data_8SJT # _entry.id 8SJT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8SJT pdb_00008sjt 10.2210/pdb8sjt/pdb WWPDB D_1000273708 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-04-24 2 'Structure model' 1 1 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8SJT _pdbx_database_status.recvd_initial_deposition_date 2023-04-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email rs17@nyu.edu _pdbx_contact_author.name_first Ruojie _pdbx_contact_author.name_last Sha _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0807-734X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Janowski, J.' 1 0000-0002-6990-5719 'Vecchioni, S.' 2 0000-0001-8243-650X 'Sha, R.' 3 0000-0002-0807-734X 'Ohayon, Y.P.' 4 0000-0001-7500-4282 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 121 _citation.language ? _citation.page_first e2321992121 _citation.page_last e2321992121 _citation.title 'Engineering tertiary chirality in helical biopolymers.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2321992121 _citation.pdbx_database_id_PubMed 38684000 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Janowski, J.' 1 ? primary 'Pham, V.A.B.' 2 0000-0001-5074-7303 primary 'Vecchioni, S.' 3 0000-0001-8243-650X primary 'Woloszyn, K.' 4 ? primary 'Lu, B.' 5 0000-0001-6424-2197 primary 'Zou, Y.' 6 ? primary 'Erkalo, B.' 7 ? primary 'Perren, L.' 8 0000-0001-9169-1780 primary 'Rueb, J.' 9 ? primary 'Madnick, J.' 10 0000-0003-1026-8409 primary 'Mao, C.' 11 0000-0001-7516-8666 primary 'Saito, M.' 12 0000-0003-0795-8548 primary 'Ohayon, Y.P.' 13 0000-0001-7500-4282 primary 'Jonoska, N.' 14 ? primary 'Sha, R.' 15 0000-0002-0807-734X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*CP*AP*CP*GP*TP*GP*GP*AP*CP*AP*GP*GP*AP*G)-3') ; 4354.843 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*CP*CP*TP*CP*CP*TP*GP*AP*GP*GP*TP*CP*GP*AP*GP*C)-3') ; 5188.361 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*CP*GP*CP*TP*CP*AP*GP*CP*CP*TP*GP*AP*CP*TP*CP*A)-3') ; 5123.324 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(P*GP*TP*GP*AP*GP*TP*CP*TP*CP*CP*AP*CP*GP*T)-3') ; 4271.778 1 ? ? ? ? 5 polymer syn ;DNA (5'-D(*GP*AP*CP*TP*CP*TP*GP*CP*TP*A)-3') ; 3019.992 1 ? ? ? ? 6 polymer syn ;DNA (5'-D(*GP*TP*TP*AP*GP*CP*AP*GP*AP*G)-3') ; 3109.053 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DG)(DT)(DG)(DG)(DA)(DC)(DA)(DG)(DG)(DA)(DG)' CACGTGGACAGGAG A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DT)(DC)(DC)(DT)(DG)(DA)(DG)(DG)(DT)(DC)(DG)(DA)(DG)(DC)' ACCTCCTGAGGTCGAGC B ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DT)(DC)(DA)(DG)(DC)(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DA)' TCGCTCAGCCTGACTCA C ? 4 polydeoxyribonucleotide no no '(DG)(DT)(DG)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DC)(DG)(DT)' GTGAGTCTCCACGT D ? 5 polydeoxyribonucleotide no no '(DG)(DA)(DC)(DT)(DC)(DT)(DG)(DC)(DT)(DA)' GACTCTGCTA X ? 6 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DA)(DG)(DC)(DA)(DG)(DA)(DG)' GTTAGCAGAG Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DG n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DA n 1 9 DC n 1 10 DA n 1 11 DG n 1 12 DG n 1 13 DA n 1 14 DG n 2 1 DA n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DC n 2 6 DC n 2 7 DT n 2 8 DG n 2 9 DA n 2 10 DG n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DG n 2 15 DA n 2 16 DG n 2 17 DC n 3 1 DT n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DT n 3 6 DC n 3 7 DA n 3 8 DG n 3 9 DC n 3 10 DC n 3 11 DT n 3 12 DG n 3 13 DA n 3 14 DC n 3 15 DT n 3 16 DC n 3 17 DA n 4 1 DG n 4 2 DT n 4 3 DG n 4 4 DA n 4 5 DG n 4 6 DT n 4 7 DC n 4 8 DT n 4 9 DC n 4 10 DC n 4 11 DA n 4 12 DC n 4 13 DG n 4 14 DT n 5 1 DG n 5 2 DA n 5 3 DC n 5 4 DT n 5 5 DC n 5 6 DT n 5 7 DG n 5 8 DC n 5 9 DT n 5 10 DA n 6 1 DG n 6 2 DT n 6 3 DT n 6 4 DA n 6 5 DG n 6 6 DC n 6 7 DA n 6 8 DG n 6 9 DA n 6 10 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 14 'synthetic construct' ? 32630 ? 2 1 sample 1 17 'synthetic construct' ? 32630 ? 3 1 sample 1 17 'synthetic construct' ? 32630 ? 4 1 sample 1 14 'synthetic construct' ? 32630 ? 5 1 sample 1 10 'synthetic construct' ? 32630 ? 6 1 sample 1 10 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DG 14 14 14 DG DG A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DC 13 13 13 DC DC B . n B 2 14 DG 14 14 14 DG DG B . n B 2 15 DA 15 15 15 DA DA B . n B 2 16 DG 16 16 16 DG DG B . n B 2 17 DC 17 17 17 DC DC B . n C 3 1 DT 1 1 1 DT DT C . n C 3 2 DC 2 2 2 DC DC C . n C 3 3 DG 3 3 3 DG DG C . n C 3 4 DC 4 4 4 DC DC C . n C 3 5 DT 5 5 5 DT DT C . n C 3 6 DC 6 6 6 DC DC C . n C 3 7 DA 7 7 7 DA DA C . n C 3 8 DG 8 8 8 DG DG C . n C 3 9 DC 9 9 9 DC DC C . n C 3 10 DC 10 10 10 DC DC C . n C 3 11 DT 11 11 11 DT DT C . n C 3 12 DG 12 12 12 DG DG C . n C 3 13 DA 13 13 13 DA DA C . n C 3 14 DC 14 14 14 DC DC C . n C 3 15 DT 15 15 15 DT DT C . n C 3 16 DC 16 16 16 DC DC C . n C 3 17 DA 17 17 17 DA DA C . n D 4 1 DG 1 1 1 DG DG D . n D 4 2 DT 2 2 2 DT DT D . n D 4 3 DG 3 3 3 DG DG D . n D 4 4 DA 4 4 4 DA DA D . n D 4 5 DG 5 5 5 DG DG D . n D 4 6 DT 6 6 6 DT DT D . n D 4 7 DC 7 7 7 DC DC D . n D 4 8 DT 8 8 8 DT DT D . n D 4 9 DC 9 9 9 DC DC D . n D 4 10 DC 10 10 10 DC DC D . n D 4 11 DA 11 11 11 DA DA D . n D 4 12 DC 12 12 12 DC DC D . n D 4 13 DG 13 13 13 DG DG D . n D 4 14 DT 14 14 14 DT DT D . n E 5 1 DG 1 1 1 DG DG X . n E 5 2 DA 2 2 2 DA DA X . n E 5 3 DC 3 3 3 DC DC X . n E 5 4 DT 4 4 4 DT DT X . n E 5 5 DC 5 5 5 DC DC X . n E 5 6 DT 6 6 6 DT DT X . n E 5 7 DG 7 7 7 DG DG X . n E 5 8 DC 8 8 8 DC DC X . n E 5 9 DT 9 9 9 DT DT X . n E 5 10 DA 10 10 10 DA DA X . n F 6 1 DG 1 1 1 DG DG Y . n F 6 2 DT 2 2 2 DT DT Y . n F 6 3 DT 3 3 3 DT DT Y . n F 6 4 DA 4 4 4 DA DA Y . n F 6 5 DG 5 5 5 DG DG Y . n F 6 6 DC 6 6 6 DC DC Y . n F 6 7 DA 7 7 7 DA DA Y . n F 6 8 DG 8 8 8 DG DG Y . n F 6 9 DA 9 9 9 DA DA Y . n F 6 10 DG 10 10 10 DG DG Y . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8SJT _cell.details ? _cell.formula_units_Z ? _cell.length_a 212.243 _cell.length_a_esd ? _cell.length_b 212.243 _cell.length_b_esd ? _cell.length_c 164.272 _cell.length_c_esd ? _cell.volume 6408566.979 _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8SJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'H 3' _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8SJT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 28.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 95.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details '338K-293K at 0.4K/hr' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM MOPS, 1.25 M magnesium sulfate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-03-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00718 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00718 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 1016.23 _reflns.entry_id 8SJT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 9.380 _reflns.d_resolution_low 80.205 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1416 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 85.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 9.380 10.571 ? ? ? ? ? ? 201 ? ? ? ? ? ? ? ? ? ? ? 10.2 ? ? ? ? ? ? 1 1 0.038 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 19.137 80.205 ? 19.7 ? ? ? ? 203 ? ? ? ? ? ? ? ? ? ? ? 8.8 ? ? ? ? ? ? 2 1 0.999 ? ? 100.0 ? ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 1099.06 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8SJT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 9.38 _refine.ls_d_res_low 48.66 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1386 _refine.ls_number_reflns_R_free 75 _refine.ls_number_reflns_R_work 1311 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 76.66 _refine.ls_percent_reflns_R_free 5.41 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1795 _refine.ls_R_factor_R_free 0.2029 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1783 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.96 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 5W6W' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 45.9380 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 9.38 _refine_hist.d_res_low 48.66 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1669 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1669 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0081 ? 1868 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.7064 ? 2871 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0723 ? 324 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0083 ? 82 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 38.1531 ? 798 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 9.38 _refine_ls_shell.d_res_low 48.66 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_R_work 1311 _refine_ls_shell.percent_reflns_obs 76.66 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1783 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.2029 # _struct.entry_id 8SJT _struct.title '[3T14+10] Self-assembling left-handed tensegrity triangle with 14 interjunction base pairs and a 10 bp linker with R3 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8SJT _struct_keywords.text 'Tensegrity triangle, DNA nanotechnology, nanomaterials, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8SJT 8SJT ? 1 ? 1 2 PDB 8SJT 8SJT ? 2 ? 1 3 PDB 8SJT 8SJT ? 3 ? 1 4 PDB 8SJT 8SJT ? 4 ? 1 5 PDB 8SJT 8SJT ? 5 ? 1 6 PDB 8SJT 8SJT ? 6 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8SJT A 1 ? 14 ? 8SJT 1 ? 14 ? 1 14 2 2 8SJT B 1 ? 17 ? 8SJT 1 ? 17 ? 1 17 3 3 8SJT C 1 ? 17 ? 8SJT 1 ? 17 ? 1 17 4 4 8SJT D 1 ? 14 ? 8SJT 1 ? 14 ? 1 14 5 5 8SJT X 1 ? 10 ? 8SJT 1 ? 10 ? 1 10 6 6 8SJT Y 1 ? 10 ? 8SJT 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 1 2 A,B,C,D,E,F 1 3 A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 D DT 14 N3 ? ? A DA 2 D DT 14 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog2 hydrog ? ? A DC 3 N3 ? ? ? 1_555 D DG 13 N1 ? ? A DC 3 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N4 ? ? ? 1_555 D DG 13 O6 ? ? A DC 3 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 O2 ? ? ? 1_555 D DG 13 N2 ? ? A DC 3 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DC 12 N3 ? ? A DG 4 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 D DC 12 O2 ? ? A DG 4 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 O6 ? ? ? 1_555 D DC 12 N4 ? ? A DG 4 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 N3 ? ? ? 1_555 D DA 11 N1 ? ? A DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 O4 ? ? ? 1_555 D DA 11 N6 ? ? A DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 D DC 10 N3 ? ? A DG 6 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 D DC 10 O2 ? ? A DG 6 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 D DC 10 N4 ? ? A DG 6 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 D DC 9 N3 ? ? A DG 7 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 D DC 9 O2 ? ? A DG 7 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 D DC 9 N4 ? ? A DG 7 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 D DT 8 N3 ? ? A DA 8 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 D DT 8 O4 ? ? A DA 8 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 10 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 10 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 11 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 11 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 11 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 12 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 12 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 12 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 13 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 13 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 14 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 14 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 14 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 1 N1 ? ? ? 1_555 F DT 2 N3 ? ? B DA 1 Y DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 1 N6 ? ? ? 1_555 F DT 2 O4 ? ? B DA 1 Y DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DC 2 N3 ? ? ? 1_555 F DG 1 N1 ? ? B DC 2 Y DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DC 2 N4 ? ? ? 1_555 F DG 1 O6 ? ? B DC 2 Y DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DC 2 O2 ? ? ? 1_555 F DG 1 N2 ? ? B DC 2 Y DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 3 N4 ? ? ? 1_555 F DG 1 N3 ? ? B DC 3 Y DG 1 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog40 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 9 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 9 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 10 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 10 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 10 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 11 C DC 9 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog46 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 11 C DC 10 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog47 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DG 8 O6 ? ? B DT 12 C DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? B DT 12 O2 ? ? ? 1_555 C DG 8 N1 ? ? B DT 12 C DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DA 7 N6 ? ? B DC 13 C DA 7 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog50 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 14 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 14 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 14 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 15 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DA 15 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 15 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DG 16 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 16 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DG 16 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 16 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DG 16 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 16 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DG 16 N1 ? ? ? 1_555 C DT 5 O2 ? ? B DG 16 C DT 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog59 hydrog ? ? B DG 16 O6 ? ? ? 1_555 C DT 5 N3 ? ? B DG 16 C DT 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog60 hydrog ? ? B DC 17 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 17 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DC 17 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 17 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DC 17 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 17 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 12 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 12 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 12 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C DA 13 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 13 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C DA 13 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 13 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C DC 14 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 14 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C DC 14 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 14 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C DC 14 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 14 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C DT 15 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 15 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C DT 15 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 15 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C DC 16 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 16 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C DC 16 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 16 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C DC 16 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 16 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C DA 17 N1 ? ? ? 1_555 D DG 1 N1 ? ? C DA 17 D DG 1 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog77 hydrog ? ? C DA 17 N6 ? ? ? 1_555 D DG 1 O6 ? ? C DA 17 D DG 1 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog78 hydrog ? ? C DA 17 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 17 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C DA 17 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 17 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 10 N1 ? ? X DC 3 Y DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 10 O6 ? ? X DC 3 Y DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 10 N2 ? ? X DC 3 Y DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 9 N1 ? ? X DT 4 Y DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 9 N6 ? ? X DT 4 Y DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E DC 5 N3 ? ? ? 1_555 F DG 8 N1 ? ? X DC 5 Y DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? E DC 5 N4 ? ? ? 1_555 F DG 8 O6 ? ? X DC 5 Y DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? E DC 5 O2 ? ? ? 1_555 F DG 8 N2 ? ? X DC 5 Y DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E DT 6 N3 ? ? ? 1_555 F DA 7 N1 ? ? X DT 6 Y DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E DT 6 O4 ? ? ? 1_555 F DA 7 N6 ? ? X DT 6 Y DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E DG 7 N1 ? ? ? 1_555 F DC 6 N3 ? ? X DG 7 Y DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? E DG 7 N2 ? ? ? 1_555 F DC 6 O2 ? ? X DG 7 Y DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? E DG 7 O6 ? ? ? 1_555 F DC 6 N4 ? ? X DG 7 Y DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? E DC 8 N3 ? ? ? 1_555 F DG 5 N1 ? ? X DC 8 Y DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? E DC 8 N4 ? ? ? 1_555 F DG 5 O6 ? ? X DC 8 Y DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? E DC 8 O2 ? ? ? 1_555 F DG 5 N2 ? ? X DC 8 Y DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 4 N1 ? ? X DT 9 Y DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 4 N6 ? ? X DT 9 Y DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 3 N3 ? ? X DA 10 Y DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 3 O4 ? ? X DA 10 Y DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N4 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DC _pdbx_validate_close_contact.auth_seq_id_1 9 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O4 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 DT _pdbx_validate_close_contact.auth_seq_id_2 7 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP1 D DG 1 ? ? 1_555 "O3'" D DT 14 ? ? 2_555 1.38 2 1 P D DG 1 ? ? 1_555 "O3'" D DT 14 ? ? 2_555 1.60 3 1 P A DC 1 ? ? 1_555 "O3'" C DA 17 ? ? 3_555 1.60 4 1 OP2 D DG 1 ? ? 1_555 "O3'" D DT 14 ? ? 2_555 1.77 5 1 OP1 A DC 1 ? ? 1_555 "O3'" C DA 17 ? ? 3_555 2.04 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B DA 9 ? ? "C2'" B DA 9 ? ? "C1'" B DA 9 ? ? 95.27 102.40 -7.13 0.80 N 2 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.24 108.30 1.94 0.30 N 3 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 110.69 108.30 2.39 0.30 N 4 1 "O3'" C DG 3 ? ? P C DC 4 ? ? OP2 C DC 4 ? ? 128.88 110.50 18.38 1.10 Y 5 1 "O3'" C DG 3 ? ? P C DC 4 ? ? OP1 C DC 4 ? ? 79.40 105.20 -25.80 2.20 Y 6 1 OP1 C DC 4 ? ? P C DC 4 ? ? OP2 C DC 4 ? ? 82.19 119.60 -37.41 1.50 N 7 1 "O5'" C DC 4 ? ? P C DC 4 ? ? OP1 C DC 4 ? ? 140.04 110.70 29.34 1.20 N 8 1 "O5'" C DC 4 ? ? P C DC 4 ? ? OP2 C DC 4 ? ? 71.52 105.70 -34.18 0.90 N 9 1 "O4'" C DT 5 ? ? "C1'" C DT 5 ? ? N1 C DT 5 ? ? 111.52 108.30 3.22 0.30 N 10 1 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 110.18 108.30 1.88 0.30 N 11 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 111.06 108.30 2.76 0.30 N 12 1 "O4'" C DT 15 ? ? "C1'" C DT 15 ? ? N1 C DT 15 ? ? 113.54 108.30 5.24 0.30 N 13 1 "O4'" D DA 11 ? ? "C1'" D DA 11 ? ? N9 D DA 11 ? ? 110.34 108.30 2.04 0.30 N 14 1 "C3'" X DG 7 ? ? "C2'" X DG 7 ? ? "C1'" X DG 7 ? ? 97.38 102.40 -5.02 0.80 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -24.3831117073 9.31515026078 51.4243415407 8.76777586938 ? 4.07594319015 ? 3.63351639871 ? 6.59311266075 ? -4.94820198585 ? 11.9978978565 ? 1.41889801538 ? -1.5313081943 ? -1.27240966595 ? 2.11340973474 ? 0.685133622163 ? 1.7746910796 ? 0.642670983134 ? 0.85536514011 ? -0.454652985059 ? -1.02246749164 ? -0.598844115765 ? 0.673715860856 ? 1.12925489683 ? -1.78432044526 ? 1.04752714344 ? 2 'X-RAY DIFFRACTION' ? refined -38.6751291966 4.49894233221 59.6203550512 8.31687555271 ? -1.39939417641 ? 1.31870272508 ? 4.62940630058 ? -5.17420942274 ? 5.19832537207 ? 0.457335974903 ? 0.768320192894 ? -0.452612132511 ? 0.35508523566 ? -0.109907835846 ? 0.0312965248954 ? 3.96750551791 ? 1.48095028763 ? -1.51025224016 ? -1.45113785414 ? 1.45615390027 ? 0.343576435006 ? 1.80755110873 ? 2.1051355904 ? 0.289726531643 ? 3 'X-RAY DIFFRACTION' ? refined -35.4761653395 0.522982866346 69.2508717321 9.0797349517 ? -3.48915851331 ? 3.41601387495 ? 6.3933291141 ? 1.5565220102 ? 8.733953641 ? 0.985188446725 ? 0.358596341415 ? 0.453187266044 ? 0.169008846461 ? 0.192769546239 ? 0.148244751846 ? 2.36288295998 ? 3.00833477909 ? 2.61714693484 ? 0.746637471992 ? 4.77138370046 ? 1.78776861179 ? -5.60759508792 ? -2.32212891806 ? 3.81024520471 ? 4 'X-RAY DIFFRACTION' ? refined -16.8976583244 2.49618595478 58.0708193047 5.59034447453 ? -4.89099179798 ? -1.14136360851 ? 5.88712538849 ? 3.02623492097 ? 10.3251346813 ? 0.610414728374 ? -0.892374790421 ? -0.461888532654 ? 1.55195017457 ? 0.894623844677 ? 0.655504105262 ? 2.48348712269 ? -0.399392429766 ? 2.69251795297 ? 1.55640583831 ? 0.695700008438 ? -0.655867251476 ? 0.06474831088 ? 0.795884729257 ? 0.362481515268 ? 5 'X-RAY DIFFRACTION' ? refined -59.2958879894 -11.6849738706 29.3996750105 9.18403145926 ? 0.604966081405 ? -3.27392428506 ? 13.7761849438 ? -1.43263939088 ? 12.8871397322 ? 0.0563626705871 ? 0.0467719287696 ? -0.0587654854775 ? 0.291176920632 ? 0.0328622552813 ? 0.0487417258755 ? 0.590812351674 ? 0.0952450461929 ? 0.345909909201 ? 1.43475178729 ? 0.0766539988358 ? 0.669585830226 ? -0.83777647637 ? 0.103472568242 ? -0.2470218278 ? 6 'X-RAY DIFFRACTION' ? refined -54.4723372286 -8.64945862127 32.2961384638 11.2834443993 ? 2.1117253004 ? -1.59911519244 ? 14.3117327521 ? -0.467584290695 ? 16.0262967989 ? 0.202260797615 ? -0.0935405239524 ? 0.0265678203984 ? 0.0587423343466 ? 0.00884751959975 ? 0.0126347496986 ? -0.94769090962 ? 0.0643731193542 ? -0.317344766658 ? 0.15075697356 ? 0.489082800391 ? 0.138408498917 ? 1.63224680585 ? -0.68633768988 ? -0.877710164461 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 14 ? ? ;(chain 'A' and resid 1 through 14) ; 2 'X-RAY DIFFRACTION' 2 B ? B 1 ? B ? B 17 ? ? ;(chain 'B' and resid 1 through 17) ; 3 'X-RAY DIFFRACTION' 3 C ? C 1 ? C ? C 17 ? ? ;(chain 'C' and resid 1 through 17) ; 4 'X-RAY DIFFRACTION' 4 D ? D 1 ? D ? D 14 ? ? ;(chain 'D' and resid 1 through 14) ; 5 'X-RAY DIFFRACTION' 5 E ? X 1 ? E ? X 10 ? ? ;(chain 'X' and resid 1 through 10) ; 6 'X-RAY DIFFRACTION' 6 F ? Y 1 ? F ? Y 10 ? ? ;(chain 'Y' and resid 1 through 10) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8SJT 'double helix' 8SJT 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 D DT 14 1_555 -0.210 0.356 0.054 -13.306 -35.623 19.225 1 A_DA2:DT14_D A 2 ? D 14 ? ? 1 1 A DC 3 1_555 D DG 13 1_555 0.184 -0.267 -0.586 -9.782 -13.180 3.802 2 A_DC3:DG13_D A 3 ? D 13 ? 19 1 1 A DG 4 1_555 D DC 12 1_555 -0.161 -0.211 -1.016 -11.354 -4.042 2.655 3 A_DG4:DC12_D A 4 ? D 12 ? 19 1 1 A DT 5 1_555 D DA 11 1_555 -0.121 -0.247 -0.816 -0.977 -1.093 4.815 4 A_DT5:DA11_D A 5 ? D 11 ? 20 1 1 A DG 6 1_555 D DC 10 1_555 -0.183 -0.196 -0.148 1.985 0.307 -2.456 5 A_DG6:DC10_D A 6 ? D 10 ? 19 1 1 A DG 7 1_555 D DC 9 1_555 -0.256 -0.246 -0.218 -6.483 -16.322 1.181 6 A_DG7:DC9_D A 7 ? D 9 ? 19 1 1 A DA 8 1_555 D DT 8 1_555 0.023 -0.048 -0.482 -14.614 -9.432 -2.021 7 A_DA8:DT8_D A 8 ? D 8 ? 20 1 1 A DC 9 1_555 B DG 8 1_555 0.108 -0.187 0.692 -2.838 -15.113 -6.921 8 A_DC9:DG8_B A 9 ? B 8 ? 19 1 1 A DA 10 1_555 B DT 7 1_555 0.267 -0.023 0.456 -2.779 -15.764 -7.128 9 A_DA10:DT7_B A 10 ? B 7 ? 20 1 1 A DG 11 1_555 B DC 6 1_555 -0.230 -0.180 -0.305 -5.295 -12.487 5.079 10 A_DG11:DC6_B A 11 ? B 6 ? 19 1 1 A DG 12 1_555 B DC 5 1_555 -0.337 -0.456 -1.409 -12.470 -9.506 9.562 11 A_DG12:DC5_B A 12 ? B 5 ? 19 1 1 A DA 13 1_555 B DT 4 1_555 0.179 -0.759 -1.922 -10.844 -2.043 12.777 12 A_DA13:DT4_B A 13 ? B 4 ? 20 1 1 A DG 14 1_555 B DC 3 1_555 -0.072 -0.237 -1.073 -8.505 9.614 -10.855 13 A_DG14:DC3_B A 14 ? B 3 ? 19 1 1 C DG 3 1_555 B DC 17 1_555 -0.185 -0.232 0.610 -6.987 -3.294 3.116 14 C_DG3:DC17_B C 3 ? B 17 ? 19 1 1 C DC 4 1_555 B DG 16 1_555 0.261 -0.335 -1.156 6.677 -4.219 2.812 15 C_DC4:DG16_B C 4 ? B 16 ? 19 1 1 C DT 5 1_555 B DA 15 1_555 0.024 0.062 -0.303 2.140 -21.035 2.746 16 C_DT5:DA15_B C 5 ? B 15 ? 20 1 1 C DC 6 1_555 B DG 14 1_555 0.339 -0.169 -0.298 2.133 -13.846 6.003 17 C_DC6:DG14_B C 6 ? B 14 ? 19 1 1 C DA 7 1_555 B DC 13 1_555 -0.246 0.199 -0.282 -0.940 -6.207 -16.682 18 C_DA7:DC13_B C 7 ? B 13 ? ? ? 1 C DG 8 1_555 B DT 12 1_555 -0.696 0.060 -0.826 -20.242 -32.957 9.815 19 C_DG8:DT12_B C 8 ? B 12 ? 28 1 1 C DC 9 1_555 B DG 11 1_555 -1.683 0.335 -1.072 -12.814 -18.666 -6.236 20 C_DC9:DG11_B C 9 ? B 11 ? ? 1 1 C DC 10 1_555 B DG 10 1_555 0.118 -0.070 0.297 -2.815 -15.142 1.601 21 C_DC10:DG10_B C 10 ? B 10 ? 19 1 1 C DT 11 1_555 B DA 9 1_555 -0.119 -0.260 0.846 2.227 -18.820 -0.287 22 C_DT11:DA9_B C 11 ? B 9 ? 20 1 1 C DG 12 1_555 D DC 7 1_555 -0.236 -0.182 -0.052 -0.193 -27.619 2.050 23 C_DG12:DC7_D C 12 ? D 7 ? 19 1 1 C DA 13 1_555 D DT 6 1_555 -0.002 -0.333 -1.710 -30.212 -31.117 14.780 24 C_DA13:DT6_D C 13 ? D 6 ? 20 1 1 C DC 14 1_555 D DG 5 1_555 0.347 -0.485 -1.377 -10.309 -13.591 14.419 25 C_DC14:DG5_D C 14 ? D 5 ? 19 1 1 C DT 15 1_555 D DA 4 1_555 0.118 -0.005 -0.441 1.267 -14.892 15.322 26 C_DT15:DA4_D C 15 ? D 4 ? 20 1 1 C DC 16 1_555 D DG 3 1_555 0.117 -0.182 -0.220 -5.967 -8.264 -2.614 27 C_DC16:DG3_D C 16 ? D 3 ? 19 1 1 C DA 17 1_555 D DT 2 1_555 -0.173 0.154 0.580 -6.648 -8.448 6.485 28 C_DA17:DT2_D C 17 ? D 2 ? 20 1 1 E DC 3 1_555 F DG 10 1_555 0.078 -0.227 0.736 1.130 -16.932 -12.551 29 X_DC3:DG10_Y X 3 ? Y 10 ? 19 1 1 E DT 4 1_555 F DA 9 1_555 -0.193 -0.076 0.073 -7.195 -23.860 -7.853 30 X_DT4:DA9_Y X 4 ? Y 9 ? 20 1 1 E DC 5 1_555 F DG 8 1_555 0.188 -0.180 -0.383 -10.974 -13.168 5.388 31 X_DC5:DG8_Y X 5 ? Y 8 ? 19 1 1 E DT 6 1_555 F DA 7 1_555 -0.243 0.117 0.031 -7.374 -14.502 -6.589 32 X_DT6:DA7_Y X 6 ? Y 7 ? 20 1 1 E DG 7 1_555 F DC 6 1_555 -0.212 -0.069 -0.206 -8.254 -16.114 -1.245 33 X_DG7:DC6_Y X 7 ? Y 6 ? 19 1 1 E DC 8 1_555 F DG 5 1_555 0.069 -0.113 0.252 -6.869 -14.771 -0.785 34 X_DC8:DG5_Y X 8 ? Y 5 ? 19 1 1 E DT 9 1_555 F DA 4 1_555 -0.303 0.035 0.543 -0.117 -5.259 -9.965 35 X_DT9:DA4_Y X 9 ? Y 4 ? 20 1 1 E DA 10 1_555 F DT 3 1_555 0.185 0.135 0.196 5.987 -3.982 -9.985 36 X_DA10:DT3_Y X 10 ? Y 3 ? 20 1 1 B DA 1 1_555 F DT 2 1_555 0.196 -0.017 0.064 -2.592 -10.618 -7.477 37 B_DA1:DT2_Y B 1 ? Y 2 ? 20 1 1 B DC 2 1_555 F DG 1 1_555 0.153 -0.306 -1.043 -7.515 -7.888 6.617 38 B_DC2:DG1_Y B 2 ? Y 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 D DT 14 1_555 A DC 3 1_555 D DG 13 1_555 -0.514 1.434 3.885 -10.762 -13.701 42.978 3.170 -0.400 3.336 -17.850 14.021 46.220 1 AA_DA2DC3:DG13DT14_DD A 2 ? D 14 ? A 3 ? D 13 ? 1 A DC 3 1_555 D DG 13 1_555 A DG 4 1_555 D DC 12 1_555 0.199 1.281 3.767 -7.758 3.673 34.863 1.466 -1.620 3.750 6.018 12.711 35.873 2 AA_DC3DG4:DC12DG13_DD A 3 ? D 13 ? A 4 ? D 12 ? 1 A DG 4 1_555 D DC 12 1_555 A DT 5 1_555 D DA 11 1_555 0.982 -1.619 2.871 -0.030 2.043 33.309 -3.112 -1.714 2.769 3.560 0.053 33.370 3 AA_DG4DT5:DA11DC12_DD A 4 ? D 12 ? A 5 ? D 11 ? 1 A DT 5 1_555 D DA 11 1_555 A DG 6 1_555 D DC 10 1_555 -1.170 0.193 3.419 -1.076 2.166 33.620 -0.037 1.833 3.459 3.738 1.858 33.705 4 AA_DT5DG6:DC10DA11_DD A 5 ? D 11 ? A 6 ? D 10 ? 1 A DG 6 1_555 D DC 10 1_555 A DG 7 1_555 D DC 9 1_555 1.229 -0.413 3.622 7.668 7.759 36.847 -1.728 -0.783 3.640 11.958 -11.817 38.374 5 AA_DG6DG7:DC9DC10_DD A 6 ? D 10 ? A 7 ? D 9 ? 1 A DG 7 1_555 D DC 9 1_555 A DA 8 1_555 D DT 8 1_555 0.471 -0.273 3.540 -2.644 -2.327 40.992 -0.117 -0.980 3.514 -3.315 3.768 41.137 6 AA_DG7DA8:DT8DC9_DD A 7 ? D 9 ? A 8 ? D 8 ? 1 A DA 8 1_555 D DT 8 1_555 A DC 9 1_555 B DG 8 1_555 -1.714 -1.855 2.839 -16.992 12.027 24.739 -5.298 0.323 2.399 23.464 33.149 32.228 7 AA_DA8DC9:DG8DT8_BD A 8 ? D 8 ? A 9 ? B 8 ? 1 A DC 9 1_555 B DG 8 1_555 A DA 10 1_555 B DT 7 1_555 0.184 0.660 2.915 3.443 4.676 42.475 0.482 0.059 2.973 6.419 -4.726 42.852 8 AA_DC9DA10:DT7DG8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A DA 10 1_555 B DT 7 1_555 A DG 11 1_555 B DC 6 1_555 -0.111 1.251 3.482 3.492 -1.402 33.781 2.378 0.779 3.400 -2.404 -5.987 33.984 9 AA_DA10DG11:DC6DT7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A DG 11 1_555 B DC 6 1_555 A DG 12 1_555 B DC 5 1_555 -1.334 1.164 3.803 -8.020 6.688 39.589 0.762 0.825 4.121 9.671 11.598 40.890 10 AA_DG11DG12:DC5DC6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A DG 12 1_555 B DC 5 1_555 A DA 13 1_555 B DT 4 1_555 0.518 1.138 3.774 -2.355 4.571 47.340 0.983 -0.862 3.833 5.673 2.923 47.603 11 AA_DG12DA13:DT4DC5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 A DA 13 1_555 B DT 4 1_555 A DG 14 1_555 B DC 3 1_555 -3.383 0.935 4.425 -4.302 0.001 36.861 1.469 4.505 4.776 0.002 6.775 37.103 12 AA_DA13DG14:DC3DT4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 C DG 3 1_555 B DC 17 1_555 C DC 4 1_555 B DG 16 1_555 0.815 0.889 3.498 9.525 0.305 40.680 1.213 -0.043 3.598 0.431 -13.478 41.735 13 CC_DG3DC4:DG16DC17_BB C 3 ? B 17 ? C 4 ? B 16 ? 1 C DC 4 1_555 B DG 16 1_555 C DT 5 1_555 B DA 15 1_555 2.888 -0.635 2.908 5.942 10.689 26.198 -3.532 -4.538 2.997 22.114 -12.294 28.867 14 CC_DC4DT5:DA15DG16_BB C 4 ? B 16 ? C 5 ? B 15 ? 1 C DT 5 1_555 B DA 15 1_555 C DC 6 1_555 B DG 14 1_555 0.344 -0.428 3.019 4.762 5.194 28.033 -1.920 0.284 2.912 10.513 -9.639 28.888 15 CC_DT5DC6:DG14DA15_BB C 5 ? B 15 ? C 6 ? B 14 ? 1 C DC 6 1_555 B DG 14 1_555 C DA 7 1_555 B DC 13 1_555 -1.529 0.392 3.089 -0.540 12.156 30.319 -1.359 2.630 3.044 22.153 0.984 32.616 16 CC_DC6DA7:DC13DG14_BB C 6 ? B 14 ? C 7 ? B 13 ? 1 C DA 7 1_555 B DC 13 1_555 C DG 8 1_555 B DT 12 1_555 2.454 0.592 3.809 18.157 15.978 41.545 -0.998 -1.064 4.414 20.570 -23.374 47.802 17 CC_DA7DG8:DT12DC13_BB C 7 ? B 13 ? C 8 ? B 12 ? 1 C DG 8 1_555 B DT 12 1_555 C DC 9 1_555 B DG 11 1_555 -1.369 0.929 2.462 -5.842 1.141 38.072 1.297 1.504 2.661 1.736 8.889 38.518 18 CC_DG8DC9:DG11DT12_BB C 8 ? B 12 ? C 9 ? B 11 ? 1 C DC 9 1_555 B DG 11 1_555 C DC 10 1_555 B DG 10 1_555 2.220 0.346 2.909 -8.720 3.110 43.257 0.219 -3.628 2.457 4.162 11.670 44.190 19 CC_DC9DC10:DG10DG11_BB C 9 ? B 11 ? C 10 ? B 10 ? 1 C DC 10 1_555 B DG 10 1_555 C DT 11 1_555 B DA 9 1_555 -0.037 -0.812 2.866 -5.407 0.326 28.256 -1.698 -0.988 2.815 0.661 10.948 28.761 20 CC_DC10DT11:DA9DG10_BB C 10 ? B 10 ? C 11 ? B 9 ? 1 C DT 11 1_555 B DA 9 1_555 C DG 12 1_555 D DC 7 1_555 -1.891 -1.517 2.631 -6.959 17.005 30.737 -4.329 2.325 1.929 29.054 11.890 35.696 21 CC_DT11DG12:DC7DA9_DB C 11 ? B 9 ? C 12 ? D 7 ? 1 C DG 12 1_555 D DC 7 1_555 C DA 13 1_555 D DT 6 1_555 0.565 1.732 4.251 6.832 -2.201 55.107 2.026 -0.089 4.222 -2.367 -7.350 55.536 22 CC_DG12DA13:DT6DC7_DD C 12 ? D 7 ? C 13 ? D 6 ? 1 C DA 13 1_555 D DT 6 1_555 C DC 14 1_555 D DG 5 1_555 -0.872 1.601 3.049 -9.311 1.068 33.659 2.511 0.077 3.217 1.801 15.704 34.903 23 CC_DA13DC14:DG5DT6_DD C 13 ? D 6 ? C 14 ? D 5 ? 1 C DC 14 1_555 D DG 5 1_555 C DT 15 1_555 D DA 4 1_555 1.909 2.416 2.926 -0.556 0.873 29.975 4.507 -3.793 2.958 1.687 1.074 29.992 24 CC_DC14DT15:DA4DG5_DD C 14 ? D 5 ? C 15 ? D 4 ? 1 C DT 15 1_555 D DA 4 1_555 C DC 16 1_555 D DG 3 1_555 -1.715 0.074 3.118 -8.388 6.080 37.550 -0.636 1.544 3.381 9.233 12.736 38.904 25 CC_DT15DC16:DG3DA4_DD C 15 ? D 4 ? C 16 ? D 3 ? 1 C DC 16 1_555 D DG 3 1_555 C DA 17 1_555 D DT 2 1_555 1.749 -0.052 2.759 -2.018 7.886 30.127 -1.336 -3.571 2.545 14.834 3.795 31.183 26 CC_DC16DA17:DT2DG3_DD C 16 ? D 3 ? C 17 ? D 2 ? 1 E DC 3 1_555 F DG 10 1_555 E DT 4 1_555 F DA 9 1_555 -0.390 -0.408 3.345 3.637 -4.028 33.021 -0.027 1.293 3.310 -7.027 -6.345 33.452 27 XX_DC3DT4:DA9DG10_YY X 3 ? Y 10 ? X 4 ? Y 9 ? 1 E DT 4 1_555 F DA 9 1_555 E DC 5 1_555 F DG 8 1_555 0.052 0.295 3.569 -6.191 -2.313 46.247 0.583 -0.628 3.517 -2.927 7.836 46.691 28 XX_DT4DC5:DG8DA9_YY X 4 ? Y 9 ? X 5 ? Y 8 ? 1 E DC 5 1_555 F DG 8 1_555 E DT 6 1_555 F DA 7 1_555 -0.499 1.310 4.042 -7.594 3.687 30.545 1.531 -0.878 4.169 6.836 14.080 31.663 29 XX_DC5DT6:DA7DG8_YY X 5 ? Y 8 ? X 6 ? Y 7 ? 1 E DT 6 1_555 F DA 7 1_555 E DG 7 1_555 F DC 6 1_555 -0.786 0.957 2.988 -4.292 1.158 34.486 1.437 0.705 3.090 1.944 7.203 34.762 30 XX_DT6DG7:DC6DA7_YY X 6 ? Y 7 ? X 7 ? Y 6 ? 1 E DG 7 1_555 F DC 6 1_555 E DC 8 1_555 F DG 5 1_555 -0.110 0.829 3.126 -7.317 -3.096 45.049 1.325 -0.466 3.046 -4.004 9.463 45.708 31 XX_DG7DC8:DG5DC6_YY X 7 ? Y 6 ? X 8 ? Y 5 ? 1 E DC 8 1_555 F DG 5 1_555 E DT 9 1_555 F DA 4 1_555 -1.026 -0.672 3.195 -2.440 6.943 33.368 -2.209 1.373 3.063 11.912 4.186 34.147 32 XX_DC8DT9:DA4DG5_YY X 8 ? Y 5 ? X 9 ? Y 4 ? 1 E DT 9 1_555 F DA 4 1_555 E DA 10 1_555 F DT 3 1_555 -1.445 -0.854 2.819 -2.294 8.331 34.403 -2.439 2.088 2.635 13.817 3.805 35.440 33 XX_DT9DA10:DT3DA4_YY X 9 ? Y 4 ? X 10 ? Y 3 ? 1 E DA 10 1_555 F DT 3 1_555 B DA 1 1_555 F DT 2 1_555 0.028 -1.493 3.520 -3.864 3.027 26.885 -3.953 -1.069 3.299 6.441 8.224 27.322 34 XB_DA10DA1:DT2DT3_YY X 10 ? Y 3 ? B 1 ? Y 2 ? 1 B DA 1 1_555 F DT 2 1_555 B DC 2 1_555 F DG 1 1_555 0.351 -0.664 3.685 1.611 1.638 38.340 -1.238 -0.308 3.666 2.492 -2.451 38.406 35 BB_DA1DC2:DG1DT2_YY B 1 ? Y 2 ? B 2 ? Y 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Office of Naval Research (ONR)' 'United States' N000141912596 1 'Department of Energy (DOE, United States)' 'United States' DE-SC0007991 2 'National Science Foundation (NSF, United States)' 'United States' 2106790 3 'Human Frontier Science Program (HFSP)' France RPG0010/2017 4 'National Science Foundation (NSF, United States)' 'United States' DMR-1420073 5 'National Aeronautic Space Administration (NASA, United States)' 'United States' '2020 NASA Center Innovation Fund' 6 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5W6W _pdbx_initial_refinement_model.details 'tensegrity triangle' # _space_group.name_H-M_alt 'H 3' _space_group.name_Hall 'H 3' _space_group.IT_number 146 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8SJT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.004712 _atom_sites.fract_transf_matrix[1][2] 0.002720 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005440 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006087 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_