data_8SJP # _entry.id 8SJP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8SJP pdb_00008sjp 10.2210/pdb8sjp/pdb WWPDB D_1000273889 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-04-24 2 'Structure model' 1 1 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8SJP _pdbx_database_status.recvd_initial_deposition_date 2023-04-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Tensegrity triangle' _pdbx_database_related.db_id 8D93 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email rs17@nyu.edu _pdbx_contact_author.name_first Ruojie _pdbx_contact_author.name_last Sha _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0807-734X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vecchioni, S.' 1 0000-0001-8243-650X 'Janowski, J.' 2 0000-0002-6990-5719 'Sha, R.' 3 0000-0002-0807-734X 'Ohayon, Y.P.' 4 0000-0001-7500-4282 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 121 _citation.language ? _citation.page_first e2321992121 _citation.page_last e2321992121 _citation.title 'Engineering tertiary chirality in helical biopolymers.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2321992121 _citation.pdbx_database_id_PubMed 38684000 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Janowski, J.' 1 ? primary 'Pham, V.A.B.' 2 0000-0001-5074-7303 primary 'Vecchioni, S.' 3 0000-0001-8243-650X primary 'Woloszyn, K.' 4 ? primary 'Lu, B.' 5 0000-0001-6424-2197 primary 'Zou, Y.' 6 ? primary 'Erkalo, B.' 7 ? primary 'Perren, L.' 8 0000-0001-9169-1780 primary 'Rueb, J.' 9 ? primary 'Madnick, J.' 10 0000-0003-1026-8409 primary 'Mao, C.' 11 0000-0001-7516-8666 primary 'Saito, M.' 12 0000-0003-0795-8548 primary 'Ohayon, Y.P.' 13 0000-0001-7500-4282 primary 'Jonoska, N.' 14 ? primary 'Sha, R.' 15 0000-0002-0807-734X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*GP*CP*TP*GP*AP*CP*CP*TP*GP*AP*CP*TP*CP*AP*CP*A)-3') ; 5445.545 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*CP*GP*AP*TP*GP*GP*AP*CP*AP*GP*GP*GP*G)-3') ; 4081.659 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*TP*GP*TP*GP*AP*GP*TP*CP*AP*CP*CP*AP*TP*CP*G)-3') ; 4584.984 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(*TP*GP*CP*TP*CP*CP*TP*GP*TP*GP*GP*TP*CP*AP*GP*C)-3') ; 4881.151 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DC)(DT)(DG)(DA)(DC)(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DA)(DC)(DA)' CAGCTGACCTGACTCACA A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DT)(DG)(DG)(DA)(DC)(DA)(DG)(DG)(DG)(DG)' CGATGGACAGGGG B ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DG)(DA)(DG)(DT)(DC)(DA)(DC)(DC)(DA)(DT)(DC)(DG)' TGTGAGTCACCATCG C ? 4 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DT)(DC)(DC)(DT)(DG)(DT)(DG)(DG)(DT)(DC)(DA)(DG)(DC)' TGCTCCTGTGGTCAGC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DG n 1 4 DC n 1 5 DT n 1 6 DG n 1 7 DA n 1 8 DC n 1 9 DC n 1 10 DT n 1 11 DG n 1 12 DA n 1 13 DC n 1 14 DT n 1 15 DC n 1 16 DA n 1 17 DC n 1 18 DA n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DA n 2 10 DG n 2 11 DG n 2 12 DG n 2 13 DG n 3 1 DT n 3 2 DG n 3 3 DT n 3 4 DG n 3 5 DA n 3 6 DG n 3 7 DT n 3 8 DC n 3 9 DA n 3 10 DC n 3 11 DC n 3 12 DA n 3 13 DT n 3 14 DC n 3 15 DG n 4 1 DT n 4 2 DG n 4 3 DC n 4 4 DT n 4 5 DC n 4 6 DC n 4 7 DT n 4 8 DG n 4 9 DT n 4 10 DG n 4 11 DG n 4 12 DT n 4 13 DC n 4 14 DA n 4 15 DG n 4 16 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 18 'synthetic construct' ? 32630 ? 2 1 sample 1 13 'synthetic construct' ? 32630 ? 3 1 sample 1 15 'synthetic construct' ? 32630 ? 4 1 sample 1 16 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DC 15 15 15 DC DC A . n A 1 16 DA 16 16 16 DA DA A . n A 1 17 DC 17 17 17 DC DC A . n A 1 18 DA 18 18 18 DA DA A . n B 2 1 DC 1 7 7 DC DC B . n B 2 2 DG 2 8 8 DG DG B . n B 2 3 DA 3 9 9 DA DA B . n B 2 4 DT 4 10 10 DT DT B . n B 2 5 DG 5 11 11 DG DG B . n B 2 6 DG 6 12 12 DG DG B . n B 2 7 DA 7 13 13 DA DA B . n B 2 8 DC 8 14 14 DC DC B . n B 2 9 DA 9 15 15 DA DA B . n B 2 10 DG 10 16 16 DG DG B . n B 2 11 DG 11 17 17 DG DG B . n B 2 12 DG 12 18 18 DG DG B . n B 2 13 DG 13 19 19 DG DG B . n C 3 1 DT 1 1 1 DT DT C . n C 3 2 DG 2 2 2 DG DG C . n C 3 3 DT 3 3 3 DT DT C . n C 3 4 DG 4 4 4 DG DG C . n C 3 5 DA 5 5 5 DA DA C . n C 3 6 DG 6 6 6 DG DG C . n C 3 7 DT 7 7 7 DT DT C . n C 3 8 DC 8 8 8 DC DC C . n C 3 9 DA 9 9 9 DA DA C . n C 3 10 DC 10 10 10 DC DC C . n C 3 11 DC 11 11 11 DC DC C . n C 3 12 DA 12 12 12 DA DA C . n C 3 13 DT 13 13 13 DT DT C . n C 3 14 DC 14 14 14 DC DC C . n C 3 15 DG 15 15 15 DG DG C . n D 4 1 DT 1 1 1 DT DT D . n D 4 2 DG 2 2 2 DG DG D . n D 4 3 DC 3 3 3 DC DC D . n D 4 4 DT 4 4 4 DT DT D . n D 4 5 DC 5 5 5 DC DC D . n D 4 6 DC 6 6 6 DC DC D . n D 4 7 DT 7 7 7 DT DT D . n D 4 8 DG 8 8 8 DG DG D . n D 4 9 DT 9 9 9 DT DT D . n D 4 10 DG 10 10 10 DG DG D . n D 4 11 DG 11 11 11 DG DG D . n D 4 12 DT 12 12 12 DT DT D . n D 4 13 DC 13 13 13 DC DC D . n D 4 14 DA 14 14 14 DA DA D . n D 4 15 DG 15 15 15 DG DG D . n D 4 16 DC 16 16 16 DC DC D . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8SJP _cell.details ? _cell.formula_units_Z ? _cell.length_a 100.632 _cell.length_a_esd ? _cell.length_b 100.632 _cell.length_b_esd ? _cell.length_c 72.676 _cell.length_c_esd ? _cell.volume 637373.285 _cell.volume_esd ? _cell.Z_PDB 3 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8SJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall 'P 32' _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8SJP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 11.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 89.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details '338K-293K at 0.4K/hr' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM MOPS, 1.25 M magnesium sulfate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-06-12 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00743 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00743 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 318.48 _reflns.entry_id 8SJP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 5.218 _reflns.d_resolution_low 55.815 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1881 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 84.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 5.218 5.986 ? 1.0 ? ? ? ? 213 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 1 0.221 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 12.999 55.815 ? 36.9 ? ? ? ? 208 ? ? ? ? ? ? ? ? ? ? ? 9.0 ? ? ? ? ? ? 2 1 0.999 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 314.83 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8SJP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 5.22 _refine.ls_d_res_low 50.32 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1853 _refine.ls_number_reflns_R_free 100 _refine.ls_number_reflns_R_work 1753 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 59.35 _refine.ls_percent_reflns_R_free 5.40 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.0959 _refine.ls_R_factor_R_free 0.1607 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.0930 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 6XNA' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.3166 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 5.22 _refine_hist.d_res_low 50.32 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1266 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1266 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0255 ? 1416 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.9835 ? 2175 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.1220 ? 246 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0111 ? 62 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 37.7907 ? 603 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 5.22 _refine_ls_shell.d_res_low 50.32 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_R_work 1753 _refine_ls_shell.percent_reflns_obs 59.35 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.0930 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.1607 # _struct.entry_id 8SJP _struct.title '[3T15] Self-assembling DNA motif with 15 base pairs between junctions and P32 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8SJP _struct_keywords.text 'Tensegrity triangle, DNA nanotechnology, nanomaterials, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8SJP 8SJP ? 1 ? 1 2 PDB 8SJP 8SJP ? 2 ? 1 3 PDB 8SJP 8SJP ? 3 ? 1 4 PDB 8SJP 8SJP ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8SJP A 1 ? 18 ? 8SJP 1 ? 18 ? 1 18 2 2 8SJP B 1 ? 13 ? 8SJP 7 ? 19 ? 7 19 3 3 8SJP C 1 ? 15 ? 8SJP 1 ? 15 ? 1 15 4 4 8SJP D 1 ? 16 ? 8SJP 1 ? 16 ? 1 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z+2/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 48.4506666667 3 'crystal symmetry operation' 3_555 -x+y,-x,z+1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 24.2253333333 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 D DC 16 N3 ? ? A DG 3 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 D DC 16 O2 ? ? A DG 3 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 O6 ? ? ? 1_555 D DC 16 N4 ? ? A DG 3 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 4 N3 ? ? ? 1_555 D DG 15 N1 ? ? A DC 4 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 4 N4 ? ? ? 1_555 D DG 15 O6 ? ? A DC 4 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 O2 ? ? ? 1_555 D DG 15 N2 ? ? A DC 4 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 D DA 14 N1 ? ? A DT 5 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 O4 ? ? ? 1_555 D DA 14 N6 ? ? A DT 5 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 D DC 13 N3 ? ? A DG 6 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 D DC 13 O2 ? ? A DG 6 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 O6 ? ? ? 1_555 D DC 13 N4 ? ? A DG 6 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 7 N1 ? ? ? 1_555 D DT 12 N3 ? ? A DA 7 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N6 ? ? ? 1_555 D DT 12 O4 ? ? A DA 7 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 D DG 11 N1 ? ? A DC 8 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 D DG 11 O6 ? ? A DC 8 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 D DG 11 N2 ? ? A DC 8 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 N3 ? ? ? 1_555 D DG 10 N1 ? ? A DC 9 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N4 ? ? ? 1_555 D DG 10 O6 ? ? A DC 9 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 O2 ? ? ? 1_555 D DG 10 N2 ? ? A DC 9 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 N3 ? ? ? 1_555 C DA 9 N1 ? ? A DT 10 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 O4 ? ? ? 1_555 C DA 9 N6 ? ? A DT 10 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 C DC 8 N3 ? ? A DG 11 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 C DC 8 O2 ? ? A DG 11 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 O6 ? ? ? 1_555 C DC 8 N4 ? ? A DG 11 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 C DT 7 N3 ? ? A DA 12 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 C DT 7 O4 ? ? A DA 12 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 13 N3 ? ? ? 1_555 C DG 6 N1 ? ? A DC 13 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 13 N4 ? ? ? 1_555 C DG 6 O6 ? ? A DC 13 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 O2 ? ? ? 1_555 C DG 6 N2 ? ? A DC 13 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 N3 ? ? ? 1_555 C DA 5 N1 ? ? A DT 14 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 14 O4 ? ? ? 1_555 C DA 5 N6 ? ? A DT 14 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 N3 ? ? ? 1_555 C DG 4 N1 ? ? A DC 15 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 15 N4 ? ? ? 1_555 C DG 4 O6 ? ? A DC 15 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 15 O2 ? ? ? 1_555 C DG 4 N2 ? ? A DC 15 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 16 N1 ? ? ? 1_555 C DT 3 N3 ? ? A DA 16 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 16 N6 ? ? ? 1_555 C DT 3 O4 ? ? A DA 16 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 N3 ? ? ? 1_555 C DG 2 N1 ? ? A DC 17 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 17 N4 ? ? ? 1_555 C DG 2 O6 ? ? A DC 17 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 17 O2 ? ? ? 1_555 C DG 2 N2 ? ? A DC 17 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 18 N1 ? ? ? 1_555 C DT 1 N3 ? ? A DA 18 C DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DA 18 N6 ? ? ? 1_555 C DT 1 O4 ? ? A DA 18 C DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 15 N1 ? ? B DC 7 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 15 O6 ? ? B DC 7 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 15 N2 ? ? B DC 7 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 14 N3 ? ? B DG 8 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 14 O2 ? ? B DG 8 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 14 N4 ? ? B DG 8 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 9 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 9 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 12 N1 ? ? B DT 10 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 10 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 11 N3 ? ? B DG 11 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 11 O2 ? ? B DG 11 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 11 N4 ? ? B DG 11 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 12 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 12 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 12 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DA 7 N1 ? ? ? 1_555 D DT 9 N3 ? ? B DA 13 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DA 7 N6 ? ? ? 1_555 D DT 9 O4 ? ? B DA 13 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DC 8 N3 ? ? ? 1_555 D DG 8 N1 ? ? B DC 14 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DC 8 N4 ? ? ? 1_555 D DG 8 O6 ? ? B DC 14 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DC 8 O2 ? ? ? 1_555 D DG 8 N2 ? ? B DC 14 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DA 9 N1 ? ? ? 1_555 D DT 7 N3 ? ? B DA 15 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B DA 9 N6 ? ? ? 1_555 D DT 7 O4 ? ? B DA 15 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B DG 10 N1 ? ? ? 1_555 D DC 6 N3 ? ? B DG 16 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B DG 10 N2 ? ? ? 1_555 D DC 6 O2 ? ? B DG 16 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B DG 10 O6 ? ? ? 1_555 D DC 6 N4 ? ? B DG 16 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B DG 11 N1 ? ? ? 1_555 D DC 5 O2 ? ? B DG 17 D DC 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog69 hydrog ? ? B DG 11 N2 ? ? ? 1_555 D DC 5 N3 ? ? B DG 17 D DC 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog70 hydrog ? ? B DG 12 N1 ? ? ? 1_555 D DT 4 O4 ? ? B DG 18 D DT 4 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog71 hydrog ? ? B DG 12 N2 ? ? ? 1_555 D DC 5 O2 ? ? B DG 18 D DC 5 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog72 hydrog ? ? B DG 13 N1 ? ? ? 1_555 D DC 3 N3 ? ? B DG 19 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B DG 13 N2 ? ? ? 1_555 D DC 3 O2 ? ? B DG 19 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B DG 13 O6 ? ? ? 1_555 D DC 3 N4 ? ? B DG 19 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N2 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 17 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O2 _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 DC _pdbx_validate_close_contact.auth_seq_id_2 5 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.95 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O3'" A DA 18 ? ? 1_555 OP2 B DC 7 ? ? 3_555 1.31 2 1 "O3'" A DA 18 ? ? 1_555 P B DC 7 ? ? 3_555 1.63 3 1 P C DT 1 ? ? 1_555 "O3'" C DG 15 ? ? 3_555 1.64 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.535 1.435 0.100 0.013 N 2 1 N3 A DA 2 ? ? C4 A DA 2 ? ? 1.306 1.344 -0.038 0.006 N 3 1 N9 A DA 2 ? ? C4 A DA 2 ? ? 1.331 1.374 -0.043 0.006 N 4 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.665 1.593 0.072 0.010 N 5 1 P A DC 4 ? ? "O5'" A DC 4 ? ? 1.670 1.593 0.077 0.010 N 6 1 "C1'" A DC 4 ? ? N1 A DC 4 ? ? 1.585 1.488 0.097 0.013 N 7 1 "O3'" A DC 13 ? ? "C3'" A DC 13 ? ? 1.525 1.435 0.090 0.013 N 8 1 "C1'" A DC 13 ? ? N1 A DC 13 ? ? 1.571 1.488 0.083 0.013 N 9 1 "O3'" A DC 15 ? ? "C3'" A DC 15 ? ? 1.358 1.419 -0.061 0.006 N 10 1 "C1'" A DA 16 ? ? N9 A DA 16 ? ? 1.382 1.468 -0.086 0.014 N 11 1 N9 A DA 16 ? ? C4 A DA 16 ? ? 1.322 1.374 -0.052 0.006 N 12 1 "C1'" A DC 17 ? ? N1 A DC 17 ? ? 1.363 1.468 -0.105 0.014 N 13 1 "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 1.559 1.512 0.047 0.007 N 14 1 "C5'" B DA 9 ? ? "C4'" B DA 9 ? ? 1.563 1.512 0.051 0.007 N 15 1 "O3'" B DA 9 ? ? "C3'" B DA 9 ? ? 1.520 1.435 0.085 0.013 N 16 1 "O3'" B DA 13 ? ? "C3'" B DA 13 ? ? 1.338 1.419 -0.081 0.006 N 17 1 "C5'" B DC 14 ? ? "C4'" B DC 14 ? ? 1.564 1.512 0.052 0.007 N 18 1 "O3'" B DC 14 ? ? "C3'" B DC 14 ? ? 1.533 1.435 0.098 0.013 N 19 1 N9 B DA 15 ? ? C4 B DA 15 ? ? 1.322 1.374 -0.052 0.006 N 20 1 "O3'" C DT 1 ? ? "C3'" C DT 1 ? ? 1.566 1.435 0.131 0.013 N 21 1 "O3'" C DG 2 ? ? "C3'" C DG 2 ? ? 1.538 1.435 0.103 0.013 N 22 1 "O3'" C DG 4 ? ? "C3'" C DG 4 ? ? 1.532 1.435 0.097 0.013 N 23 1 "C5'" C DG 6 ? ? "C4'" C DG 6 ? ? 1.556 1.512 0.044 0.007 N 24 1 N9 C DG 6 ? ? C4 C DG 6 ? ? 1.307 1.375 -0.068 0.008 N 25 1 N1 C DT 7 ? ? C2 C DT 7 ? ? 1.425 1.376 0.049 0.008 N 26 1 "O3'" C DC 10 ? ? "C3'" C DC 10 ? ? 1.543 1.435 0.108 0.013 N 27 1 "C1'" C DC 10 ? ? N1 C DC 10 ? ? 1.623 1.488 0.135 0.013 N 28 1 "C5'" C DC 11 ? ? "C4'" C DC 11 ? ? 1.560 1.512 0.048 0.007 N 29 1 "O3'" C DC 11 ? ? "C3'" C DC 11 ? ? 1.517 1.435 0.082 0.013 N 30 1 N9 C DA 12 ? ? C4 C DA 12 ? ? 1.336 1.374 -0.038 0.006 N 31 1 "O3'" C DC 14 ? ? "C3'" C DC 14 ? ? 1.369 1.419 -0.050 0.006 N 32 1 "C5'" C DG 15 ? ? "C4'" C DG 15 ? ? 1.556 1.512 0.044 0.007 N 33 1 "O3'" D DT 4 ? ? "C3'" D DT 4 ? ? 1.553 1.435 0.118 0.013 N 34 1 "O3'" D DC 5 ? ? "C3'" D DC 5 ? ? 1.545 1.435 0.110 0.013 N 35 1 "C5'" D DC 6 ? ? "C4'" D DC 6 ? ? 1.573 1.512 0.061 0.007 N 36 1 P D DT 7 ? ? "O5'" D DT 7 ? ? 1.654 1.593 0.061 0.010 N 37 1 "C5'" D DG 11 ? ? "C4'" D DG 11 ? ? 1.559 1.512 0.047 0.007 N 38 1 "O3'" D DG 11 ? ? "C3'" D DG 11 ? ? 1.528 1.435 0.093 0.013 N 39 1 "C1'" D DG 11 ? ? N9 D DG 11 ? ? 1.382 1.468 -0.086 0.014 N 40 1 N9 D DG 11 ? ? C4 D DG 11 ? ? 1.325 1.375 -0.050 0.008 N 41 1 "O3'" D DG 15 ? ? "C3'" D DG 15 ? ? 1.513 1.435 0.078 0.013 N 42 1 "C1'" D DC 16 ? ? N1 D DC 16 ? ? 1.598 1.488 0.110 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.43 108.30 2.13 0.30 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 114.32 108.30 6.02 0.30 N 3 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.73 108.30 4.43 0.30 N 4 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.50 108.30 2.20 0.30 N 5 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 96.65 105.70 -9.05 0.90 N 6 1 "C3'" A DA 12 ? ? "O3'" A DA 12 ? ? P A DC 13 ? ? 155.01 119.70 35.31 1.20 Y 7 1 "O3'" A DA 12 ? ? P A DC 13 ? ? "O5'" A DC 13 ? ? 60.78 104.00 -43.22 1.90 Y 8 1 "O3'" A DA 12 ? ? P A DC 13 ? ? OP2 A DC 13 ? ? 123.62 110.50 13.12 1.10 Y 9 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.40 108.30 2.10 0.30 N 10 1 "O5'" A DC 15 ? ? P A DC 15 ? ? OP2 A DC 15 ? ? 118.54 110.70 7.84 1.20 N 11 1 "O5'" B DC 7 ? ? P B DC 7 ? ? OP1 B DC 7 ? ? 96.65 105.70 -9.05 0.90 N 12 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.12 108.30 2.82 0.30 N 13 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 113.60 108.30 5.30 0.30 N 14 1 "C3'" B DG 19 ? ? "C2'" B DG 19 ? ? "C1'" B DG 19 ? ? 96.29 102.40 -6.11 0.80 N 15 1 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 113.27 108.30 4.97 0.30 N 16 1 "O4'" C DT 7 ? ? "C1'" C DT 7 ? ? N1 C DT 7 ? ? 111.63 108.30 3.33 0.30 N 17 1 "O5'" C DA 9 ? ? P C DA 9 ? ? OP1 C DA 9 ? ? 118.51 110.70 7.81 1.20 N 18 1 "O4'" C DA 12 ? ? "C1'" C DA 12 ? ? N9 C DA 12 ? ? 112.14 108.30 3.84 0.30 N 19 1 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 112.83 108.30 4.53 0.30 N 20 1 "C3'" C DC 14 ? ? "C2'" C DC 14 ? ? "C1'" C DC 14 ? ? 96.96 102.40 -5.44 0.80 N 21 1 "O4'" C DC 14 ? ? "C1'" C DC 14 ? ? N1 C DC 14 ? ? 112.27 108.30 3.97 0.30 N 22 1 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 112.23 108.30 3.93 0.30 N 23 1 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 112.87 108.30 4.57 0.30 N 24 1 "C4'" D DC 5 ? ? "C3'" D DC 5 ? ? "C2'" D DC 5 ? ? 97.27 102.20 -4.93 0.70 N 25 1 OP1 D DG 8 ? ? P D DG 8 ? ? OP2 D DG 8 ? ? 108.87 119.60 -10.73 1.50 N 26 1 "C3'" D DA 14 ? ? "C2'" D DA 14 ? ? "C1'" D DA 14 ? ? 96.92 102.40 -5.48 0.80 N 27 1 "O4'" D DA 14 ? ? "C1'" D DA 14 ? ? N9 D DA 14 ? ? 111.99 108.30 3.69 0.30 N 28 1 "O4'" D DG 15 ? ? "C1'" D DG 15 ? ? N9 D DG 15 ? ? 112.47 108.30 4.17 0.30 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 33.462 -19.859 -9.549 1.57550844837 3.70993665963 4.2429153556 0.493271505538 -0.291867161084 0.0673543282682 4.73679224433 7.52562476151 3.24187415944 0.189499035006 1.65980151093 -4.22574728353 1.33620637805 1.1303821154 -3.47363402 -2.62348652493 -3.29895042292 0.336007176333 -0.994364789328 1.31482838534 3.2835813676 'X-RAY DIFFRACTION' 2 ? refined 35.327 -13.301 1.682 1.88124002209 2.89566194564 3.79004860805 0.00706079701904 -0.110614750341 0.878614316111 7.2027813746 3.82773148568 3.92028586697 3.57458334014 -4.57538701011 -0.844708974607 1.18949237185 -2.94019912431 0.727173718982 -1.07675872876 1.52644939293 -3.99140573573 1.39858485694 -0.365418721043 3.62285349807 'X-RAY DIFFRACTION' 3 ? refined 6.860 -12.861 0.371 3.67801453935 3.43724670919 1.66587597739 0.209960636874 1.24096650582 0.253061156877 5.47364387433 0.414829094396 1.79766745421 1.52202212337 -3.13022053778 -0.871362296523 0.413068482362 2.06201708337 2.84447693259 -1.09779455691 0.716331198832 -1.48354575492 -1.16666145651 -0.544633690384 1.2895712938 'X-RAY DIFFRACTION' 4 ? refined 23.682 -14.575 -17.774 3.05269577932 3.53583048566 2.44428669422 0.155596554099 -0.239366225594 0.390692990164 4.17853666181 2.00550436188 1.97198203341 -0.150836543981 0.34025674514 0.915473802696 -0.529988552838 2.75645326868 -2.48256488276 -0.171189080271 -0.897287067184 1.81023082576 1.04388902662 -1.03261463539 -0.00574365587227 'X-RAY DIFFRACTION' 5 ? refined 14.452 -8.418 -6.503 1.70927758976 2.54922969118 4.87103682722 0.682374971954 -0.327359524227 0.514831929427 1.38255730237 6.80883157161 5.57692256133 1.26707490126 -0.524765956124 4.93178897116 1.98861912227 -0.320338579453 2.2339468899 -1.02677645095 -2.52512401444 -3.11841509377 -2.01314707904 -0.441098453789 -1.1365496253 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 D 1 D 16 '( CHAIN D AND RESID 1:16 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 1 A 12 '( CHAIN A AND RESID 1:12 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 13 A 18 '( CHAIN A AND RESID 13:18 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 7 B 19 '( CHAIN B AND RESID 7:19 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 C 1 C 15 '( CHAIN C AND RESID 1:15 )' ? ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8SJP 'double helix' 8SJP 'a-form double helix' 8SJP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 D DC 16 1_555 -0.006 -0.075 -1.199 -7.824 -5.111 -1.936 1 A_DG3:DC16_D A 3 ? D 16 ? 19 1 1 A DC 4 1_555 D DG 15 1_555 -0.034 -0.389 -0.769 -6.353 -1.695 -2.301 2 A_DC4:DG15_D A 4 ? D 15 ? 19 1 1 A DT 5 1_555 D DA 14 1_555 -0.741 -0.257 -0.363 -6.775 9.220 -10.254 3 A_DT5:DA14_D A 5 ? D 14 ? 20 1 1 A DG 6 1_555 D DC 13 1_555 -0.376 -0.177 0.062 0.356 -4.122 -0.007 4 A_DG6:DC13_D A 6 ? D 13 ? 19 1 1 A DA 7 1_555 D DT 12 1_555 0.264 -0.619 0.394 9.629 -14.161 0.798 5 A_DA7:DT12_D A 7 ? D 12 ? 20 1 1 A DC 8 1_555 D DG 11 1_555 0.406 -0.003 0.457 3.720 -16.713 -5.345 6 A_DC8:DG11_D A 8 ? D 11 ? 19 1 1 A DC 9 1_555 D DG 10 1_555 -1.973 -0.043 0.406 0.271 -17.879 -1.690 7 A_DC9:DG10_D A 9 ? D 10 ? 19 1 1 A DT 10 1_555 C DA 9 1_555 -0.573 0.132 -0.295 -5.265 -17.487 -8.728 8 A_DT10:DA9_C A 10 ? C 9 ? 20 1 1 A DG 11 1_555 C DC 8 1_555 -0.372 -0.126 -0.039 -0.348 -6.476 3.846 9 A_DG11:DC8_C A 11 ? C 8 ? 19 1 1 A DA 12 1_555 C DT 7 1_555 0.144 -0.536 -0.660 0.306 -3.250 3.529 10 A_DA12:DT7_C A 12 ? C 7 ? 20 1 1 A DC 13 1_555 C DG 6 1_555 0.223 -0.239 0.226 -8.329 -21.414 7.718 11 A_DC13:DG6_C A 13 ? C 6 ? 19 1 1 A DT 14 1_555 C DA 5 1_555 -0.213 -0.467 0.265 -8.904 -9.000 -4.773 12 A_DT14:DA5_C A 14 ? C 5 ? 20 1 1 A DC 15 1_555 C DG 4 1_555 -0.001 -0.402 0.053 -10.552 -5.665 -4.410 13 A_DC15:DG4_C A 15 ? C 4 ? 19 1 1 A DA 16 1_555 C DT 3 1_555 -0.107 -0.300 -0.496 -1.657 1.441 -11.598 14 A_DA16:DT3_C A 16 ? C 3 ? 20 1 1 A DC 17 1_555 C DG 2 1_555 0.272 -0.163 0.387 -5.728 -6.290 2.503 15 A_DC17:DG2_C A 17 ? C 2 ? 19 1 1 A DA 18 1_555 C DT 1 1_555 0.116 -0.490 -0.202 -6.848 -4.157 3.346 16 A_DA18:DT1_C A 18 ? C 1 ? 20 1 1 B DC 1 1_555 C DG 15 1_555 0.249 -0.032 -0.149 5.840 3.712 1.810 17 B_DC7:DG15_C B 7 ? C 15 ? 19 1 1 B DG 2 1_555 C DC 14 1_555 -0.385 -0.009 -0.010 -0.022 -13.505 -5.797 18 B_DG8:DC14_C B 8 ? C 14 ? 19 1 1 B DA 3 1_555 C DT 13 1_555 0.166 -0.211 0.697 8.211 -8.605 0.039 19 B_DA9:DT13_C B 9 ? C 13 ? 20 1 1 B DT 4 1_555 C DA 12 1_555 -0.160 -0.221 -0.552 -4.161 -6.890 5.218 20 B_DT10:DA12_C B 10 ? C 12 ? 20 1 1 B DG 5 1_555 C DC 11 1_555 -0.211 -0.189 0.383 9.185 6.701 8.599 21 B_DG11:DC11_C B 11 ? C 11 ? 19 1 1 B DG 6 1_555 C DC 10 1_555 -0.027 -0.068 -0.131 4.239 -4.718 -3.118 22 B_DG12:DC10_C B 12 ? C 10 ? 19 1 1 B DA 7 1_555 D DT 9 1_555 0.130 0.120 -0.566 -8.757 -12.309 -10.996 23 B_DA13:DT9_D B 13 ? D 9 ? 20 1 1 B DC 8 1_555 D DG 8 1_555 -0.169 -0.197 -0.016 -3.849 -10.337 0.804 24 B_DC14:DG8_D B 14 ? D 8 ? 19 1 1 B DA 9 1_555 D DT 7 1_555 0.353 -0.165 0.930 8.096 1.113 1.909 25 B_DA15:DT7_D B 15 ? D 7 ? 20 1 1 B DG 10 1_555 D DC 6 1_555 -0.078 0.151 -0.046 3.521 -13.963 14.163 26 B_DG16:DC6_D B 16 ? D 6 ? 19 1 1 B DG 11 1_555 D DC 5 1_555 -0.108 0.083 -0.734 -2.782 6.926 21.895 27 B_DG17:DC5_D B 17 ? D 5 ? 22 1 1 B DG 12 1_555 D DT 4 1_555 0.846 -0.281 -1.345 4.888 -21.050 -10.119 28 B_DG18:DT4_D B 18 ? D 4 ? ? ? 1 B DG 13 1_555 D DC 3 1_555 0.029 -0.195 -0.606 -10.853 -10.071 3.873 29 B_DG19:DC3_D B 19 ? D 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 D DC 16 1_555 A DC 4 1_555 D DG 15 1_555 -0.526 -1.484 3.046 1.567 -2.780 34.633 -2.082 1.106 3.126 -4.658 -2.625 34.775 1 AA_DG3DC4:DG15DC16_DD A 3 ? D 16 ? A 4 ? D 15 ? 1 A DC 4 1_555 D DG 15 1_555 A DT 5 1_555 D DA 14 1_555 -0.043 -0.326 3.461 2.089 7.326 30.327 -2.061 0.495 3.284 13.733 -3.916 31.247 2 AA_DC4DT5:DA14DG15_DD A 4 ? D 15 ? A 5 ? D 14 ? 1 A DT 5 1_555 D DA 14 1_555 A DG 6 1_555 D DC 13 1_555 1.681 0.838 2.934 -1.952 1.468 34.897 1.198 -3.058 2.870 2.444 3.250 34.980 3 AA_DT5DG6:DC13DA14_DD A 5 ? D 14 ? A 6 ? D 13 ? 1 A DG 6 1_555 D DC 13 1_555 A DA 7 1_555 D DT 12 1_555 0.906 -0.528 3.084 -8.048 4.780 36.392 -1.386 -2.360 2.741 7.502 12.631 37.537 4 AA_DG6DA7:DT12DC13_DD A 6 ? D 13 ? A 7 ? D 12 ? 1 A DA 7 1_555 D DT 12 1_555 A DC 8 1_555 D DG 11 1_555 0.275 -1.693 3.225 -1.420 -5.479 27.718 -2.151 -0.903 3.471 -11.289 2.926 28.279 5 AA_DA7DC8:DG11DT12_DD A 7 ? D 12 ? A 8 ? D 11 ? 1 A DC 8 1_555 D DG 11 1_555 A DC 9 1_555 D DG 10 1_555 0.037 -1.403 2.635 3.398 -3.466 24.058 -2.406 0.792 2.785 -8.208 -8.048 24.535 6 AA_DC8DC9:DG10DG11_DD A 8 ? D 11 ? A 9 ? D 10 ? 1 A DC 9 1_555 D DG 10 1_555 A DT 10 1_555 C DA 9 1_555 -1.193 -1.667 3.050 -0.193 -1.157 31.915 -2.832 2.135 3.114 -2.103 0.350 31.936 7 AA_DC9DT10:DA9DG10_CD A 9 ? D 10 ? A 10 ? C 9 ? 1 A DT 10 1_555 C DA 9 1_555 A DG 11 1_555 C DC 8 1_555 0.558 1.035 3.156 -5.325 9.312 33.354 0.323 -1.728 3.198 15.726 8.993 34.990 8 AA_DT10DG11:DC8DA9_CC A 10 ? C 9 ? A 11 ? C 8 ? 1 A DG 11 1_555 C DC 8 1_555 A DA 12 1_555 C DT 7 1_555 -0.286 0.246 3.474 -8.253 4.769 36.557 -0.283 -0.708 3.460 7.448 12.890 37.738 9 AA_DG11DA12:DT7DC8_CC A 11 ? C 8 ? A 12 ? C 7 ? 1 A DA 12 1_555 C DT 7 1_555 A DC 13 1_555 C DG 6 1_555 0.753 -1.145 3.781 1.354 -14.397 35.561 0.477 -0.939 3.962 -22.462 -2.113 38.300 10 AA_DA12DC13:DG6DT7_CC A 12 ? C 7 ? A 13 ? C 6 ? 1 A DC 13 1_555 C DG 6 1_555 A DT 14 1_555 C DA 5 1_555 -0.784 0.088 3.306 0.566 7.386 40.733 -0.676 1.171 3.262 10.506 -0.805 41.373 11 AA_DC13DT14:DA5DG6_CC A 13 ? C 6 ? A 14 ? C 5 ? 1 A DT 14 1_555 C DA 5 1_555 A DC 15 1_555 C DG 4 1_555 0.293 -0.198 3.107 2.005 -4.169 36.956 0.218 -0.205 3.121 -6.545 -3.148 37.234 12 AA_DT14DC15:DG4DA5_CC A 14 ? C 5 ? A 15 ? C 4 ? 1 A DC 15 1_555 C DG 4 1_555 A DA 16 1_555 C DT 3 1_555 -0.969 1.505 3.155 -1.906 -3.219 35.578 2.893 1.316 3.058 -5.250 3.109 35.768 13 AA_DC15DA16:DT3DG4_CC A 15 ? C 4 ? A 16 ? C 3 ? 1 A DA 16 1_555 C DT 3 1_555 A DC 17 1_555 C DG 2 1_555 0.452 -1.479 3.845 0.315 5.082 34.297 -3.376 -0.704 3.600 8.559 -0.530 34.662 14 AA_DA16DC17:DG2DT3_CC A 16 ? C 3 ? A 17 ? C 2 ? 1 A DC 17 1_555 C DG 2 1_555 A DA 18 1_555 C DT 1 1_555 -0.508 1.973 3.404 0.391 -5.484 40.533 3.427 0.771 3.117 -7.871 -0.561 40.889 15 AA_DC17DA18:DT1DG2_CC A 17 ? C 2 ? A 18 ? C 1 ? 1 B DC 1 1_555 C DG 15 1_555 B DG 2 1_555 C DC 14 1_555 -1.343 0.432 3.242 -0.870 -3.480 38.765 1.065 1.911 3.221 -5.230 1.307 38.925 16 BB_DC7DG8:DC14DG15_CC B 7 ? C 15 ? B 8 ? C 14 ? 1 B DG 2 1_555 C DC 14 1_555 B DA 3 1_555 C DT 13 1_555 0.128 -1.122 2.568 -6.854 -4.813 33.747 -1.287 -1.059 2.623 -8.136 11.587 34.741 17 BB_DG8DA9:DT13DC14_CC B 8 ? C 14 ? B 9 ? C 13 ? 1 B DA 3 1_555 C DT 13 1_555 B DT 4 1_555 C DA 12 1_555 0.061 -2.099 3.863 16.523 0.003 33.395 -3.295 2.533 3.510 0.005 -26.811 37.154 18 BB_DA9DT10:DA12DT13_CC B 9 ? C 13 ? B 10 ? C 12 ? 1 B DT 4 1_555 C DA 12 1_555 B DG 5 1_555 C DC 11 1_555 1.336 0.357 3.642 -3.424 -14.435 29.801 3.219 -2.952 2.991 -26.128 6.198 33.215 19 BB_DT10DG11:DC11DA12_CC B 10 ? C 12 ? B 11 ? C 11 ? 1 B DG 5 1_555 C DC 11 1_555 B DG 6 1_555 C DC 10 1_555 0.045 -1.697 3.118 1.241 5.737 32.858 -3.823 0.110 2.790 10.041 -2.172 33.364 20 BB_DG11DG12:DC10DC11_CC B 11 ? C 11 ? B 12 ? C 10 ? 1 B DG 6 1_555 C DC 10 1_555 B DA 7 1_555 D DT 9 1_555 -0.729 -0.239 3.261 -0.337 6.165 34.818 -1.297 1.152 3.181 10.204 0.557 35.345 21 BB_DG12DA13:DT9DC10_DC B 12 ? C 10 ? B 13 ? D 9 ? 1 B DA 7 1_555 D DT 9 1_555 B DC 8 1_555 D DG 8 1_555 0.979 -1.177 2.723 1.002 3.443 32.938 -2.539 -1.579 2.618 6.049 -1.761 33.127 22 BB_DA13DC14:DG8DT9_DD B 13 ? D 9 ? B 14 ? D 8 ? 1 B DC 8 1_555 D DG 8 1_555 B DA 9 1_555 D DT 7 1_555 1.129 1.912 3.444 -4.412 -8.449 38.542 3.780 -2.166 2.839 -12.567 6.562 39.660 23 BB_DC14DA15:DT7DG8_DD B 14 ? D 8 ? B 15 ? D 7 ? 1 B DA 9 1_555 D DT 7 1_555 B DG 10 1_555 D DC 6 1_555 0.555 0.441 3.499 4.641 13.697 35.753 -1.217 -0.203 3.476 21.269 -7.207 38.478 24 BB_DA15DG16:DC6DT7_DD B 15 ? D 7 ? B 16 ? D 6 ? 1 B DG 10 1_555 D DC 6 1_555 B DG 11 1_555 D DC 5 1_555 0.356 0.475 3.382 -1.141 -10.309 45.915 1.460 -0.542 3.201 -13.019 1.440 47.010 25 BB_DG16DG17:DC5DC6_DD B 16 ? D 6 ? B 17 ? D 5 ? 1 B DG 11 1_555 D DC 5 1_555 B DG 12 1_555 D DT 4 1_555 -2.215 0.234 3.276 5.012 4.197 32.290 -0.272 4.725 2.915 7.451 -8.897 32.928 26 BB_DG17DG18:DT4DC5_DD B 17 ? D 5 ? B 18 ? D 4 ? 1 B DG 12 1_555 D DT 4 1_555 B DG 13 1_555 D DC 3 1_555 1.274 -0.943 3.564 -7.380 10.130 34.573 -2.903 -3.047 2.863 16.393 11.942 36.709 27 BB_DG18DG19:DC3DT4_DD B 18 ? D 4 ? B 19 ? D 3 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Office of Naval Research (ONR)' 'United States' N000141912596 1 'Department of Energy (DOE, United States)' 'United States' DE-SC0007991 2 'National Science Foundation (NSF, United States)' 'United States' 2106790 3 'Human Frontier Science Program (HFSP)' France RPG0010/2017 4 'National Science Foundation (NSF, United States)' 'United States' DMR-1420073 5 'National Aeronautic Space Administration (NASA, United States)' 'United States' '2020 NASA Center Innovation Fund' 6 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6XNA _pdbx_initial_refinement_model.details 'DNA assembly' # _space_group.name_H-M_alt 'P 32' _space_group.name_Hall 'P 32' _space_group.IT_number 145 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8SJP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009937 _atom_sites.fract_transf_matrix[1][2] 0.005737 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011474 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013760 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_