data_8A71 # _entry.id 8A71 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8A71 pdb_00008a71 10.2210/pdb8a71/pdb WWPDB D_1292123551 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-02-22 2 'Structure model' 1 1 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8A71 _pdbx_database_status.recvd_initial_deposition_date 2022-06-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 7atg unspecified PDB . 4hig unspecified PDB . 4hif unspecified PDB . 4r15 unspecified PDB . 5jzq unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 mariuszj@amu.edu.pl Mariusz Jaskolski ? 'principal investigator/group leader' 0000-0003-1587-6489 3 mirek@amu.edu.pl Miroslaw Gilski ? 'principal investigator/group leader' 0000-0002-3941-9947 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Drozdzal, P.' 1 0000-0001-8431-1305 'Manszewski, T.' 2 0000-0003-4128-3652 'Gilski, M.' 3 0000-0002-3941-9947 'Brzezinski, K.' 4 0000-0001-9339-7745 'Jaskolski, M.' 5 0000-0003-1587-6489 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr D Struct Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2059-7983 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 79 _citation.language ? _citation.page_first 133 _citation.page_last 139 _citation.title 'Right-handed Z-DNA at ultrahigh resolution: a tale of two hands and the power of the crystallographic method.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2059798322011937 _citation.pdbx_database_id_PubMed 36762859 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Drozdzal, P.' 1 0000-0001-8431-1305 primary 'Manszewski, T.' 2 0000-0003-4128-3652 primary 'Gilski, M.' 3 0000-0002-3941-9947 primary 'Brzezinski, K.' 4 0000-0001-9339-7745 primary 'Jaskolski, M.' 5 0000-0003-1587-6489 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Right-handed Z-DNA' 1810.205 2 ? ? ? 'Since oligonucleotides contained the enantiomeric 2-deoxy-L-ribose, the Z-DNA duplex is right-handed.' 2 non-polymer syn 5-azaniumylpentylazanium 104.194 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(0DC)(0DG)(0DC)(0DG)(0DC)(0DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 5-azaniumylpentylazanium LB9 3 'POTASSIUM ION' K 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 0DC n 1 2 0DG n 1 3 0DC n 1 4 0DG n 1 5 0DC n 1 6 0DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0DC 'L-DNA linking' . ;2'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONOPHOSPHATE ; ? 'C9 H14 N3 O7 P' 307.197 0DG 'L-DNA linking' . ;2'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOPHOSPHATE ; ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LB9 non-polymer n 5-azaniumylpentylazanium 'cadaverine (protonated)' 'C5 H16 N2 2' 104.194 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 0DC 1 1 1 0DC 0DC A . n A 1 2 0DG 2 2 2 0DG 0DG A . n A 1 3 0DC 3 3 3 0DC 0DC A . n A 1 4 0DG 4 4 4 0DG 0DG A . n A 1 5 0DC 5 5 5 0DC 0DC A . n A 1 6 0DG 6 6 6 0DG 0DG A . n B 1 1 0DC 1 7 7 0DC 0DC B . n B 1 2 0DG 2 8 8 0DG 0DG B . n B 1 3 0DC 3 9 9 0DC 0DC B . n B 1 4 0DG 4 10 10 0DG 0DG B . n B 1 5 0DC 5 11 11 0DC 0DC B . n B 1 6 0DG 6 12 12 0DG 0DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LB9 1 101 1000 LB9 N2P A . D 3 K 1 102 1200 K K A . E 4 HOH 1 201 50 HOH HOH A . E 4 HOH 2 202 44 HOH HOH A . E 4 HOH 3 203 119 HOH HOH A . E 4 HOH 4 204 113 HOH HOH A . E 4 HOH 5 205 47 HOH HOH A . E 4 HOH 6 206 68 HOH HOH A . E 4 HOH 7 207 104 HOH HOH A . E 4 HOH 8 208 11 HOH HOH A . E 4 HOH 9 209 92 HOH HOH A . E 4 HOH 10 210 69 HOH HOH A . E 4 HOH 11 211 115 HOH HOH A . E 4 HOH 12 212 28 HOH HOH A . E 4 HOH 13 213 121 HOH HOH A . E 4 HOH 14 214 38 HOH HOH A . E 4 HOH 15 215 72 HOH HOH A . E 4 HOH 16 216 116 HOH HOH A . E 4 HOH 17 217 91 HOH HOH A . E 4 HOH 18 218 12 HOH HOH A . E 4 HOH 19 219 76 HOH HOH A . E 4 HOH 20 220 9 HOH HOH A . E 4 HOH 21 221 23 HOH HOH A . E 4 HOH 22 222 3 HOH HOH A . E 4 HOH 23 223 8 HOH HOH A . E 4 HOH 24 224 78 HOH HOH A . E 4 HOH 25 225 82 HOH HOH A . E 4 HOH 26 226 15 HOH HOH A . E 4 HOH 27 227 4 HOH HOH A . E 4 HOH 28 228 98 HOH HOH A . E 4 HOH 29 229 6 HOH HOH A . E 4 HOH 30 230 20 HOH HOH A . E 4 HOH 31 231 13 HOH HOH A . E 4 HOH 32 232 21 HOH HOH A . E 4 HOH 33 233 95 HOH HOH A . E 4 HOH 34 234 93 HOH HOH A . E 4 HOH 35 235 27 HOH HOH A . E 4 HOH 36 236 43 HOH HOH A . E 4 HOH 37 237 32 HOH HOH A . E 4 HOH 38 238 120 HOH HOH A . E 4 HOH 39 239 56 HOH HOH A . E 4 HOH 40 240 101 HOH HOH A . E 4 HOH 41 241 24 HOH HOH A . E 4 HOH 42 242 26 HOH HOH A . E 4 HOH 43 243 96 HOH HOH A . E 4 HOH 44 244 81 HOH HOH A . E 4 HOH 45 245 35 HOH HOH A . E 4 HOH 46 246 105 HOH HOH A . E 4 HOH 47 247 87 HOH HOH A . E 4 HOH 48 248 18 HOH HOH A . E 4 HOH 49 249 75 HOH HOH A . E 4 HOH 50 250 84 HOH HOH A . E 4 HOH 51 251 25 HOH HOH A . E 4 HOH 52 252 31 HOH HOH A . E 4 HOH 53 253 100 HOH HOH A . E 4 HOH 54 254 71 HOH HOH A . E 4 HOH 55 255 29 HOH HOH A . E 4 HOH 56 256 99 HOH HOH A . E 4 HOH 57 257 111 HOH HOH A . E 4 HOH 58 258 83 HOH HOH A . E 4 HOH 59 259 85 HOH HOH A . E 4 HOH 60 260 45 HOH HOH A . E 4 HOH 61 261 80 HOH HOH A . E 4 HOH 62 262 117 HOH HOH A . E 4 HOH 63 263 107 HOH HOH A . E 4 HOH 64 264 52 HOH HOH A . E 4 HOH 65 265 51 HOH HOH A . E 4 HOH 66 266 118 HOH HOH A . E 4 HOH 67 267 88 HOH HOH A . E 4 HOH 68 268 55 HOH HOH A . F 4 HOH 1 101 67 HOH HOH B . F 4 HOH 2 102 70 HOH HOH B . F 4 HOH 3 103 61 HOH HOH B . F 4 HOH 4 104 73 HOH HOH B . F 4 HOH 5 105 60 HOH HOH B . F 4 HOH 6 106 5 HOH HOH B . F 4 HOH 7 107 14 HOH HOH B . F 4 HOH 8 108 19 HOH HOH B . F 4 HOH 9 109 1 HOH HOH B . F 4 HOH 10 110 112 HOH HOH B . F 4 HOH 11 111 39 HOH HOH B . F 4 HOH 12 112 62 HOH HOH B . F 4 HOH 13 113 7 HOH HOH B . F 4 HOH 14 114 106 HOH HOH B . F 4 HOH 15 115 22 HOH HOH B . F 4 HOH 16 116 2 HOH HOH B . F 4 HOH 17 117 46 HOH HOH B . F 4 HOH 18 118 34 HOH HOH B . F 4 HOH 19 119 10 HOH HOH B . F 4 HOH 20 120 36 HOH HOH B . F 4 HOH 21 121 33 HOH HOH B . F 4 HOH 22 122 40 HOH HOH B . F 4 HOH 23 123 59 HOH HOH B . F 4 HOH 24 124 66 HOH HOH B . F 4 HOH 25 125 114 HOH HOH B . F 4 HOH 26 126 103 HOH HOH B . F 4 HOH 27 127 53 HOH HOH B . F 4 HOH 28 128 58 HOH HOH B . F 4 HOH 29 129 64 HOH HOH B . F 4 HOH 30 130 77 HOH HOH B . F 4 HOH 31 131 90 HOH HOH B . F 4 HOH 32 132 110 HOH HOH B . F 4 HOH 33 133 30 HOH HOH B . F 4 HOH 34 134 48 HOH HOH B . F 4 HOH 35 135 79 HOH HOH B . F 4 HOH 36 136 41 HOH HOH B . F 4 HOH 37 137 57 HOH HOH B . F 4 HOH 38 138 17 HOH HOH B . F 4 HOH 39 139 108 HOH HOH B . F 4 HOH 40 140 37 HOH HOH B . F 4 HOH 41 141 42 HOH HOH B . F 4 HOH 42 142 63 HOH HOH B . F 4 HOH 43 143 49 HOH HOH B . F 4 HOH 44 144 74 HOH HOH B . F 4 HOH 45 145 54 HOH HOH B . F 4 HOH 46 146 94 HOH HOH B . F 4 HOH 47 147 16 HOH HOH B . F 4 HOH 48 148 65 HOH HOH B . F 4 HOH 49 149 97 HOH HOH B . F 4 HOH 50 150 86 HOH HOH B . F 4 HOH 51 151 109 HOH HOH B . F 4 HOH 52 152 102 HOH HOH B . F 4 HOH 53 153 89 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 1 ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 2 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8A71 _cell.details ? _cell.formula_units_Z ? _cell.length_a 17.914 _cell.length_a_esd ? _cell.length_b 31.127 _cell.length_b_esd ? _cell.length_c 44.106 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8A71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8A71 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.70 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 27.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.5 MM DNA WATER SOLUTION MIXED 1:1 V/ V WITH 10% MPD, 14 MM CADAVERINE DI-HCL, 12 MM NACL, 80 MM KCL, 40 MM SODIUM CACODYLATE AND EQUILIBRATED AGAINST 80% MPD ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7085 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.7085 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 5.963 _reflns.entry_id 8A71 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.69 _reflns.d_resolution_low 25.43 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 73968 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.92 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.095 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.992 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 0.69 _reflns_shell.d_res_low 0.74 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.02 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 10347 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.395 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.486 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.786 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 52.730 _refine.B_iso_mean 7.0004 _refine.B_iso_min 3.090 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ;THE REFINEMENT WAS CARRIED OUT AGAINST SEPARATE BIJVOET PAIRS. ANISOTROPIC ATOMIC DISPLACEMENT PARAMETERS WERE USED. HYDROGEN ATOMS WERE ADDED AT RIDING POSITION. THE FINAL REFINEMENT WAS CALCULATED USING WEIGHTED FULL- MATRIX LEAST-SQUARES PROCEDURE AND ALL REFLECTIONS. CONFORMATION-DEPENDENT GEOMETRICAL RESTRAINTS ON BOND LENGTHS AND BOND ANGLES FOR THE POLYNUCLEOTIDE CHAINS WERE GENERATED USING THE RESTRAINLIB SERVER: http://achesym.ibch.poznan.pl/restraintlib/) AS DESCRIBED BY Kowiel et al. (2016, 2020) AND Gilski et al. (2019). ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8A71 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.69 _refine.ls_d_res_low 25.43 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 72088 _refine.ls_number_reflns_R_free 1880 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.3 _refine.ls_percent_reflns_R_free 2.54 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1059 _refine.ls_R_factor_R_free 0.1283 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1054 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7atg _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.69 _refine_hist.d_res_low 25.43 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 369 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # _struct.entry_id 8A71 _struct.title ;Crystal structure of right-handed Z-DNA containing 2'-deoxy-L-ribose in complex with the polyamine cadaverine and potassium cations at ultrahigh resolution ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8A71 _struct_keywords.text 'Z-DNA, DNA, Right-handed Z-DNA, Cadaverine, Potassium, Cadaverinium cation, Biogenic polyamines, 2-deoxy-L-ribose' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8A71 _struct_ref.pdbx_db_accession 8A71 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8A71 A 1 ? 6 ? 8A71 1 ? 6 ? 1 6 2 1 8A71 B 1 ? 6 ? 8A71 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 800 ? 1 MORE -6 ? 1 'SSA (A^2)' 2500 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A 0DC 1 "O3'" ? ? ? 1_555 A 0DG 2 P ? ? A 0DC 1 A 0DG 2 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale2 covale both ? A 0DG 2 "O3'" ? ? ? 1_555 A 0DC 3 P ? ? A 0DG 2 A 0DC 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale3 covale both ? A 0DC 3 "O3'" A ? ? 1_555 A 0DG 4 P A ? A 0DC 3 A 0DG 4 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale4 covale both ? A 0DC 3 "O3'" B ? ? 1_555 A 0DG 4 P B ? A 0DC 3 A 0DG 4 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale5 covale both ? A 0DG 4 "O3'" A ? ? 1_555 A 0DC 5 P A ? A 0DG 4 A 0DC 5 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale6 covale both ? A 0DG 4 "O3'" B ? ? 1_555 A 0DC 5 P B ? A 0DG 4 A 0DC 5 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale7 covale both ? A 0DC 5 "O3'" A ? ? 1_555 A 0DG 6 P A ? A 0DC 5 A 0DG 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale8 covale both ? A 0DC 5 "O3'" B ? ? 1_555 A 0DG 6 P B ? A 0DC 5 A 0DG 6 1_555 ? ? ? ? ? ? ? 1.565 ? ? covale9 covale both ? B 0DC 1 "O3'" ? ? ? 1_555 B 0DG 2 P ? ? B 0DC 7 B 0DG 8 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale10 covale both ? B 0DG 2 "O3'" A ? ? 1_555 B 0DC 3 P A ? B 0DG 8 B 0DC 9 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale11 covale both ? B 0DG 2 "O3'" B ? ? 1_555 B 0DC 3 P B ? B 0DG 8 B 0DC 9 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale12 covale both ? B 0DC 3 "O3'" ? ? ? 1_555 B 0DG 4 P ? ? B 0DC 9 B 0DG 10 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale13 covale both ? B 0DG 4 "O3'" ? ? ? 1_555 B 0DC 5 P ? ? B 0DG 10 B 0DC 11 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale14 covale both ? B 0DC 5 "O3'" ? ? ? 1_555 B 0DG 6 P ? ? B 0DC 11 B 0DG 12 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? A 0DG 6 OP2 B ? ? 1_555 D K . K ? ? A 0DG 6 A K 102 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc2 metalc ? ? A 0DG 6 "O5'" A ? ? 1_555 D K . K ? ? A 0DG 6 A K 102 1_555 ? ? ? ? ? ? ? 3.416 ? ? metalc3 metalc ? ? A 0DG 6 "O5'" B ? ? 1_555 D K . K ? ? A 0DG 6 A K 102 1_555 ? ? ? ? ? ? ? 2.986 ? ? metalc4 metalc ? ? D K . K ? ? ? 1_555 E HOH . O ? ? A K 102 A HOH 208 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc5 metalc ? ? D K . K ? ? ? 1_555 E HOH . O ? ? A K 102 A HOH 227 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc6 metalc ? ? D K . K ? ? ? 1_555 E HOH . O A ? A K 102 A HOH 263 1_555 ? ? ? ? ? ? ? 2.822 ? ? metalc7 metalc ? ? D K . K ? ? ? 1_555 E HOH . O B ? A K 102 A HOH 263 1_555 ? ? ? ? ? ? ? 3.017 ? ? metalc8 metalc ? ? D K . K ? ? ? 3_645 B 0DC 3 OP1 A ? A K 102 B 0DC 9 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc9 metalc ? ? D K . K ? ? ? 3_645 B 0DC 3 OP2 A ? A K 102 B 0DC 9 1_555 ? ? ? ? ? ? ? 3.005 ? ? hydrog1 hydrog ? ? A 0DC 1 N3 ? ? ? 1_555 B 0DG 6 N1 ? ? A 0DC 1 B 0DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A 0DC 1 N4 ? ? ? 1_555 B 0DG 6 O6 ? ? A 0DC 1 B 0DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A 0DC 1 O2 ? ? ? 1_555 B 0DG 6 N2 ? ? A 0DC 1 B 0DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 0DG 2 N1 ? ? ? 1_555 B 0DC 5 N3 ? ? A 0DG 2 B 0DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 0DG 2 N2 ? ? ? 1_555 B 0DC 5 O2 ? ? A 0DG 2 B 0DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 0DG 2 O6 ? ? ? 1_555 B 0DC 5 N4 ? ? A 0DG 2 B 0DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 0DC 3 N3 ? ? ? 1_555 B 0DG 4 N1 ? ? A 0DC 3 B 0DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A 0DC 3 N4 ? ? ? 1_555 B 0DG 4 O6 ? ? A 0DC 3 B 0DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A 0DC 3 O2 ? ? ? 1_555 B 0DG 4 N2 ? ? A 0DC 3 B 0DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A 0DG 4 N1 ? ? ? 1_555 B 0DC 3 N3 ? ? A 0DG 4 B 0DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A 0DG 4 N2 ? ? ? 1_555 B 0DC 3 O2 ? ? A 0DG 4 B 0DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A 0DG 4 O6 ? ? ? 1_555 B 0DC 3 N4 ? ? A 0DG 4 B 0DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A 0DC 5 N3 ? ? ? 1_555 B 0DG 2 N1 ? ? A 0DC 5 B 0DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 0DC 5 N4 ? ? ? 1_555 B 0DG 2 O6 ? ? A 0DC 5 B 0DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 0DC 5 O2 ? ? ? 1_555 B 0DG 2 N2 ? ? A 0DC 5 B 0DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A 0DG 6 N1 ? ? ? 1_555 B 0DC 1 N3 ? ? A 0DG 6 B 0DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A 0DG 6 N2 ? ? ? 1_555 B 0DC 1 O2 ? ? A 0DG 6 B 0DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A 0DG 6 O6 ? ? ? 1_555 B 0DC 1 N4 ? ? A 0DG 6 B 0DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 48.9 ? 2 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 50.4 ? 3 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 2.2 ? 4 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? E HOH . ? A HOH 208 ? 1_555 91.8 ? 5 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? E HOH . ? A HOH 208 ? 1_555 118.1 ? 6 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? E HOH . ? A HOH 208 ? 1_555 117.1 ? 7 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? E HOH . ? A HOH 227 ? 1_555 109.1 ? 8 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? E HOH . ? A HOH 227 ? 1_555 76.6 ? 9 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? E HOH . ? A HOH 227 ? 1_555 74.4 ? 10 O ? E HOH . ? A HOH 208 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? E HOH . ? A HOH 227 ? 1_555 75.7 ? 11 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O A E HOH . ? A HOH 263 ? 1_555 81.7 ? 12 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O A E HOH . ? A HOH 263 ? 1_555 127.0 ? 13 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O A E HOH . ? A HOH 263 ? 1_555 129.0 ? 14 O ? E HOH . ? A HOH 208 ? 1_555 K ? D K . ? A K 102 ? 1_555 O A E HOH . ? A HOH 263 ? 1_555 74.6 ? 15 O ? E HOH . ? A HOH 227 ? 1_555 K ? D K . ? A K 102 ? 1_555 O A E HOH . ? A HOH 263 ? 1_555 148.7 ? 16 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O B E HOH . ? A HOH 263 ? 1_555 75.5 ? 17 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O B E HOH . ? A HOH 263 ? 1_555 109.2 ? 18 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O B E HOH . ? A HOH 263 ? 1_555 111.4 ? 19 O ? E HOH . ? A HOH 208 ? 1_555 K ? D K . ? A K 102 ? 1_555 O B E HOH . ? A HOH 263 ? 1_555 100.9 ? 20 O ? E HOH . ? A HOH 227 ? 1_555 K ? D K . ? A K 102 ? 1_555 O B E HOH . ? A HOH 263 ? 1_555 174.2 ? 21 O A E HOH . ? A HOH 263 ? 1_555 K ? D K . ? A K 102 ? 1_555 O B E HOH . ? A HOH 263 ? 1_555 26.8 ? 22 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 21.2 ? 23 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 28.0 ? 24 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 29.3 ? 25 O ? E HOH . ? A HOH 208 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 102.1 ? 26 O ? E HOH . ? A HOH 227 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 93.4 ? 27 O A E HOH . ? A HOH 263 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 102.2 ? 28 O B E HOH . ? A HOH 263 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 91.9 ? 29 OP2 B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 17.0 ? 30 "O5'" A A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 32.0 ? 31 "O5'" B A 0DG 6 ? A 0DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 33.4 ? 32 O ? E HOH . ? A HOH 208 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 102.2 ? 33 O ? E HOH . ? A HOH 227 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 98.4 ? 34 O A E HOH . ? A HOH 263 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 97.3 ? 35 O B E HOH . ? A HOH 263 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 86.8 ? 36 OP1 A B 0DC 3 ? B 0DC 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 OP2 A B 0DC 3 ? B 0DC 9 ? 1_555 5.1 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B 0DG 8 ? B "O3'" B 0DG 8 ? B P B 0DC 9 ? B 129.99 119.70 10.29 1.20 Y 2 1 "O3'" B 0DG 8 ? B P B 0DC 9 ? B OP2 B 0DC 9 ? B 124.96 110.50 14.46 1.10 Y # _phasing.method MR # _pdbx_entry_details.entry_id 8A71 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id A _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 153 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.53 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0DC OP3 O N N 1 0DC P P N N 2 0DC OP1 O N N 3 0DC OP2 O N N 4 0DC "O5'" O N N 5 0DC "C5'" C N N 6 0DC "C4'" C N S 7 0DC "O4'" O N N 8 0DC "C3'" C N R 9 0DC "O3'" O N N 10 0DC "C2'" C N N 11 0DC "C1'" C N S 12 0DC N1 N N N 13 0DC C2 C N N 14 0DC O2 O N N 15 0DC N3 N N N 16 0DC C4 C N N 17 0DC N4 N N N 18 0DC C5 C N N 19 0DC C6 C N N 20 0DC HOP3 H N N 21 0DC HOP2 H N N 22 0DC "H5'" H N N 23 0DC "H5''" H N N 24 0DC "H4'" H N N 25 0DC "H3'" H N N 26 0DC "HO3'" H N N 27 0DC "H2'" H N N 28 0DC "H2''" H N N 29 0DC "H1'" H N N 30 0DC H41 H N N 31 0DC H42 H N N 32 0DC H5 H N N 33 0DC H6 H N N 34 0DG OP3 O N N 35 0DG P P N N 36 0DG OP1 O N N 37 0DG OP2 O N N 38 0DG "O5'" O N N 39 0DG "C5'" C N N 40 0DG "C4'" C N S 41 0DG "O4'" O N N 42 0DG "C3'" C N R 43 0DG "O3'" O N N 44 0DG "C2'" C N N 45 0DG "C1'" C N S 46 0DG N9 N Y N 47 0DG C8 C Y N 48 0DG N7 N Y N 49 0DG C5 C Y N 50 0DG C6 C N N 51 0DG O6 O N N 52 0DG N1 N N N 53 0DG C2 C N N 54 0DG N2 N N N 55 0DG N3 N N N 56 0DG C4 C Y N 57 0DG HOP3 H N N 58 0DG HOP2 H N N 59 0DG "H5'" H N N 60 0DG "H5''" H N N 61 0DG "H4'" H N N 62 0DG "H3'" H N N 63 0DG "HO3'" H N N 64 0DG "H2'" H N N 65 0DG "H2''" H N N 66 0DG "H1'" H N N 67 0DG H8 H N N 68 0DG H1 H N N 69 0DG H21 H N N 70 0DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 K K K N N 75 LB9 C1 C N N 76 LB9 C2 C N N 77 LB9 C3 C N N 78 LB9 C4 C N N 79 LB9 NE2 N N N 80 LB9 C5 C N N 81 LB9 N1 N N N 82 LB9 H1C1 H N N 83 LB9 H1C2 H N N 84 LB9 H2C1 H N N 85 LB9 H2C2 H N N 86 LB9 H3C1 H N N 87 LB9 H3C2 H N N 88 LB9 H4C1 H N N 89 LB9 H4C2 H N N 90 LB9 HE21 H N N 91 LB9 HE22 H N N 92 LB9 H11 H N N 93 LB9 H5C1 H N N 94 LB9 H5C2 H N N 95 LB9 H1N1 H N N 96 LB9 H1N2 H N N 97 LB9 H16 H N N 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DC OP3 P sing N N 1 0DC OP3 HOP3 sing N N 2 0DC P OP1 doub N N 3 0DC P OP2 sing N N 4 0DC P "O5'" sing N N 5 0DC OP2 HOP2 sing N N 6 0DC "O5'" "C5'" sing N N 7 0DC "C5'" "C4'" sing N N 8 0DC "C5'" "H5'" sing N N 9 0DC "C5'" "H5''" sing N N 10 0DC "C4'" "O4'" sing N N 11 0DC "C4'" "C3'" sing N N 12 0DC "C4'" "H4'" sing N N 13 0DC "O4'" "C1'" sing N N 14 0DC "C3'" "O3'" sing N N 15 0DC "C3'" "C2'" sing N N 16 0DC "C3'" "H3'" sing N N 17 0DC "O3'" "HO3'" sing N N 18 0DC "C2'" "C1'" sing N N 19 0DC "C2'" "H2'" sing N N 20 0DC "C2'" "H2''" sing N N 21 0DC "C1'" N1 sing N N 22 0DC "C1'" "H1'" sing N N 23 0DC N1 C2 sing N N 24 0DC N1 C6 sing N N 25 0DC C2 O2 doub N N 26 0DC C2 N3 sing N N 27 0DC N3 C4 doub N N 28 0DC C4 N4 sing N N 29 0DC C4 C5 sing N N 30 0DC N4 H41 sing N N 31 0DC N4 H42 sing N N 32 0DC C5 C6 doub N N 33 0DC C5 H5 sing N N 34 0DC C6 H6 sing N N 35 0DG OP3 P sing N N 36 0DG OP3 HOP3 sing N N 37 0DG P OP1 doub N N 38 0DG P OP2 sing N N 39 0DG P "O5'" sing N N 40 0DG OP2 HOP2 sing N N 41 0DG "O5'" "C5'" sing N N 42 0DG "C5'" "C4'" sing N N 43 0DG "C5'" "H5'" sing N N 44 0DG "C5'" "H5''" sing N N 45 0DG "C4'" "O4'" sing N N 46 0DG "C4'" "C3'" sing N N 47 0DG "C4'" "H4'" sing N N 48 0DG "O4'" "C1'" sing N N 49 0DG "C3'" "O3'" sing N N 50 0DG "C3'" "C2'" sing N N 51 0DG "C3'" "H3'" sing N N 52 0DG "O3'" "HO3'" sing N N 53 0DG "C2'" "C1'" sing N N 54 0DG "C2'" "H2'" sing N N 55 0DG "C2'" "H2''" sing N N 56 0DG "C1'" N9 sing N N 57 0DG "C1'" "H1'" sing N N 58 0DG N9 C8 sing Y N 59 0DG N9 C4 sing Y N 60 0DG C8 N7 doub Y N 61 0DG C8 H8 sing N N 62 0DG N7 C5 sing Y N 63 0DG C5 C6 sing N N 64 0DG C5 C4 doub Y N 65 0DG C6 O6 doub N N 66 0DG C6 N1 sing N N 67 0DG N1 C2 sing N N 68 0DG N1 H1 sing N N 69 0DG C2 N2 sing N N 70 0DG C2 N3 doub N N 71 0DG N2 H21 sing N N 72 0DG N2 H22 sing N N 73 0DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 LB9 NE2 C1 sing N N 77 LB9 C1 C2 sing N N 78 LB9 C2 C3 sing N N 79 LB9 C3 C4 sing N N 80 LB9 C4 C5 sing N N 81 LB9 C5 N1 sing N N 82 LB9 C1 H1C1 sing N N 83 LB9 C1 H1C2 sing N N 84 LB9 C2 H2C1 sing N N 85 LB9 C2 H2C2 sing N N 86 LB9 C3 H3C1 sing N N 87 LB9 C3 H3C2 sing N N 88 LB9 C4 H4C1 sing N N 89 LB9 C4 H4C2 sing N N 90 LB9 NE2 HE21 sing N N 91 LB9 NE2 HE22 sing N N 92 LB9 NE2 H11 sing N N 93 LB9 C5 H5C1 sing N N 94 LB9 C5 H5C2 sing N N 95 LB9 N1 H1N1 sing N N 96 LB9 N1 H1N2 sing N N 97 LB9 N1 H16 sing N N 98 # _ndb_struct_conf_na.entry_id 8A71 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A 0DC 1 1_555 B 0DG 6 1_555 0.270 -0.130 0.127 3.414 -0.258 -1.348 1 A_0DC1:0DG12_B A 1 ? B 12 ? 19 1 1 A 0DG 2 1_555 B 0DC 5 1_555 -0.274 -0.137 -0.003 -5.988 1.388 -2.214 2 A_0DG2:0DC11_B A 2 ? B 11 ? 19 1 1 A 0DC 3 1_555 B 0DG 4 1_555 0.243 -0.159 0.026 2.892 3.258 -2.943 3 A_0DC3:0DG10_B A 3 ? B 10 ? 19 1 1 A 0DG 4 1_555 B 0DC 3 1_555 -0.195 -0.113 0.059 -5.442 1.383 -2.500 4 A_0DG4:0DC9_B A 4 ? B 9 ? 19 1 1 A 0DC 5 1_555 B 0DG 2 1_555 0.210 -0.115 -0.018 2.103 0.850 -1.698 5 A_0DC5:0DG8_B A 5 ? B 8 ? 19 1 1 A 0DG 6 1_555 B 0DC 1 1_555 -0.242 -0.112 0.137 2.411 -0.966 -1.452 6 A_0DG6:0DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A 0DC 1 1_555 B 0DG 6 1_555 A 0DG 2 1_555 B 0DC 5 1_555 -0.076 5.399 3.679 0.433 2.005 6.091 35.532 3.403 5.165 18.204 -3.929 6.427 1 AA_0DC10DG2:0DC110DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A 0DG 2 1_555 B 0DC 5 1_555 A 0DC 3 1_555 B 0DG 4 1_555 0.013 -1.089 3.238 0.052 6.415 51.646 -1.658 -0.011 3.091 7.330 -0.060 52.016 2 AA_0DG20DC3:0DG100DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A 0DC 3 1_555 B 0DG 4 1_555 A 0DG 4 1_555 B 0DC 3 1_555 0.023 5.426 3.681 -0.285 2.980 5.453 27.660 -2.351 5.824 28.650 2.744 6.221 3 AA_0DC30DG4:0DC90DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A 0DG 4 1_555 B 0DC 3 1_555 A 0DC 5 1_555 B 0DG 2 1_555 0.210 -0.924 3.287 0.166 3.810 53.292 -1.268 -0.223 3.220 4.242 -0.184 53.418 4 AA_0DG40DC5:0DG80DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A 0DC 5 1_555 B 0DG 2 1_555 A 0DG 6 1_555 B 0DC 1 1_555 -0.118 5.251 3.444 0.499 2.660 8.379 25.854 2.337 4.855 17.608 -3.304 8.805 5 AA_0DC50DG6:0DC70DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _pdbx_audit_support.funding_organization 'Polish National Science Centre' _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number 2013/10/M/NZ1/00251 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7ATG _pdbx_initial_refinement_model.details ? # _pdbx_related_exp_data_set.ordinal 1 _pdbx_related_exp_data_set.data_reference 10.18150/D5XSNJ _pdbx_related_exp_data_set.metadata_reference 10.18150/D5XSNJ _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details ? # _atom_sites.entry_id 8A71 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.055822 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032126 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022673 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K N O P # loop_