIGTGDSSDNFVKTHLADRT AGAMSFQIDVKDSKLTITVNGNVVVNGQDLSFWDGTDSCYFKAGAYNNNPTSESATARIKFAALAWVDHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;EFLTAVSSIDTFLPVLNEAKLQWPTSALAASSEELLGGYVGSQFYLQDGKYMQFQIAGSSNRCELRQMIPDGGSEIGWAV DDGTTHTATSSIVVPEQVDGVEEVTIMQIHSGEAPQLRISWIRSKSLDGVAYEDFIMSTVRIGTGDSSDNFVKTHLADRT AGAMSFQIDVKDSKLTITVNGNVVVNGQDLSFWDGTDSCYFKAGAYNNNPTSESATARIKFAALAWVDHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PHE n 1 3 LEU n 1 4 THR n 1 5 ALA n 1 6 VAL n 1 7 SER n 1 8 SER n 1 9 ILE n 1 10 ASP n 1 11 THR n 1 12 PHE n 1 13 LEU n 1 14 PRO n 1 15 VAL n 1 16 LEU n 1 17 ASN n 1 18 GLU n 1 19 ALA n 1 20 LYS n 1 21 LEU n 1 22 GLN n 1 23 TRP n 1 24 PRO n 1 25 THR n 1 26 SER n 1 27 ALA n 1 28 LEU n 1 29 ALA n 1 30 ALA n 1 31 SER n 1 32 SER n 1 33 GLU n 1 34 GLU n 1 35 LEU n 1 36 LEU n 1 37 GLY n 1 38 GLY n 1 39 TYR n 1 40 VAL n 1 41 GLY n 1 42 SER n 1 43 GLN n 1 44 PHE n 1 45 TYR n 1 46 LEU n 1 47 GLN n 1 48 ASP n 1 49 GLY n 1 50 LYS n 1 51 TYR n 1 52 MET n 1 53 GLN n 1 54 PHE n 1 55 GLN n 1 56 ILE n 1 57 ALA n 1 58 GLY n 1 59 SER n 1 60 SER n 1 61 ASN n 1 62 ARG n 1 63 CYS n 1 64 GLU n 1 65 LEU n 1 66 ARG n 1 67 GLN n 1 68 MET n 1 69 ILE n 1 70 PRO n 1 71 ASP n 1 72 GLY n 1 73 GLY n 1 74 SER n 1 75 GLU n 1 76 ILE n 1 77 GLY n 1 78 TRP n 1 79 ALA n 1 80 VAL n 1 81 ASP n 1 82 ASP n 1 83 GLY n 1 84 THR n 1 85 THR n 1 86 HIS n 1 87 THR n 1 88 ALA n 1 89 THR n 1 90 SER n 1 91 SER n 1 92 ILE n 1 93 VAL n 1 94 VAL n 1 95 PRO n 1 96 GLU n 1 97 GLN n 1 98 VAL n 1 99 ASP n 1 100 GLY n 1 101 VAL n 1 102 GLU n 1 103 GLU n 1 104 VAL n 1 105 THR n 1 106 ILE n 1 107 MET n 1 108 GLN n 1 109 ILE n 1 110 HIS n 1 111 SER n 1 112 GLY n 1 113 GLU n 1 114 ALA n 1 115 PRO n 1 116 GLN n 1 117 LEU n 1 118 ARG n 1 119 ILE n 1 120 SER n 1 121 TRP n 1 122 ILE n 1 123 ARG n 1 124 SER n 1 125 LYS n 1 126 SER n 1 127 LEU n 1 128 ASP n 1 129 GLY n 1 130 VAL n 1 131 ALA n 1 132 TYR n 1 133 GLU n 1 134 ASP n 1 135 PHE n 1 136 ILE n 1 137 MET n 1 138 SER n 1 139 THR n 1 140 VAL n 1 141 ARG n 1 142 ILE n 1 143 GLY n 1 144 THR n 1 145 GLY n 1 146 ASP n 1 147 SER n 1 148 SER n 1 149 ASP n 1 150 ASN n 1 151 PHE n 1 152 VAL n 1 153 LYS n 1 154 THR n 1 155 HIS n 1 156 LEU n 1 157 ALA n 1 158 ASP n 1 159 ARG n 1 160 THR n 1 161 ALA n 1 162 GLY n 1 163 ALA n 1 164 MET n 1 165 SER n 1 166 PHE n 1 167 GLN n 1 168 ILE n 1 169 ASP n 1 170 VAL n 1 171 LYS n 1 172 ASP n 1 173 SER n 1 174 LYS n 1 175 LEU n 1 176 THR n 1 177 ILE n 1 178 THR n 1 179 VAL n 1 180 ASN n 1 181 GLY n 1 182 ASN n 1 183 VAL n 1 184 VAL n 1 185 VAL n 1 186 ASN n 1 187 GLY n 1 188 GLN n 1 189 ASP n 1 190 LEU n 1 191 SER n 1 192 PHE n 1 193 TRP n 1 194 ASP n 1 195 GLY n 1 196 THR n 1 197 ASP n 1 198 SER n 1 199 CYS n 1 200 TYR n 1 201 PHE n 1 202 LYS n 1 203 ALA n 1 204 GLY n 1 205 ALA n 1 206 TYR n 1 207 ASN n 1 208 ASN n 1 209 ASN n 1 210 PRO n 1 211 THR n 1 212 SER n 1 213 GLU n 1 214 SER n 1 215 ALA n 1 216 THR n 1 217 ALA n 1 218 ARG n 1 219 ILE n 1 220 LYS n 1 221 PHE n 1 222 ALA n 1 223 ALA n 1 224 LEU n 1 225 ALA n 1 226 TRP n 1 227 VAL n 1 228 ASP n 1 229 HIS n 1 230 HIS n 1 231 HIS n 1 232 HIS n 1 233 HIS n 1 234 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 234 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PsAlg7C _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Paradendryphiella salina' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 179392 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Komagataella pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A7I9C8Z1_9PLEO _struct_ref.pdbx_db_accession A0A7I9C8Z1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LTAVSSIDTFLPVLNEAKLQWPTSALAASSEELLGGYVGSQFYLQDGKYMQFQIAGSSNRCELRQMIPDGGSEIGWAVDD GTTHTATSSIVVPEQVDGVEEVTIMQIHSGEAPQLRISWIRSKSLDGVAYEDFIMSTVRIGTGDSSDNFVKTHLADRTAG AMSFQIDVKDSKLTITVNGNVVVNGQDLSFWDGTDSCYFKAGAYNNNPTSESATARIKFAALAW ; _struct_ref.pdbx_align_begin 17 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8PDT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 226 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A7I9C8Z1 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 240 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 240 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8PDT GLU A 1 ? UNP A0A7I9C8Z1 ? ? 'expression tag' -1 1 1 8PDT PHE A 2 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 0 2 1 8PDT VAL A 227 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 241 3 1 8PDT ASP A 228 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 242 4 1 8PDT HIS A 229 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 243 5 1 8PDT HIS A 230 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 244 6 1 8PDT HIS A 231 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 245 7 1 8PDT HIS A 232 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 246 8 1 8PDT HIS A 233 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 247 9 1 8PDT HIS A 234 ? UNP A0A7I9C8Z1 ? ? 'expression tag' 248 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEM 'D-saccharide, beta linking' . 'beta-D-mannopyranuronic acid' 'beta-D-mannuronic acid; D-mannuronic acid; mannuronic acid; (2S,3S,4S,5S,6R)-3,4,5,6-tetrahydroxyoxane-2-carboxylic acid' 'C6 H10 O7' 194.139 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LGU 'L-saccharide, alpha linking' . 'alpha-L-gulopyranuronic acid' 'alpha-L-guluronic acid; L-guluronic acid; guluronic acid; ALPHA-L-GULURONATE' 'C6 H10 O7' 194.139 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAV 'D-saccharide, alpha linking' . 'alpha-D-mannopyranuronic acid' 'alpha-D-mannuronic acid; D-mannuronic acid; mannuronic acid' 'C6 H10 O7' 194.139 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PDT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG3350, 0.1M Bis-Tris pH 5.5, 0.3M NaCl' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-08-22 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.799 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'MAX IV BEAMLINE BioMAX' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.799 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BioMAX _diffrn_source.pdbx_synchrotron_site 'MAX IV' # _reflns.B_iso_Wilson_estimate 13.33 _reflns.entry_id 8PDT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.09 _reflns.d_resolution_low 44.88 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 92201 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.16 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.77 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.09 _reflns_shell.d_res_low 1.16 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 14459 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.46 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 18.07 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8PDT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.09 _refine.ls_d_res_low 37.77 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 92189 _refine.ls_number_reflns_R_free 2101 _refine.ls_number_reflns_R_work 90088 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.35 _refine.ls_percent_reflns_R_free 2.28 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1497 _refine.ls_R_factor_R_free 0.1774 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1491 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.7100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1232 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.09 _refine_hist.d_res_low 37.77 _refine_hist.number_atoms_solvent 306 _refine_hist.number_atoms_total 2124 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1768 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0062 ? 1984 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9536 ? 2722 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0810 ? 311 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0080 ? 357 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.2598 ? 698 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.09 1.11 . . 133 5703 94.76 . . . . 0.3163 . . . . . . . . . . . 0.3409 'X-RAY DIFFRACTION' 1.11 1.14 . . 138 5893 97.68 . . . . 0.2834 . . . . . . . . . . . 0.3216 'X-RAY DIFFRACTION' 1.14 1.17 . . 138 5918 97.65 . . . . 0.2539 . . . . . . . . . . . 0.2992 'X-RAY DIFFRACTION' 1.17 1.21 . . 136 5862 97.70 . . . . 0.2285 . . . . . . . . . . . 0.2554 'X-RAY DIFFRACTION' 1.21 1.25 . . 139 5942 97.97 . . . . 0.2084 . . . . . . . . . . . 0.2464 'X-RAY DIFFRACTION' 1.25 1.29 . . 138 5950 98.54 . . . . 0.1895 . . . . . . . . . . . 0.2273 'X-RAY DIFFRACTION' 1.29 1.34 . . 140 5985 98.46 . . . . 0.1693 . . . . . . . . . . . 0.2320 'X-RAY DIFFRACTION' 1.34 1.40 . . 139 5981 98.61 . . . . 0.1597 . . . . . . . . . . . 0.1736 'X-RAY DIFFRACTION' 1.40 1.48 . . 140 5991 98.74 . . . . 0.1477 . . . . . . . . . . . 0.1781 'X-RAY DIFFRACTION' 1.48 1.57 . . 140 6016 98.89 . . . . 0.1338 . . . . . . . . . . . 0.1774 'X-RAY DIFFRACTION' 1.57 1.69 . . 141 6042 98.39 . . . . 0.1389 . . . . . . . . . . . 0.1757 'X-RAY DIFFRACTION' 1.69 1.86 . . 142 6072 99.34 . . . . 0.1405 . . . . . . . . . . . 0.1706 'X-RAY DIFFRACTION' 1.86 2.13 . . 143 6137 99.43 . . . . 0.1375 . . . . . . . . . . . 0.1671 'X-RAY DIFFRACTION' 2.13 2.69 . . 144 6165 99.50 . . . . 0.1357 . . . . . . . . . . . 0.1648 'X-RAY DIFFRACTION' 2.69 37.77 . . 150 6431 99.41 . . . . 0.1313 . . . . . . . . . . . 0.1510 # _struct.entry_id 8PDT _struct.title 'Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with dimannuronic acid' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PDT _struct_keywords.text 'Alginate lyase, complex, beta-jelly roll, LYASE' _struct_keywords.pdbx_keywords LYASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 5 ? ILE A 9 ? ALA A 19 ILE A 23 5 ? 5 HELX_P HELX_P2 AA2 PHE A 12 ? ASN A 17 ? PHE A 26 ASN A 31 1 ? 6 HELX_P HELX_P3 AA3 SER A 31 ? GLY A 37 ? SER A 45 GLY A 51 1 ? 7 HELX_P HELX_P4 AA4 SER A 147 ? ASP A 149 ? SER A 161 ASP A 163 5 ? 3 HELX_P HELX_P5 AA5 SER A 191 ? ASP A 194 ? SER A 205 ASP A 208 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B MAV . O4 ? ? ? 1_555 B BEM . C1 ? ? B MAV 1 B BEM 2 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale2 covale both ? C LGU . O4 ? ? ? 1_555 C BEM . C1 ? ? C LGU 1 C BEM 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 37 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 38 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.58 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 28 ? ALA A 30 ? LEU A 42 ALA A 44 AA1 2 ALA A 19 ? GLN A 22 ? ALA A 33 GLN A 36 AA1 3 ARG A 62 ? GLN A 67 ? ARG A 76 GLN A 81 AA1 4 TYR A 200 ? ASN A 208 ? TYR A 214 ASN A 222 AA1 5 GLU A 103 ? HIS A 110 ? GLU A 117 HIS A 124 AA1 6 PRO A 115 ? LEU A 127 ? PRO A 129 LEU A 141 AA1 7 VAL A 130 ? ARG A 141 ? VAL A 144 ARG A 155 AA1 8 PHE A 151 ? ASP A 158 ? PHE A 165 ASP A 172 AA2 1 PHE A 44 ? GLN A 47 ? PHE A 58 GLN A 61 AA2 2 TYR A 51 ? ALA A 57 ? TYR A 65 ALA A 71 AA2 3 THR A 216 ? ASP A 228 ? THR A 230 ASP A 242 AA2 4 HIS A 86 ? VAL A 93 ? HIS A 100 VAL A 107 AA2 5 MET A 164 ? LYS A 171 ? MET A 178 LYS A 185 AA2 6 LYS A 174 ? VAL A 179 ? LYS A 188 VAL A 193 AA2 7 ASN A 182 ? ASP A 189 ? ASN A 196 ASP A 203 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ALA A 29 ? O ALA A 43 N LEU A 21 ? N LEU A 35 AA1 2 3 N GLN A 22 ? N GLN A 36 O GLU A 64 ? O GLU A 78 AA1 3 4 N LEU A 65 ? N LEU A 79 O ALA A 203 ? O ALA A 217 AA1 4 5 O TYR A 206 ? O TYR A 220 N THR A 105 ? N THR A 119 AA1 5 6 N MET A 107 ? N MET A 121 O ILE A 119 ? O ILE A 133 AA1 6 7 N SER A 120 ? N SER A 134 O MET A 137 ? O MET A 151 AA1 7 8 N ILE A 136 ? N ILE A 150 O ALA A 157 ? O ALA A 171 AA2 1 2 N GLN A 47 ? N GLN A 61 O TYR A 51 ? O TYR A 65 AA2 2 3 N ILE A 56 ? N ILE A 70 O ALA A 217 ? O ALA A 231 AA2 3 4 O LYS A 220 ? O LYS A 234 N VAL A 93 ? N VAL A 107 AA2 4 5 N ILE A 92 ? N ILE A 106 O MET A 164 ? O MET A 178 AA2 5 6 N ASP A 169 ? N ASP A 183 O THR A 176 ? O THR A 190 AA2 6 7 N VAL A 179 ? N VAL A 193 O ASN A 182 ? O ASN A 196 # _atom_sites.entry_id 8PDT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023975 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016694 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011241 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 -1 ? ? ? A . n A 1 2 PHE 2 0 0 PHE PHE A . n A 1 3 LEU 3 17 17 LEU LEU A . n A 1 4 THR 4 18 18 THR THR A . n A 1 5 ALA 5 19 19 ALA ALA A . n A 1 6 VAL 6 20 20 VAL VAL A . n A 1 7 SER 7 21 21 SER SER A . n A 1 8 SER 8 22 22 SER SER A . n A 1 9 ILE 9 23 23 ILE ILE A . n A 1 10 ASP 10 24 24 ASP ASP A . n A 1 11 THR 11 25 25 THR THR A . n A 1 12 PHE 12 26 26 PHE PHE A . n A 1 13 LEU 13 27 27 LEU LEU A . n A 1 14 PRO 14 28 28 PRO PRO A . n A 1 15 VAL 15 29 29 VAL VAL A . n A 1 16 LEU 16 30 30 LEU LEU A . n A 1 17 ASN 17 31 31 ASN ASN A . n A 1 18 GLU 18 32 32 GLU GLU A . n A 1 19 ALA 19 33 33 ALA ALA A . n A 1 20 LYS 20 34 34 LYS LYS A . n A 1 21 LEU 21 35 35 LEU LEU A . n A 1 22 GLN 22 36 36 GLN GLN A . n A 1 23 TRP 23 37 37 TRP TRP A . n A 1 24 PRO 24 38 38 PRO PRO A . n A 1 25 THR 25 39 39 THR THR A . n A 1 26 SER 26 40 40 SER SER A . n A 1 27 ALA 27 41 41 ALA ALA A . n A 1 28 LEU 28 42 42 LEU LEU A . n A 1 29 ALA 29 43 43 ALA ALA A . n A 1 30 ALA 30 44 44 ALA ALA A . n A 1 31 SER 31 45 45 SER SER A . n A 1 32 SER 32 46 46 SER SER A . n A 1 33 GLU 33 47 47 GLU GLU A . n A 1 34 GLU 34 48 48 GLU GLU A . n A 1 35 LEU 35 49 49 LEU LEU A . n A 1 36 LEU 36 50 50 LEU LEU A . n A 1 37 GLY 37 51 51 GLY GLY A . n A 1 38 GLY 38 52 52 GLY GLY A . n A 1 39 TYR 39 53 53 TYR TYR A . n A 1 40 VAL 40 54 54 VAL VAL A . n A 1 41 GLY 41 55 55 GLY GLY A . n A 1 42 SER 42 56 56 SER SER A . n A 1 43 GLN 43 57 57 GLN GLN A . n A 1 44 PHE 44 58 58 PHE PHE A . n A 1 45 TYR 45 59 59 TYR TYR A . n A 1 46 LEU 46 60 60 LEU LEU A . n A 1 47 GLN 47 61 61 GLN GLN A . n A 1 48 ASP 48 62 62 ASP ASP A . n A 1 49 GLY 49 63 63 GLY GLY A . n A 1 50 LYS 50 64 64 LYS LYS A . n A 1 51 TYR 51 65 65 TYR TYR A . n A 1 52 MET 52 66 66 MET MET A . n A 1 53 GLN 53 67 67 GLN GLN A . n A 1 54 PHE 54 68 68 PHE PHE A . n A 1 55 GLN 55 69 69 GLN GLN A . n A 1 56 ILE 56 70 70 ILE ILE A . n A 1 57 ALA 57 71 71 ALA ALA A . n A 1 58 GLY 58 72 72 GLY GLY A . n A 1 59 SER 59 73 73 SER SER A . n A 1 60 SER 60 74 74 SER SER A . n A 1 61 ASN 61 75 75 ASN ASN A . n A 1 62 ARG 62 76 76 ARG ARG A . n A 1 63 CYS 63 77 77 CYS CYS A . n A 1 64 GLU 64 78 78 GLU GLU A . n A 1 65 LEU 65 79 79 LEU LEU A . n A 1 66 ARG 66 80 80 ARG ARG A . n A 1 67 GLN 67 81 81 GLN GLN A . n A 1 68 MET 68 82 82 MET MET A . n A 1 69 ILE 69 83 83 ILE ILE A . n A 1 70 PRO 70 84 84 PRO PRO A . n A 1 71 ASP 71 85 85 ASP ASP A . n A 1 72 GLY 72 86 86 GLY GLY A . n A 1 73 GLY 73 87 87 GLY GLY A . n A 1 74 SER 74 88 88 SER SER A . n A 1 75 GLU 75 89 89 GLU GLU A . n A 1 76 ILE 76 90 90 ILE ILE A . n A 1 77 GLY 77 91 91 GLY GLY A . n A 1 78 TRP 78 92 92 TRP TRP A . n A 1 79 ALA 79 93 93 ALA ALA A . n A 1 80 VAL 80 94 94 VAL VAL A . n A 1 81 ASP 81 95 95 ASP ASP A . n A 1 82 ASP 82 96 96 ASP ASP A . n A 1 83 GLY 83 97 97 GLY GLY A . n A 1 84 THR 84 98 98 THR THR A . n A 1 85 THR 85 99 99 THR THR A . n A 1 86 HIS 86 100 100 HIS HIS A . n A 1 87 THR 87 101 101 THR THR A . n A 1 88 ALA 88 102 102 ALA ALA A . n A 1 89 THR 89 103 103 THR THR A . n A 1 90 SER 90 104 104 SER SER A . n A 1 91 SER 91 105 105 SER SER A . n A 1 92 ILE 92 106 106 ILE ILE A . n A 1 93 VAL 93 107 107 VAL VAL A . n A 1 94 VAL 94 108 108 VAL VAL A . n A 1 95 PRO 95 109 109 PRO PRO A . n A 1 96 GLU 96 110 110 GLU GLU A . n A 1 97 GLN 97 111 111 GLN GLN A . n A 1 98 VAL 98 112 112 VAL VAL A . n A 1 99 ASP 99 113 113 ASP ASP A . n A 1 100 GLY 100 114 114 GLY GLY A . n A 1 101 VAL 101 115 115 VAL VAL A . n A 1 102 GLU 102 116 116 GLU GLU A . n A 1 103 GLU 103 117 117 GLU GLU A . n A 1 104 VAL 104 118 118 VAL VAL A . n A 1 105 THR 105 119 119 THR THR A . n A 1 106 ILE 106 120 120 ILE ILE A . n A 1 107 MET 107 121 121 MET MET A . n A 1 108 GLN 108 122 122 GLN GLN A . n A 1 109 ILE 109 123 123 ILE ILE A . n A 1 110 HIS 110 124 124 HIS HIS A . n A 1 111 SER 111 125 125 SER SER A . n A 1 112 GLY 112 126 126 GLY GLY A . n A 1 113 GLU 113 127 127 GLU GLU A . n A 1 114 ALA 114 128 128 ALA ALA A . n A 1 115 PRO 115 129 129 PRO PRO A . n A 1 116 GLN 116 130 130 GLN GLN A . n A 1 117 LEU 117 131 131 LEU LEU A . n A 1 118 ARG 118 132 132 ARG ARG A . n A 1 119 ILE 119 133 133 ILE ILE A . n A 1 120 SER 120 134 134 SER SER A . n A 1 121 TRP 121 135 135 TRP TRP A . n A 1 122 ILE 122 136 136 ILE ILE A . n A 1 123 ARG 123 137 137 ARG ARG A . n A 1 124 SER 124 138 138 SER SER A . n A 1 125 LYS 125 139 139 LYS LYS A . n A 1 126 SER 126 140 140 SER SER A . n A 1 127 LEU 127 141 141 LEU LEU A . n A 1 128 ASP 128 142 142 ASP ASP A . n A 1 129 GLY 129 143 143 GLY GLY A . n A 1 130 VAL 130 144 144 VAL VAL A . n A 1 131 ALA 131 145 145 ALA ALA A . n A 1 132 TYR 132 146 146 TYR TYR A . n A 1 133 GLU 133 147 147 GLU GLU A . n A 1 134 ASP 134 148 148 ASP ASP A . n A 1 135 PHE 135 149 149 PHE PHE A . n A 1 136 ILE 136 150 150 ILE ILE A . n A 1 137 MET 137 151 151 MET MET A . n A 1 138 SER 138 152 152 SER SER A . n A 1 139 THR 139 153 153 THR THR A . n A 1 140 VAL 140 154 154 VAL VAL A . n A 1 141 ARG 141 155 155 ARG ARG A . n A 1 142 ILE 142 156 156 ILE ILE A . n A 1 143 GLY 143 157 157 GLY GLY A . n A 1 144 THR 144 158 158 THR THR A . n A 1 145 GLY 145 159 159 GLY GLY A . n A 1 146 ASP 146 160 160 ASP ASP A . n A 1 147 SER 147 161 161 SER SER A . n A 1 148 SER 148 162 162 SER SER A . n A 1 149 ASP 149 163 163 ASP ASP A . n A 1 150 ASN 150 164 164 ASN ASN A . n A 1 151 PHE 151 165 165 PHE PHE A . n A 1 152 VAL 152 166 166 VAL VAL A . n A 1 153 LYS 153 167 167 LYS LYS A . n A 1 154 THR 154 168 168 THR THR A . n A 1 155 HIS 155 169 169 HIS HIS A . n A 1 156 LEU 156 170 170 LEU LEU A . n A 1 157 ALA 157 171 171 ALA ALA A . n A 1 158 ASP 158 172 172 ASP ASP A . n A 1 159 ARG 159 173 173 ARG ARG A . n A 1 160 THR 160 174 174 THR THR A . n A 1 161 ALA 161 175 175 ALA ALA A . n A 1 162 GLY 162 176 176 GLY GLY A . n A 1 163 ALA 163 177 177 ALA ALA A . n A 1 164 MET 164 178 178 MET MET A . n A 1 165 SER 165 179 179 SER SER A . n A 1 166 PHE 166 180 180 PHE PHE A . n A 1 167 GLN 167 181 181 GLN GLN A . n A 1 168 ILE 168 182 182 ILE ILE A . n A 1 169 ASP 169 183 183 ASP ASP A . n A 1 170 VAL 170 184 184 VAL VAL A . n A 1 171 LYS 171 185 185 LYS LYS A . n A 1 172 ASP 172 186 186 ASP ASP A . n A 1 173 SER 173 187 187 SER SER A . n A 1 174 LYS 174 188 188 LYS LYS A . n A 1 175 LEU 175 189 189 LEU LEU A . n A 1 176 THR 176 190 190 THR THR A . n A 1 177 ILE 177 191 191 ILE ILE A . n A 1 178 THR 178 192 192 THR THR A . n A 1 179 VAL 179 193 193 VAL VAL A . n A 1 180 ASN 180 194 194 ASN ASN A . n A 1 181 GLY 181 195 195 GLY GLY A . n A 1 182 ASN 182 196 196 ASN ASN A . n A 1 183 VAL 183 197 197 VAL VAL A . n A 1 184 VAL 184 198 198 VAL VAL A . n A 1 185 VAL 185 199 199 VAL VAL A . n A 1 186 ASN 186 200 200 ASN ASN A . n A 1 187 GLY 187 201 201 GLY GLY A . n A 1 188 GLN 188 202 202 GLN GLN A . n A 1 189 ASP 189 203 203 ASP ASP A . n A 1 190 LEU 190 204 204 LEU LEU A . n A 1 191 SER 191 205 205 SER SER A . n A 1 192 PHE 192 206 206 PHE PHE A . n A 1 193 TRP 193 207 207 TRP TRP A . n A 1 194 ASP 194 208 208 ASP ASP A . n A 1 195 GLY 195 209 209 GLY GLY A . n A 1 196 THR 196 210 210 THR THR A . n A 1 197 ASP 197 211 211 ASP ASP A . n A 1 198 SER 198 212 212 SER SER A . n A 1 199 CYS 199 213 213 CYS CYS A . n A 1 200 TYR 200 214 214 TYR TYR A . n A 1 201 PHE 201 215 215 PHE PHE A . n A 1 202 LYS 202 216 216 LYS LYS A . n A 1 203 ALA 203 217 217 ALA ALA A . n A 1 204 GLY 204 218 218 GLY GLY A . n A 1 205 ALA 205 219 219 ALA ALA A . n A 1 206 TYR 206 220 220 TYR TYR A . n A 1 207 ASN 207 221 221 ASN ASN A . n A 1 208 ASN 208 222 222 ASN ASN A . n A 1 209 ASN 209 223 223 ASN ASN A . n A 1 210 PRO 210 224 224 PRO PRO A . n A 1 211 THR 211 225 225 THR THR A . n A 1 212 SER 212 226 226 SER SER A . n A 1 213 GLU 213 227 227 GLU GLU A . n A 1 214 SER 214 228 228 SER SER A . n A 1 215 ALA 215 229 229 ALA ALA A . n A 1 216 THR 216 230 230 THR THR A . n A 1 217 ALA 217 231 231 ALA ALA A . n A 1 218 ARG 218 232 232 ARG ARG A . n A 1 219 ILE 219 233 233 ILE ILE A . n A 1 220 LYS 220 234 234 LYS LYS A . n A 1 221 PHE 221 235 235 PHE PHE A . n A 1 222 ALA 222 236 236 ALA ALA A . n A 1 223 ALA 223 237 237 ALA ALA A . n A 1 224 LEU 224 238 238 LEU LEU A . n A 1 225 ALA 225 239 239 ALA ALA A . n A 1 226 TRP 226 240 240 TRP TRP A . n A 1 227 VAL 227 241 241 VAL VAL A . n A 1 228 ASP 228 242 242 ASP ASP A . n A 1 229 HIS 229 243 243 HIS HIS A . n A 1 230 HIS 230 244 244 HIS HIS A . n A 1 231 HIS 231 245 245 HIS HIS A . n A 1 232 HIS 232 246 246 HIS HIS A . n A 1 233 HIS 233 247 ? ? ? A . n A 1 234 HIS 234 248 ? ? ? A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email pdb@casperwilkens.dk _pdbx_contact_author.name_first Casper _pdbx_contact_author.name_last Wilkens _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7692-067X # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 301 305 HOH HOH A . D 4 HOH 2 302 304 HOH HOH A . D 4 HOH 3 303 301 HOH HOH A . D 4 HOH 4 304 293 HOH HOH A . D 4 HOH 5 305 114 HOH HOH A . D 4 HOH 6 306 47 HOH HOH A . D 4 HOH 7 307 226 HOH HOH A . D 4 HOH 8 308 235 HOH HOH A . D 4 HOH 9 309 225 HOH HOH A . D 4 HOH 10 310 230 HOH HOH A . D 4 HOH 11 311 197 HOH HOH A . D 4 HOH 12 312 170 HOH HOH A . D 4 HOH 13 313 201 HOH HOH A . D 4 HOH 14 314 168 HOH HOH A . D 4 HOH 15 315 316 HOH HOH A . D 4 HOH 16 316 122 HOH HOH A . D 4 HOH 17 317 243 HOH HOH A . D 4 HOH 18 318 102 HOH HOH A . D 4 HOH 19 319 62 HOH HOH A . D 4 HOH 20 320 229 HOH HOH A . D 4 HOH 21 321 113 HOH HOH A . D 4 HOH 22 322 211 HOH HOH A . D 4 HOH 23 323 178 HOH HOH A . D 4 HOH 24 324 142 HOH HOH A . D 4 HOH 25 325 240 HOH HOH A . D 4 HOH 26 326 186 HOH HOH A . D 4 HOH 27 327 82 HOH HOH A . D 4 HOH 28 328 68 HOH HOH A . D 4 HOH 29 329 163 HOH HOH A . D 4 HOH 30 330 292 HOH HOH A . D 4 HOH 31 331 187 HOH HOH A . D 4 HOH 32 332 117 HOH HOH A . D 4 HOH 33 333 95 HOH HOH A . D 4 HOH 34 334 46 HOH HOH A . D 4 HOH 35 335 77 HOH HOH A . D 4 HOH 36 336 63 HOH HOH A . D 4 HOH 37 337 27 HOH HOH A . D 4 HOH 38 338 206 HOH HOH A . D 4 HOH 39 339 17 HOH HOH A . D 4 HOH 40 340 121 HOH HOH A . D 4 HOH 41 341 50 HOH HOH A . D 4 HOH 42 342 30 HOH HOH A . D 4 HOH 43 343 55 HOH HOH A . D 4 HOH 44 344 21 HOH HOH A . D 4 HOH 45 345 249 HOH HOH A . D 4 HOH 46 346 40 HOH HOH A . D 4 HOH 47 347 290 HOH HOH A . D 4 HOH 48 348 209 HOH HOH A . D 4 HOH 49 349 129 HOH HOH A . D 4 HOH 50 350 133 HOH HOH A . D 4 HOH 51 351 10 HOH HOH A . D 4 HOH 52 352 140 HOH HOH A . D 4 HOH 53 353 25 HOH HOH A . D 4 HOH 54 354 3 HOH HOH A . D 4 HOH 55 355 84 HOH HOH A . D 4 HOH 56 356 92 HOH HOH A . D 4 HOH 57 357 29 HOH HOH A . D 4 HOH 58 358 54 HOH HOH A . D 4 HOH 59 359 175 HOH HOH A . D 4 HOH 60 360 118 HOH HOH A . D 4 HOH 61 361 257 HOH HOH A . D 4 HOH 62 362 151 HOH HOH A . D 4 HOH 63 363 204 HOH HOH A . D 4 HOH 64 364 52 HOH HOH A . D 4 HOH 65 365 56 HOH HOH A . D 4 HOH 66 366 207 HOH HOH A . D 4 HOH 67 367 179 HOH HOH A . D 4 HOH 68 368 81 HOH HOH A . D 4 HOH 69 369 14 HOH HOH A . D 4 HOH 70 370 48 HOH HOH A . D 4 HOH 71 371 299 HOH HOH A . D 4 HOH 72 372 69 HOH HOH A . D 4 HOH 73 373 212 HOH HOH A . D 4 HOH 74 374 66 HOH HOH A . D 4 HOH 75 375 71 HOH HOH A . D 4 HOH 76 376 136 HOH HOH A . D 4 HOH 77 377 119 HOH HOH A . D 4 HOH 78 378 227 HOH HOH A . D 4 HOH 79 379 34 HOH HOH A . D 4 HOH 80 380 72 HOH HOH A . D 4 HOH 81 381 188 HOH HOH A . D 4 HOH 82 382 26 HOH HOH A . D 4 HOH 83 383 258 HOH HOH A . D 4 HOH 84 384 91 HOH HOH A . D 4 HOH 85 385 15 HOH HOH A . D 4 HOH 86 386 150 HOH HOH A . D 4 HOH 87 387 4 HOH HOH A . D 4 HOH 88 388 157 HOH HOH A . D 4 HOH 89 389 116 HOH HOH A . D 4 HOH 90 390 58 HOH HOH A . D 4 HOH 91 391 139 HOH HOH A . D 4 HOH 92 392 148 HOH HOH A . D 4 HOH 93 393 233 HOH HOH A . D 4 HOH 94 394 105 HOH HOH A . D 4 HOH 95 395 87 HOH HOH A . D 4 HOH 96 396 57 HOH HOH A . D 4 HOH 97 397 24 HOH HOH A . D 4 HOH 98 398 20 HOH HOH A . D 4 HOH 99 399 11 HOH HOH A . D 4 HOH 100 400 18 HOH HOH A . D 4 HOH 101 401 45 HOH HOH A . D 4 HOH 102 402 224 HOH HOH A . D 4 HOH 103 403 251 HOH HOH A . D 4 HOH 104 404 53 HOH HOH A . D 4 HOH 105 405 109 HOH HOH A . D 4 HOH 106 406 67 HOH HOH A . D 4 HOH 107 407 262 HOH HOH A . D 4 HOH 108 408 288 HOH HOH A . D 4 HOH 109 409 32 HOH HOH A . D 4 HOH 110 410 185 HOH HOH A . D 4 HOH 111 411 220 HOH HOH A . D 4 HOH 112 412 12 HOH HOH A . D 4 HOH 113 413 44 HOH HOH A . D 4 HOH 114 414 13 HOH HOH A . D 4 HOH 115 415 161 HOH HOH A . D 4 HOH 116 416 51 HOH HOH A . D 4 HOH 117 417 123 HOH HOH A . D 4 HOH 118 418 159 HOH HOH A . D 4 HOH 119 419 41 HOH HOH A . D 4 HOH 120 420 191 HOH HOH A . D 4 HOH 121 421 65 HOH HOH A . D 4 HOH 122 422 36 HOH HOH A . D 4 HOH 123 423 7 HOH HOH A . D 4 HOH 124 424 8 HOH HOH A . D 4 HOH 125 425 76 HOH HOH A . D 4 HOH 126 426 264 HOH HOH A . D 4 HOH 127 427 130 HOH HOH A . D 4 HOH 128 428 310 HOH HOH A . D 4 HOH 129 429 73 HOH HOH A . D 4 HOH 130 430 38 HOH HOH A . D 4 HOH 131 431 192 HOH HOH A . D 4 HOH 132 432 173 HOH HOH A . D 4 HOH 133 433 259 HOH HOH A . D 4 HOH 134 434 5 HOH HOH A . D 4 HOH 135 435 165 HOH HOH A . D 4 HOH 136 436 107 HOH HOH A . D 4 HOH 137 437 216 HOH HOH A . D 4 HOH 138 438 94 HOH HOH A . D 4 HOH 139 439 215 HOH HOH A . D 4 HOH 140 440 181 HOH HOH A . D 4 HOH 141 441 260 HOH HOH A . D 4 HOH 142 442 210 HOH HOH A . D 4 HOH 143 443 60 HOH HOH A . D 4 HOH 144 444 64 HOH HOH A . D 4 HOH 145 445 98 HOH HOH A . D 4 HOH 146 446 131 HOH HOH A . D 4 HOH 147 447 88 HOH HOH A . D 4 HOH 148 448 35 HOH HOH A . D 4 HOH 149 449 85 HOH HOH A . D 4 HOH 150 450 61 HOH HOH A . D 4 HOH 151 451 23 HOH HOH A . D 4 HOH 152 452 245 HOH HOH A . D 4 HOH 153 453 202 HOH HOH A . D 4 HOH 154 454 37 HOH HOH A . D 4 HOH 155 455 101 HOH HOH A . D 4 HOH 156 456 281 HOH HOH A . D 4 HOH 157 457 247 HOH HOH A . D 4 HOH 158 458 169 HOH HOH A . D 4 HOH 159 459 194 HOH HOH A . D 4 HOH 160 460 154 HOH HOH A . D 4 HOH 161 461 115 HOH HOH A . D 4 HOH 162 462 134 HOH HOH A . D 4 HOH 163 463 19 HOH HOH A . D 4 HOH 164 464 43 HOH HOH A . D 4 HOH 165 465 22 HOH HOH A . D 4 HOH 166 466 78 HOH HOH A . D 4 HOH 167 467 241 HOH HOH A . D 4 HOH 168 468 172 HOH HOH A . D 4 HOH 169 469 89 HOH HOH A . D 4 HOH 170 470 86 HOH HOH A . D 4 HOH 171 471 242 HOH HOH A . D 4 HOH 172 472 322 HOH HOH A . D 4 HOH 173 473 97 HOH HOH A . D 4 HOH 174 474 128 HOH HOH A . D 4 HOH 175 475 33 HOH HOH A . D 4 HOH 176 476 156 HOH HOH A . D 4 HOH 177 477 146 HOH HOH A . D 4 HOH 178 478 231 HOH HOH A . D 4 HOH 179 479 79 HOH HOH A . D 4 HOH 180 480 31 HOH HOH A . D 4 HOH 181 481 155 HOH HOH A . D 4 HOH 182 482 138 HOH HOH A . D 4 HOH 183 483 236 HOH HOH A . D 4 HOH 184 484 152 HOH HOH A . D 4 HOH 185 485 120 HOH HOH A . D 4 HOH 186 486 42 HOH HOH A . D 4 HOH 187 487 39 HOH HOH A . D 4 HOH 188 488 145 HOH HOH A . D 4 HOH 189 489 300 HOH HOH A . D 4 HOH 190 490 312 HOH HOH A . D 4 HOH 191 491 164 HOH HOH A . D 4 HOH 192 492 320 HOH HOH A . D 4 HOH 193 493 93 HOH HOH A . D 4 HOH 194 494 83 HOH HOH A . D 4 HOH 195 495 126 HOH HOH A . D 4 HOH 196 496 132 HOH HOH A . D 4 HOH 197 497 232 HOH HOH A . D 4 HOH 198 498 16 HOH HOH A . D 4 HOH 199 499 167 HOH HOH A . D 4 HOH 200 500 100 HOH HOH A . D 4 HOH 201 501 74 HOH HOH A . D 4 HOH 202 502 248 HOH HOH A . D 4 HOH 203 503 106 HOH HOH A . D 4 HOH 204 504 252 HOH HOH A . D 4 HOH 205 505 110 HOH HOH A . D 4 HOH 206 506 137 HOH HOH A . D 4 HOH 207 507 127 HOH HOH A . D 4 HOH 208 508 205 HOH HOH A . D 4 HOH 209 509 103 HOH HOH A . D 4 HOH 210 510 228 HOH HOH A . D 4 HOH 211 511 255 HOH HOH A . D 4 HOH 212 512 196 HOH HOH A . D 4 HOH 213 513 174 HOH HOH A . D 4 HOH 214 514 309 HOH HOH A . D 4 HOH 215 515 90 HOH HOH A . D 4 HOH 216 516 160 HOH HOH A . D 4 HOH 217 517 2 HOH HOH A . D 4 HOH 218 518 317 HOH HOH A . D 4 HOH 219 519 171 HOH HOH A . D 4 HOH 220 520 266 HOH HOH A . D 4 HOH 221 521 195 HOH HOH A . D 4 HOH 222 522 267 HOH HOH A . D 4 HOH 223 523 182 HOH HOH A . D 4 HOH 224 524 176 HOH HOH A . D 4 HOH 225 525 59 HOH HOH A . D 4 HOH 226 526 162 HOH HOH A . D 4 HOH 227 527 222 HOH HOH A . D 4 HOH 228 528 289 HOH HOH A . D 4 HOH 229 529 108 HOH HOH A . D 4 HOH 230 530 49 HOH HOH A . D 4 HOH 231 531 104 HOH HOH A . D 4 HOH 232 532 166 HOH HOH A . D 4 HOH 233 533 311 HOH HOH A . D 4 HOH 234 534 234 HOH HOH A . D 4 HOH 235 535 124 HOH HOH A . D 4 HOH 236 536 314 HOH HOH A . D 4 HOH 237 537 277 HOH HOH A . D 4 HOH 238 538 189 HOH HOH A . D 4 HOH 239 539 253 HOH HOH A . D 4 HOH 240 540 190 HOH HOH A . D 4 HOH 241 541 321 HOH HOH A . D 4 HOH 242 542 294 HOH HOH A . D 4 HOH 243 543 296 HOH HOH A . D 4 HOH 244 544 208 HOH HOH A . D 4 HOH 245 545 313 HOH HOH A . D 4 HOH 246 546 295 HOH HOH A . D 4 HOH 247 547 269 HOH HOH A . D 4 HOH 248 548 303 HOH HOH A . D 4 HOH 249 549 287 HOH HOH A . D 4 HOH 250 550 193 HOH HOH A . D 4 HOH 251 551 203 HOH HOH A . D 4 HOH 252 552 75 HOH HOH A . D 4 HOH 253 553 183 HOH HOH A . D 4 HOH 254 554 149 HOH HOH A . D 4 HOH 255 555 238 HOH HOH A . D 4 HOH 256 556 284 HOH HOH A . D 4 HOH 257 557 291 HOH HOH A . D 4 HOH 258 558 239 HOH HOH A . D 4 HOH 259 559 261 HOH HOH A . D 4 HOH 260 560 273 HOH HOH A . D 4 HOH 261 561 111 HOH HOH A . D 4 HOH 262 562 254 HOH HOH A . D 4 HOH 263 563 246 HOH HOH A . D 4 HOH 264 564 80 HOH HOH A . D 4 HOH 265 565 177 HOH HOH A . D 4 HOH 266 566 283 HOH HOH A . D 4 HOH 267 567 278 HOH HOH A . D 4 HOH 268 568 274 HOH HOH A . D 4 HOH 269 569 214 HOH HOH A . D 4 HOH 270 570 279 HOH HOH A . D 4 HOH 271 571 219 HOH HOH A . D 4 HOH 272 572 153 HOH HOH A . D 4 HOH 273 573 308 HOH HOH A . D 4 HOH 274 574 265 HOH HOH A . D 4 HOH 275 575 96 HOH HOH A . D 4 HOH 276 576 200 HOH HOH A . D 4 HOH 277 577 217 HOH HOH A . D 4 HOH 278 578 141 HOH HOH A . D 4 HOH 279 579 244 HOH HOH A . D 4 HOH 280 580 144 HOH HOH A . D 4 HOH 281 581 143 HOH HOH A . D 4 HOH 282 582 307 HOH HOH A . D 4 HOH 283 583 223 HOH HOH A . D 4 HOH 284 584 180 HOH HOH A . D 4 HOH 285 585 286 HOH HOH A . D 4 HOH 286 586 276 HOH HOH A . D 4 HOH 287 587 158 HOH HOH A . D 4 HOH 288 588 198 HOH HOH A . D 4 HOH 289 589 263 HOH HOH A . D 4 HOH 290 590 213 HOH HOH A . D 4 HOH 291 591 99 HOH HOH A . D 4 HOH 292 592 125 HOH HOH A . D 4 HOH 293 593 275 HOH HOH A . D 4 HOH 294 594 298 HOH HOH A . D 4 HOH 295 595 285 HOH HOH A . D 4 HOH 296 596 268 HOH HOH A . D 4 HOH 297 597 199 HOH HOH A . D 4 HOH 298 598 221 HOH HOH A . D 4 HOH 299 599 218 HOH HOH A . D 4 HOH 300 600 184 HOH HOH A . D 4 HOH 301 601 70 HOH HOH A . D 4 HOH 302 602 135 HOH HOH A . D 4 HOH 303 603 272 HOH HOH A . D 4 HOH 304 604 306 HOH HOH A . D 4 HOH 305 605 318 HOH HOH A . D 4 HOH 306 606 319 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-07-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MxCuBE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 6 # _pdbx_entry_details.entry_id 8PDT _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 407 ? ? O A HOH 557 ? ? 1.93 2 1 O A HOH 529 ? ? O A HOH 551 ? ? 1.95 3 1 O A HOH 302 ? ? O A HOH 484 ? ? 1.99 4 1 O A HOH 566 ? ? O A HOH 570 ? ? 2.00 5 1 NZ A LYS 64 ? A O A HOH 301 ? ? 2.02 6 1 O A HOH 426 ? ? O A HOH 542 ? ? 2.02 7 1 OG A SER 161 ? ? OD1 A ASP 163 ? ? 2.03 8 1 O A HOH 472 ? ? O A HOH 509 ? ? 2.05 9 1 O A HOH 543 ? ? O A HOH 557 ? ? 2.08 10 1 OH A TYR 220 ? ? O A HOH 302 ? ? 2.10 11 1 O A HOH 605 ? ? O A HOH 606 ? ? 2.10 12 1 O A HOH 537 ? ? O A HOH 568 ? ? 2.14 13 1 O A HOH 321 ? ? O A HOH 551 ? ? 2.15 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 311 ? ? 1_555 O A HOH 330 ? ? 1_455 1.91 2 1 O A HOH 573 ? ? 1_555 O A HOH 597 ? ? 1_655 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 39 ? ? -119.15 -154.77 2 1 LYS A 64 ? A -148.68 -27.05 3 1 LYS A 64 ? B -147.49 -25.34 4 1 SER A 125 ? ? -123.96 -166.92 5 1 ALA A 171 ? ? -172.02 149.99 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 122 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ILE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 123 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 148.30 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 603 ? 6.19 . 2 1 O ? A HOH 605 ? 7.98 . 3 1 O ? A HOH 606 ? 8.88 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A SER 74 ? OG ? A SER 60 OG 2 1 Y 0 A GLU 116 ? N A A GLU 102 N 3 1 Y 0 A GLU 116 ? CA A A GLU 102 CA 4 1 Y 0 A GLU 116 ? C A A GLU 102 C 5 1 Y 0 A GLU 116 ? O A A GLU 102 O 6 1 Y 0 A GLU 116 ? CB A A GLU 102 CB 7 1 Y 0 A GLU 116 ? CG A A GLU 102 CG 8 1 Y 0 A GLU 116 ? CD A A GLU 102 CD 9 1 Y 0 A GLU 116 ? OE1 A A GLU 102 OE1 10 1 Y 0 A GLU 116 ? OE2 A A GLU 102 OE2 11 1 Y 0 A SER 138 ? OG ? A SER 124 OG 12 1 Y 0 A GLY 157 ? N B A GLY 143 N 13 1 Y 0 A GLY 157 ? CA B A GLY 143 CA 14 1 Y 0 A GLY 157 ? C B A GLY 143 C 15 1 Y 0 A GLY 157 ? O B A GLY 143 O 16 1 Y 0 A LYS 185 ? N C A LYS 171 N 17 1 Y 0 A LYS 185 ? CA C A LYS 171 CA 18 1 Y 0 A LYS 185 ? C C A LYS 171 C 19 1 Y 0 A LYS 185 ? O C A LYS 171 O 20 1 Y 0 A LYS 185 ? CB C A LYS 171 CB 21 1 Y 0 A LYS 185 ? CG C A LYS 171 CG 22 1 Y 0 A LYS 185 ? CD C A LYS 171 CD 23 1 Y 0 A LYS 185 ? CE C A LYS 171 CE 24 1 Y 0 A LYS 185 ? NZ C A LYS 171 NZ 25 1 N 0 C LGU 1 ? O1 ? C LGU ? O1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU -1 ? A GLU 1 2 1 Y 1 A HIS 247 ? A HIS 233 3 1 Y 1 A HIS 248 ? A HIS 234 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 MAV 1 B MAV 1 A MAV 336 n B 2 BEM 2 B BEM 2 A BEM 335 n C 3 LGU 1 C LGU 1 A LGU 340 n C 3 BEM 2 C BEM 2 A BEM 337 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BEM 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpAb BEM 'COMMON NAME' GMML 1.0 'b-D-mannopyranuronic acid' BEM 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-ManpA BEM 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 ManA LGU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LGulpAa LGU 'COMMON NAME' GMML 1.0 'a-L-gulopyranuronic acid' LGU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-GulpA LGU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GulA MAV 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpAa MAV 'COMMON NAME' GMML 1.0 'a-D-mannopyranuronic acid' MAV 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-ManpA MAV 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 ManA # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpAb1-4DManpAa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a1122A-1a_1-5][a1122A-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-ManpA]{[(4+1)][b-D-ManpA]{}}' LINUCS PDB-CARE ? 4 3 DManpAb1-4LGulpAa1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/2,2,1/[a1121A-1a_1-5][a1122A-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 6 3 '[][a-L-GulpA]{[(4+1)][b-D-ManpA]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 BEM C1 O1 1 MAV O4 HO4 sing ? 2 3 2 BEM C1 O1 1 LGU O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAV 1 n 2 BEM 2 n 3 LGU 1 n 3 BEM 2 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 BEM ? ? BEM ? ? 'SUBJECT OF INVESTIGATION' ? 2 LGU ? ? LGU ? ? 'SUBJECT OF INVESTIGATION' ? 3 MAV ? ? MAV ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8PC3 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #