data_8E5D # _entry.id 8E5D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8E5D pdb_00008e5d 10.2210/pdb8e5d/pdb WWPDB D_1000267877 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8E5D _pdbx_database_status.recvd_initial_deposition_date 2022-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yin, L.L.' 1 ? 'Shi, K.' 2 0000-0003-4175-3714 'Aihara, H.' 3 0000-0001-7508-6230 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 30 _citation.language ? _citation.page_first 1153 _citation.page_last 1159 _citation.title 'Structural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-023-01034-3 _citation.pdbx_database_id_PubMed 37460895 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yin, L.' 1 ? primary 'Shi, K.' 2 ? primary 'Aihara, H.' 3 0000-0001-7508-6230 # _cell.entry_id 8E5D _cell.length_a 31.699 _cell.length_b 94.611 _cell.length_c 138.465 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E5D _symmetry.space_group_name_H-M 'P 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Double-stranded DNA deaminase toxin A' 14686.213 1 3.5.4.- E1347A ? ? 2 polymer syn ;DNA (5'-D(*GP*TP*AP*CP*CP*GP*GP*AP*CP*GP*TP*TP*GP*C)-3') ; 4296.791 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*AP*CP*CP*GP*GP*AP*CP*GP*TP*TP*GP*C)-3') ; 4265.780 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 7 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DddA,Cytidine deaminase,CD' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSYALGPYQISAPQLPAYNGQTVGTFYYVNDAGGLESKVFSSGGPTPYPNYANAGHVAGQSALFMRDNGISEGLVFHNNP EGTCGFCVNMTETLLPENAKMTVVPPEGAIPVKRGATGETKVFTGNSNSPKSPHHHHHH ; ;GSYALGPYQISAPQLPAYNGQTVGTFYYVNDAGGLESKVFSSGGPTPYPNYANAGHVAGQSALFMRDNGISEGLVFHNNP EGTCGFCVNMTETLLPENAKMTVVPPEGAIPVKRGATGETKVFTGNSNSPKSPHHHHHH ; A ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DC)(DC)(DG)(DG)(DA)(DC)(DG)(DT)(DT)(DG)(DC)' GTACCGGACGTTGC C ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DA)(DC)(DG)(DT)(DC)(DC)(DG)(DG)(DT)(DA)(DC)' GCAACGTCCGGTAC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 TYR n 1 4 ALA n 1 5 LEU n 1 6 GLY n 1 7 PRO n 1 8 TYR n 1 9 GLN n 1 10 ILE n 1 11 SER n 1 12 ALA n 1 13 PRO n 1 14 GLN n 1 15 LEU n 1 16 PRO n 1 17 ALA n 1 18 TYR n 1 19 ASN n 1 20 GLY n 1 21 GLN n 1 22 THR n 1 23 VAL n 1 24 GLY n 1 25 THR n 1 26 PHE n 1 27 TYR n 1 28 TYR n 1 29 VAL n 1 30 ASN n 1 31 ASP n 1 32 ALA n 1 33 GLY n 1 34 GLY n 1 35 LEU n 1 36 GLU n 1 37 SER n 1 38 LYS n 1 39 VAL n 1 40 PHE n 1 41 SER n 1 42 SER n 1 43 GLY n 1 44 GLY n 1 45 PRO n 1 46 THR n 1 47 PRO n 1 48 TYR n 1 49 PRO n 1 50 ASN n 1 51 TYR n 1 52 ALA n 1 53 ASN n 1 54 ALA n 1 55 GLY n 1 56 HIS n 1 57 VAL n 1 58 ALA n 1 59 GLY n 1 60 GLN n 1 61 SER n 1 62 ALA n 1 63 LEU n 1 64 PHE n 1 65 MET n 1 66 ARG n 1 67 ASP n 1 68 ASN n 1 69 GLY n 1 70 ILE n 1 71 SER n 1 72 GLU n 1 73 GLY n 1 74 LEU n 1 75 VAL n 1 76 PHE n 1 77 HIS n 1 78 ASN n 1 79 ASN n 1 80 PRO n 1 81 GLU n 1 82 GLY n 1 83 THR n 1 84 CYS n 1 85 GLY n 1 86 PHE n 1 87 CYS n 1 88 VAL n 1 89 ASN n 1 90 MET n 1 91 THR n 1 92 GLU n 1 93 THR n 1 94 LEU n 1 95 LEU n 1 96 PRO n 1 97 GLU n 1 98 ASN n 1 99 ALA n 1 100 LYS n 1 101 MET n 1 102 THR n 1 103 VAL n 1 104 VAL n 1 105 PRO n 1 106 PRO n 1 107 GLU n 1 108 GLY n 1 109 ALA n 1 110 ILE n 1 111 PRO n 1 112 VAL n 1 113 LYS n 1 114 ARG n 1 115 GLY n 1 116 ALA n 1 117 THR n 1 118 GLY n 1 119 GLU n 1 120 THR n 1 121 LYS n 1 122 VAL n 1 123 PHE n 1 124 THR n 1 125 GLY n 1 126 ASN n 1 127 SER n 1 128 ASN n 1 129 SER n 1 130 PRO n 1 131 LYS n 1 132 SER n 1 133 PRO n 1 134 HIS n 1 135 HIS n 1 136 HIS n 1 137 HIS n 1 138 HIS n 1 139 HIS n 2 1 DG n 2 2 DT n 2 3 DA n 2 4 DC n 2 5 DC n 2 6 DG n 2 7 DG n 2 8 DA n 2 9 DC n 2 10 DG n 2 11 DT n 2 12 DT n 2 13 DG n 2 14 DC n 3 1 DG n 3 2 DC n 3 3 DA n 3 4 DA n 3 5 DC n 3 6 DG n 3 7 DT n 3 8 DC n 3 9 DC n 3 10 DG n 3 11 DG n 3 12 DT n 3 13 DA n 3 14 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 139 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene dddA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia cenocepacia' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 95486 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 14 'synthetic construct' ? 32630 ? 3 1 sample 1 14 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DDDA_BURC1 P0DUH5 ? 1 ;GSYALGPYQISAPQLPAYNGQTVGTFYYVNDAGGLESKVFSSGGPTPYPNYANAGHVEGQSALFMRDNGISEGLVFHNNP EGTCGFCVNMTETLLPENAKMTVVPPEGAIPVKRGATGETKVFTGNSNSPKSP ; 1290 2 PDB 8E5D 8E5D ? 2 ? 1 3 PDB 8E5D 8E5D ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8E5D A 1 ? 133 ? P0DUH5 1290 ? 1422 ? 1290 1422 2 2 8E5D C 1 ? 14 ? 8E5D 1 ? 14 ? 1 14 3 3 8E5D B 1 ? 14 ? 8E5D 1 ? 14 ? 1 14 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8E5D ALA A 58 ? UNP P0DUH5 GLU 1347 'engineered mutation' 1347 1 1 8E5D HIS A 134 ? UNP P0DUH5 ? ? 'expression tag' 1423 2 1 8E5D HIS A 135 ? UNP P0DUH5 ? ? 'expression tag' 1424 3 1 8E5D HIS A 136 ? UNP P0DUH5 ? ? 'expression tag' 1425 4 1 8E5D HIS A 137 ? UNP P0DUH5 ? ? 'expression tag' 1426 5 1 8E5D HIS A 138 ? UNP P0DUH5 ? ? 'expression tag' 1427 6 1 8E5D HIS A 139 ? UNP P0DUH5 ? ? 'expression tag' 1428 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8E5D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.49 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 72.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M sodium dihydrogen phosphate, 20 % polyethylene glycol 3350' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-06-21 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979180 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979180 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 47.22 _reflns.entry_id 8E5D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.39 _reflns.d_resolution_low 47.150 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13177 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_netI_over_av_sigmaI 8.7 _reflns.pdbx_netI_over_sigmaI 5.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.101 _reflns.pdbx_Rpim_I_all 0.042 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.39 _reflns_shell.d_res_low 2.55 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 659 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.240 _reflns_shell.pdbx_Rpim_I_all 0.485 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.804 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.139 _reflns_shell.pdbx_Rsym_value 1.139 _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8E5D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.39 _refine.ls_d_res_low 44.77 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13172 _refine.ls_number_reflns_R_free 677 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 76.39 _refine.ls_percent_reflns_R_free 5.14 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1997 _refine.ls_R_factor_R_free 0.2326 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1979 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6U08 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.24 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.29 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.39 _refine_hist.d_res_low 44.77 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 1591 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1004 _refine_hist.pdbx_number_atoms_nucleic_acid 568 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 25.812 ? 639 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.047 ? 258 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 220 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.39 2.48 . . 21 325 21.00 . . . . 0.3942 . . . . . . . . . . . 0.4224 'X-RAY DIFFRACTION' 2.48 2.58 . . 28 471 30.00 . . . . 0.3050 . . . . . . . . . . . 0.3711 'X-RAY DIFFRACTION' 2.58 2.70 . . 46 690 43.00 . . . . 0.2996 . . . . . . . . . . . 0.3373 'X-RAY DIFFRACTION' 2.70 2.84 . . 62 1208 75.00 . . . . 0.2926 . . . . . . . . . . . 0.2920 'X-RAY DIFFRACTION' 2.84 3.02 . . 92 1544 97.00 . . . . 0.2912 . . . . . . . . . . . 0.3154 'X-RAY DIFFRACTION' 3.02 3.25 . . 84 1633 100.00 . . . . 0.2483 . . . . . . . . . . . 0.2641 'X-RAY DIFFRACTION' 3.25 3.58 . . 82 1633 100.00 . . . . 0.2130 . . . . . . . . . . . 0.2764 'X-RAY DIFFRACTION' 3.58 4.09 . . 94 1605 98.00 . . . . 0.1856 . . . . . . . . . . . 0.2265 'X-RAY DIFFRACTION' 4.09 5.15 . . 84 1651 99.00 . . . . 0.1445 . . . . . . . . . . . 0.1673 'X-RAY DIFFRACTION' 5.16 44.77 . . 84 1735 96.00 . . . . 0.1561 . . . . . . . . . . . 0.1788 # _struct.entry_id 8E5D _struct.title ;Crystal structure of double-stranded DNA deaminase toxin DddA in complex with DNA with the target cytosine parked in the major groove ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8E5D _struct_keywords.text 'toxin, DNA binding, deaminase, TOXIN-DNA complex' _struct_keywords.pdbx_keywords TOXIN/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 56 ? GLY A 69 ? HIS A 1345 GLY A 1358 1 ? 14 HELX_P HELX_P2 AA2 CYS A 84 ? LEU A 95 ? CYS A 1373 LEU A 1384 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 56 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 1345 A ZN 1501 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc2 metalc ? ? A CYS 84 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1373 A ZN 1501 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc3 metalc ? ? A CYS 87 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1376 A ZN 1501 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc4 metalc ? ? A GLU 92 O ? ? ? 1_555 E MG . MG ? ? A GLU 1381 A MG 1502 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc5 metalc ? ? A THR 93 O ? ? ? 1_555 E MG . MG ? ? A THR 1382 A MG 1502 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc6 metalc ? ? A LEU 95 O ? ? ? 1_555 E MG . MG ? ? A LEU 1384 A MG 1502 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc7 metalc ? ? A ASN 126 O ? ? ? 1_555 E MG . MG ? ? A ASN 1415 A MG 1502 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc8 metalc ? ? A ASN 126 OD1 ? ? ? 1_555 E MG . MG ? ? A ASN 1415 A MG 1502 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc9 metalc ? ? A ASN 128 O ? ? ? 1_555 E MG . MG ? ? A ASN 1417 A MG 1502 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc10 metalc ? ? D ZN . ZN ? ? ? 1_555 F PO4 . O1 ? ? A ZN 1501 A PO4 1503 1_555 ? ? ? ? ? ? ? 1.938 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 14 N3 ? ? C DG 1 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 14 O2 ? ? C DG 1 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 14 N4 ? ? C DG 1 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 13 N1 ? ? C DT 2 B DA 13 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog5 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 12 N3 ? ? C DA 3 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 12 O4 ? ? C DA 3 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 11 N1 ? ? C DC 4 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 11 O6 ? ? C DC 4 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 11 N2 ? ? C DC 4 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 10 N1 ? ? C DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 10 O6 ? ? C DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 10 N2 ? ? C DC 5 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? C DG 6 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? C DG 6 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? C DG 6 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DT 7 O4 ? ? C DG 7 B DT 7 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog17 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 6 N1 ? ? C DC 9 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 6 O6 ? ? C DC 9 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 6 N2 ? ? C DC 9 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 5 N3 ? ? C DG 10 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 5 O2 ? ? C DG 10 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 5 N4 ? ? C DG 10 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 4 N1 ? ? C DT 11 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 4 N6 ? ? C DT 11 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? C DT 12 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? C DT 12 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 2 N3 ? ? C DG 13 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 2 O2 ? ? C DG 13 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 2 N4 ? ? C DG 13 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 1 N1 ? ? C DC 14 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 1 O6 ? ? C DC 14 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 1 N2 ? ? C DC 14 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 2 ? LEU A 5 ? SER A 1291 LEU A 1294 AA1 2 TYR A 8 ? SER A 11 ? TYR A 1297 SER A 1300 AA2 1 LEU A 35 ? SER A 41 ? LEU A 1324 SER A 1330 AA2 2 VAL A 23 ? VAL A 29 ? VAL A 1312 VAL A 1318 AA2 3 GLU A 72 ? HIS A 77 ? GLU A 1361 HIS A 1366 AA2 4 LYS A 100 ? VAL A 104 ? LYS A 1389 VAL A 1393 AA2 5 LYS A 121 ? THR A 124 ? LYS A 1410 THR A 1413 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 5 ? N LEU A 1294 O TYR A 8 ? O TYR A 1297 AA2 1 2 O GLU A 36 ? O GLU A 1325 N TYR A 28 ? N TYR A 1317 AA2 2 3 N TYR A 27 ? N TYR A 1316 O LEU A 74 ? O LEU A 1363 AA2 3 4 N VAL A 75 ? N VAL A 1364 O VAL A 104 ? O VAL A 1393 AA2 4 5 N VAL A 103 ? N VAL A 1392 O LYS A 121 ? O LYS A 1410 # _atom_sites.entry_id 8E5D _atom_sites.fract_transf_matrix[1][1] 0.031547 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010570 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007222 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1290 1290 GLY GLY A . n A 1 2 SER 2 1291 1291 SER SER A . n A 1 3 TYR 3 1292 1292 TYR TYR A . n A 1 4 ALA 4 1293 1293 ALA ALA A . n A 1 5 LEU 5 1294 1294 LEU LEU A . n A 1 6 GLY 6 1295 1295 GLY GLY A . n A 1 7 PRO 7 1296 1296 PRO PRO A . n A 1 8 TYR 8 1297 1297 TYR TYR A . n A 1 9 GLN 9 1298 1298 GLN GLN A . n A 1 10 ILE 10 1299 1299 ILE ILE A . n A 1 11 SER 11 1300 1300 SER SER A . n A 1 12 ALA 12 1301 1301 ALA ALA A . n A 1 13 PRO 13 1302 1302 PRO PRO A . n A 1 14 GLN 14 1303 1303 GLN GLN A . n A 1 15 LEU 15 1304 1304 LEU LEU A . n A 1 16 PRO 16 1305 1305 PRO PRO A . n A 1 17 ALA 17 1306 1306 ALA ALA A . n A 1 18 TYR 18 1307 1307 TYR TYR A . n A 1 19 ASN 19 1308 1308 ASN ASN A . n A 1 20 GLY 20 1309 1309 GLY GLY A . n A 1 21 GLN 21 1310 1310 GLN GLN A . n A 1 22 THR 22 1311 1311 THR THR A . n A 1 23 VAL 23 1312 1312 VAL VAL A . n A 1 24 GLY 24 1313 1313 GLY GLY A . n A 1 25 THR 25 1314 1314 THR THR A . n A 1 26 PHE 26 1315 1315 PHE PHE A . n A 1 27 TYR 27 1316 1316 TYR TYR A . n A 1 28 TYR 28 1317 1317 TYR TYR A . n A 1 29 VAL 29 1318 1318 VAL VAL A . n A 1 30 ASN 30 1319 1319 ASN ASN A . n A 1 31 ASP 31 1320 1320 ASP ASP A . n A 1 32 ALA 32 1321 1321 ALA ALA A . n A 1 33 GLY 33 1322 1322 GLY GLY A . n A 1 34 GLY 34 1323 1323 GLY GLY A . n A 1 35 LEU 35 1324 1324 LEU LEU A . n A 1 36 GLU 36 1325 1325 GLU GLU A . n A 1 37 SER 37 1326 1326 SER SER A . n A 1 38 LYS 38 1327 1327 LYS LYS A . n A 1 39 VAL 39 1328 1328 VAL VAL A . n A 1 40 PHE 40 1329 1329 PHE PHE A . n A 1 41 SER 41 1330 1330 SER SER A . n A 1 42 SER 42 1331 1331 SER SER A . n A 1 43 GLY 43 1332 1332 GLY GLY A . n A 1 44 GLY 44 1333 1333 GLY GLY A . n A 1 45 PRO 45 1334 1334 PRO PRO A . n A 1 46 THR 46 1335 1335 THR THR A . n A 1 47 PRO 47 1336 1336 PRO PRO A . n A 1 48 TYR 48 1337 1337 TYR TYR A . n A 1 49 PRO 49 1338 1338 PRO PRO A . n A 1 50 ASN 50 1339 1339 ASN ASN A . n A 1 51 TYR 51 1340 1340 TYR TYR A . n A 1 52 ALA 52 1341 1341 ALA ALA A . n A 1 53 ASN 53 1342 1342 ASN ASN A . n A 1 54 ALA 54 1343 1343 ALA ALA A . n A 1 55 GLY 55 1344 1344 GLY GLY A . n A 1 56 HIS 56 1345 1345 HIS HIS A . n A 1 57 VAL 57 1346 1346 VAL VAL A . n A 1 58 ALA 58 1347 1347 ALA ALA A . n A 1 59 GLY 59 1348 1348 GLY GLY A . n A 1 60 GLN 60 1349 1349 GLN GLN A . n A 1 61 SER 61 1350 1350 SER SER A . n A 1 62 ALA 62 1351 1351 ALA ALA A . n A 1 63 LEU 63 1352 1352 LEU LEU A . n A 1 64 PHE 64 1353 1353 PHE PHE A . n A 1 65 MET 65 1354 1354 MET MET A . n A 1 66 ARG 66 1355 1355 ARG ARG A . n A 1 67 ASP 67 1356 1356 ASP ASP A . n A 1 68 ASN 68 1357 1357 ASN ASN A . n A 1 69 GLY 69 1358 1358 GLY GLY A . n A 1 70 ILE 70 1359 1359 ILE ILE A . n A 1 71 SER 71 1360 1360 SER SER A . n A 1 72 GLU 72 1361 1361 GLU GLU A . n A 1 73 GLY 73 1362 1362 GLY GLY A . n A 1 74 LEU 74 1363 1363 LEU LEU A . n A 1 75 VAL 75 1364 1364 VAL VAL A . n A 1 76 PHE 76 1365 1365 PHE PHE A . n A 1 77 HIS 77 1366 1366 HIS HIS A . n A 1 78 ASN 78 1367 1367 ASN ASN A . n A 1 79 ASN 79 1368 1368 ASN ASN A . n A 1 80 PRO 80 1369 1369 PRO PRO A . n A 1 81 GLU 81 1370 1370 GLU GLU A . n A 1 82 GLY 82 1371 1371 GLY GLY A . n A 1 83 THR 83 1372 1372 THR THR A . n A 1 84 CYS 84 1373 1373 CYS CYS A . n A 1 85 GLY 85 1374 1374 GLY GLY A . n A 1 86 PHE 86 1375 1375 PHE PHE A . n A 1 87 CYS 87 1376 1376 CYS CYS A . n A 1 88 VAL 88 1377 1377 VAL VAL A . n A 1 89 ASN 89 1378 1378 ASN ASN A . n A 1 90 MET 90 1379 1379 MET MET A . n A 1 91 THR 91 1380 1380 THR THR A . n A 1 92 GLU 92 1381 1381 GLU GLU A . n A 1 93 THR 93 1382 1382 THR THR A . n A 1 94 LEU 94 1383 1383 LEU LEU A . n A 1 95 LEU 95 1384 1384 LEU LEU A . n A 1 96 PRO 96 1385 1385 PRO PRO A . n A 1 97 GLU 97 1386 1386 GLU GLU A . n A 1 98 ASN 98 1387 1387 ASN ASN A . n A 1 99 ALA 99 1388 1388 ALA ALA A . n A 1 100 LYS 100 1389 1389 LYS LYS A . n A 1 101 MET 101 1390 1390 MET MET A . n A 1 102 THR 102 1391 1391 THR THR A . n A 1 103 VAL 103 1392 1392 VAL VAL A . n A 1 104 VAL 104 1393 1393 VAL VAL A . n A 1 105 PRO 105 1394 1394 PRO PRO A . n A 1 106 PRO 106 1395 1395 PRO PRO A . n A 1 107 GLU 107 1396 1396 GLU GLU A . n A 1 108 GLY 108 1397 1397 GLY GLY A . n A 1 109 ALA 109 1398 1398 ALA ALA A . n A 1 110 ILE 110 1399 1399 ILE ILE A . n A 1 111 PRO 111 1400 1400 PRO PRO A . n A 1 112 VAL 112 1401 1401 VAL VAL A . n A 1 113 LYS 113 1402 1402 LYS LYS A . n A 1 114 ARG 114 1403 1403 ARG ARG A . n A 1 115 GLY 115 1404 1404 GLY GLY A . n A 1 116 ALA 116 1405 1405 ALA ALA A . n A 1 117 THR 117 1406 1406 THR THR A . n A 1 118 GLY 118 1407 1407 GLY GLY A . n A 1 119 GLU 119 1408 1408 GLU GLU A . n A 1 120 THR 120 1409 1409 THR THR A . n A 1 121 LYS 121 1410 1410 LYS LYS A . n A 1 122 VAL 122 1411 1411 VAL VAL A . n A 1 123 PHE 123 1412 1412 PHE PHE A . n A 1 124 THR 124 1413 1413 THR THR A . n A 1 125 GLY 125 1414 1414 GLY GLY A . n A 1 126 ASN 126 1415 1415 ASN ASN A . n A 1 127 SER 127 1416 1416 SER SER A . n A 1 128 ASN 128 1417 1417 ASN ASN A . n A 1 129 SER 129 1418 1418 SER SER A . n A 1 130 PRO 130 1419 1419 PRO PRO A . n A 1 131 LYS 131 1420 1420 LYS LYS A . n A 1 132 SER 132 1421 1421 SER SER A . n A 1 133 PRO 133 1422 1422 PRO PRO A . n A 1 134 HIS 134 1423 1423 HIS HIS A . n A 1 135 HIS 135 1424 1424 HIS HIS A . n A 1 136 HIS 136 1425 1425 HIS HIS A . n A 1 137 HIS 137 1426 ? ? ? A . n A 1 138 HIS 138 1427 ? ? ? A . n A 1 139 HIS 139 1428 ? ? ? A . n B 2 1 DG 1 1 1 DG DG C . n B 2 2 DT 2 2 2 DT DT C . n B 2 3 DA 3 3 3 DA DA C . n B 2 4 DC 4 4 4 DC DC C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 DG 6 6 6 DG DG C . n B 2 7 DG 7 7 7 DG DG C . n B 2 8 DA 8 8 8 DA DA C . n B 2 9 DC 9 9 9 DC DC C . n B 2 10 DG 10 10 10 DG DG C . n B 2 11 DT 11 11 11 DT DT C . n B 2 12 DT 12 12 12 DT DT C . n B 2 13 DG 13 13 13 DG DG C . n B 2 14 DC 14 14 14 DC DC C . n C 3 1 DG 1 1 1 DG DG B . n C 3 2 DC 2 2 2 DC DC B . n C 3 3 DA 3 3 3 DA DA B . n C 3 4 DA 4 4 4 DA DA B . n C 3 5 DC 5 5 5 DC DC B . n C 3 6 DG 6 6 6 DG DG B . n C 3 7 DT 7 7 7 DT DT B . n C 3 8 DC 8 8 8 DC DC B . n C 3 9 DC 9 9 9 DC DC B . n C 3 10 DG 10 10 10 DG DG B . n C 3 11 DG 11 11 11 DG DG B . n C 3 12 DT 12 12 12 DT DT B . n C 3 13 DA 13 13 13 DA DA B . n C 3 14 DC 14 14 14 DC DC B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email aihar001@umn.edu _pdbx_contact_author.name_first Hideki _pdbx_contact_author.name_last Aihara _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7508-6230 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 1501 1501 ZN ZN A . E 5 MG 1 1502 1 MG MG A . F 6 PO4 1 1503 1 PO4 PO4 A . G 7 HOH 1 1601 10 HOH HOH A . G 7 HOH 2 1602 1 HOH HOH A . G 7 HOH 3 1603 12 HOH HOH A . G 7 HOH 4 1604 3 HOH HOH A . G 7 HOH 5 1605 7 HOH HOH A . H 7 HOH 1 101 13 HOH HOH C . H 7 HOH 2 102 4 HOH HOH C . H 7 HOH 3 103 9 HOH HOH C . I 7 HOH 1 101 2 HOH HOH B . I 7 HOH 2 102 6 HOH HOH B . I 7 HOH 3 103 8 HOH HOH B . I 7 HOH 4 104 5 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3640 ? 1 MORE -62 ? 1 'SSA (A^2)' 10830 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 56 ? A HIS 1345 ? 1_555 ZN ? D ZN . ? A ZN 1501 ? 1_555 SG ? A CYS 84 ? A CYS 1373 ? 1_555 113.0 ? 2 ND1 ? A HIS 56 ? A HIS 1345 ? 1_555 ZN ? D ZN . ? A ZN 1501 ? 1_555 SG ? A CYS 87 ? A CYS 1376 ? 1_555 108.1 ? 3 SG ? A CYS 84 ? A CYS 1373 ? 1_555 ZN ? D ZN . ? A ZN 1501 ? 1_555 SG ? A CYS 87 ? A CYS 1376 ? 1_555 109.2 ? 4 ND1 ? A HIS 56 ? A HIS 1345 ? 1_555 ZN ? D ZN . ? A ZN 1501 ? 1_555 O1 ? F PO4 . ? A PO4 1503 ? 1_555 99.8 ? 5 SG ? A CYS 84 ? A CYS 1373 ? 1_555 ZN ? D ZN . ? A ZN 1501 ? 1_555 O1 ? F PO4 . ? A PO4 1503 ? 1_555 99.1 ? 6 SG ? A CYS 87 ? A CYS 1376 ? 1_555 ZN ? D ZN . ? A ZN 1501 ? 1_555 O1 ? F PO4 . ? A PO4 1503 ? 1_555 127.3 ? 7 O ? A GLU 92 ? A GLU 1381 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A THR 93 ? A THR 1382 ? 1_555 81.9 ? 8 O ? A GLU 92 ? A GLU 1381 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A LEU 95 ? A LEU 1384 ? 1_555 87.3 ? 9 O ? A THR 93 ? A THR 1382 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A LEU 95 ? A LEU 1384 ? 1_555 81.8 ? 10 O ? A GLU 92 ? A GLU 1381 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 126 ? A ASN 1415 ? 1_555 108.7 ? 11 O ? A THR 93 ? A THR 1382 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 126 ? A ASN 1415 ? 1_555 169.4 ? 12 O ? A LEU 95 ? A LEU 1384 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 126 ? A ASN 1415 ? 1_555 97.4 ? 13 O ? A GLU 92 ? A GLU 1381 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 OD1 ? A ASN 126 ? A ASN 1415 ? 1_555 74.6 ? 14 O ? A THR 93 ? A THR 1382 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 OD1 ? A ASN 126 ? A ASN 1415 ? 1_555 118.7 ? 15 O ? A LEU 95 ? A LEU 1384 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 OD1 ? A ASN 126 ? A ASN 1415 ? 1_555 149.4 ? 16 O ? A ASN 126 ? A ASN 1415 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 OD1 ? A ASN 126 ? A ASN 1415 ? 1_555 66.6 ? 17 O ? A GLU 92 ? A GLU 1381 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 128 ? A ASN 1417 ? 1_555 147.9 ? 18 O ? A THR 93 ? A THR 1382 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 128 ? A ASN 1417 ? 1_555 84.0 ? 19 O ? A LEU 95 ? A LEU 1384 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 128 ? A ASN 1417 ? 1_555 119.1 ? 20 O ? A ASN 126 ? A ASN 1415 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 128 ? A ASN 1417 ? 1_555 87.2 ? 21 OD1 ? A ASN 126 ? A ASN 1415 ? 1_555 MG ? E MG . ? A MG 1502 ? 1_555 O ? A ASN 128 ? A ASN 1417 ? 1_555 87.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-24 2 'Structure model' 1 1 2023-07-19 3 'Structure model' 1 2 2023-08-02 4 'Structure model' 1 3 2023-08-30 5 'Structure model' 1 4 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' citation 7 4 'Structure model' citation_author 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.year' 7 3 'Structure model' '_citation.pdbx_database_id_PubMed' 8 3 'Structure model' '_citation.title' 9 3 'Structure model' '_citation_author.name' 10 4 'Structure model' '_citation.journal_volume' 11 4 'Structure model' '_citation.page_first' 12 4 'Structure model' '_citation.page_last' 13 4 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 2.2852 0.1992 -5.1203 0.2412 ? -0.0624 ? -0.1259 ? 0.5058 ? -0.3150 ? 0.5063 ? 1.1243 ? 1.6702 ? 0.4717 ? 2.5758 ? 1.1481 ? 2.3064 ? -0.4291 ? -0.1772 ? 0.5827 ? -0.2992 ? 0.1568 ? 0.3001 ? -0.3552 ? -0.1817 ? 0.3260 ? 2 'X-RAY DIFFRACTION' ? refined 4.4475 -17.7766 3.1458 0.6220 ? 0.2629 ? 0.0936 ? 0.6967 ? -0.1445 ? 0.2654 ? 0.6845 ? -0.0326 ? -0.6651 ? 0.0645 ? -0.2385 ? 1.8001 ? -0.2594 ? -0.3541 ? -0.0178 ? 0.4217 ? 0.0042 ? 0.0547 ? 0.3982 ? 0.0450 ? -0.1572 ? 3 'X-RAY DIFFRACTION' ? refined -6.9269 -7.4808 -3.1965 0.1707 ? 0.0498 ? 0.0410 ? 0.5111 ? -0.2392 ? 0.4601 ? 4.6544 ? 0.7263 ? -0.0297 ? 2.0784 ? 1.9428 ? 3.2947 ? -0.3612 ? -0.3678 ? 0.6968 ? 0.1244 ? -0.1682 ? 0.6095 ? 0.0018 ? -0.1633 ? 0.0073 ? 4 'X-RAY DIFFRACTION' ? refined -5.7407 -17.3382 -10.4999 0.1291 ? 0.0673 ? 0.0916 ? 0.3988 ? -0.1389 ? 0.3912 ? 3.3769 ? 0.2420 ? -0.1063 ? 1.7395 ? 0.9572 ? 1.6767 ? -0.2414 ? -0.2415 ? 0.3069 ? 0.1419 ? 0.0270 ? 0.2242 ? 0.0839 ? 0.0972 ? 0.2022 ? 5 'X-RAY DIFFRACTION' ? refined 4.2394 -19.7125 -12.6242 0.1796 ? -0.0056 ? 0.0622 ? 0.3833 ? -0.1063 ? 0.3325 ? 5.0890 ? -0.7812 ? -1.5193 ? 6.4025 ? 3.9842 ? 6.0979 ? -0.3251 ? -0.1473 ? 0.1617 ? 0.1768 ? 0.2367 ? 0.2060 ? 0.2894 ? 0.4538 ? -0.0111 ? 6 'X-RAY DIFFRACTION' ? refined -2.0792 -9.4064 -15.8804 0.1698 ? 0.0747 ? -0.0596 ? 0.2688 ? -0.1866 ? 0.3447 ? 5.2974 ? 4.1812 ? 4.2836 ? 3.8127 ? 3.5117 ? 5.8586 ? -0.3317 ? -0.3893 ? 1.1615 ? -0.3882 ? -0.3105 ? 0.6426 ? -0.6501 ? -0.4536 ? 0.9508 ? 7 'X-RAY DIFFRACTION' ? refined 13.8742 -18.9514 -7.7110 0.1579 ? 0.0972 ? 0.0022 ? 0.4390 ? -0.1017 ? 0.2049 ? 7.1880 ? -2.0723 ? -1.2324 ? 2.0919 ? -0.8882 ? 1.2462 ? -0.2962 ? -0.5703 ? 0.2044 ? 0.5252 ? 0.4831 ? -0.0468 ? 0.2100 ? 0.5411 ? -0.0398 ? 8 'X-RAY DIFFRACTION' ? refined 7.8426 -12.7680 -13.9532 0.1895 ? -0.0222 ? 0.0369 ? 0.4743 ? -0.0714 ? 0.3515 ? 5.9910 ? -4.6965 ? 4.8264 ? 6.0303 ? -2.7197 ? 5.5970 ? -0.3276 ? 0.1832 ? 0.9413 ? -0.3079 ? 0.0614 ? -0.8825 ? 0.2116 ? 0.2202 ? 0.2402 ? 9 'X-RAY DIFFRACTION' ? refined -9.6683 -25.2553 -21.4943 0.2000 ? 0.0435 ? -0.0324 ? 0.3875 ? -0.1569 ? 0.3618 ? 8.2375 ? 5.1560 ? -3.7794 ? 7.0419 ? -4.7170 ? 7.2551 ? -0.3100 ? -0.3120 ? -0.4165 ? -1.1105 ? -0.7024 ? 0.4360 ? 0.6055 ? 0.4584 ? 0.8517 ? 10 'X-RAY DIFFRACTION' ? refined 6.2836 -32.8443 -17.9004 0.4761 ? 0.0662 ? 0.0599 ? 0.5011 ? 0.0095 ? 0.3696 ? 4.8064 ? 0.9641 ? -0.3889 ? 2.7496 ? 1.8751 ? 1.5191 ? 0.0008 ? -0.6074 ? -0.9086 ? 0.7928 ? -0.2158 ? -0.1318 ? 0.8074 ? 0.3801 ? 0.2270 ? 11 'X-RAY DIFFRACTION' ? refined 4.1946 -35.4224 -15.3617 0.8795 ? -0.0424 ? 0.2825 ? 0.6042 ? 0.1197 ? 0.4439 ? 5.2691 ? -0.0394 ? -1.2310 ? 1.5760 ? -0.5520 ? 3.6750 ? -0.1362 ? -0.4288 ? -0.8019 ? 0.4940 ? 0.4209 ? 0.5014 ? 1.3817 ? -0.5007 ? 0.8235 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1290 through 1300 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1301 through 1311 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1312 through 1330 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1331 through 1366 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1367 through 1383 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1384 through 1393 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1394 through 1403 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1404 through 1413 ) ; 9 'X-RAY DIFFRACTION' 9 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1414 through 1425 ) ; 10 'X-RAY DIFFRACTION' 10 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 14 ) ; 11 'X-RAY DIFFRACTION' 11 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 14 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.7 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 8E5D _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 12 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 12 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DT _pdbx_validate_rmsd_angle.auth_seq_id_3 12 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.16 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 1.86 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 1422 ? ? -79.58 -169.22 2 1 HIS A 1424 ? ? -116.71 72.26 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 1426 ? A HIS 137 2 1 Y 1 A HIS 1427 ? A HIS 138 3 1 Y 1 A HIS 1428 ? A HIS 139 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 MG MG MG N N 393 PHE N N N N 394 PHE CA C N S 395 PHE C C N N 396 PHE O O N N 397 PHE CB C N N 398 PHE CG C Y N 399 PHE CD1 C Y N 400 PHE CD2 C Y N 401 PHE CE1 C Y N 402 PHE CE2 C Y N 403 PHE CZ C Y N 404 PHE OXT O N N 405 PHE H H N N 406 PHE H2 H N N 407 PHE HA H N N 408 PHE HB2 H N N 409 PHE HB3 H N N 410 PHE HD1 H N N 411 PHE HD2 H N N 412 PHE HE1 H N N 413 PHE HE2 H N N 414 PHE HZ H N N 415 PHE HXT H N N 416 PO4 P P N N 417 PO4 O1 O N N 418 PO4 O2 O N N 419 PO4 O3 O N N 420 PO4 O4 O N N 421 PRO N N N N 422 PRO CA C N S 423 PRO C C N N 424 PRO O O N N 425 PRO CB C N N 426 PRO CG C N N 427 PRO CD C N N 428 PRO OXT O N N 429 PRO H H N N 430 PRO HA H N N 431 PRO HB2 H N N 432 PRO HB3 H N N 433 PRO HG2 H N N 434 PRO HG3 H N N 435 PRO HD2 H N N 436 PRO HD3 H N N 437 PRO HXT H N N 438 SER N N N N 439 SER CA C N S 440 SER C C N N 441 SER O O N N 442 SER CB C N N 443 SER OG O N N 444 SER OXT O N N 445 SER H H N N 446 SER H2 H N N 447 SER HA H N N 448 SER HB2 H N N 449 SER HB3 H N N 450 SER HG H N N 451 SER HXT H N N 452 THR N N N N 453 THR CA C N S 454 THR C C N N 455 THR O O N N 456 THR CB C N R 457 THR OG1 O N N 458 THR CG2 C N N 459 THR OXT O N N 460 THR H H N N 461 THR H2 H N N 462 THR HA H N N 463 THR HB H N N 464 THR HG1 H N N 465 THR HG21 H N N 466 THR HG22 H N N 467 THR HG23 H N N 468 THR HXT H N N 469 TYR N N N N 470 TYR CA C N S 471 TYR C C N N 472 TYR O O N N 473 TYR CB C N N 474 TYR CG C Y N 475 TYR CD1 C Y N 476 TYR CD2 C Y N 477 TYR CE1 C Y N 478 TYR CE2 C Y N 479 TYR CZ C Y N 480 TYR OH O N N 481 TYR OXT O N N 482 TYR H H N N 483 TYR H2 H N N 484 TYR HA H N N 485 TYR HB2 H N N 486 TYR HB3 H N N 487 TYR HD1 H N N 488 TYR HD2 H N N 489 TYR HE1 H N N 490 TYR HE2 H N N 491 TYR HH H N N 492 TYR HXT H N N 493 VAL N N N N 494 VAL CA C N S 495 VAL C C N N 496 VAL O O N N 497 VAL CB C N N 498 VAL CG1 C N N 499 VAL CG2 C N N 500 VAL OXT O N N 501 VAL H H N N 502 VAL H2 H N N 503 VAL HA H N N 504 VAL HB H N N 505 VAL HG11 H N N 506 VAL HG12 H N N 507 VAL HG13 H N N 508 VAL HG21 H N N 509 VAL HG22 H N N 510 VAL HG23 H N N 511 VAL HXT H N N 512 ZN ZN ZN N N 513 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PO4 P O1 doub N N 409 PO4 P O2 sing N N 410 PO4 P O3 sing N N 411 PO4 P O4 sing N N 412 PRO N CA sing N N 413 PRO N CD sing N N 414 PRO N H sing N N 415 PRO CA C sing N N 416 PRO CA CB sing N N 417 PRO CA HA sing N N 418 PRO C O doub N N 419 PRO C OXT sing N N 420 PRO CB CG sing N N 421 PRO CB HB2 sing N N 422 PRO CB HB3 sing N N 423 PRO CG CD sing N N 424 PRO CG HG2 sing N N 425 PRO CG HG3 sing N N 426 PRO CD HD2 sing N N 427 PRO CD HD3 sing N N 428 PRO OXT HXT sing N N 429 SER N CA sing N N 430 SER N H sing N N 431 SER N H2 sing N N 432 SER CA C sing N N 433 SER CA CB sing N N 434 SER CA HA sing N N 435 SER C O doub N N 436 SER C OXT sing N N 437 SER CB OG sing N N 438 SER CB HB2 sing N N 439 SER CB HB3 sing N N 440 SER OG HG sing N N 441 SER OXT HXT sing N N 442 THR N CA sing N N 443 THR N H sing N N 444 THR N H2 sing N N 445 THR CA C sing N N 446 THR CA CB sing N N 447 THR CA HA sing N N 448 THR C O doub N N 449 THR C OXT sing N N 450 THR CB OG1 sing N N 451 THR CB CG2 sing N N 452 THR CB HB sing N N 453 THR OG1 HG1 sing N N 454 THR CG2 HG21 sing N N 455 THR CG2 HG22 sing N N 456 THR CG2 HG23 sing N N 457 THR OXT HXT sing N N 458 TYR N CA sing N N 459 TYR N H sing N N 460 TYR N H2 sing N N 461 TYR CA C sing N N 462 TYR CA CB sing N N 463 TYR CA HA sing N N 464 TYR C O doub N N 465 TYR C OXT sing N N 466 TYR CB CG sing N N 467 TYR CB HB2 sing N N 468 TYR CB HB3 sing N N 469 TYR CG CD1 doub Y N 470 TYR CG CD2 sing Y N 471 TYR CD1 CE1 sing Y N 472 TYR CD1 HD1 sing N N 473 TYR CD2 CE2 doub Y N 474 TYR CD2 HD2 sing N N 475 TYR CE1 CZ doub Y N 476 TYR CE1 HE1 sing N N 477 TYR CE2 CZ sing Y N 478 TYR CE2 HE2 sing N N 479 TYR CZ OH sing N N 480 TYR OH HH sing N N 481 TYR OXT HXT sing N N 482 VAL N CA sing N N 483 VAL N H sing N N 484 VAL N H2 sing N N 485 VAL CA C sing N N 486 VAL CA CB sing N N 487 VAL CA HA sing N N 488 VAL C O doub N N 489 VAL C OXT sing N N 490 VAL CB CG1 sing N N 491 VAL CB CG2 sing N N 492 VAL CB HB sing N N 493 VAL CG1 HG11 sing N N 494 VAL CG1 HG12 sing N N 495 VAL CG1 HG13 sing N N 496 VAL CG2 HG21 sing N N 497 VAL CG2 HG22 sing N N 498 VAL CG2 HG23 sing N N 499 VAL OXT HXT sing N N 500 # _ndb_struct_conf_na.entry_id 8E5D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 14 1_555 -0.335 -0.076 -0.509 -15.880 -20.750 7.408 1 C_DG1:DC14_B C 1 ? B 14 ? 19 1 1 B DT 2 1_555 C DA 13 1_555 -2.053 -0.027 -0.864 -13.754 -18.008 39.184 2 C_DT2:DA13_B C 2 ? B 13 ? ? 1 1 B DA 3 1_555 C DT 12 1_555 0.083 -0.266 -1.403 -16.649 -4.509 4.302 3 C_DA3:DT12_B C 3 ? B 12 ? 20 1 1 B DC 4 1_555 C DG 11 1_555 0.141 -0.154 -0.481 -4.139 -0.693 2.355 4 C_DC4:DG11_B C 4 ? B 11 ? 19 1 1 B DC 5 1_555 C DG 10 1_555 0.151 -0.137 -0.225 -6.228 -1.992 5.853 5 C_DC5:DG10_B C 5 ? B 10 ? 19 1 1 B DG 6 1_555 C DC 9 1_555 -0.189 -0.104 -0.243 6.737 2.575 0.470 6 C_DG6:DC9_B C 6 ? B 9 ? 19 1 1 B DG 7 1_555 C DT 7 1_555 4.911 0.634 0.159 30.770 -2.643 -70.085 7 C_DG7:DT7_B C 7 ? B 7 ? ? 2 1 B DC 9 1_555 C DG 6 1_555 0.151 -0.080 -0.071 -12.280 -5.479 0.221 8 C_DC9:DG6_B C 9 ? B 6 ? 19 1 1 B DG 10 1_555 C DC 5 1_555 -0.211 -0.103 -0.132 -3.195 -5.046 1.288 9 C_DG10:DC5_B C 10 ? B 5 ? 19 1 1 B DT 11 1_555 C DA 4 1_555 -0.104 -0.138 0.010 0.455 -9.593 2.127 10 C_DT11:DA4_B C 11 ? B 4 ? 20 1 1 B DT 12 1_555 C DA 3 1_555 -0.029 -0.162 -0.033 -3.057 -4.094 5.766 11 C_DT12:DA3_B C 12 ? B 3 ? 20 1 1 B DG 13 1_555 C DC 2 1_555 -0.181 -0.122 0.053 -2.011 -4.498 0.290 12 C_DG13:DC2_B C 13 ? B 2 ? 19 1 1 B DC 14 1_555 C DG 1 1_555 0.199 -0.124 0.048 -0.712 -2.769 0.113 13 C_DC14:DG1_B C 14 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 14 1_555 B DT 2 1_555 C DA 13 1_555 0.998 0.408 3.343 -0.919 0.395 21.945 0.915 -2.980 3.306 1.038 2.413 21.967 1 CC_DG1DT2:DA13DC14_BB C 1 ? B 14 ? C 2 ? B 13 ? 1 B DT 2 1_555 C DA 13 1_555 B DA 3 1_555 C DT 12 1_555 -1.998 1.987 3.431 -8.375 5.305 50.613 1.879 1.656 3.870 6.137 9.689 51.512 2 CC_DT2DA3:DT12DA13_BB C 2 ? B 13 ? C 3 ? B 12 ? 1 B DA 3 1_555 C DT 12 1_555 B DC 4 1_555 C DG 11 1_555 0.372 0.342 2.865 -8.794 2.961 33.667 0.181 -1.777 2.705 4.996 14.836 34.887 3 CC_DA3DC4:DG11DT12_BB C 3 ? B 12 ? C 4 ? B 11 ? 1 B DC 4 1_555 C DG 11 1_555 B DC 5 1_555 C DG 10 1_555 -0.207 -0.877 3.275 -3.355 9.991 35.825 -2.655 -0.107 2.941 15.825 5.314 37.294 4 CC_DC4DC5:DG10DG11_BB C 4 ? B 11 ? C 5 ? B 10 ? 1 B DC 5 1_555 C DG 10 1_555 B DG 6 1_555 C DC 9 1_555 -0.012 1.077 3.187 -2.717 9.772 29.793 0.107 -0.502 3.353 18.349 5.102 31.435 5 CC_DC5DG6:DC9DG10_BB C 5 ? B 10 ? C 6 ? B 9 ? 1 B DG 6 1_555 C DC 9 1_555 B DG 7 1_555 C DT 7 1_555 -2.550 0.531 3.008 1.833 0.254 55.937 0.553 2.812 2.932 0.271 -1.954 55.965 6 CC_DG6DG7:DT7DC9_BB C 6 ? B 9 ? C 7 ? B 7 ? 1 B DC 9 1_555 C DG 6 1_555 B DG 10 1_555 C DC 5 1_555 0.283 0.761 3.227 -1.904 7.733 27.540 -0.237 -1.009 3.288 15.829 3.898 28.647 7 CC_DC9DG10:DC5DG6_BB C 9 ? B 6 ? C 10 ? B 5 ? 1 B DG 10 1_555 C DC 5 1_555 B DT 11 1_555 C DA 4 1_555 -0.300 -0.551 3.140 -1.919 5.193 30.878 -1.948 0.213 3.022 9.656 3.569 31.359 8 CC_DG10DT11:DA4DC5_BB C 10 ? B 5 ? C 11 ? B 4 ? 1 B DT 11 1_555 C DA 4 1_555 B DT 12 1_555 C DA 3 1_555 1.266 0.087 3.376 3.930 6.283 36.021 -0.767 -1.442 3.457 10.029 -6.274 36.751 9 CC_DT11DT12:DA3DA4_BB C 11 ? B 4 ? C 12 ? B 3 ? 1 B DT 12 1_555 C DA 3 1_555 B DG 13 1_555 C DC 2 1_555 -1.410 0.898 3.193 -5.303 5.293 37.821 0.690 1.464 3.443 8.069 8.084 38.529 10 CC_DT12DG13:DC2DA3_BB C 12 ? B 3 ? C 13 ? B 2 ? 1 B DG 13 1_555 C DC 2 1_555 B DC 14 1_555 C DG 1 1_555 0.269 -0.202 3.275 0.213 -0.196 38.333 -0.283 -0.383 3.277 -0.299 -0.325 38.334 11 CC_DG13DC14:DG1DC2_BB C 13 ? B 2 ? C 14 ? B 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' P01-CA234228 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM118047 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 'MAGNESIUM ION' MG 6 'PHOSPHATE ION' PO4 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6U08 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #