data_8VAX # _entry.id 8VAX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VAX pdb_00008vax 10.2210/pdb8vax/pdb WWPDB D_1000279809 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-04-17 2 'Structure model' 1 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _database_PDB_caveat.id 1 _database_PDB_caveat.text ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VAX _pdbx_database_status.recvd_initial_deposition_date 2023-12-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email fang2@uchicago.edu _pdbx_contact_author.name_first Ziyuan _pdbx_contact_author.name_last Fang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8679-6633 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Szostak, J.W.' 2 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 146 _citation.language ? _citation.page_first 10632 _citation.page_last 10639 _citation.title 'Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.4c00323 _citation.pdbx_database_id_PubMed 38579124 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fang, Z.' 1 ? primary 'Pazienza, L.T.' 2 ? primary 'Zhang, J.' 3 ? primary 'Tam, C.P.' 4 ? primary 'Szostak, J.W.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Cadmium catalyzed nonenzymatic RNA primer extension product' 4874.075 2 ? ? ? ? 2 non-polymer nat 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 non-polymer syn "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 347.221 2 ? ? ? ? 4 water nat water 18.015 183 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)(LCG)ACUUAAGUCG(G46)' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCGG _entity_poly.pdbx_strand_id AAA,BBB _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" DGP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n 1 15 G46 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DGP non-polymer n "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 G46 'RNA linking' n "GUANOSINE-5'-MONOTHIOPHOSPHATE" "5'-O-thiophosphonoguanosine" 'C10 H14 N5 O7 P S' 379.286 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC AAA . n A 1 2 LCC 2 2 2 LCC LCC AAA . n A 1 3 LCC 3 3 3 LCC LCC AAA . n A 1 4 LCG 4 4 4 LCG LCG AAA . n A 1 5 A 5 5 5 A A AAA . n A 1 6 C 6 6 6 C C AAA . n A 1 7 U 7 7 7 U U AAA . n A 1 8 U 8 8 8 U U AAA . n A 1 9 A 9 9 9 A A AAA . n A 1 10 A 10 10 10 A A AAA . n A 1 11 G 11 11 11 G G AAA . n A 1 12 U 12 12 12 U U AAA . n A 1 13 C 13 13 13 C C AAA . n A 1 14 G 14 14 14 G G AAA . n A 1 15 G46 15 15 15 G46 2SG AAA . n B 1 1 LCC 1 1 1 LCC LCC BBB . n B 1 2 LCC 2 2 2 LCC LCC BBB . n B 1 3 LCC 3 3 3 LCC LCC BBB . n B 1 4 LCG 4 4 4 LCG LCG BBB . n B 1 5 A 5 5 5 A A BBB . n B 1 6 C 6 6 6 C C BBB . n B 1 7 U 7 7 7 U U BBB . n B 1 8 U 8 8 8 U U BBB . n B 1 9 A 9 9 9 A A BBB . n B 1 10 A 10 10 10 A A BBB . n B 1 11 G 11 11 11 G G BBB . n B 1 12 U 12 12 12 U U BBB . n B 1 13 C 13 13 13 C C BBB . n B 1 14 G 14 14 14 G G BBB . n B 1 15 G46 15 15 15 G46 2SG BBB . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG AAA . D 2 MG 1 102 3 MG MG AAA . E 3 DGP 1 101 101 DGP DGP BBB . F 3 DGP 1 102 101 DGP DGP BBB . G 2 MG 1 103 2 MG MG BBB . H 2 MG 1 104 5 MG MG BBB . I 2 MG 1 105 6 MG MG BBB . J 4 HOH 1 201 165 HOH HOH AAA . J 4 HOH 2 202 172 HOH HOH AAA . J 4 HOH 3 203 186 HOH HOH AAA . J 4 HOH 4 204 98 HOH HOH AAA . J 4 HOH 5 205 166 HOH HOH AAA . J 4 HOH 6 206 149 HOH HOH AAA . J 4 HOH 7 207 5 HOH HOH AAA . J 4 HOH 8 208 131 HOH HOH AAA . J 4 HOH 9 209 126 HOH HOH AAA . J 4 HOH 10 210 171 HOH HOH AAA . J 4 HOH 11 211 173 HOH HOH AAA . J 4 HOH 12 212 24 HOH HOH AAA . J 4 HOH 13 213 100 HOH HOH AAA . J 4 HOH 14 214 91 HOH HOH AAA . J 4 HOH 15 215 33 HOH HOH AAA . J 4 HOH 16 216 23 HOH HOH AAA . J 4 HOH 17 217 113 HOH HOH AAA . J 4 HOH 18 218 70 HOH HOH AAA . J 4 HOH 19 219 124 HOH HOH AAA . J 4 HOH 20 220 18 HOH HOH AAA . J 4 HOH 21 221 41 HOH HOH AAA . J 4 HOH 22 222 180 HOH HOH AAA . J 4 HOH 23 223 135 HOH HOH AAA . J 4 HOH 24 224 86 HOH HOH AAA . J 4 HOH 25 225 152 HOH HOH AAA . J 4 HOH 26 226 46 HOH HOH AAA . J 4 HOH 27 227 157 HOH HOH AAA . J 4 HOH 28 228 122 HOH HOH AAA . J 4 HOH 29 229 179 HOH HOH AAA . J 4 HOH 30 230 83 HOH HOH AAA . J 4 HOH 31 231 161 HOH HOH AAA . J 4 HOH 32 232 73 HOH HOH AAA . J 4 HOH 33 233 148 HOH HOH AAA . J 4 HOH 34 234 114 HOH HOH AAA . J 4 HOH 35 235 35 HOH HOH AAA . J 4 HOH 36 236 102 HOH HOH AAA . J 4 HOH 37 237 57 HOH HOH AAA . J 4 HOH 38 238 115 HOH HOH AAA . J 4 HOH 39 239 93 HOH HOH AAA . J 4 HOH 40 240 169 HOH HOH AAA . J 4 HOH 41 241 67 HOH HOH AAA . J 4 HOH 42 242 9 HOH HOH AAA . J 4 HOH 43 243 143 HOH HOH AAA . J 4 HOH 44 244 44 HOH HOH AAA . J 4 HOH 45 245 19 HOH HOH AAA . J 4 HOH 46 246 92 HOH HOH AAA . J 4 HOH 47 247 2 HOH HOH AAA . J 4 HOH 48 248 36 HOH HOH AAA . J 4 HOH 49 249 47 HOH HOH AAA . J 4 HOH 50 250 42 HOH HOH AAA . J 4 HOH 51 251 72 HOH HOH AAA . J 4 HOH 52 252 136 HOH HOH AAA . J 4 HOH 53 253 74 HOH HOH AAA . J 4 HOH 54 254 68 HOH HOH AAA . J 4 HOH 55 255 163 HOH HOH AAA . J 4 HOH 56 256 130 HOH HOH AAA . J 4 HOH 57 257 69 HOH HOH AAA . J 4 HOH 58 258 10 HOH HOH AAA . J 4 HOH 59 259 62 HOH HOH AAA . J 4 HOH 60 260 38 HOH HOH AAA . J 4 HOH 61 261 25 HOH HOH AAA . J 4 HOH 62 262 181 HOH HOH AAA . J 4 HOH 63 263 43 HOH HOH AAA . J 4 HOH 64 264 71 HOH HOH AAA . J 4 HOH 65 265 1 HOH HOH AAA . J 4 HOH 66 266 127 HOH HOH AAA . J 4 HOH 67 267 101 HOH HOH AAA . J 4 HOH 68 268 154 HOH HOH AAA . J 4 HOH 69 269 37 HOH HOH AAA . J 4 HOH 70 270 129 HOH HOH AAA . J 4 HOH 71 271 182 HOH HOH AAA . J 4 HOH 72 272 45 HOH HOH AAA . J 4 HOH 73 273 58 HOH HOH AAA . J 4 HOH 74 274 185 HOH HOH AAA . J 4 HOH 75 275 12 HOH HOH AAA . J 4 HOH 76 276 155 HOH HOH AAA . J 4 HOH 77 277 118 HOH HOH AAA . J 4 HOH 78 278 66 HOH HOH AAA . J 4 HOH 79 279 187 HOH HOH AAA . J 4 HOH 80 280 176 HOH HOH AAA . J 4 HOH 81 281 84 HOH HOH AAA . J 4 HOH 82 282 151 HOH HOH AAA . J 4 HOH 83 283 162 HOH HOH AAA . J 4 HOH 84 284 141 HOH HOH AAA . J 4 HOH 85 285 120 HOH HOH AAA . J 4 HOH 86 286 144 HOH HOH AAA . J 4 HOH 87 287 34 HOH HOH AAA . J 4 HOH 88 288 132 HOH HOH AAA . J 4 HOH 89 289 90 HOH HOH AAA . J 4 HOH 90 290 123 HOH HOH AAA . K 4 HOH 1 201 119 HOH HOH BBB . K 4 HOH 2 202 146 HOH HOH BBB . K 4 HOH 3 203 105 HOH HOH BBB . K 4 HOH 4 204 112 HOH HOH BBB . K 4 HOH 5 205 106 HOH HOH BBB . K 4 HOH 6 206 138 HOH HOH BBB . K 4 HOH 7 207 140 HOH HOH BBB . K 4 HOH 8 208 89 HOH HOH BBB . K 4 HOH 9 209 7 HOH HOH BBB . K 4 HOH 10 210 156 HOH HOH BBB . K 4 HOH 11 211 60 HOH HOH BBB . K 4 HOH 12 212 40 HOH HOH BBB . K 4 HOH 13 213 170 HOH HOH BBB . K 4 HOH 14 214 94 HOH HOH BBB . K 4 HOH 15 215 121 HOH HOH BBB . K 4 HOH 16 216 160 HOH HOH BBB . K 4 HOH 17 217 139 HOH HOH BBB . K 4 HOH 18 218 116 HOH HOH BBB . K 4 HOH 19 219 111 HOH HOH BBB . K 4 HOH 20 220 97 HOH HOH BBB . K 4 HOH 21 221 184 HOH HOH BBB . K 4 HOH 22 222 13 HOH HOH BBB . K 4 HOH 23 223 137 HOH HOH BBB . K 4 HOH 24 224 48 HOH HOH BBB . K 4 HOH 25 225 76 HOH HOH BBB . K 4 HOH 26 226 109 HOH HOH BBB . K 4 HOH 27 227 87 HOH HOH BBB . K 4 HOH 28 228 159 HOH HOH BBB . K 4 HOH 29 229 103 HOH HOH BBB . K 4 HOH 30 230 49 HOH HOH BBB . K 4 HOH 31 231 56 HOH HOH BBB . K 4 HOH 32 232 29 HOH HOH BBB . K 4 HOH 33 233 21 HOH HOH BBB . K 4 HOH 34 234 75 HOH HOH BBB . K 4 HOH 35 235 54 HOH HOH BBB . K 4 HOH 36 236 81 HOH HOH BBB . K 4 HOH 37 237 147 HOH HOH BBB . K 4 HOH 38 238 59 HOH HOH BBB . K 4 HOH 39 239 167 HOH HOH BBB . K 4 HOH 40 240 51 HOH HOH BBB . K 4 HOH 41 241 78 HOH HOH BBB . K 4 HOH 42 242 158 HOH HOH BBB . K 4 HOH 43 243 142 HOH HOH BBB . K 4 HOH 44 244 61 HOH HOH BBB . K 4 HOH 45 245 26 HOH HOH BBB . K 4 HOH 46 246 28 HOH HOH BBB . K 4 HOH 47 247 22 HOH HOH BBB . K 4 HOH 48 248 32 HOH HOH BBB . K 4 HOH 49 249 53 HOH HOH BBB . K 4 HOH 50 250 145 HOH HOH BBB . K 4 HOH 51 251 128 HOH HOH BBB . K 4 HOH 52 252 88 HOH HOH BBB . K 4 HOH 53 253 11 HOH HOH BBB . K 4 HOH 54 254 15 HOH HOH BBB . K 4 HOH 55 255 55 HOH HOH BBB . K 4 HOH 56 256 8 HOH HOH BBB . K 4 HOH 57 257 104 HOH HOH BBB . K 4 HOH 58 258 79 HOH HOH BBB . K 4 HOH 59 259 96 HOH HOH BBB . K 4 HOH 60 260 107 HOH HOH BBB . K 4 HOH 61 261 14 HOH HOH BBB . K 4 HOH 62 262 4 HOH HOH BBB . K 4 HOH 63 263 27 HOH HOH BBB . K 4 HOH 64 264 125 HOH HOH BBB . K 4 HOH 65 265 52 HOH HOH BBB . K 4 HOH 66 266 117 HOH HOH BBB . K 4 HOH 67 267 77 HOH HOH BBB . K 4 HOH 68 268 30 HOH HOH BBB . K 4 HOH 69 269 3 HOH HOH BBB . K 4 HOH 70 270 65 HOH HOH BBB . K 4 HOH 71 271 134 HOH HOH BBB . K 4 HOH 72 272 85 HOH HOH BBB . K 4 HOH 73 273 133 HOH HOH BBB . K 4 HOH 74 274 50 HOH HOH BBB . K 4 HOH 75 275 168 HOH HOH BBB . K 4 HOH 76 276 39 HOH HOH BBB . K 4 HOH 77 277 31 HOH HOH BBB . K 4 HOH 78 278 99 HOH HOH BBB . K 4 HOH 79 279 150 HOH HOH BBB . K 4 HOH 80 280 17 HOH HOH BBB . K 4 HOH 81 281 164 HOH HOH BBB . K 4 HOH 82 282 108 HOH HOH BBB . K 4 HOH 83 283 95 HOH HOH BBB . K 4 HOH 84 284 174 HOH HOH BBB . K 4 HOH 85 285 16 HOH HOH BBB . K 4 HOH 86 286 6 HOH HOH BBB . K 4 HOH 87 287 177 HOH HOH BBB . K 4 HOH 88 288 175 HOH HOH BBB . K 4 HOH 89 289 64 HOH HOH BBB . K 4 HOH 90 290 80 HOH HOH BBB . K 4 HOH 91 291 63 HOH HOH BBB . K 4 HOH 92 292 183 HOH HOH BBB . K 4 HOH 93 293 178 HOH HOH BBB . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0419 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8VAX _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.471 _cell.length_a_esd ? _cell.length_b 43.471 _cell.length_b_esd ? _cell.length_c 83.887 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VAX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '35% w/v 1,6-Hexanediol, 50 mM TRIS pH 8.5 75 mM Magnesium sulfate.' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-03-01 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03579 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 2.0.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.03579 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 2.0.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8VAX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.417 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16509 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.953 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.101 _reflns.pdbx_Rpim_I_all 0.035 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star 0.998 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.42 _reflns_shell.d_res_low 1.44 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 502 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.4 _reflns_shell.pdbx_chi_squared 0.661 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.350 _reflns_shell.pdbx_Rpim_I_all 0.198 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.834 _reflns_shell.pdbx_CC_star 0.954 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 56.4 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.286 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.001 _refine.aniso_B[1][2] -0.001 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] -0.001 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] 0.004 _refine.B_iso_max ? _refine.B_iso_mean 12.690 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8VAX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.417 _refine.ls_d_res_low 41.944 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16343 _refine.ls_number_reflns_R_free 841 _refine.ls_number_reflns_R_work 15502 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.188 _refine.ls_percent_reflns_R_free 5.146 _refine.ls_R_factor_all 0.177 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2180 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1749 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.252 _refine.ls_wR_factor_R_work 0.207 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.071 _refine.pdbx_overall_ESU_R_Free 0.077 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.006 _refine.overall_SU_ML 0.041 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work 0.9793 _refine.pdbx_average_fsc_free 0.9699 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.417 _refine_hist.d_res_low 41.944 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 878 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 644 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.019 0.017 774 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.029 0.023 348 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.868 2.296 1178 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.763 2.467 822 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.057 5.000 14 ? r_dihedral_angle_other_2_deg ? ? 'X-RAY DIFFRACTION' ? 0.135 0.200 152 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 1.786 0.200 24 ? r_chiral_restr_other ? ? 'X-RAY DIFFRACTION' ? 0.022 0.021 400 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.023 128 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.084 0.200 71 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.192 0.200 443 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.251 0.200 307 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.264 0.200 207 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.333 0.200 183 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.036 0.200 4 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.103 0.200 13 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.182 0.200 61 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.211 0.200 31 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.586 1.525 774 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.317 1.481 770 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 4.189 2.760 1178 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.017 2.691 1173 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.689 18.728 1215 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 5.488 17.630 1118 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.417 1.454 1347 . 36 617 48.4781 . 0.196 . . 0.196 . . . . . 0.186 . 20 . 0.973 0.980 0.190 'X-RAY DIFFRACTION' 1.454 1.494 1268 . 36 795 65.5363 . 0.210 . . 0.210 . . . . . 0.201 . 20 . 0.970 0.969 0.215 'X-RAY DIFFRACTION' 1.494 1.537 1227 . 38 877 74.5721 . 0.194 . . 0.193 . . . . . 0.185 . 20 . 0.975 0.972 0.206 'X-RAY DIFFRACTION' 1.537 1.584 1212 . 45 970 83.7459 . 0.203 . . 0.201 . . . . . 0.197 . 20 . 0.974 0.962 0.252 'X-RAY DIFFRACTION' 1.584 1.636 1176 . 58 1030 92.5170 . 0.186 . . 0.183 . . . . . 0.182 . 20 . 0.978 0.967 0.231 'X-RAY DIFFRACTION' 1.636 1.694 1127 . 50 1067 99.1127 . 0.165 . . 0.163 . . . . . 0.166 . 20 . 0.983 0.974 0.205 'X-RAY DIFFRACTION' 1.694 1.757 1110 . 50 1052 99.2793 . 0.160 . . 0.157 . . . . . 0.166 . 20 . 0.984 0.968 0.235 'X-RAY DIFFRACTION' 1.757 1.829 1059 . 48 1009 99.8111 . 0.163 . . 0.162 . . . . . 0.172 . 20 . 0.983 0.982 0.171 'X-RAY DIFFRACTION' 1.829 1.910 1016 . 76 937 99.7047 . 0.173 . . 0.169 . . . . . 0.183 . 20 . 0.981 0.966 0.220 'X-RAY DIFFRACTION' 1.910 2.003 980 . 40 938 99.7959 . 0.176 . . 0.175 . . . . . 0.191 . 20 . 0.980 0.973 0.190 'X-RAY DIFFRACTION' 2.003 2.111 919 . 41 876 99.7824 . 0.180 . . 0.179 . . . . . 0.209 . 20 . 0.981 0.976 0.202 'X-RAY DIFFRACTION' 2.111 2.239 896 . 52 844 100.0000 . 0.171 . . 0.169 . . . . . 0.196 . 20 . 0.981 0.977 0.192 'X-RAY DIFFRACTION' 2.239 2.393 840 . 50 788 99.7619 . 0.183 . . 0.180 . . . . . 0.215 . 20 . 0.980 0.961 0.234 'X-RAY DIFFRACTION' 2.393 2.584 785 . 30 755 100.0000 . 0.184 . . 0.181 . . . . . 0.226 . 20 . 0.980 0.975 0.252 'X-RAY DIFFRACTION' 2.584 2.830 717 . 43 672 99.7211 . 0.197 . . 0.194 . . . . . 0.237 . 20 . 0.976 0.965 0.254 'X-RAY DIFFRACTION' 2.830 3.162 670 . 45 618 98.9552 . 0.196 . . 0.189 . . . . . 0.239 . 20 . 0.979 0.954 0.308 'X-RAY DIFFRACTION' 3.162 3.648 592 . 39 548 99.1554 . 0.175 . . 0.171 . . . . . 0.231 . 20 . 0.984 0.958 0.258 'X-RAY DIFFRACTION' 3.648 4.459 504 . 29 472 99.4048 . 0.133 . . 0.133 . . . . . 0.194 . 20 . 0.989 0.990 0.131 'X-RAY DIFFRACTION' 4.459 6.271 416 . 21 395 100.0000 . 0.156 . . 0.154 . . . . . 0.242 . 20 . 0.987 0.976 0.203 'X-RAY DIFFRACTION' 6.271 41.944 259 . 14 242 98.8417 . 0.241 . . 0.243 . . . . . 0.442 . 20 . 0.951 0.969 0.195 # _struct.entry_id 8VAX _struct.title 'Cadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VAX _struct_keywords.text 'Phosphorothioate, Cadmium, thiophilic metal ion, nonenzymatic primer extension, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 4 ? K N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8VAX _struct_ref.pdbx_db_accession 8VAX _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8VAX AAA 1 ? 15 ? 8VAX 1 ? 15 ? 1 15 2 1 8VAX BBB 1 ? 15 ? 8VAX 1 ? 15 ? 1 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? AAA LCC 1 AAA LCC 2 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? AAA LCC 2 AAA LCC 3 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? AAA LCC 3 AAA LCG 4 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? AAA LCG 4 AAA A 5 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale5 covale both ? A G 14 "O3'" ? ? ? 1_555 A G46 15 P ? ? AAA G 14 AAA G46 15 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale6 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? BBB LCC 1 BBB LCC 2 1_555 ? ? ? ? ? ? ? 1.666 ? ? covale7 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? BBB LCC 2 BBB LCC 3 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale8 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? BBB LCC 3 BBB LCG 4 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale9 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? BBB LCG 4 BBB A 5 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale10 covale both ? B G 14 "O3'" ? ? ? 1_555 B G46 15 P ? ? BBB G 14 BBB G46 15 1_555 ? ? ? ? ? ? ? 1.633 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 101 AAA HOH 207 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 101 AAA HOH 247 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 101 AAA HOH 265 1_555 ? ? ? ? ? ? ? 1.971 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? AAA MG 101 BBB HOH 262 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? AAA MG 101 BBB HOH 269 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? AAA MG 101 BBB HOH 286 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 102 AAA HOH 215 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 102 AAA HOH 235 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 102 AAA HOH 248 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 102 AAA HOH 287 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? AAA MG 102 AAA HOH 289 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? AAA MG 102 BBB HOH 208 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc13 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? AAA HOH 242 BBB MG 103 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc14 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? AAA HOH 258 BBB MG 103 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc15 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? AAA HOH 275 BBB MG 103 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc16 metalc ? ? B G 11 OP1 ? ? ? 1_555 I MG . MG ? ? BBB G 11 BBB MG 105 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc17 metalc ? ? B G 11 OP1 ? ? ? 1_555 I MG . MG ? ? BBB G 11 BBB MG 105 2_555 ? ? ? ? ? ? ? 2.348 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 103 BBB HOH 222 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 103 BBB HOH 253 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc20 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 103 BBB HOH 256 2_545 ? ? ? ? ? ? ? 2.094 ? ? metalc21 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 104 BBB HOH 236 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc22 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 104 BBB HOH 241 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc23 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 104 BBB HOH 258 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc24 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 104 BBB HOH 290 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc25 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 105 BBB HOH 273 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc26 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? BBB MG 105 BBB HOH 273 3_555 ? ? ? ? ? ? ? 2.239 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? AAA LCG 4 BBB C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? AAA LCG 4 BBB C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? AAA LCG 4 BBB C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? AAA A 5 BBB U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? AAA A 5 BBB U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? AAA C 6 BBB G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? AAA C 6 BBB G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? AAA C 6 BBB G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? AAA U 7 BBB A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? AAA U 7 BBB A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? AAA U 8 BBB A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? AAA U 8 BBB A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? AAA A 9 BBB U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? AAA A 9 BBB U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? AAA A 10 BBB U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? AAA A 10 BBB U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? AAA G 11 BBB C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? AAA G 11 BBB C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? AAA G 11 BBB C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? AAA U 12 BBB A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? AAA U 12 BBB A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? AAA C 13 BBB LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? AAA C 13 BBB LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? AAA C 13 BBB LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? J HOH . ? AAA HOH 207 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? J HOH . ? AAA HOH 247 ? 1_555 93.2 ? 2 O ? J HOH . ? AAA HOH 207 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? J HOH . ? AAA HOH 265 ? 1_555 98.2 ? 3 O ? J HOH . ? AAA HOH 247 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? J HOH . ? AAA HOH 265 ? 1_555 89.1 ? 4 O ? J HOH . ? AAA HOH 207 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 262 ? 1_555 84.1 ? 5 O ? J HOH . ? AAA HOH 247 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 262 ? 1_555 176.9 ? 6 O ? J HOH . ? AAA HOH 265 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 262 ? 1_555 89.7 ? 7 O ? J HOH . ? AAA HOH 207 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 269 ? 1_555 84.5 ? 8 O ? J HOH . ? AAA HOH 247 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 269 ? 1_555 89.2 ? 9 O ? J HOH . ? AAA HOH 265 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 269 ? 1_555 176.9 ? 10 O ? K HOH . ? BBB HOH 262 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 269 ? 1_555 92.1 ? 11 O ? J HOH . ? AAA HOH 207 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 286 ? 1_555 169.8 ? 12 O ? J HOH . ? AAA HOH 247 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 286 ? 1_555 92.8 ? 13 O ? J HOH . ? AAA HOH 265 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 286 ? 1_555 90.2 ? 14 O ? K HOH . ? BBB HOH 262 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 286 ? 1_555 90.1 ? 15 O ? K HOH . ? BBB HOH 269 ? 1_555 MG ? C MG . ? AAA MG 101 ? 1_555 O ? K HOH . ? BBB HOH 286 ? 1_555 87.3 ? 16 O ? J HOH . ? AAA HOH 215 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 235 ? 1_555 89.7 ? 17 O ? J HOH . ? AAA HOH 215 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 248 ? 1_555 90.3 ? 18 O ? J HOH . ? AAA HOH 235 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 248 ? 1_555 94.4 ? 19 O ? J HOH . ? AAA HOH 215 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 287 ? 1_555 93.2 ? 20 O ? J HOH . ? AAA HOH 235 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 287 ? 1_555 82.0 ? 21 O ? J HOH . ? AAA HOH 248 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 287 ? 1_555 174.9 ? 22 O ? J HOH . ? AAA HOH 215 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 289 ? 1_555 177.7 ? 23 O ? J HOH . ? AAA HOH 235 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 289 ? 1_555 88.3 ? 24 O ? J HOH . ? AAA HOH 248 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 289 ? 1_555 88.7 ? 25 O ? J HOH . ? AAA HOH 287 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? J HOH . ? AAA HOH 289 ? 1_555 87.7 ? 26 O ? J HOH . ? AAA HOH 215 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? K HOH . ? BBB HOH 208 ? 1_555 86.8 ? 27 O ? J HOH . ? AAA HOH 235 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? K HOH . ? BBB HOH 208 ? 1_555 176.6 ? 28 O ? J HOH . ? AAA HOH 248 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? K HOH . ? BBB HOH 208 ? 1_555 85.8 ? 29 O ? J HOH . ? AAA HOH 287 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? K HOH . ? BBB HOH 208 ? 1_555 98.0 ? 30 O ? J HOH . ? AAA HOH 289 ? 1_555 MG ? D MG . ? AAA MG 102 ? 1_555 O ? K HOH . ? BBB HOH 208 ? 1_555 95.1 ? 31 O ? J HOH . ? AAA HOH 242 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? J HOH . ? AAA HOH 258 ? 1_555 96.2 ? 32 O ? J HOH . ? AAA HOH 242 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? J HOH . ? AAA HOH 275 ? 1_555 88.7 ? 33 O ? J HOH . ? AAA HOH 258 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? J HOH . ? AAA HOH 275 ? 1_555 87.0 ? 34 O ? J HOH . ? AAA HOH 242 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 222 ? 1_555 87.4 ? 35 O ? J HOH . ? AAA HOH 258 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 222 ? 1_555 91.4 ? 36 O ? J HOH . ? AAA HOH 275 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 222 ? 1_555 175.6 ? 37 O ? J HOH . ? AAA HOH 242 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 253 ? 1_555 87.6 ? 38 O ? J HOH . ? AAA HOH 258 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 253 ? 1_555 175.0 ? 39 O ? J HOH . ? AAA HOH 275 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 253 ? 1_555 89.8 ? 40 O ? K HOH . ? BBB HOH 222 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 253 ? 1_555 92.1 ? 41 O ? J HOH . ? AAA HOH 242 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 256 ? 2_545 175.0 ? 42 O ? J HOH . ? AAA HOH 258 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 256 ? 2_545 88.8 ? 43 O ? J HOH . ? AAA HOH 275 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 256 ? 2_545 91.9 ? 44 O ? K HOH . ? BBB HOH 222 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 256 ? 2_545 92.2 ? 45 O ? K HOH . ? BBB HOH 253 ? 1_555 MG ? G MG . ? BBB MG 103 ? 1_555 O ? K HOH . ? BBB HOH 256 ? 2_545 87.4 ? 46 OP1 ? B G 11 ? BBB G 11 ? 1_555 MG ? I MG . ? BBB MG 105 ? 1_555 OP1 ? B G 11 ? BBB G 11 ? 1_555 0.0 ? 47 OP1 ? B G 11 ? BBB G 11 ? 1_555 MG ? I MG . ? BBB MG 105 ? 1_555 O ? K HOH . ? BBB HOH 273 ? 1_555 79.9 ? 48 OP1 ? B G 11 ? BBB G 11 ? 1_555 MG ? I MG . ? BBB MG 105 ? 1_555 O ? K HOH . ? BBB HOH 273 ? 1_555 79.9 ? 49 OP1 ? B G 11 ? BBB G 11 ? 1_555 MG ? I MG . ? BBB MG 105 ? 1_555 O ? K HOH . ? BBB HOH 273 ? 3_555 150.6 ? 50 OP1 ? B G 11 ? BBB G 11 ? 1_555 MG ? I MG . ? BBB MG 105 ? 1_555 O ? K HOH . ? BBB HOH 273 ? 3_555 150.6 ? 51 O ? K HOH . ? BBB HOH 273 ? 1_555 MG ? I MG . ? BBB MG 105 ? 1_555 O ? K HOH . ? BBB HOH 273 ? 3_555 76.6 ? 52 O ? K HOH . ? BBB HOH 236 ? 1_555 MG ? H MG . ? BBB MG 104 ? 1_555 O ? K HOH . ? BBB HOH 241 ? 1_555 82.5 ? 53 O ? K HOH . ? BBB HOH 236 ? 1_555 MG ? H MG . ? BBB MG 104 ? 1_555 O ? K HOH . ? BBB HOH 258 ? 1_555 85.9 ? 54 O ? K HOH . ? BBB HOH 241 ? 1_555 MG ? H MG . ? BBB MG 104 ? 1_555 O ? K HOH . ? BBB HOH 258 ? 1_555 86.7 ? 55 O ? K HOH . ? BBB HOH 236 ? 1_555 MG ? H MG . ? BBB MG 104 ? 1_555 O ? K HOH . ? BBB HOH 290 ? 1_555 75.2 ? 56 O ? K HOH . ? BBB HOH 241 ? 1_555 MG ? H MG . ? BBB MG 104 ? 1_555 O ? K HOH . ? BBB HOH 290 ? 1_555 76.6 ? 57 O ? K HOH . ? BBB HOH 258 ? 1_555 MG ? H MG . ? BBB MG 104 ? 1_555 O ? K HOH . ? BBB HOH 290 ? 1_555 156.1 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O BBB HOH 272 ? ? O BBB HOH 288 ? ? 1.81 2 1 O BBB HOH 289 ? ? O BBB HOH 291 ? ? 1.85 3 1 O AAA HOH 280 ? ? O AAA HOH 285 ? ? 1.88 4 1 O AAA HOH 216 ? ? O AAA HOH 268 ? ? 1.92 5 1 O BBB HOH 291 ? ? O BBB HOH 293 ? ? 2.00 6 1 O AAA HOH 273 ? ? O BBB HOH 287 ? ? 2.02 7 1 O AAA HOH 241 ? ? O AAA HOH 278 ? ? 2.02 8 1 O AAA HOH 284 ? ? O BBB HOH 287 ? ? 2.02 9 1 OP2 BBB C 6 ? ? O BBB HOH 201 ? ? 2.03 10 1 O AAA HOH 220 ? ? O AAA HOH 280 ? ? 2.04 11 1 O AAA HOH 225 ? ? O AAA HOH 284 ? ? 2.05 12 1 O AAA HOH 277 ? ? O BBB HOH 201 ? ? 2.05 13 1 O BBB HOH 249 ? ? O BBB HOH 291 ? ? 2.06 14 1 O BBB HOH 201 ? ? O BBB HOH 261 ? ? 2.06 15 1 O AAA HOH 278 ? ? O AAA HOH 282 ? ? 2.06 16 1 O AAA HOH 238 ? ? O BBB HOH 287 ? ? 2.07 17 1 O AAA HOH 271 ? ? O BBB HOH 201 ? ? 2.07 18 1 O BBB HOH 212 ? ? O BBB HOH 285 ? ? 2.09 19 1 O BBB HOH 238 ? ? O BBB HOH 287 ? ? 2.09 20 1 O BBB HOH 201 ? ? O BBB HOH 218 ? ? 2.12 21 1 O AAA HOH 244 ? ? O AAA HOH 278 ? ? 2.13 22 1 O AAA HOH 216 ? ? O AAA HOH 280 ? ? 2.14 23 1 O BBB HOH 211 ? ? O BBB HOH 287 ? ? 2.15 24 1 O BBB HOH 218 ? ? O BBB HOH 292 ? ? 2.16 25 1 O BBB HOH 230 ? ? O BBB HOH 291 ? ? 2.17 26 1 O BBB HOH 280 ? ? O BBB HOH 285 ? ? 2.18 27 1 O AAA HOH 280 ? ? O AAA HOH 290 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 AAA _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 206 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 AAA _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 209 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 AAA _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 10 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 AAA _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 10 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 AAA _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 10 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.67 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -6.03 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 BBB MG 105 ? I MG . 2 1 AAA HOH 217 ? J HOH . 3 1 AAA HOH 234 ? J HOH . 4 1 BBB HOH 205 ? K HOH . 5 1 BBB HOH 281 ? K HOH . 6 1 BBB HOH 282 ? K HOH . # _pdbx_entry_details.entry_id 8VAX _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DGP P P N N 73 DGP OP1 O N N 74 DGP OP2 O N N 75 DGP OP3 O N N 76 DGP "O5'" O N N 77 DGP "C5'" C N N 78 DGP "C4'" C N R 79 DGP "O4'" O N N 80 DGP "C3'" C N S 81 DGP "O3'" O N N 82 DGP "C2'" C N N 83 DGP "C1'" C N R 84 DGP N9 N Y N 85 DGP C8 C Y N 86 DGP N7 N Y N 87 DGP C5 C Y N 88 DGP C6 C N N 89 DGP O6 O N N 90 DGP N1 N N N 91 DGP C2 C N N 92 DGP N2 N N N 93 DGP N3 N N N 94 DGP C4 C Y N 95 DGP HOP2 H N N 96 DGP HOP3 H N N 97 DGP "H5'" H N N 98 DGP "H5''" H N N 99 DGP "H4'" H N N 100 DGP "H3'" H N N 101 DGP "HO3'" H N N 102 DGP "H2'" H N N 103 DGP "H2''" H N N 104 DGP "H1'" H N N 105 DGP H8 H N N 106 DGP HN1 H N N 107 DGP HN21 H N N 108 DGP HN22 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 G46 P P N N 148 G46 O1P O N N 149 G46 S2P S N N 150 G46 O3P O N N 151 G46 "O5'" O N N 152 G46 "C5'" C N N 153 G46 "C4'" C N R 154 G46 "O4'" O N N 155 G46 "C3'" C N S 156 G46 "O3'" O N N 157 G46 "C2'" C N R 158 G46 "C1'" C N R 159 G46 "O2'" O N N 160 G46 N9 N Y N 161 G46 C8 C Y N 162 G46 N7 N Y N 163 G46 C5 C Y N 164 G46 C6 C N N 165 G46 O6 O N N 166 G46 N1 N N N 167 G46 C2 C N N 168 G46 N2 N N N 169 G46 N3 N N N 170 G46 C4 C Y N 171 G46 H1P H N N 172 G46 HS H N N 173 G46 "H5'1" H N N 174 G46 "H5'2" H N N 175 G46 "H4'" H N N 176 G46 "H3'" H N N 177 G46 HA H N N 178 G46 "H2'" H N N 179 G46 "H1'" H N N 180 G46 HB H N N 181 G46 H8 H N N 182 G46 H1 H N N 183 G46 H2N1 H N N 184 G46 H2N2 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 LCC "O5'" O N N 189 LCC "C5'" C N N 190 LCC "C4'" C N R 191 LCC "O4'" O N N 192 LCC "C1'" C N R 193 LCC N1 N N N 194 LCC C6 C N N 195 LCC C5 C N N 196 LCC C5M C N N 197 LCC C4 C N N 198 LCC N4 N N N 199 LCC N3 N N N 200 LCC C2 C N N 201 LCC O2 O N N 202 LCC "C3'" C N S 203 LCC "C2'" C N R 204 LCC "O2'" O N N 205 LCC "O3'" O N N 206 LCC "C6'" C N N 207 LCC P P N N 208 LCC O1P O N N 209 LCC O2P O N N 210 LCC OXT O N N 211 LCC "H5'1" H N N 212 LCC "H5'2" H N N 213 LCC "H1'" H N N 214 LCC H6 H N N 215 LCC H5M1 H N N 216 LCC H5M2 H N N 217 LCC H5M3 H N N 218 LCC H41 H N N 219 LCC H42 H N N 220 LCC "H3'" H N N 221 LCC "H2'1" H N N 222 LCC H3T H N N 223 LCC "H6'1" H N N 224 LCC "H6'2" H N N 225 LCC H1P H N N 226 LCC HXT H N N 227 LCG P P N N 228 LCG OP1 O N N 229 LCG "O5'" O N N 230 LCG "C5'" C N N 231 LCG "C3'" C N S 232 LCG "C6'" C N N 233 LCG N9 N Y N 234 LCG C8 C Y N 235 LCG C4 C Y N 236 LCG N7 N Y N 237 LCG C5 C Y N 238 LCG C6 C N N 239 LCG "C2'" C N R 240 LCG O6 O N N 241 LCG "C4'" C N R 242 LCG "C1'" C N R 243 LCG C2 C N N 244 LCG N1 N N N 245 LCG "O4'" O N N 246 LCG OP2 O N N 247 LCG N2 N N N 248 LCG N3 N N N 249 LCG "O2'" O N N 250 LCG "O3'" O N N 251 LCG OP3 O N N 252 LCG "H5'" H N N 253 LCG "H5''" H N N 254 LCG "H3'" H N N 255 LCG "H6'1" H N N 256 LCG "H6'2" H N N 257 LCG H8 H N N 258 LCG "H2'" H N N 259 LCG "H1'" H N N 260 LCG H1 H N N 261 LCG HOP2 H N N 262 LCG H21 H N N 263 LCG H22 H N N 264 LCG "HO3'" H N N 265 LCG HOP3 H N N 266 MG MG MG N N 267 U OP3 O N N 268 U P P N N 269 U OP1 O N N 270 U OP2 O N N 271 U "O5'" O N N 272 U "C5'" C N N 273 U "C4'" C N R 274 U "O4'" O N N 275 U "C3'" C N S 276 U "O3'" O N N 277 U "C2'" C N R 278 U "O2'" O N N 279 U "C1'" C N R 280 U N1 N N N 281 U C2 C N N 282 U O2 O N N 283 U N3 N N N 284 U C4 C N N 285 U O4 O N N 286 U C5 C N N 287 U C6 C N N 288 U HOP3 H N N 289 U HOP2 H N N 290 U "H5'" H N N 291 U "H5''" H N N 292 U "H4'" H N N 293 U "H3'" H N N 294 U "HO3'" H N N 295 U "H2'" H N N 296 U "HO2'" H N N 297 U "H1'" H N N 298 U H3 H N N 299 U H5 H N N 300 U H6 H N N 301 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DGP P OP1 doub N N 76 DGP P OP2 sing N N 77 DGP P OP3 sing N N 78 DGP P "O5'" sing N N 79 DGP OP2 HOP2 sing N N 80 DGP OP3 HOP3 sing N N 81 DGP "O5'" "C5'" sing N N 82 DGP "C5'" "C4'" sing N N 83 DGP "C5'" "H5'" sing N N 84 DGP "C5'" "H5''" sing N N 85 DGP "C4'" "O4'" sing N N 86 DGP "C4'" "C3'" sing N N 87 DGP "C4'" "H4'" sing N N 88 DGP "O4'" "C1'" sing N N 89 DGP "C3'" "O3'" sing N N 90 DGP "C3'" "C2'" sing N N 91 DGP "C3'" "H3'" sing N N 92 DGP "O3'" "HO3'" sing N N 93 DGP "C2'" "C1'" sing N N 94 DGP "C2'" "H2'" sing N N 95 DGP "C2'" "H2''" sing N N 96 DGP "C1'" N9 sing N N 97 DGP "C1'" "H1'" sing N N 98 DGP N9 C8 sing Y N 99 DGP N9 C4 sing Y N 100 DGP C8 N7 doub Y N 101 DGP C8 H8 sing N N 102 DGP N7 C5 sing Y N 103 DGP C5 C6 sing N N 104 DGP C5 C4 doub Y N 105 DGP C6 O6 doub N N 106 DGP C6 N1 sing N N 107 DGP N1 C2 sing N N 108 DGP N1 HN1 sing N N 109 DGP C2 N2 sing N N 110 DGP C2 N3 doub N N 111 DGP N2 HN21 sing N N 112 DGP N2 HN22 sing N N 113 DGP N3 C4 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 G46 P O1P sing N N 155 G46 P S2P sing N N 156 G46 P O3P doub N N 157 G46 P "O5'" sing N N 158 G46 O1P H1P sing N N 159 G46 S2P HS sing N N 160 G46 "O5'" "C5'" sing N N 161 G46 "C5'" "C4'" sing N N 162 G46 "C5'" "H5'1" sing N N 163 G46 "C5'" "H5'2" sing N N 164 G46 "C4'" "O4'" sing N N 165 G46 "C4'" "C3'" sing N N 166 G46 "C4'" "H4'" sing N N 167 G46 "O4'" "C1'" sing N N 168 G46 "C3'" "O3'" sing N N 169 G46 "C3'" "C2'" sing N N 170 G46 "C3'" "H3'" sing N N 171 G46 "O3'" HA sing N N 172 G46 "C2'" "C1'" sing N N 173 G46 "C2'" "O2'" sing N N 174 G46 "C2'" "H2'" sing N N 175 G46 "C1'" N9 sing N N 176 G46 "C1'" "H1'" sing N N 177 G46 "O2'" HB sing N N 178 G46 N9 C8 sing Y N 179 G46 N9 C4 sing Y N 180 G46 C8 N7 doub Y N 181 G46 C8 H8 sing N N 182 G46 N7 C5 sing Y N 183 G46 C5 C6 sing N N 184 G46 C5 C4 doub Y N 185 G46 C6 O6 doub N N 186 G46 C6 N1 sing N N 187 G46 N1 C2 sing N N 188 G46 N1 H1 sing N N 189 G46 C2 N2 sing N N 190 G46 C2 N3 doub N N 191 G46 N2 H2N1 sing N N 192 G46 N2 H2N2 sing N N 193 G46 N3 C4 sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 LCC "O5'" "C5'" sing N N 197 LCC "O5'" P sing N N 198 LCC "C5'" "C4'" sing N N 199 LCC "C5'" "H5'1" sing N N 200 LCC "C5'" "H5'2" sing N N 201 LCC "C4'" "O4'" sing N N 202 LCC "C4'" "C3'" sing N N 203 LCC "C4'" "C6'" sing N N 204 LCC "O4'" "C1'" sing N N 205 LCC "C1'" N1 sing N N 206 LCC "C1'" "C2'" sing N N 207 LCC "C1'" "H1'" sing N N 208 LCC N1 C6 sing N N 209 LCC N1 C2 sing N N 210 LCC C6 C5 doub N N 211 LCC C6 H6 sing N N 212 LCC C5 C5M sing N N 213 LCC C5 C4 sing N N 214 LCC C5M H5M1 sing N N 215 LCC C5M H5M2 sing N N 216 LCC C5M H5M3 sing N N 217 LCC C4 N4 sing N N 218 LCC C4 N3 doub N N 219 LCC N4 H41 sing N N 220 LCC N4 H42 sing N N 221 LCC N3 C2 sing N N 222 LCC C2 O2 doub N N 223 LCC "C3'" "C2'" sing N N 224 LCC "C3'" "O3'" sing N N 225 LCC "C3'" "H3'" sing N N 226 LCC "C2'" "O2'" sing N N 227 LCC "C2'" "H2'1" sing N N 228 LCC "O2'" "C6'" sing N N 229 LCC "O3'" H3T sing N N 230 LCC "C6'" "H6'1" sing N N 231 LCC "C6'" "H6'2" sing N N 232 LCC P O1P sing N N 233 LCC P O2P doub N N 234 LCC P OXT sing N N 235 LCC O1P H1P sing N N 236 LCC OXT HXT sing N N 237 LCG P OP1 doub N N 238 LCG P "O5'" sing N N 239 LCG P OP2 sing N N 240 LCG P OP3 sing N N 241 LCG "O5'" "C5'" sing N N 242 LCG "C5'" "C4'" sing N N 243 LCG "C5'" "H5'" sing N N 244 LCG "C5'" "H5''" sing N N 245 LCG "C3'" "C2'" sing N N 246 LCG "C3'" "C4'" sing N N 247 LCG "C3'" "O3'" sing N N 248 LCG "C3'" "H3'" sing N N 249 LCG "C6'" "C4'" sing N N 250 LCG "C6'" "O2'" sing N N 251 LCG "C6'" "H6'1" sing N N 252 LCG "C6'" "H6'2" sing N N 253 LCG N9 C8 sing Y N 254 LCG N9 C4 sing Y N 255 LCG N9 "C1'" sing N N 256 LCG C8 N7 doub Y N 257 LCG C8 H8 sing N N 258 LCG C4 C5 doub Y N 259 LCG C4 N3 sing N N 260 LCG N7 C5 sing Y N 261 LCG C5 C6 sing N N 262 LCG C6 O6 doub N N 263 LCG C6 N1 sing N N 264 LCG "C2'" "C1'" sing N N 265 LCG "C2'" "O2'" sing N N 266 LCG "C2'" "H2'" sing N N 267 LCG "C4'" "O4'" sing N N 268 LCG "C1'" "O4'" sing N N 269 LCG "C1'" "H1'" sing N N 270 LCG C2 N1 sing N N 271 LCG C2 N2 sing N N 272 LCG C2 N3 doub N N 273 LCG N1 H1 sing N N 274 LCG OP2 HOP2 sing N N 275 LCG N2 H21 sing N N 276 LCG N2 H22 sing N N 277 LCG "O3'" "HO3'" sing N N 278 LCG OP3 HOP3 sing N N 279 U OP3 P sing N N 280 U OP3 HOP3 sing N N 281 U P OP1 doub N N 282 U P OP2 sing N N 283 U P "O5'" sing N N 284 U OP2 HOP2 sing N N 285 U "O5'" "C5'" sing N N 286 U "C5'" "C4'" sing N N 287 U "C5'" "H5'" sing N N 288 U "C5'" "H5''" sing N N 289 U "C4'" "O4'" sing N N 290 U "C4'" "C3'" sing N N 291 U "C4'" "H4'" sing N N 292 U "O4'" "C1'" sing N N 293 U "C3'" "O3'" sing N N 294 U "C3'" "C2'" sing N N 295 U "C3'" "H3'" sing N N 296 U "O3'" "HO3'" sing N N 297 U "C2'" "O2'" sing N N 298 U "C2'" "C1'" sing N N 299 U "C2'" "H2'" sing N N 300 U "O2'" "HO2'" sing N N 301 U "C1'" N1 sing N N 302 U "C1'" "H1'" sing N N 303 U N1 C2 sing N N 304 U N1 C6 sing N N 305 U C2 O2 doub N N 306 U C2 N3 sing N N 307 U N3 C4 sing N N 308 U N3 H3 sing N N 309 U C4 O4 doub N N 310 U C4 C5 sing N N 311 U C5 C6 doub N N 312 U C5 H5 sing N N 313 U C6 H6 sing N N 314 # _ndb_struct_conf_na.entry_id 8VAX _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.225 -0.168 -0.063 -3.086 -14.485 0.094 1 AAA_LCG4:C13_BBB AAA 4 ? BBB 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.044 -0.098 0.050 3.129 -9.786 -4.220 2 AAA_A5:U12_BBB AAA 5 ? BBB 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.180 -0.159 -0.015 9.108 -15.349 -1.410 3 AAA_C6:G11_BBB AAA 6 ? BBB 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.057 -0.112 -0.107 4.492 -15.174 1.490 4 AAA_U7:A10_BBB AAA 7 ? BBB 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.064 -0.110 -0.028 5.121 -10.355 2.955 5 AAA_U8:A9_BBB AAA 8 ? BBB 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.000 -0.098 0.125 -1.258 -16.292 5.428 6 AAA_A9:U8_BBB AAA 9 ? BBB 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.006 -0.162 0.010 -3.615 -12.883 1.508 7 AAA_A10:U7_BBB AAA 10 ? BBB 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.180 -0.170 0.000 -7.105 -15.522 -1.648 8 AAA_G11:C6_BBB AAA 11 ? BBB 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.002 -0.123 0.129 -3.042 -10.418 -4.433 9 AAA_U12:A5_BBB AAA 12 ? BBB 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.234 -0.183 0.074 2.951 -13.737 -0.518 10 AAA_C13:LCG4_BBB AAA 13 ? BBB 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.359 -1.123 3.124 -1.308 4.760 32.780 -2.716 0.425 2.948 8.375 2.301 33.140 1 AAAAAA_LCG4A5:U12C13_BBBBBB AAA 4 ? BBB 13 ? AAA 5 ? BBB 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.493 -1.515 3.104 0.741 3.772 32.596 -3.280 -0.755 2.925 6.691 -1.314 32.816 2 AAAAAA_A5C6:G11U12_BBBBBB AAA 5 ? BBB 12 ? AAA 6 ? BBB 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.376 -1.849 3.337 -1.787 11.293 28.564 -5.529 0.387 2.463 21.816 3.452 30.723 3 AAAAAA_C6U7:A10G11_BBBBBB AAA 6 ? BBB 11 ? AAA 7 ? BBB 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.164 -1.141 3.262 -3.044 9.952 31.311 -3.619 -0.203 2.782 17.832 5.455 32.954 4 AAAAAA_U7U8:A9A10_BBBBBB AAA 7 ? BBB 10 ? AAA 8 ? BBB 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.381 -1.437 3.213 0.336 18.882 31.770 -4.511 -0.564 2.069 31.279 -0.556 36.835 5 AAAAAA_U8A9:U8A9_BBBBBB AAA 8 ? BBB 9 ? AAA 9 ? BBB 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.366 -1.430 3.276 1.128 7.581 31.542 -3.826 0.844 2.850 13.694 -2.038 32.437 6 AAAAAA_A9A10:U7U8_BBBBBB AAA 9 ? BBB 8 ? AAA 10 ? BBB 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.106 -1.582 3.304 1.600 8.691 30.636 -4.383 0.083 2.765 16.034 -2.952 31.855 7 AAAAAA_A10G11:C6U7_BBBBBB AAA 10 ? BBB 7 ? AAA 11 ? BBB 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.469 -1.428 3.153 -1.677 4.152 32.572 -3.191 0.559 2.973 7.359 2.972 32.870 8 AAAAAA_G11U12:A5C6_BBBBBB AAA 11 ? BBB 6 ? AAA 12 ? BBB 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.619 -1.225 3.104 2.046 4.116 33.342 -2.741 -0.758 2.967 7.131 -3.545 33.648 9 AAAAAA_U12C13:LCG4A5_BBBBBB AAA 12 ? BBB 5 ? AAA 13 ? BBB 4 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'CHE 2104708' _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id G46 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id G46 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5L00 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8VAX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.023004 _atom_sites.fract_transf_matrix[1][2] 0.013281 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026563 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011921 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 MG 12 12 5.427 2.828 2.176 79.261 1.228 0.381 2.310 7.194 0.859 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.115 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_