data_8PU6 # _entry.id 8PU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PU6 pdb_00008pu6 10.2210/pdb8pu6/pdb WWPDB D_1292131146 ? ? EMDB EMD-17929 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17930 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17931 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17932 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17933 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17934 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17935 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17936 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17937 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17940 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17942 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17943 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17938 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17939 'other EM volume' EMDB 'The deposition ID needs to be replaced by the EMDB accession code, once available' EMD-17941 'other EM volume' EMDB 'Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes: pooled class' EMD-17929 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8PU6 _pdbx_database_status.recvd_initial_deposition_date 2023-07-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Obr, M.' 1 0000-0003-1756-6564 'Percipalle, M.' 2 0009-0006-4081-1571 'Chernikova, D.' 3 0009-0007-4866-8498 'Yang, H.' 4 0000-0003-0539-0477 'Thader, A.' 5 0000-0001-6966-0400 'Pinke, G.' 6 0000-0002-6727-7296 'Porley, D.' 7 0009-0001-6180-3611 'Mansky, L.M.' 8 0000-0003-2391-1061 'Dick, R.A.' 9 0000-0003-3693-2531 'Schur, F.K.M.' 10 0000-0003-4790-8078 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Unconventional stabilization of the human T-cell leukemia virus type 1 immature Gag lattice.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2023.07.24.548988 _citation.pdbx_database_id_PubMed 37546793 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Obr, M.' 1 0000-0003-1756-6564 primary 'Percipalle, M.' 2 0009-0006-4081-1571 primary 'Chernikova, D.' 3 0009-0007-4866-8498 primary 'Yang, H.' 4 0000-0003-0539-0477 primary 'Thader, A.' 5 0000-0001-6966-0400 primary 'Pinke, G.' 6 0000-0002-6727-7296 primary 'Porley, D.' 7 0009-0001-6180-3611 primary 'Mansky, L.M.' 8 0000-0003-2391-1061 primary 'Dick, R.A.' 9 0000-0003-3693-2531 primary 'Schur, F.K.' 10 0000-0003-4790-8078 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Gag protein (Fragment)' _entity.formula_weight 13969.809 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLIS EAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALP ; _entity_poly.pdbx_seq_one_letter_code_can ;PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLIS EAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALP ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 VAL n 1 3 MET n 1 4 HIS n 1 5 PRO n 1 6 HIS n 1 7 GLY n 1 8 ALA n 1 9 PRO n 1 10 PRO n 1 11 ASN n 1 12 HIS n 1 13 ARG n 1 14 PRO n 1 15 TRP n 1 16 GLN n 1 17 MET n 1 18 LYS n 1 19 ASP n 1 20 LEU n 1 21 GLN n 1 22 ALA n 1 23 ILE n 1 24 LYS n 1 25 GLN n 1 26 GLU n 1 27 VAL n 1 28 SER n 1 29 GLN n 1 30 ALA n 1 31 ALA n 1 32 PRO n 1 33 GLY n 1 34 SER n 1 35 PRO n 1 36 GLN n 1 37 PHE n 1 38 MET n 1 39 GLN n 1 40 THR n 1 41 ILE n 1 42 ARG n 1 43 LEU n 1 44 ALA n 1 45 VAL n 1 46 GLN n 1 47 GLN n 1 48 PHE n 1 49 ASP n 1 50 PRO n 1 51 THR n 1 52 ALA n 1 53 LYS n 1 54 ASP n 1 55 LEU n 1 56 GLN n 1 57 ASP n 1 58 LEU n 1 59 LEU n 1 60 GLN n 1 61 TYR n 1 62 LEU n 1 63 CYS n 1 64 SER n 1 65 SER n 1 66 LEU n 1 67 VAL n 1 68 ALA n 1 69 SER n 1 70 LEU n 1 71 HIS n 1 72 HIS n 1 73 GLN n 1 74 GLN n 1 75 LEU n 1 76 ASP n 1 77 SER n 1 78 LEU n 1 79 ILE n 1 80 SER n 1 81 GLU n 1 82 ALA n 1 83 GLU n 1 84 THR n 1 85 ARG n 1 86 GLY n 1 87 ILE n 1 88 THR n 1 89 GLY n 1 90 TYR n 1 91 ASN n 1 92 PRO n 1 93 LEU n 1 94 ALA n 1 95 GLY n 1 96 PRO n 1 97 LEU n 1 98 ARG n 1 99 VAL n 1 100 GLN n 1 101 ALA n 1 102 ASN n 1 103 ASN n 1 104 PRO n 1 105 GLN n 1 106 GLN n 1 107 GLN n 1 108 GLY n 1 109 LEU n 1 110 ARG n 1 111 ARG n 1 112 GLU n 1 113 TYR n 1 114 GLN n 1 115 GLN n 1 116 LEU n 1 117 TRP n 1 118 LEU n 1 119 ALA n 1 120 ALA n 1 121 PHE n 1 122 ALA n 1 123 ALA n 1 124 LEU n 1 125 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 125 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human T-cell leukemia virus type I' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11908 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code X5GX59_9DELA _struct_ref.pdbx_db_accession X5GX59 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLIS EAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALP ; _struct_ref.pdbx_align_begin 28 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8PU6 A 1 ? 125 ? X5GX59 28 ? 152 ? 1 125 2 1 8PU6 B 1 ? 125 ? X5GX59 28 ? 152 ? 1 125 3 1 8PU6 C 1 ? 125 ? X5GX59 28 ? 152 ? 1 125 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PU6 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8PU6 _struct.title 'Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes: pooled class' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PU6 _struct_keywords.text 'Retrovirus, HTLV, immature capsid, CA, CA-NTD, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 16 ? VAL A 27 ? GLN A 16 VAL A 27 1 ? 12 HELX_P HELX_P2 AA2 SER A 34 ? ASP A 49 ? SER A 34 ASP A 49 1 ? 16 HELX_P HELX_P3 AA3 THR A 51 ? CYS A 63 ? THR A 51 CYS A 63 1 ? 13 HELX_P HELX_P4 AA4 SER A 64 ? GLY A 86 ? SER A 64 GLY A 86 1 ? 23 HELX_P HELX_P5 AA5 PRO A 96 ? ALA A 101 ? PRO A 96 ALA A 101 1 ? 6 HELX_P HELX_P6 AA6 GLN A 106 ? ALA A 123 ? GLN A 106 ALA A 123 1 ? 18 HELX_P HELX_P7 AA7 GLN B 16 ? VAL B 27 ? GLN B 16 VAL B 27 1 ? 12 HELX_P HELX_P8 AA8 SER B 34 ? ASP B 49 ? SER B 34 ASP B 49 1 ? 16 HELX_P HELX_P9 AA9 THR B 51 ? CYS B 63 ? THR B 51 CYS B 63 1 ? 13 HELX_P HELX_P10 AB1 SER B 64 ? GLY B 86 ? SER B 64 GLY B 86 1 ? 23 HELX_P HELX_P11 AB2 PRO B 96 ? ALA B 101 ? PRO B 96 ALA B 101 1 ? 6 HELX_P HELX_P12 AB3 GLN B 106 ? ALA B 123 ? GLN B 106 ALA B 123 1 ? 18 HELX_P HELX_P13 AB4 GLN C 16 ? VAL C 27 ? GLN C 16 VAL C 27 1 ? 12 HELX_P HELX_P14 AB5 SER C 34 ? ASP C 49 ? SER C 34 ASP C 49 1 ? 16 HELX_P HELX_P15 AB6 THR C 51 ? CYS C 63 ? THR C 51 CYS C 63 1 ? 13 HELX_P HELX_P16 AB7 SER C 64 ? GLY C 86 ? SER C 64 GLY C 86 1 ? 23 HELX_P HELX_P17 AB8 ASN C 91 ? GLY C 95 ? ASN C 91 GLY C 95 5 ? 5 HELX_P HELX_P18 AB9 PRO C 96 ? ASN C 103 ? PRO C 96 ASN C 103 1 ? 8 HELX_P HELX_P19 AC1 GLN C 106 ? ALA C 123 ? GLN C 106 ALA C 123 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 8PU6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 HIS 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 HIS 6 6 ? ? ? A . n A 1 7 GLY 7 7 ? ? ? A . n A 1 8 ALA 8 8 ? ? ? A . n A 1 9 PRO 9 9 ? ? ? A . n A 1 10 PRO 10 10 ? ? ? A . n A 1 11 ASN 11 11 ? ? ? A . n A 1 12 HIS 12 12 ? ? ? A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 TRP 117 117 117 TRP TRP A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 PRO 125 125 125 PRO PRO A . n B 1 1 PRO 1 1 ? ? ? B . n B 1 2 VAL 2 2 ? ? ? B . n B 1 3 MET 3 3 ? ? ? B . n B 1 4 HIS 4 4 ? ? ? B . n B 1 5 PRO 5 5 ? ? ? B . n B 1 6 HIS 6 6 ? ? ? B . n B 1 7 GLY 7 7 ? ? ? B . n B 1 8 ALA 8 8 ? ? ? B . n B 1 9 PRO 9 9 ? ? ? B . n B 1 10 PRO 10 10 ? ? ? B . n B 1 11 ASN 11 11 ? ? ? B . n B 1 12 HIS 12 12 ? ? ? B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 TRP 15 15 15 TRP TRP B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 MET 17 17 17 MET MET B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 GLN 21 21 21 GLN GLN B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 LYS 24 24 24 LYS LYS B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 SER 28 28 28 SER SER B . n B 1 29 GLN 29 29 29 GLN GLN B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ALA 31 31 31 ALA ALA B . n B 1 32 PRO 32 32 32 PRO PRO B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 PRO 35 35 35 PRO PRO B . n B 1 36 GLN 36 36 36 GLN GLN B . n B 1 37 PHE 37 37 37 PHE PHE B . n B 1 38 MET 38 38 38 MET MET B . n B 1 39 GLN 39 39 39 GLN GLN B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 ILE 41 41 41 ILE ILE B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 ALA 44 44 44 ALA ALA B . n B 1 45 VAL 45 45 45 VAL VAL B . n B 1 46 GLN 46 46 46 GLN GLN B . n B 1 47 GLN 47 47 47 GLN GLN B . n B 1 48 PHE 48 48 48 PHE PHE B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 PRO 50 50 50 PRO PRO B . n B 1 51 THR 51 51 51 THR THR B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 ASP 54 54 54 ASP ASP B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 GLN 56 56 56 GLN GLN B . n B 1 57 ASP 57 57 57 ASP ASP B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 GLN 60 60 60 GLN GLN B . n B 1 61 TYR 61 61 61 TYR TYR B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 CYS 63 63 63 CYS CYS B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 SER 69 69 69 SER SER B . n B 1 70 LEU 70 70 70 LEU LEU B . n B 1 71 HIS 71 71 71 HIS HIS B . n B 1 72 HIS 72 72 72 HIS HIS B . n B 1 73 GLN 73 73 73 GLN GLN B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 ASP 76 76 76 ASP ASP B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 LEU 78 78 78 LEU LEU B . n B 1 79 ILE 79 79 79 ILE ILE B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 THR 84 84 84 THR THR B . n B 1 85 ARG 85 85 85 ARG ARG B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 THR 88 88 88 THR THR B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 TYR 90 90 90 TYR TYR B . n B 1 91 ASN 91 91 91 ASN ASN B . n B 1 92 PRO 92 92 92 PRO PRO B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 PRO 96 96 96 PRO PRO B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ARG 98 98 98 ARG ARG B . n B 1 99 VAL 99 99 99 VAL VAL B . n B 1 100 GLN 100 100 100 GLN GLN B . n B 1 101 ALA 101 101 101 ALA ALA B . n B 1 102 ASN 102 102 102 ASN ASN B . n B 1 103 ASN 103 103 103 ASN ASN B . n B 1 104 PRO 104 104 104 PRO PRO B . n B 1 105 GLN 105 105 105 GLN GLN B . n B 1 106 GLN 106 106 106 GLN GLN B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 ARG 110 110 110 ARG ARG B . n B 1 111 ARG 111 111 111 ARG ARG B . n B 1 112 GLU 112 112 112 GLU GLU B . n B 1 113 TYR 113 113 113 TYR TYR B . n B 1 114 GLN 114 114 114 GLN GLN B . n B 1 115 GLN 115 115 115 GLN GLN B . n B 1 116 LEU 116 116 116 LEU LEU B . n B 1 117 TRP 117 117 117 TRP TRP B . n B 1 118 LEU 118 118 118 LEU LEU B . n B 1 119 ALA 119 119 119 ALA ALA B . n B 1 120 ALA 120 120 120 ALA ALA B . n B 1 121 PHE 121 121 121 PHE PHE B . n B 1 122 ALA 122 122 122 ALA ALA B . n B 1 123 ALA 123 123 123 ALA ALA B . n B 1 124 LEU 124 124 124 LEU LEU B . n B 1 125 PRO 125 125 125 PRO PRO B . n C 1 1 PRO 1 1 ? ? ? C . n C 1 2 VAL 2 2 ? ? ? C . n C 1 3 MET 3 3 ? ? ? C . n C 1 4 HIS 4 4 ? ? ? C . n C 1 5 PRO 5 5 ? ? ? C . n C 1 6 HIS 6 6 ? ? ? C . n C 1 7 GLY 7 7 ? ? ? C . n C 1 8 ALA 8 8 ? ? ? C . n C 1 9 PRO 9 9 ? ? ? C . n C 1 10 PRO 10 10 ? ? ? C . n C 1 11 ASN 11 11 ? ? ? C . n C 1 12 HIS 12 12 ? ? ? C . n C 1 13 ARG 13 13 13 ARG ARG C . n C 1 14 PRO 14 14 14 PRO PRO C . n C 1 15 TRP 15 15 15 TRP TRP C . n C 1 16 GLN 16 16 16 GLN GLN C . n C 1 17 MET 17 17 17 MET MET C . n C 1 18 LYS 18 18 18 LYS LYS C . n C 1 19 ASP 19 19 19 ASP ASP C . n C 1 20 LEU 20 20 20 LEU LEU C . n C 1 21 GLN 21 21 21 GLN GLN C . n C 1 22 ALA 22 22 22 ALA ALA C . n C 1 23 ILE 23 23 23 ILE ILE C . n C 1 24 LYS 24 24 24 LYS LYS C . n C 1 25 GLN 25 25 25 GLN GLN C . n C 1 26 GLU 26 26 26 GLU GLU C . n C 1 27 VAL 27 27 27 VAL VAL C . n C 1 28 SER 28 28 28 SER SER C . n C 1 29 GLN 29 29 29 GLN GLN C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 ALA 31 31 31 ALA ALA C . n C 1 32 PRO 32 32 32 PRO PRO C . n C 1 33 GLY 33 33 33 GLY GLY C . n C 1 34 SER 34 34 34 SER SER C . n C 1 35 PRO 35 35 35 PRO PRO C . n C 1 36 GLN 36 36 36 GLN GLN C . n C 1 37 PHE 37 37 37 PHE PHE C . n C 1 38 MET 38 38 38 MET MET C . n C 1 39 GLN 39 39 39 GLN GLN C . n C 1 40 THR 40 40 40 THR THR C . n C 1 41 ILE 41 41 41 ILE ILE C . n C 1 42 ARG 42 42 42 ARG ARG C . n C 1 43 LEU 43 43 43 LEU LEU C . n C 1 44 ALA 44 44 44 ALA ALA C . n C 1 45 VAL 45 45 45 VAL VAL C . n C 1 46 GLN 46 46 46 GLN GLN C . n C 1 47 GLN 47 47 47 GLN GLN C . n C 1 48 PHE 48 48 48 PHE PHE C . n C 1 49 ASP 49 49 49 ASP ASP C . n C 1 50 PRO 50 50 50 PRO PRO C . n C 1 51 THR 51 51 51 THR THR C . n C 1 52 ALA 52 52 52 ALA ALA C . n C 1 53 LYS 53 53 53 LYS LYS C . n C 1 54 ASP 54 54 54 ASP ASP C . n C 1 55 LEU 55 55 55 LEU LEU C . n C 1 56 GLN 56 56 56 GLN GLN C . n C 1 57 ASP 57 57 57 ASP ASP C . n C 1 58 LEU 58 58 58 LEU LEU C . n C 1 59 LEU 59 59 59 LEU LEU C . n C 1 60 GLN 60 60 60 GLN GLN C . n C 1 61 TYR 61 61 61 TYR TYR C . n C 1 62 LEU 62 62 62 LEU LEU C . n C 1 63 CYS 63 63 63 CYS CYS C . n C 1 64 SER 64 64 64 SER SER C . n C 1 65 SER 65 65 65 SER SER C . n C 1 66 LEU 66 66 66 LEU LEU C . n C 1 67 VAL 67 67 67 VAL VAL C . n C 1 68 ALA 68 68 68 ALA ALA C . n C 1 69 SER 69 69 69 SER SER C . n C 1 70 LEU 70 70 70 LEU LEU C . n C 1 71 HIS 71 71 71 HIS HIS C . n C 1 72 HIS 72 72 72 HIS HIS C . n C 1 73 GLN 73 73 73 GLN GLN C . n C 1 74 GLN 74 74 74 GLN GLN C . n C 1 75 LEU 75 75 75 LEU LEU C . n C 1 76 ASP 76 76 76 ASP ASP C . n C 1 77 SER 77 77 77 SER SER C . n C 1 78 LEU 78 78 78 LEU LEU C . n C 1 79 ILE 79 79 79 ILE ILE C . n C 1 80 SER 80 80 80 SER SER C . n C 1 81 GLU 81 81 81 GLU GLU C . n C 1 82 ALA 82 82 82 ALA ALA C . n C 1 83 GLU 83 83 83 GLU GLU C . n C 1 84 THR 84 84 84 THR THR C . n C 1 85 ARG 85 85 85 ARG ARG C . n C 1 86 GLY 86 86 86 GLY GLY C . n C 1 87 ILE 87 87 87 ILE ILE C . n C 1 88 THR 88 88 88 THR THR C . n C 1 89 GLY 89 89 89 GLY GLY C . n C 1 90 TYR 90 90 90 TYR TYR C . n C 1 91 ASN 91 91 91 ASN ASN C . n C 1 92 PRO 92 92 92 PRO PRO C . n C 1 93 LEU 93 93 93 LEU LEU C . n C 1 94 ALA 94 94 94 ALA ALA C . n C 1 95 GLY 95 95 95 GLY GLY C . n C 1 96 PRO 96 96 96 PRO PRO C . n C 1 97 LEU 97 97 97 LEU LEU C . n C 1 98 ARG 98 98 98 ARG ARG C . n C 1 99 VAL 99 99 99 VAL VAL C . n C 1 100 GLN 100 100 100 GLN GLN C . n C 1 101 ALA 101 101 101 ALA ALA C . n C 1 102 ASN 102 102 102 ASN ASN C . n C 1 103 ASN 103 103 103 ASN ASN C . n C 1 104 PRO 104 104 104 PRO PRO C . n C 1 105 GLN 105 105 105 GLN GLN C . n C 1 106 GLN 106 106 106 GLN GLN C . n C 1 107 GLN 107 107 107 GLN GLN C . n C 1 108 GLY 108 108 108 GLY GLY C . n C 1 109 LEU 109 109 109 LEU LEU C . n C 1 110 ARG 110 110 110 ARG ARG C . n C 1 111 ARG 111 111 111 ARG ARG C . n C 1 112 GLU 112 112 112 GLU GLU C . n C 1 113 TYR 113 113 113 TYR TYR C . n C 1 114 GLN 114 114 114 GLN GLN C . n C 1 115 GLN 115 115 115 GLN GLN C . n C 1 116 LEU 116 116 116 LEU LEU C . n C 1 117 TRP 117 117 117 TRP TRP C . n C 1 118 LEU 118 118 118 LEU LEU C . n C 1 119 ALA 119 119 119 ALA ALA C . n C 1 120 ALA 120 120 120 ALA ALA C . n C 1 121 PHE 121 121 121 PHE PHE C . n C 1 122 ALA 122 122 122 ALA ALA C . n C 1 123 ALA 123 123 123 ALA ALA C . n C 1 124 LEU 124 124 124 LEU LEU C . n C 1 125 PRO 125 125 125 PRO PRO C . n # _pdbx_contact_author.id 4 _pdbx_contact_author.email florian.schur@ist.ac.at _pdbx_contact_author.name_first Florian _pdbx_contact_author.name_last Schur _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4790-8078 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8PU6 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # loop_ _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.details _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 1QRJ ? ? ? ? ? PDB 'experimental model' 1QRJ 2 1 1G03 ? ? ? ? ? PDB 'experimental model' 1G03 # _em_3d_reconstruction.entry_id 8PU6 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 134000 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Human T-cell leukemia virus type I' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # loop_ _em_image_scans.entry_id _em_image_scans.id _em_image_scans.number_digital_images _em_image_scans.details _em_image_scans.scanner_model _em_image_scans.sampling_size _em_image_scans.od_range _em_image_scans.quant_bit_size _em_image_scans.citation_id _em_image_scans.dimension_height _em_image_scans.dimension_width _em_image_scans.frames_per_image _em_image_scans.image_recording_id _em_image_scans.used_frames_per_image 8PU6 1 ? ? ? ? ? ? ? 4092 5760 ? 1 ? 8PU6 2 ? ? ? ? ? ? ? 3838 3708 ? 2 ? # loop_ _em_imaging.entry_id _em_imaging.id _em_imaging.astigmatism _em_imaging.electron_beam_tilt_params _em_imaging.residual_tilt _em_imaging.microscope_model _em_imaging.specimen_holder_type _em_imaging.specimen_holder_model _em_imaging.details _em_imaging.date _em_imaging.accelerating_voltage _em_imaging.illumination_mode _em_imaging.mode _em_imaging.nominal_cs _em_imaging.nominal_defocus_min _em_imaging.nominal_defocus_max _em_imaging.calibrated_defocus_min _em_imaging.calibrated_defocus_max _em_imaging.tilt_angle_min _em_imaging.tilt_angle_max _em_imaging.nominal_magnification _em_imaging.calibrated_magnification _em_imaging.electron_source _em_imaging.citation_id _em_imaging.temperature _em_imaging.detector_distance _em_imaging.recording_temperature_minimum _em_imaging.recording_temperature_maximum _em_imaging.alignment_procedure _em_imaging.c2_aperture_diameter _em_imaging.specimen_id _em_imaging.cryogen 8PU6 1 ? ? ? 'FEI TITAN KRIOS' ? 'FEI TITAN KRIOS AUTOGRID HOLDER' ? ? 300 'FLOOD BEAM' 'BRIGHT FIELD' 2.7 1000 4000 ? ? ? ? 80000 ? 'FIELD EMISSION GUN' ? ? ? ? ? 'COMA FREE' ? 1 NITROGEN 8PU6 2 ? ? ? 'FEI TITAN KRIOS' ? 'FEI TITAN KRIOS AUTOGRID HOLDER' ? ? 300 'FLOOD BEAM' 'BRIGHT FIELD' 2.7 1500 3500 ? ? ? ? 105000 ? 'FIELD EMISSION GUN' ? ? ? ? ? 'COMA FREE' ? 1 NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type C-flat-2/2 _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' _em_virus_entity.virus_isolate STRAIN _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty YES _em_virus_entity.details ? # _em_vitrification.entry_id 8PU6 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 283 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Grids coated with 2nm continuous carbon layer' # _em_experiment.entry_id 8PU6 _em_experiment.id 1 _em_experiment.reconstruction_method 'SUBTOMOGRAM AVERAGING' _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8PU6 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H A GLN 16 ? ? OD2 A ASP 19 ? ? 1.59 2 1 NE2 C GLN 74 ? ? O C ALA 123 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 104 ? ? -66.54 1.53 2 1 GLN B 105 ? ? -95.20 30.34 3 1 PRO C 92 ? ? -67.24 1.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 1 ? A PRO 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A HIS 4 ? A HIS 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A HIS 6 ? A HIS 6 7 1 Y 1 A GLY 7 ? A GLY 7 8 1 Y 1 A ALA 8 ? A ALA 8 9 1 Y 1 A PRO 9 ? A PRO 9 10 1 Y 1 A PRO 10 ? A PRO 10 11 1 Y 1 A ASN 11 ? A ASN 11 12 1 Y 1 A HIS 12 ? A HIS 12 13 1 Y 1 B PRO 1 ? B PRO 1 14 1 Y 1 B VAL 2 ? B VAL 2 15 1 Y 1 B MET 3 ? B MET 3 16 1 Y 1 B HIS 4 ? B HIS 4 17 1 Y 1 B PRO 5 ? B PRO 5 18 1 Y 1 B HIS 6 ? B HIS 6 19 1 Y 1 B GLY 7 ? B GLY 7 20 1 Y 1 B ALA 8 ? B ALA 8 21 1 Y 1 B PRO 9 ? B PRO 9 22 1 Y 1 B PRO 10 ? B PRO 10 23 1 Y 1 B ASN 11 ? B ASN 11 24 1 Y 1 B HIS 12 ? B HIS 12 25 1 Y 1 C PRO 1 ? C PRO 1 26 1 Y 1 C VAL 2 ? C VAL 2 27 1 Y 1 C MET 3 ? C MET 3 28 1 Y 1 C HIS 4 ? C HIS 4 29 1 Y 1 C PRO 5 ? C PRO 5 30 1 Y 1 C HIS 6 ? C HIS 6 31 1 Y 1 C GLY 7 ? C GLY 7 32 1 Y 1 C ALA 8 ? C ALA 8 33 1 Y 1 C PRO 9 ? C PRO 9 34 1 Y 1 C PRO 10 ? C PRO 10 35 1 Y 1 C ASN 11 ? C ASN 11 36 1 Y 1 C HIS 12 ? C HIS 12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM TRIS 1 'tris(hydroxymethyl)aminomethane' 1 50 mM NaCl 2 'sodium chloride' 1 0.5 mM TCEP 3 'tris(2-carboxyethyl)phosphine' 1 1 mM EDTA 4 'ethylenediamintetraacetic acid' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 11908 _em_entity_assembly_naturalsource.organism 'Human T-cell leukemia virus type I' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain 'BL21 (DE3)' # _em_image_processing.details 'Datasets (1) and (2) combined during Multiparticle refinement. See Materials and methods for details.' _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # loop_ _em_image_recording.average_exposure_time _em_image_recording.avg_electron_dose_per_subtomogram _em_image_recording.avg_electron_dose_per_image _em_image_recording.details _em_image_recording.detector_mode _em_image_recording.film_or_detector_model _em_image_recording.id _em_image_recording.imaging_id _em_image_recording.num_diffraction_images _em_image_recording.num_grids_imaged _em_image_recording.num_real_images 0.3675 143.5 3.5 ? ? 'GATAN K3 BIOQUANTUM (6k x 4k)' 1 1 ? ? ? 1.05 143.5 3.5 ? COUNTING 'GATAN K2 QUANTUM (4k x 4k)' 2 2 ? ? ? # loop_ _em_imaging_optics.chr_aberration_corrector _em_imaging_optics.energyfilter_lower _em_imaging_optics.energyfilter_slit_width _em_imaging_optics.energyfilter_name _em_imaging_optics.energyfilter_upper _em_imaging_optics.id _em_imaging_optics.imaging_id _em_imaging_optics.phase_plate _em_imaging_optics.sph_aberration_corrector _em_imaging_optics.details ? ? 20 'GIF Bioquantum' ? 1 1 ? ? ? ? ? 20 'GIF Quantum LS' ? 2 2 ? ? ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'VOLUME SELECTION' ? 1 1 ? ? subTOM ? 'VOLUME SELECTION' ? 2 1 ? ? Warp 1.0.9 'VOLUME SELECTION' ? 3 1 ? ? MATLAB R2018b 'IMAGE ACQUISITION' ? 4 ? ? 1 SerialEM ? MASKING ? 5 ? ? ? ? ? 'CTF CORRECTION' ? 6 1 ? ? Warp 1.0.9 'LAYERLINE INDEXING' ? 7 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 8 ? ? ? ? ? 'MODEL FITTING' ? 9 ? 1 ? 'UCSF Chimera' ? 'MODEL FITTING' ? 10 ? 1 ? 'UCSF ChimeraX' ? 'MODEL FITTING' ? 11 ? 1 ? Coot ? OTHER ? 12 ? ? ? ? ? 'IMAGE ACQUISITION' ? 13 ? ? 2 SerialEM ? 'CTF CORRECTION' ? 14 1 ? ? CTFFIND 4.1.10 'CTF CORRECTION' ? 15 1 ? ? NOVACTF ? 'MODEL FITTING' ? 16 ? 1 ? ISOLDE ? 'MODEL REFINEMENT' ? 17 ? 1 ? PHENIX ? 'MODEL REFINEMENT' ? 18 ? 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 19 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 20 1 ? ? RELION 3.1.3 'FINAL EULER ASSIGNMENT' ? 21 1 ? ? ? ? CLASSIFICATION ? 22 1 ? ? ? ? RECONSTRUCTION ? 23 1 ? ? RELION 3.1.3 RECONSTRUCTION ? 24 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_volume_selection.details ? _em_volume_selection.id 1 _em_volume_selection.image_processing_id 1 _em_volume_selection.method ? _em_volume_selection.num_tomograms 69 _em_volume_selection.num_volumes_extracted 245000 _em_volume_selection.reference_model ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Austrian Science Fund' Austria P31445 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 'R01 GM151775' 2 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 'R21 DE032878' 3 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' R01AI147890 4 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 1QRJ 2 'experimental model' PDB 1G03 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' #