data_8SJW # _entry.id 8SJW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8SJW pdb_00008sjw 10.2210/pdb8sjw/pdb WWPDB D_1000273719 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-04-24 2 'Structure model' 1 1 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8SJW _pdbx_database_status.recvd_initial_deposition_date 2023-04-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email rs17@nyu.edu _pdbx_contact_author.name_first Ruojie _pdbx_contact_author.name_last Sha _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0807-734X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Janowski, J.' 1 0000-0002-6990-5719 'Vecchioni, S.' 2 0000-0001-8243-650X 'Sha, R.' 3 0000-0002-0807-734X 'Ohayon, Y.P.' 4 0000-0001-7500-4282 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 121 _citation.language ? _citation.page_first e2321992121 _citation.page_last e2321992121 _citation.title 'Engineering tertiary chirality in helical biopolymers.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2321992121 _citation.pdbx_database_id_PubMed 38684000 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Janowski, J.' 1 ? primary 'Pham, V.A.B.' 2 0000-0001-5074-7303 primary 'Vecchioni, S.' 3 0000-0001-8243-650X primary 'Woloszyn, K.' 4 ? primary 'Lu, B.' 5 0000-0001-6424-2197 primary 'Zou, Y.' 6 ? primary 'Erkalo, B.' 7 ? primary 'Perren, L.' 8 0000-0001-9169-1780 primary 'Rueb, J.' 9 ? primary 'Madnick, J.' 10 0000-0003-1026-8409 primary 'Mao, C.' 11 0000-0001-7516-8666 primary 'Saito, M.' 12 0000-0003-0795-8548 primary 'Ohayon, Y.P.' 13 0000-0001-7500-4282 primary 'Jonoska, N.' 14 ? primary 'Sha, R.' 15 0000-0002-0807-734X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*CP*AP*TP*CP*TP*AP*GP*CP*TP*CP*GP*TP*GP*GP*AP*CP*TP*GP*AP*T)-3') ; 6124.965 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*CP*AP*TP*CP*AP*GP*TP*GP*GP*CP*AP*GP*T)-3') ; 4295.803 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*AP*AP*CP*TP*GP*CP*CP*TP*GP*AP*AP*TP*TP*AP*CP*TP*GP*AP*CP*CP*G)-3') ; 6736.367 1 ? ? ? ? 4 polymer syn 'DNA (28-MER)' 8614.567 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DT)(DC)(DT)(DA)(DG)(DC)(DT)(DC)(DG)(DT)(DG)(DG)(DA)(DC)(DT)(DG)(DA)(DT)' CATCTAGCTCGTGGACTGAT A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DT)(DC)(DA)(DG)(DT)(DG)(DG)(DC)(DA)(DG)(DT)' TCATCAGTGGCAGT B ? 3 polydeoxyribonucleotide no no ;(DG)(DA)(DA)(DC)(DT)(DG)(DC)(DC)(DT)(DG)(DA)(DA)(DT)(DT)(DA)(DC)(DT)(DG)(DA)(DC) (DC)(DG) ; GAACTGCCTGAATTACTGACCG C ? 4 polydeoxyribonucleotide no no ;(DC)(DG)(DG)(DT)(DC)(DA)(DG)(DT)(DA)(DA)(DT)(DT)(DC)(DA)(DC)(DC)(DA)(DC)(DG)(DA) (DG)(DC)(DT)(DA)(DG)(DA)(DT)(DG) ; CGGTCAGTAATTCACCACGAGCTAGATG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DT n 1 10 DC n 1 11 DG n 1 12 DT n 1 13 DG n 1 14 DG n 1 15 DA n 1 16 DC n 1 17 DT n 1 18 DG n 1 19 DA n 1 20 DT n 2 1 DT n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 DA n 2 7 DG n 2 8 DT n 2 9 DG n 2 10 DG n 2 11 DC n 2 12 DA n 2 13 DG n 2 14 DT n 3 1 DG n 3 2 DA n 3 3 DA n 3 4 DC n 3 5 DT n 3 6 DG n 3 7 DC n 3 8 DC n 3 9 DT n 3 10 DG n 3 11 DA n 3 12 DA n 3 13 DT n 3 14 DT n 3 15 DA n 3 16 DC n 3 17 DT n 3 18 DG n 3 19 DA n 3 20 DC n 3 21 DC n 3 22 DG n 4 1 DC n 4 2 DG n 4 3 DG n 4 4 DT n 4 5 DC n 4 6 DA n 4 7 DG n 4 8 DT n 4 9 DA n 4 10 DA n 4 11 DT n 4 12 DT n 4 13 DC n 4 14 DA n 4 15 DC n 4 16 DC n 4 17 DA n 4 18 DC n 4 19 DG n 4 20 DA n 4 21 DG n 4 22 DC n 4 23 DT n 4 24 DA n 4 25 DG n 4 26 DA n 4 27 DT n 4 28 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 20 'synthetic construct' ? 32630 ? 2 1 sample 1 14 'synthetic construct' ? 32630 ? 3 1 sample 1 22 'synthetic construct' ? 32630 ? 4 1 sample 1 28 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 101 101 DC DC A . n A 1 2 DA 2 102 102 DA DA A . n A 1 3 DT 3 103 103 DT DT A . n A 1 4 DC 4 104 104 DC DC A . n A 1 5 DT 5 105 105 DT DT A . n A 1 6 DA 6 106 106 DA DA A . n A 1 7 DG 7 107 107 DG DG A . n A 1 8 DC 8 108 108 DC DC A . n A 1 9 DT 9 109 109 DT DT A . n A 1 10 DC 10 110 110 DC DC A . n A 1 11 DG 11 111 111 DG DG A . n A 1 12 DT 12 112 112 DT DT A . n A 1 13 DG 13 113 113 DG DG A . n A 1 14 DG 14 114 114 DG DG A . n A 1 15 DA 15 115 115 DA DA A . n A 1 16 DC 16 116 116 DC DC A . n A 1 17 DT 17 117 117 DT DT A . n A 1 18 DG 18 118 118 DG DG A . n A 1 19 DA 19 119 119 DA DA A . n A 1 20 DT 20 120 120 DT DT A . n B 2 1 DT 1 101 101 DT DT B . n B 2 2 DC 2 102 102 DC DC B . n B 2 3 DA 3 103 103 DA DA B . n B 2 4 DT 4 104 104 DT DT B . n B 2 5 DC 5 105 105 DC DC B . n B 2 6 DA 6 106 106 DA DA B . n B 2 7 DG 7 107 107 DG DG B . n B 2 8 DT 8 108 108 DT DT B . n B 2 9 DG 9 109 109 DG DG B . n B 2 10 DG 10 110 110 DG DG B . n B 2 11 DC 11 111 111 DC DC B . n B 2 12 DA 12 112 112 DA DA B . n B 2 13 DG 13 113 113 DG DG B . n B 2 14 DT 14 114 114 DT DT B . n C 3 1 DG 1 101 101 DG DG C . n C 3 2 DA 2 102 102 DA DA C . n C 3 3 DA 3 103 103 DA DA C . n C 3 4 DC 4 104 104 DC DC C . n C 3 5 DT 5 105 105 DT DT C . n C 3 6 DG 6 106 106 DG DG C . n C 3 7 DC 7 107 107 DC DC C . n C 3 8 DC 8 108 108 DC DC C . n C 3 9 DT 9 109 109 DT DT C . n C 3 10 DG 10 110 110 DG DG C . n C 3 11 DA 11 111 111 DA DA C . n C 3 12 DA 12 112 112 DA DA C . n C 3 13 DT 13 113 113 DT DT C . n C 3 14 DT 14 114 114 DT DT C . n C 3 15 DA 15 115 115 DA DA C . n C 3 16 DC 16 116 116 DC DC C . n C 3 17 DT 17 117 117 DT DT C . n C 3 18 DG 18 118 118 DG DG C . n C 3 19 DA 19 119 119 DA DA C . n C 3 20 DC 20 120 120 DC DC C . n C 3 21 DC 21 121 121 DC DC C . n C 3 22 DG 22 122 122 DG DG C . n D 4 1 DC 1 101 101 DC DC D . n D 4 2 DG 2 102 102 DG DG D . n D 4 3 DG 3 103 103 DG DG D . n D 4 4 DT 4 104 104 DT DT D . n D 4 5 DC 5 105 105 DC DC D . n D 4 6 DA 6 106 106 DA DA D . n D 4 7 DG 7 107 107 DG DG D . n D 4 8 DT 8 108 108 DT DT D . n D 4 9 DA 9 109 109 DA DA D . n D 4 10 DA 10 110 110 DA DA D . n D 4 11 DT 11 111 111 DT DT D . n D 4 12 DT 12 112 112 DT DT D . n D 4 13 DC 13 113 113 DC DC D . n D 4 14 DA 14 114 114 DA DA D . n D 4 15 DC 15 115 115 DC DC D . n D 4 16 DC 16 116 116 DC DC D . n D 4 17 DA 17 117 117 DA DA D . n D 4 18 DC 18 118 118 DC DC D . n D 4 19 DG 19 119 119 DG DG D . n D 4 20 DA 20 120 120 DA DA D . n D 4 21 DG 21 121 121 DG DG D . n D 4 22 DC 22 122 122 DC DC D . n D 4 23 DT 23 123 123 DT DT D . n D 4 24 DA 24 124 124 DA DA D . n D 4 25 DG 25 125 125 DG DG D . n D 4 26 DA 26 126 126 DA DA D . n D 4 27 DT 27 127 127 DT DT D . n D 4 28 DG 28 128 128 DG DG D . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8SJW _cell.details ? _cell.formula_units_Z ? _cell.length_a 227.624 _cell.length_a_esd ? _cell.length_b 227.624 _cell.length_b_esd ? _cell.length_c 91.414 _cell.length_c_esd ? _cell.volume 4101846.898 _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8SJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'H 3' _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8SJW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 17.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 93.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details '338K-293K at 0.4K/hr' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM MOPS, 1.25 M magnesium sulfate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-07-24 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00743 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00743 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 254.27 _reflns.entry_id 8SJW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 7.318 _reflns.d_resolution_low 82.931 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1653 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 81.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 7.318 8.346 ? 0.9 ? ? ? ? 209 ? ? ? ? ? ? ? ? ? ? ? 11.1 ? ? ? ? ? ? 1 1 0.365 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 16.578 82.931 ? 20.1 ? ? ? ? 206 ? ? ? ? ? ? ? ? ? ? ? 11.0 ? ? ? ? ? ? 2 1 0.999 ? ? 99.5 ? ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 574.24 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8SJW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 7.64 _refine.ls_d_res_low 41.47 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1593 _refine.ls_number_reflns_R_free 109 _refine.ls_number_reflns_R_work 1484 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 74.72 _refine.ls_percent_reflns_R_free 6.84 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1787 _refine.ls_R_factor_R_free 0.1924 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1770 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.96 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 5W6W' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.7357 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5218 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 7.64 _refine_hist.d_res_low 41.47 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1716 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1716 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0088 ? 1922 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.8931 ? 2958 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0452 ? 334 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0046 ? 84 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 38.8372 ? 826 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 7.64 _refine_ls_shell.d_res_low 41.47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 109 _refine_ls_shell.number_reflns_R_work 1484 _refine_ls_shell.percent_reflns_obs 74.72 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1770 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.1924 # _struct.entry_id 8SJW _struct.title '[4T28] Self-assembling right-handed tensegrity triangle with 28 interjunction base pairs and R3 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8SJW _struct_keywords.text 'Tensegrity triangle, DNA nanotechnology, nanomaterials, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8SJW 8SJW ? 1 ? 1 2 PDB 8SJW 8SJW ? 2 ? 1 3 PDB 8SJW 8SJW ? 3 ? 1 4 PDB 8SJW 8SJW ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8SJW A 1 ? 20 ? 8SJW 101 ? 120 ? 101 120 2 2 8SJW B 1 ? 14 ? 8SJW 101 ? 114 ? 101 114 3 3 8SJW C 1 ? 22 ? 8SJW 101 ? 122 ? 101 122 4 4 8SJW D 1 ? 28 ? 8SJW 101 ? 128 ? 101 128 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 D DG 28 N1 ? ? A DC 101 D DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 D DG 28 O6 ? ? A DC 101 D DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 D DG 28 N2 ? ? A DC 101 D DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 D DT 27 N3 ? ? A DA 102 D DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 D DT 27 O4 ? ? A DA 102 D DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 D DA 26 N1 ? ? A DT 103 D DA 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 D DA 26 N6 ? ? A DT 103 D DA 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 D DG 25 N1 ? ? A DC 104 D DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 D DG 25 O6 ? ? A DC 104 D DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 D DG 25 N2 ? ? A DC 104 D DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 D DA 24 N1 ? ? A DT 105 D DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 D DA 24 N6 ? ? A DT 105 D DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 D DT 23 N3 ? ? A DA 106 D DT 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 D DT 23 O4 ? ? A DA 106 D DT 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 D DC 22 N3 ? ? A DG 107 D DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 D DC 22 O2 ? ? A DG 107 D DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 D DC 22 N4 ? ? A DG 107 D DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 D DG 21 N1 ? ? A DC 108 D DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 D DG 21 O6 ? ? A DC 108 D DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 D DG 21 N2 ? ? A DC 108 D DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 D DA 20 N1 ? ? A DT 109 D DA 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 D DA 20 N6 ? ? A DT 109 D DA 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 D DG 19 N1 ? ? A DC 110 D DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 D DG 19 O6 ? ? A DC 110 D DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 D DG 19 N2 ? ? A DC 110 D DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N1 ? ? ? 1_555 D DC 18 N3 ? ? A DG 111 D DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N2 ? ? ? 1_555 D DC 18 O2 ? ? A DG 111 D DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 O6 ? ? ? 1_555 D DC 18 N4 ? ? A DG 111 D DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 N3 ? ? ? 1_555 D DA 17 N1 ? ? A DT 112 D DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 O4 ? ? ? 1_555 D DA 17 N6 ? ? A DT 112 D DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N1 ? ? ? 1_555 D DC 16 O2 ? ? A DG 113 D DC 116 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog32 hydrog ? ? A DG 14 N1 ? ? ? 1_555 D DC 15 O2 ? ? A DG 114 D DC 115 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog33 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 115 B DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 115 B DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 116 B DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 116 B DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 116 B DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 117 B DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 117 B DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 18 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 118 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 18 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 118 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 18 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 118 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 19 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 119 B DT 104 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog44 hydrog ? ? A DT 20 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 120 B DA 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DT 20 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 120 B DA 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 109 C DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 109 C DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 109 C DC 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 110 C DC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 110 C DC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 110 C DC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 111 C DG 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 111 C DG 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 111 C DG 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 112 C DT 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 112 C DT 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DA 3 N1 ? ? B DG 113 C DA 103 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog58 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DA 3 N6 ? ? B DG 113 C DA 103 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog59 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 113 C DC 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 113 C DC 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 113 C DC 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DT 14 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 114 C DA 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DT 14 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 114 C DA 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 109 D DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 109 D DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 13 N3 ? ? C DG 110 D DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 13 O2 ? ? C DG 110 D DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 13 N4 ? ? C DG 110 D DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 111 D DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 111 D DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 11 N3 ? ? C DA 112 D DT 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 11 O4 ? ? C DA 112 D DT 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C DT 13 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 113 D DA 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C DT 13 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 113 D DA 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C DT 14 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 114 D DA 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C DT 14 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 114 D DA 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C DA 15 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 115 D DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C DA 15 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 115 D DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C DC 16 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 116 D DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C DC 16 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 116 D DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C DC 16 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 116 D DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C DT 17 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 117 D DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C DT 17 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 117 D DA 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C DG 18 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 118 D DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C DG 18 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 118 D DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C DG 18 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 118 D DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C DA 19 N1 ? ? ? 1_555 D DG 3 N1 ? ? C DA 119 D DG 103 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog88 hydrog ? ? C DA 19 N6 ? ? ? 1_555 D DG 3 O6 ? ? C DA 119 D DG 103 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog89 hydrog ? ? C DA 19 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 119 D DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C DA 19 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 119 D DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C DC 20 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 120 D DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C DC 20 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 120 D DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? C DC 20 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 120 D DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C DC 21 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 121 D DG 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C DC 21 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 121 D DG 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C DC 21 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 121 D DG 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? C DG 22 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 122 D DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? C DG 22 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 122 D DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C DG 22 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 122 D DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N4 B DC 102 ? ? 1_555 N2 C DG 101 ? ? 8_554 1.47 2 1 C7 B DT 101 ? ? 1_555 N1 C DA 102 ? ? 8_554 1.80 3 1 O4 B DT 101 ? ? 1_555 N3 C DA 102 ? ? 8_554 1.88 4 1 O4 B DT 101 ? ? 1_555 C2 C DA 102 ? ? 8_554 2.03 5 1 C7 B DT 101 ? ? 1_555 C2 C DA 102 ? ? 8_554 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 107 ? ? "C1'" A DG 107 ? ? N9 A DG 107 ? ? 110.37 108.30 2.07 0.30 N 2 1 "O4'" A DT 109 ? ? "C1'" A DT 109 ? ? N1 A DT 109 ? ? 112.59 108.30 4.29 0.30 N 3 1 "O4'" A DG 113 ? ? "C1'" A DG 113 ? ? N9 A DG 113 ? ? 110.60 108.30 2.30 0.30 N 4 1 "O4'" C DG 118 ? ? "C1'" C DG 118 ? ? N9 C DG 118 ? ? 110.98 108.30 2.68 0.30 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8SJW 'double helix' 8SJW 'a-form double helix' 8SJW 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 D DG 28 1_555 0.699 -0.483 0.262 12.548 -0.891 0.413 1 A_DC101:DG128_D A 101 ? D 128 ? 19 1 1 A DA 2 1_555 D DT 27 1_555 -0.080 -0.299 -0.167 2.719 -6.712 -0.233 2 A_DA102:DT127_D A 102 ? D 127 ? 20 1 1 A DT 3 1_555 D DA 26 1_555 -0.709 -0.320 -0.422 -3.442 -2.584 -1.960 3 A_DT103:DA126_D A 103 ? D 126 ? 20 1 1 A DC 4 1_555 D DG 25 1_555 -0.244 -0.387 -0.470 -3.948 0.602 -1.996 4 A_DC104:DG125_D A 104 ? D 125 ? 19 1 1 A DT 5 1_555 D DA 24 1_555 -0.724 -0.134 -0.586 -2.111 -0.607 -15.197 5 A_DT105:DA124_D A 105 ? D 124 ? 20 1 1 A DA 6 1_555 D DT 23 1_555 -0.621 -0.421 0.528 9.036 -17.202 -10.430 6 A_DA106:DT123_D A 106 ? D 123 ? 20 1 1 A DG 7 1_555 D DC 22 1_555 -0.286 -0.467 0.426 0.782 -15.904 -0.509 7 A_DG107:DC122_D A 107 ? D 122 ? 19 1 1 A DC 8 1_555 D DG 21 1_555 -1.049 -0.207 -0.012 -4.776 -12.427 -5.091 8 A_DC108:DG121_D A 108 ? D 121 ? 19 1 1 A DT 9 1_555 D DA 20 1_555 0.759 -0.417 -0.119 -0.941 -4.553 -1.379 9 A_DT109:DA120_D A 109 ? D 120 ? 20 1 1 A DC 10 1_555 D DG 19 1_555 0.217 -0.385 0.201 -6.065 -8.687 0.368 10 A_DC110:DG119_D A 110 ? D 119 ? 19 1 1 A DG 11 1_555 D DC 18 1_555 -0.571 -0.411 0.016 -6.073 -0.588 0.727 11 A_DG111:DC118_D A 111 ? D 118 ? 19 1 1 A DT 12 1_555 D DA 17 1_555 0.169 -0.483 0.719 -0.047 -2.004 -0.566 12 A_DT112:DA117_D A 112 ? D 117 ? 20 1 1 A DG 13 1_555 D DC 16 1_555 -2.067 -0.196 0.302 3.356 5.555 20.090 13 A_DG113:DC116_D A 113 ? D 116 ? ? 1 1 A DG 14 1_555 D DC 15 1_555 -3.306 -0.945 -0.584 6.755 -7.158 7.673 14 A_DG114:DC115_D A 114 ? D 115 ? ? ? 1 A DA 15 1_555 B DT 8 1_555 0.163 -0.090 -0.051 0.339 -12.431 10.496 15 A_DA115:DT108_B A 115 ? B 108 ? 20 1 1 A DC 16 1_555 B DG 7 1_555 0.495 -0.325 0.486 1.325 -6.009 2.021 16 A_DC116:DG107_B A 116 ? B 107 ? 19 1 1 A DT 17 1_555 B DA 6 1_555 -0.313 -0.219 -0.362 9.603 -19.367 14.609 17 A_DT117:DA106_B A 117 ? B 106 ? 20 1 1 A DG 18 1_555 B DC 5 1_555 -1.461 -0.476 0.300 8.795 -26.246 9.964 18 A_DG118:DC105_B A 118 ? B 105 ? 19 1 1 A DA 19 1_555 B DT 4 1_555 0.446 0.094 0.847 -9.953 -29.473 21.498 19 A_DA119:DT104_B A 119 ? B 104 ? ? 1 1 A DT 20 1_555 B DA 3 1_555 0.152 -0.302 0.817 -25.610 -24.430 0.438 20 A_DT120:DA103_B A 120 ? B 103 ? 20 1 1 C DA 3 1_555 B DT 14 1_555 -0.201 -0.547 0.982 -0.496 -10.543 -2.494 21 C_DA103:DT114_B C 103 ? B 114 ? 20 1 1 C DC 4 1_555 B DG 13 1_555 0.361 -0.554 0.677 -0.037 -13.469 -3.995 22 C_DC104:DG113_B C 104 ? B 113 ? 19 1 1 C DT 5 1_555 B DA 12 1_555 0.262 -0.474 -0.014 1.941 -16.946 -3.586 23 C_DT105:DA112_B C 105 ? B 112 ? 20 1 1 C DG 6 1_555 B DC 11 1_555 -0.083 -0.400 0.705 8.423 -13.025 -7.226 24 C_DG106:DC111_B C 106 ? B 111 ? 19 1 1 C DC 7 1_555 B DG 10 1_555 0.114 -0.183 0.501 2.987 -16.796 2.573 25 C_DC107:DG110_B C 107 ? B 110 ? 19 1 1 C DC 8 1_555 B DG 9 1_555 -0.631 -0.428 0.652 -8.724 -7.403 -7.848 26 C_DC108:DG109_B C 108 ? B 109 ? 19 1 1 C DT 9 1_555 D DA 14 1_555 -0.907 -0.040 0.304 2.084 -6.036 11.402 27 C_DT109:DA114_D C 109 ? D 114 ? 20 1 1 C DG 10 1_555 D DC 13 1_555 0.815 0.169 0.148 2.199 -5.619 12.959 28 C_DG110:DC113_D C 110 ? D 113 ? 19 1 1 C DA 11 1_555 D DT 12 1_555 -0.457 -0.242 0.070 10.691 -14.224 -12.063 29 C_DA111:DT112_D C 111 ? D 112 ? 20 1 1 C DA 12 1_555 D DT 11 1_555 -0.087 -0.443 0.369 5.462 -17.423 -3.428 30 C_DA112:DT111_D C 112 ? D 111 ? 20 1 1 C DT 13 1_555 D DA 10 1_555 -0.590 -0.395 0.245 1.479 -8.603 -3.420 31 C_DT113:DA110_D C 113 ? D 110 ? 20 1 1 C DT 14 1_555 D DA 9 1_555 -0.870 -0.296 0.337 -5.419 -9.966 -9.071 32 C_DT114:DA109_D C 114 ? D 109 ? 20 1 1 C DA 15 1_555 D DT 8 1_555 -0.137 -0.500 0.264 -7.517 -11.142 -4.511 33 C_DA115:DT108_D C 115 ? D 108 ? 20 1 1 C DC 16 1_555 D DG 7 1_555 0.519 -0.468 0.145 -4.965 -5.360 -0.108 34 C_DC116:DG107_D C 116 ? D 107 ? 19 1 1 C DT 17 1_555 D DA 6 1_555 -0.457 -0.359 0.050 -4.099 -1.492 -3.780 35 C_DT117:DA106_D C 117 ? D 106 ? 20 1 1 C DG 18 1_555 D DC 5 1_555 -0.662 -0.556 0.454 3.977 3.174 -0.470 36 C_DG118:DC105_D C 118 ? D 105 ? 19 1 1 C DA 19 1_555 D DT 4 1_555 0.108 -0.441 1.023 6.965 0.008 -0.086 37 C_DA119:DT104_D C 119 ? D 104 ? 20 1 1 C DC 20 1_555 D DG 3 1_555 0.237 -0.622 1.241 6.558 -3.931 1.487 38 C_DC120:DG103_D C 120 ? D 103 ? 19 1 1 C DC 21 1_555 D DG 2 1_555 0.045 -0.636 0.963 4.432 -10.233 -4.311 39 C_DC121:DG102_D C 121 ? D 102 ? 19 1 1 C DG 22 1_555 D DC 1 1_555 -0.235 -0.715 1.113 -0.167 -16.164 -12.035 40 C_DG122:DC101_D C 122 ? D 101 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 D DG 28 1_555 A DA 2 1_555 D DT 27 1_555 -0.913 -0.451 3.270 -0.788 1.797 41.720 -0.821 1.198 3.265 2.522 1.105 41.764 1 AA_DC101DA102:DT127DG128_DD A 101 ? D 128 ? A 102 ? D 127 ? 1 A DA 2 1_555 D DT 27 1_555 A DT 3 1_555 D DA 26 1_555 -0.092 -2.217 3.441 0.553 -2.184 31.789 -3.610 0.277 3.579 -3.981 -1.008 31.867 2 AA_DA102DT103:DA126DT127_DD A 102 ? D 127 ? A 103 ? D 126 ? 1 A DT 3 1_555 D DA 26 1_555 A DC 4 1_555 D DG 25 1_555 -0.935 -0.983 3.405 1.265 -2.396 40.836 -1.132 1.482 3.425 -3.429 -1.810 40.922 3 AA_DT103DC104:DG125DA126_DD A 103 ? D 126 ? A 104 ? D 125 ? 1 A DC 4 1_555 D DG 25 1_555 A DT 5 1_555 D DA 24 1_555 -1.204 -0.644 3.345 2.007 -1.928 31.206 -0.823 2.614 3.296 -3.576 -3.722 31.327 4 AA_DC104DT105:DA124DG125_DD A 104 ? D 125 ? A 105 ? D 124 ? 1 A DT 5 1_555 D DA 24 1_555 A DA 6 1_555 D DT 23 1_555 1.123 0.359 3.295 -9.485 2.029 32.236 0.301 -3.435 2.875 3.556 16.618 33.627 5 AA_DT105DA106:DT123DA124_DD A 105 ? D 124 ? A 106 ? D 123 ? 1 A DA 6 1_555 D DT 23 1_555 A DG 7 1_555 D DC 22 1_555 0.543 -0.669 3.376 0.307 -1.516 33.535 -0.901 -0.888 3.407 -2.627 -0.531 33.570 6 AA_DA106DG107:DC122DT123_DD A 106 ? D 123 ? A 107 ? D 122 ? 1 A DG 7 1_555 D DC 22 1_555 A DC 8 1_555 D DG 21 1_555 -0.755 -1.138 3.105 -0.465 0.111 37.835 -1.768 1.108 3.110 0.171 0.718 37.838 7 AA_DG107DC108:DG121DC122_DD A 107 ? D 122 ? A 108 ? D 121 ? 1 A DC 8 1_555 D DG 21 1_555 A DT 9 1_555 D DA 20 1_555 1.160 0.104 3.140 1.890 3.701 33.107 -0.415 -1.717 3.192 6.462 -3.301 33.360 8 AA_DC108DT109:DA120DG121_DD A 108 ? D 121 ? A 109 ? D 120 ? 1 A DT 9 1_555 D DA 20 1_555 A DC 10 1_555 D DG 19 1_555 -0.290 0.741 3.376 -3.254 -2.039 40.408 1.302 0.045 3.349 -2.944 4.698 40.583 9 AA_DT109DC110:DG119DA120_DD A 109 ? D 120 ? A 110 ? D 119 ? 1 A DC 10 1_555 D DG 19 1_555 A DG 11 1_555 D DC 18 1_555 0.303 0.779 3.184 -1.202 -0.063 31.684 1.437 -0.769 3.169 -0.115 2.200 31.706 10 AA_DC110DG111:DC118DG119_DD A 110 ? D 119 ? A 111 ? D 118 ? 1 A DG 11 1_555 D DC 18 1_555 A DT 12 1_555 D DA 17 1_555 -0.007 -0.301 3.485 -2.037 1.730 29.452 -0.980 -0.446 3.455 3.395 3.996 29.571 11 AA_DG111DT112:DA117DC118_DD A 111 ? D 118 ? A 112 ? D 117 ? 1 A DT 12 1_555 D DA 17 1_555 A DG 13 1_555 D DC 16 1_555 2.358 -0.407 2.808 2.783 2.307 26.080 -1.445 -4.513 2.992 5.082 -6.130 26.325 12 AA_DT112DG113:DC116DA117_DD A 112 ? D 117 ? A 113 ? D 116 ? 1 A DG 13 1_555 D DC 16 1_555 A DG 14 1_555 D DC 15 1_555 -1.204 0.752 3.345 -4.217 4.280 31.808 0.546 1.371 3.539 7.723 7.609 32.356 13 AA_DG113DG114:DC115DC116_DD A 113 ? D 116 ? A 114 ? D 115 ? 1 A DG 14 1_555 D DC 15 1_555 A DA 15 1_555 B DT 8 1_555 -1.192 -0.352 3.368 -11.010 4.649 38.031 -1.096 0.378 3.502 6.928 16.408 39.799 14 AA_DG114DA115:DT108DC115_BD A 114 ? D 115 ? A 115 ? B 108 ? 1 A DA 15 1_555 B DT 8 1_555 A DC 16 1_555 B DG 7 1_555 0.255 -1.052 3.169 -3.068 3.889 36.817 -2.145 -0.790 3.016 6.123 4.831 37.137 15 AA_DA115DC116:DG107DT108_BB A 115 ? B 108 ? A 116 ? B 107 ? 1 A DC 16 1_555 B DG 7 1_555 A DT 17 1_555 B DA 6 1_555 0.111 -0.223 2.824 7.710 -2.094 29.566 -0.062 1.118 2.773 -4.012 -14.770 30.603 16 AA_DC116DT117:DA106DG107_BB A 116 ? B 107 ? A 117 ? B 106 ? 1 A DT 17 1_555 B DA 6 1_555 A DG 18 1_555 B DC 5 1_555 -0.232 2.136 3.529 4.510 1.973 33.613 3.311 1.186 3.585 3.389 -7.746 33.962 17 AA_DT117DG118:DC105DA106_BB A 117 ? B 106 ? A 118 ? B 105 ? 1 A DG 18 1_555 B DC 5 1_555 A DA 19 1_555 B DT 4 1_555 0.901 0.169 3.645 -0.381 -3.647 44.433 0.594 -1.226 3.613 -4.813 0.502 44.576 18 AA_DG118DA119:DT104DC105_BB A 118 ? B 105 ? A 119 ? B 104 ? 1 A DA 19 1_555 B DT 4 1_555 A DT 20 1_555 B DA 3 1_555 -1.198 -0.942 3.471 -2.745 -1.275 37.772 -1.274 1.465 3.575 -1.965 4.231 37.889 19 AA_DA119DT120:DA103DT104_BB A 119 ? B 104 ? A 120 ? B 103 ? 1 C DA 3 1_555 B DT 14 1_555 C DC 4 1_555 B DG 13 1_555 -0.253 -1.634 3.171 1.702 -2.570 39.859 -2.100 0.562 3.252 -3.763 -2.492 39.973 20 CC_DA103DC104:DG113DT114_BB C 103 ? B 114 ? C 104 ? B 113 ? 1 C DC 4 1_555 B DG 13 1_555 C DT 5 1_555 B DA 12 1_555 -0.689 -1.113 3.054 3.527 1.570 32.213 -2.244 1.799 2.909 2.816 -6.328 32.438 21 CC_DC104DT105:DA112DG113_BB C 104 ? B 113 ? C 105 ? B 112 ? 1 C DT 5 1_555 B DA 12 1_555 C DG 6 1_555 B DC 11 1_555 1.788 -0.089 3.518 9.998 -3.497 29.456 0.608 -1.106 3.888 -6.613 -18.910 31.263 22 CC_DT105DG106:DC111DA112_BB C 105 ? B 112 ? C 106 ? B 111 ? 1 C DG 6 1_555 B DC 11 1_555 C DC 7 1_555 B DG 10 1_555 0.443 -0.366 3.284 0.950 -3.954 31.262 0.073 -0.636 3.316 -7.299 -1.754 31.519 23 CC_DG106DC107:DG110DC111_BB C 106 ? B 111 ? C 107 ? B 110 ? 1 C DC 7 1_555 B DG 10 1_555 C DC 8 1_555 B DG 9 1_555 -0.248 -0.616 3.176 -3.294 2.715 38.482 -1.252 -0.016 3.137 4.104 4.979 38.709 24 CC_DC107DC108:DG109DG110_BB C 107 ? B 110 ? C 108 ? B 109 ? 1 C DC 8 1_555 B DG 9 1_555 C DT 9 1_555 D DA 14 1_555 -1.635 -0.084 2.900 -0.443 10.212 6.970 -11.466 7.111 1.626 55.743 2.419 12.366 25 CC_DC108DT109:DA114DG109_DB C 108 ? B 109 ? C 109 ? D 114 ? 1 C DT 9 1_555 D DA 14 1_555 C DG 10 1_555 D DC 13 1_555 1.057 -0.086 3.025 3.812 0.992 46.520 -0.187 -1.035 3.095 1.253 -4.816 46.678 26 CC_DT109DG110:DC113DA114_DD C 109 ? D 114 ? C 110 ? D 113 ? 1 C DG 10 1_555 D DC 13 1_555 C DA 11 1_555 D DT 12 1_555 -2.256 1.164 2.810 -5.149 -0.991 27.059 2.667 3.583 3.134 -2.094 10.874 27.553 27 CC_DG110DA111:DT112DC113_DD C 110 ? D 113 ? C 111 ? D 112 ? 1 C DA 11 1_555 D DT 12 1_555 C DA 12 1_555 D DT 11 1_555 0.601 -0.828 3.097 -4.861 4.212 42.820 -1.504 -1.254 2.924 5.731 6.613 43.278 28 CC_DA111DA112:DT111DT112_DD C 111 ? D 112 ? C 112 ? D 111 ? 1 C DA 12 1_555 D DT 11 1_555 C DT 13 1_555 D DA 10 1_555 0.466 -1.469 3.189 0.450 0.739 32.007 -2.793 -0.766 3.161 1.340 -0.815 32.018 29 CC_DA112DT113:DA110DT111_DD C 112 ? D 111 ? C 113 ? D 110 ? 1 C DT 13 1_555 D DA 10 1_555 C DT 14 1_555 D DA 9 1_555 -0.032 -1.355 3.250 -1.696 -4.374 38.986 -1.488 -0.158 3.375 -6.525 2.530 39.256 30 CC_DT113DT114:DA109DA110_DD C 113 ? D 110 ? C 114 ? D 109 ? 1 C DT 14 1_555 D DA 9 1_555 C DA 15 1_555 D DT 8 1_555 0.244 -0.185 3.169 -1.374 -2.823 33.544 0.127 -0.637 3.162 -4.878 2.374 33.687 31 CC_DT114DA115:DT108DA109_DD C 114 ? D 109 ? C 115 ? D 108 ? 1 C DA 15 1_555 D DT 8 1_555 C DC 16 1_555 D DG 7 1_555 0.100 -0.940 3.120 -0.502 0.317 41.889 -1.347 -0.190 3.112 0.443 0.702 41.893 32 CC_DA115DC116:DG107DT108_DD C 115 ? D 108 ? C 116 ? D 107 ? 1 C DC 16 1_555 D DG 7 1_555 C DT 17 1_555 D DA 6 1_555 -0.684 -0.983 3.298 1.358 -0.260 31.696 -1.751 1.502 3.275 -0.475 -2.485 31.725 33 CC_DC116DT117:DA106DG107_DD C 116 ? D 107 ? C 117 ? D 106 ? 1 C DT 17 1_555 D DA 6 1_555 C DG 18 1_555 D DC 5 1_555 1.007 1.228 3.376 0.289 -0.775 27.849 2.741 -2.020 3.351 -1.610 -0.601 27.861 34 CC_DT117DG118:DC105DA106_DD C 117 ? D 106 ? C 118 ? D 105 ? 1 C DG 18 1_555 D DC 5 1_555 C DA 19 1_555 D DT 4 1_555 -0.625 0.529 3.378 -8.580 0.245 41.821 0.701 -0.050 3.438 0.339 11.870 42.654 35 CC_DG118DA119:DT104DC105_DD C 118 ? D 105 ? C 119 ? D 104 ? 1 C DA 19 1_555 D DT 4 1_555 C DC 20 1_555 D DG 3 1_555 0.105 -1.016 3.448 -2.971 0.268 40.409 -1.498 -0.500 3.426 0.388 4.295 40.514 36 CC_DA119DC120:DG103DT104_DD C 119 ? D 104 ? C 120 ? D 103 ? 1 C DC 20 1_555 D DG 3 1_555 C DC 21 1_555 D DG 2 1_555 -1.027 -1.113 3.201 -0.790 2.487 37.376 -2.049 1.499 3.143 3.875 1.231 37.463 37 CC_DC120DC121:DG102DG103_DD C 120 ? D 103 ? C 121 ? D 102 ? 1 C DC 21 1_555 D DG 2 1_555 C DG 22 1_555 D DC 1 1_555 -0.300 -0.976 3.140 -3.476 2.639 28.341 -2.538 -0.142 3.052 5.349 7.047 28.669 38 CC_DC121DG122:DC101DG102_DD C 121 ? D 102 ? C 122 ? D 101 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Office of Naval Research (ONR)' 'United States' N000141912596 1 'Department of Energy (DOE, United States)' 'United States' DE-SC0007991 2 'National Science Foundation (NSF, United States)' 'United States' 2106790 3 'Human Frontier Science Program (HFSP)' France RPG0010/2017 4 'National Science Foundation (NSF, United States)' 'United States' DMR-1420073 5 'National Aeronautics and Space Administration (NASA, United States)' 'United States' '2020 NASA Center Innovation Fund' 6 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5W6W _pdbx_initial_refinement_model.details 'tensegrity triangle' # _space_group.name_H-M_alt 'H 3' _space_group.name_Hall 'H 3' _space_group.IT_number 146 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8SJW _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.004393 _atom_sites.fract_transf_matrix[1][2] 0.002536 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005073 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010939 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_