data_8FI2 # _entry.id 8FI2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FI2 pdb_00008fi2 10.2210/pdb8fi2/pdb WWPDB D_1000270812 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FI2 _pdbx_database_status.recvd_initial_deposition_date 2022-12-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Passalacqua, L.F.M.' 1 0000-0002-5490-2427 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 618 _citation.language ? _citation.page_first 1078 _citation.page_last 1084 _citation.title 'Intricate 3D architecture of a DNA mimic of GFP.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-023-06229-8 _citation.pdbx_database_id_PubMed 37344591 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Passalacqua, L.F.M.' 1 0000-0002-5490-2427 primary 'Banco, M.T.' 2 ? primary 'Moon, J.D.' 3 ? primary 'Li, X.' 4 0000-0003-3149-9783 primary 'Jaffrey, S.R.' 5 0000-0003-3615-6958 primary ;Ferre-D'Amare, A.R. ; 6 0000-0003-4549-1619 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8FI2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.841 _cell.length_a_esd ? _cell.length_b 44.565 _cell.length_b_esd ? _cell.length_c 119.590 _cell.length_c_esd ? _cell.volume 132390.936 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8FI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Lettuce DNA aptamer' 16557.574 1 ? C20T ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' 320.215 1 ? ? ? ? 5 water nat water 18.015 9 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DC)(DT)(DT)(DA)(DG)(DT)(DA)(DG)(DG)(DG)(DA)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DG)(DT) (DA)(DG)(DT)(DG)(DG)(DG)(DC)(DT)(DT)(DC)(DG)(DC)(DA)(DG)(DT)(DT)(DC)(DC)(DT)(DG) (DC)(DG)(DA)(DG)(DG)(DG)(DG)(DA)(DC)(DT)(DA)(DA)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can CTTAGTAGGGATGATGCGGTAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DT n 1 4 DA n 1 5 DG n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DA n 1 12 DT n 1 13 DG n 1 14 DA n 1 15 DT n 1 16 DG n 1 17 DC n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DA n 1 22 DG n 1 23 DT n 1 24 DG n 1 25 DG n 1 26 DG n 1 27 DC n 1 28 DT n 1 29 DT n 1 30 DC n 1 31 DG n 1 32 DC n 1 33 DA n 1 34 DG n 1 35 DT n 1 36 DT n 1 37 DC n 1 38 DC n 1 39 DT n 1 40 DG n 1 41 DC n 1 42 DG n 1 43 DA n 1 44 DG n 1 45 DG n 1 46 DG n 1 47 DG n 1 48 DA n 1 49 DC n 1 50 DT n 1 51 DA n 1 52 DA n 1 53 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 53 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8FI2 _struct_ref.pdbx_db_accession 8FI2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8FI2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 53 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8FI2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 53 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 53 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2ZY non-polymer . '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' ? 'C13 H9 F5 N2 O2' 320.215 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FI2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M Magnesium chloride hexahydrate, 0.1 M HEPES pH 7.5, 30% (v/v) polyethylene glycol monoethyl ether 550' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-06-24 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.105 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.105 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 77.82 _reflns.entry_id 8FI2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 41.76 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3969 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.174 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 393 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.860 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.563 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 60.97 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8FI2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.00 _refine.ls_d_res_low 35.73 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2926 _refine.ls_number_reflns_R_free 248 _refine.ls_number_reflns_R_work 2656 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.14 _refine.ls_percent_reflns_R_free 8.54 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2487 _refine.ls_R_factor_R_free 0.287 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.244 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.47 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8FHV _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.3301 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2361 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 35.73 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1128 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1092 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0039 ? 1322 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.6943 ? 2048 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0307 ? 222 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0044 ? 57 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 33.6480 ? 564 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.00 3.1 . . 120 1269 97.61 . . . . 0.2488 . . . . . . . . . . . 0.3310 'X-RAY DIFFRACTION' 3.78 35.73 . . 128 1387 98.63 . . . . 0.2430 . . . . . . . . . . . 0.2751 # _struct.entry_id 8FI2 _struct.title 'Structure of Lettuce C20T bound to DFHBI-1T' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FI2 _struct_keywords.text 'DNA, aptamer, fluorescence, turn-on, fluorogenic, fluorophore, G-quartet, G-quadruplex' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 101 1_555 ? ? ? ? ? ? ? 2.767 ? ? metalc2 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.942 ? ? metalc3 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.980 ? ? metalc4 metalc ? ? A DT 15 OP2 ? ? ? 1_555 E MG . MG ? ? A DT 15 A MG 104 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc5 metalc ? ? A DG 18 O6 ? ? ? 1_555 B K . K ? ? A DG 18 A K 101 1_555 ? ? ? ? ? ? ? 3.051 ? ? metalc6 metalc ? ? A DG 18 O6 ? ? ? 1_555 C K . K ? ? A DG 18 A K 102 1_555 ? ? ? ? ? ? ? 2.780 ? ? metalc7 metalc ? ? A DG 19 O6 ? ? ? 1_555 B K . K ? ? A DG 19 A K 101 1_555 ? ? ? ? ? ? ? 2.636 ? ? metalc8 metalc ? ? A DT 20 OP2 ? ? ? 1_555 F MG . MG ? ? A DT 20 A MG 105 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc9 metalc ? ? A DG 24 O6 ? ? ? 1_555 B K . K ? ? A DG 24 A K 101 1_555 ? ? ? ? ? ? ? 2.783 ? ? metalc10 metalc ? ? A DG 25 O6 ? ? ? 1_555 B K . K ? ? A DG 25 A K 101 1_555 ? ? ? ? ? ? ? 2.913 ? ? metalc11 metalc ? ? A DG 25 O6 ? ? ? 1_555 C K . K ? ? A DG 25 A K 102 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc12 metalc ? ? A DG 45 O6 ? ? ? 1_555 B K . K ? ? A DG 45 A K 101 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc13 metalc ? ? A DG 45 O6 ? ? ? 1_555 C K . K ? ? A DG 45 A K 102 1_555 ? ? ? ? ? ? ? 2.734 ? ? metalc14 metalc ? ? A DG 46 O6 ? ? ? 1_555 B K . K ? ? A DG 46 A K 101 1_555 ? ? ? ? ? ? ? 3.199 ? ? metalc15 metalc ? ? A DA 52 OP2 ? ? ? 1_555 D MG . MG ? ? A DA 52 A MG 103 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc16 metalc ? ? C K . K ? ? ? 1_555 G 2ZY . O9 ? ? A K 102 A 2ZY 106 1_555 ? ? ? ? ? ? ? 2.702 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 A HOH 204 1_555 ? ? ? ? ? ? ? 2.571 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 A HOH 207 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 201 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 202 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 203 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 208 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 205 1_555 ? ? ? ? ? ? ? 2.767 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 53 N1 ? ? A DC 1 A DG 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 53 O6 ? ? A DC 1 A DG 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 53 N2 ? ? A DC 1 A DG 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 52 N1 ? ? A DT 2 A DA 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 52 N6 ? ? A DT 2 A DA 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 51 N1 ? ? A DT 3 A DA 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 51 N6 ? ? A DT 3 A DA 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 50 N3 ? ? A DA 4 A DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 50 O4 ? ? A DA 4 A DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 49 N3 ? ? A DG 5 A DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 49 O2 ? ? A DG 5 A DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 49 N4 ? ? A DG 5 A DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 48 N1 ? ? A DT 6 A DA 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 48 N6 ? ? A DT 6 A DA 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 B ? ? 1_555 A DT 23 N3 ? ? A DA 7 A DT 23 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog16 hydrog ? ? A DA 7 N6 B ? ? 1_555 A DT 23 O2 ? ? A DA 7 A DT 23 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog17 hydrog ? ? A DA 7 N1 A ? ? 1_555 A DG 47 N1 ? ? A DA 7 A DG 47 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DG 22 N2 ? ? A DG 8 A DG 22 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 24 O6 ? ? A DG 8 A DG 24 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 46 O6 ? ? A DG 8 A DG 46 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 9 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 9 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 9 N7 ? ? ? 1_555 A DG 46 N2 ? ? A DG 9 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DG 46 N1 ? ? A DG 9 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 10 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 10 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 10 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 45 O6 ? ? A DG 10 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 45 N7 ? ? A DG 10 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DC 17 N4 ? ? A DT 12 A DC 17 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog30 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 16 N7 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog31 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 16 O6 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog32 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 26 O6 ? ? A DG 13 A DG 26 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog33 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 29 O4 ? ? A DA 14 A DT 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? A DA 14 N7 ? ? ? 1_555 A DT 29 N3 ? ? A DA 14 A DT 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog35 hydrog ? ? A DT 15 N3 ? ? ? 1_555 A DT 28 O2 ? ? A DT 15 A DT 28 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog36 hydrog ? ? A DT 15 O4 ? ? ? 1_555 A DT 28 N3 ? ? A DT 15 A DT 28 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog37 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DC 27 N3 ? ? A DG 16 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DC 27 O2 ? ? A DG 16 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DC 27 N4 ? ? A DG 16 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 17 N3 ? ? ? 1_555 A DG 26 N1 ? ? A DC 17 A DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 17 N4 ? ? ? 1_555 A DG 26 O6 ? ? A DC 17 A DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 17 O2 ? ? ? 1_555 A DG 26 N2 ? ? A DC 17 A DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 18 N7 ? ? ? 1_555 A DG 25 N2 ? ? A DG 18 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? A DG 18 O6 ? ? ? 1_555 A DG 25 N1 ? ? A DG 18 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DA 21 N1 ? ? A DG 19 A DA 21 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog46 hydrog ? ? A DG 19 N3 ? ? ? 1_555 A DA 21 N6 ? ? A DG 19 A DA 21 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog47 hydrog ? ? A DG 19 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 19 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 19 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? A DT 20 O4 ? ? ? 1_555 A DG 25 N2 ? ? A DT 20 A DG 25 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog50 hydrog ? ? A DG 22 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 22 A DG 24 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog51 hydrog ? ? A DG 24 N1 ? ? ? 1_555 A DG 46 O6 ? ? A DG 24 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? A DG 24 N2 ? ? ? 1_555 A DG 46 N7 ? ? A DG 24 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? A DG 25 N7 ? ? ? 1_555 A DG 45 N2 ? ? A DG 25 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? A DG 25 O6 ? ? ? 1_555 A DG 45 N1 ? ? A DG 25 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? A DG 26 O6 ? ? ? 1_555 A DA 43 N6 ? ? A DG 26 A DA 43 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog56 hydrog ? ? A DG 26 N7 ? ? ? 1_555 A DG 44 N1 ? ? A DG 26 A DG 44 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog57 hydrog ? ? A DC 30 N3 A ? ? 1_555 A DG 42 N1 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A DC 30 N3 B ? ? 1_555 A DG 42 N1 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DC 30 N4 A ? ? 1_555 A DG 42 O6 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DC 30 N4 B ? ? 1_555 A DG 42 O6 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A DC 30 O2 A ? ? 1_555 A DG 42 N2 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A DC 30 O2 B ? ? 1_555 A DG 42 N2 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A DG 31 N1 A ? ? 1_555 A DC 41 N3 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A DG 31 N1 B ? ? 1_555 A DC 41 N3 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A DG 31 N2 A ? ? 1_555 A DC 41 O2 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A DG 31 N2 B ? ? 1_555 A DC 41 O2 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DG 31 O6 A ? ? 1_555 A DC 41 N4 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A DG 31 O6 B ? ? 1_555 A DC 41 N4 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A DC 32 N3 ? ? ? 1_555 A DG 40 N1 ? ? A DC 32 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A DC 32 N4 ? ? ? 1_555 A DG 40 O6 ? ? A DC 32 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A DC 32 O2 ? ? ? 1_555 A DG 40 N2 ? ? A DC 32 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A DA 33 N1 ? ? ? 1_555 A DT 39 N3 ? ? A DA 33 A DT 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A DA 33 N6 ? ? ? 1_555 A DT 39 O4 ? ? A DA 33 A DT 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8FI2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.040256 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022439 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008362 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? F ? ? 8.95735 ? ? ? 7.27484 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DC 17 17 17 DC DC A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DA 21 21 21 DA DA A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DT 23 23 23 DT DT A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DG 25 25 25 DG DG A . n A 1 26 DG 26 26 26 DG DG A . n A 1 27 DC 27 27 27 DC DC A . n A 1 28 DT 28 28 28 DT DT A . n A 1 29 DT 29 29 29 DT DT A . n A 1 30 DC 30 30 30 DC DC A . n A 1 31 DG 31 31 31 DG DG A . n A 1 32 DC 32 32 32 DC DC A . n A 1 33 DA 33 33 33 DA DA A . n A 1 34 DG 34 34 34 DG DG A . n A 1 35 DT 35 35 35 DT DT A . n A 1 36 DT 36 36 36 DT DT A . n A 1 37 DC 37 37 37 DC DC A . n A 1 38 DC 38 38 38 DC DC A . n A 1 39 DT 39 39 39 DT DT A . n A 1 40 DG 40 40 40 DG DG A . n A 1 41 DC 41 41 41 DC DC A . n A 1 42 DG 42 42 42 DG DG A . n A 1 43 DA 43 43 43 DA DA A . n A 1 44 DG 44 44 44 DG DG A . n A 1 45 DG 45 45 45 DG DG A . n A 1 46 DG 46 46 46 DG DG A . n A 1 47 DG 47 47 47 DG DG A . n A 1 48 DA 48 48 48 DA DA A . n A 1 49 DC 49 49 49 DC DC A . n A 1 50 DT 50 50 50 DT DT A . n A 1 51 DA 51 51 51 DA DA A . n A 1 52 DA 52 52 52 DA DA A . n A 1 53 DG 53 53 53 DG DG A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email adrian.ferre@nih.gov _pdbx_contact_author.name_first 'Adrian R.' _pdbx_contact_author.name_last "Ferre-D'Amare" _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4549-1619 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 2 K 1 102 2 K K A . D 3 MG 1 103 1 MG MG A . E 3 MG 1 104 2 MG MG A . F 3 MG 1 105 3 MG MG A . G 4 2ZY 1 106 1 2ZY LIG A . H 5 HOH 1 201 2 HOH HOH A . H 5 HOH 2 202 3 HOH HOH A . H 5 HOH 3 203 4 HOH HOH A . H 5 HOH 4 204 1 HOH HOH A . H 5 HOH 5 205 7 HOH HOH A . H 5 HOH 6 206 8 HOH HOH A . H 5 HOH 7 207 6 HOH HOH A . H 5 HOH 8 208 5 HOH HOH A . H 5 HOH 9 209 9 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 70.5 ? 2 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 119.8 ? 3 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 66.1 ? 4 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 79.5 ? 5 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 92.3 ? 6 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 63.3 ? 7 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 116.3 ? 8 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 170.1 ? 9 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 104.1 ? 10 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 82.3 ? 11 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 169.1 ? 12 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 104.2 ? 13 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 64.0 ? 14 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 110.6 ? 15 O6 ? A DG 24 ? A DG 24 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 70.3 ? 16 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 99.1 ? 17 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 64.1 ? 18 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 97.3 ? 19 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 154.9 ? 20 O6 ? A DG 24 ? A DG 24 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 119.6 ? 21 O6 ? A DG 25 ? A DG 25 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 70.1 ? 22 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 65.5 ? 23 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 120.8 ? 24 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 173.1 ? 25 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 115.4 ? 26 O6 ? A DG 24 ? A DG 24 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 69.1 ? 27 O6 ? A DG 25 ? A DG 25 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 111.6 ? 28 O6 ? A DG 45 ? A DG 45 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 85.7 ? 29 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 69.0 ? 30 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 104.1 ? 31 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 67.9 ? 32 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 63.6 ? 33 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 104.1 ? 34 O6 ? A DG 25 ? A DG 25 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 70.6 ? 35 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O9 ? G 2ZY . ? A 2ZY 106 ? 1_555 106.7 ? 36 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O9 ? G 2ZY . ? A 2ZY 106 ? 1_555 73.1 ? 37 O6 ? A DG 25 ? A DG 25 ? 1_555 K ? C K . ? A K 102 ? 1_555 O9 ? G 2ZY . ? A 2ZY 106 ? 1_555 116.0 ? 38 O6 ? A DG 45 ? A DG 45 ? 1_555 K ? C K . ? A K 102 ? 1_555 O9 ? G 2ZY . ? A 2ZY 106 ? 1_555 170.0 ? 39 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 201 ? 1_555 139.3 ? 40 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 83.8 ? 41 O ? H HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 118.2 ? 42 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 77.7 ? 43 O ? H HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 66.9 ? 44 O ? H HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 150.5 ? 45 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 107.6 ? 46 O ? H HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 87.3 ? 47 O ? H HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 126.2 ? 48 O ? H HOH . ? A HOH 203 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 81.7 ? 49 OP2 ? A DT 20 ? A DT 20 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 205 ? 1_555 135.6 ? 50 OP2 ? A DA 52 ? A DA 52 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? H HOH . ? A HOH 204 ? 1_555 62.8 ? 51 OP2 ? A DA 52 ? A DA 52 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? H HOH . ? A HOH 207 ? 1_555 87.8 ? 52 O ? H HOH . ? A HOH 204 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? H HOH . ? A HOH 207 ? 1_555 145.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-10 2 'Structure model' 1 1 2023-07-05 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -18.3910168448 _pdbx_refine_tls.origin_y -41.5220983096 _pdbx_refine_tls.origin_z -102.94850999 _pdbx_refine_tls.T[1][1] 0.331193979111 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.043672689525 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0903420817655 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.617717723229 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.00138111945671 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.278130285681 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.67636193471 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.363111445241 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.386643693454 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 3.88225583242 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 3.23201237063 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 8.54763267163 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0757019237838 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.305130133927 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0496761891499 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.400670239387 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.393314266384 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.00844212610912 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.210704013639 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.403739839918 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.411454519226 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id H _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id L _pdbx_refine_tls_group.end_auth_seq_id 1 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.5 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 8FI2 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 13 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 111.05 108.30 2.75 0.30 N 2 1 "O4'" A DG 46 ? ? "C1'" A DG 46 ? ? N9 A DG 46 ? ? 110.85 108.30 2.55 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 38 ? N1 ? A DC 38 N1 2 1 Y 1 A DC 38 ? C2 ? A DC 38 C2 3 1 Y 1 A DC 38 ? O2 ? A DC 38 O2 4 1 Y 1 A DC 38 ? N3 ? A DC 38 N3 5 1 Y 1 A DC 38 ? C4 ? A DC 38 C4 6 1 Y 1 A DC 38 ? N4 ? A DC 38 N4 7 1 Y 1 A DC 38 ? C5 ? A DC 38 C5 8 1 Y 1 A DC 38 ? C6 ? A DC 38 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2ZY O18 O N N 1 2ZY C15 C N N 2 2ZY N14 N N N 3 2ZY C16 C N N 4 2ZY C19 C N N 5 2ZY C13 C N N 6 2ZY C17 C N N 7 2ZY C11 C N N 8 2ZY N12 N N N 9 2ZY C10 C N N 10 2ZY C2 C Y N 11 2ZY C1 C Y N 12 2ZY C6 C Y N 13 2ZY F8 F N N 14 2ZY C5 C Y N 15 2ZY O9 O N N 16 2ZY C4 C Y N 17 2ZY F7 F N N 18 2ZY C3 C Y N 19 2ZY F20 F N N 20 2ZY F21 F N N 21 2ZY F22 F N N 22 2ZY H1 H N N 23 2ZY H2 H N N 24 2ZY H4 H N N 25 2ZY H5 H N N 26 2ZY H6 H N N 27 2ZY H7 H N N 28 2ZY H9 H N N 29 2ZY H10 H N N 30 2ZY H11 H N N 31 DA OP3 O N N 32 DA P P N N 33 DA OP1 O N N 34 DA OP2 O N N 35 DA "O5'" O N N 36 DA "C5'" C N N 37 DA "C4'" C N R 38 DA "O4'" O N N 39 DA "C3'" C N S 40 DA "O3'" O N N 41 DA "C2'" C N N 42 DA "C1'" C N R 43 DA N9 N Y N 44 DA C8 C Y N 45 DA N7 N Y N 46 DA C5 C Y N 47 DA C6 C Y N 48 DA N6 N N N 49 DA N1 N Y N 50 DA C2 C Y N 51 DA N3 N Y N 52 DA C4 C Y N 53 DA HOP3 H N N 54 DA HOP2 H N N 55 DA "H5'" H N N 56 DA "H5''" H N N 57 DA "H4'" H N N 58 DA "H3'" H N N 59 DA "HO3'" H N N 60 DA "H2'" H N N 61 DA "H2''" H N N 62 DA "H1'" H N N 63 DA H8 H N N 64 DA H61 H N N 65 DA H62 H N N 66 DA H2 H N N 67 DC OP3 O N N 68 DC P P N N 69 DC OP1 O N N 70 DC OP2 O N N 71 DC "O5'" O N N 72 DC "C5'" C N N 73 DC "C4'" C N R 74 DC "O4'" O N N 75 DC "C3'" C N S 76 DC "O3'" O N N 77 DC "C2'" C N N 78 DC "C1'" C N R 79 DC N1 N N N 80 DC C2 C N N 81 DC O2 O N N 82 DC N3 N N N 83 DC C4 C N N 84 DC N4 N N N 85 DC C5 C N N 86 DC C6 C N N 87 DC HOP3 H N N 88 DC HOP2 H N N 89 DC "H5'" H N N 90 DC "H5''" H N N 91 DC "H4'" H N N 92 DC "H3'" H N N 93 DC "HO3'" H N N 94 DC "H2'" H N N 95 DC "H2''" H N N 96 DC "H1'" H N N 97 DC H41 H N N 98 DC H42 H N N 99 DC H5 H N N 100 DC H6 H N N 101 DG OP3 O N N 102 DG P P N N 103 DG OP1 O N N 104 DG OP2 O N N 105 DG "O5'" O N N 106 DG "C5'" C N N 107 DG "C4'" C N R 108 DG "O4'" O N N 109 DG "C3'" C N S 110 DG "O3'" O N N 111 DG "C2'" C N N 112 DG "C1'" C N R 113 DG N9 N Y N 114 DG C8 C Y N 115 DG N7 N Y N 116 DG C5 C Y N 117 DG C6 C N N 118 DG O6 O N N 119 DG N1 N N N 120 DG C2 C N N 121 DG N2 N N N 122 DG N3 N N N 123 DG C4 C Y N 124 DG HOP3 H N N 125 DG HOP2 H N N 126 DG "H5'" H N N 127 DG "H5''" H N N 128 DG "H4'" H N N 129 DG "H3'" H N N 130 DG "HO3'" H N N 131 DG "H2'" H N N 132 DG "H2''" H N N 133 DG "H1'" H N N 134 DG H8 H N N 135 DG H1 H N N 136 DG H21 H N N 137 DG H22 H N N 138 DT OP3 O N N 139 DT P P N N 140 DT OP1 O N N 141 DT OP2 O N N 142 DT "O5'" O N N 143 DT "C5'" C N N 144 DT "C4'" C N R 145 DT "O4'" O N N 146 DT "C3'" C N S 147 DT "O3'" O N N 148 DT "C2'" C N N 149 DT "C1'" C N R 150 DT N1 N N N 151 DT C2 C N N 152 DT O2 O N N 153 DT N3 N N N 154 DT C4 C N N 155 DT O4 O N N 156 DT C5 C N N 157 DT C7 C N N 158 DT C6 C N N 159 DT HOP3 H N N 160 DT HOP2 H N N 161 DT "H5'" H N N 162 DT "H5''" H N N 163 DT "H4'" H N N 164 DT "H3'" H N N 165 DT "HO3'" H N N 166 DT "H2'" H N N 167 DT "H2''" H N N 168 DT "H1'" H N N 169 DT H3 H N N 170 DT H71 H N N 171 DT H72 H N N 172 DT H73 H N N 173 DT H6 H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 K K K N N 178 MG MG MG N N 179 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2ZY F20 C19 sing N N 1 2ZY F22 C19 sing N N 2 2ZY C19 F21 sing N N 3 2ZY C19 C16 sing N N 4 2ZY C16 N14 sing N N 5 2ZY O18 C15 doub N N 6 2ZY C15 N14 sing N N 7 2ZY C15 C11 sing N N 8 2ZY N14 C13 sing N N 9 2ZY C10 C11 doub N Z 10 2ZY C10 C2 sing N N 11 2ZY C11 N12 sing N N 12 2ZY C13 C17 sing N N 13 2ZY C13 N12 doub N N 14 2ZY C1 C2 doub Y N 15 2ZY C1 C6 sing Y N 16 2ZY C2 C3 sing Y N 17 2ZY F8 C6 sing N N 18 2ZY C6 C5 doub Y N 19 2ZY C3 C4 doub Y N 20 2ZY C5 C4 sing Y N 21 2ZY C5 O9 sing N N 22 2ZY C4 F7 sing N N 23 2ZY C16 H1 sing N N 24 2ZY C16 H2 sing N N 25 2ZY C17 H4 sing N N 26 2ZY C17 H5 sing N N 27 2ZY C17 H6 sing N N 28 2ZY C10 H7 sing N N 29 2ZY C1 H9 sing N N 30 2ZY O9 H10 sing N N 31 2ZY C3 H11 sing N N 32 DA OP3 P sing N N 33 DA OP3 HOP3 sing N N 34 DA P OP1 doub N N 35 DA P OP2 sing N N 36 DA P "O5'" sing N N 37 DA OP2 HOP2 sing N N 38 DA "O5'" "C5'" sing N N 39 DA "C5'" "C4'" sing N N 40 DA "C5'" "H5'" sing N N 41 DA "C5'" "H5''" sing N N 42 DA "C4'" "O4'" sing N N 43 DA "C4'" "C3'" sing N N 44 DA "C4'" "H4'" sing N N 45 DA "O4'" "C1'" sing N N 46 DA "C3'" "O3'" sing N N 47 DA "C3'" "C2'" sing N N 48 DA "C3'" "H3'" sing N N 49 DA "O3'" "HO3'" sing N N 50 DA "C2'" "C1'" sing N N 51 DA "C2'" "H2'" sing N N 52 DA "C2'" "H2''" sing N N 53 DA "C1'" N9 sing N N 54 DA "C1'" "H1'" sing N N 55 DA N9 C8 sing Y N 56 DA N9 C4 sing Y N 57 DA C8 N7 doub Y N 58 DA C8 H8 sing N N 59 DA N7 C5 sing Y N 60 DA C5 C6 sing Y N 61 DA C5 C4 doub Y N 62 DA C6 N6 sing N N 63 DA C6 N1 doub Y N 64 DA N6 H61 sing N N 65 DA N6 H62 sing N N 66 DA N1 C2 sing Y N 67 DA C2 N3 doub Y N 68 DA C2 H2 sing N N 69 DA N3 C4 sing Y N 70 DC OP3 P sing N N 71 DC OP3 HOP3 sing N N 72 DC P OP1 doub N N 73 DC P OP2 sing N N 74 DC P "O5'" sing N N 75 DC OP2 HOP2 sing N N 76 DC "O5'" "C5'" sing N N 77 DC "C5'" "C4'" sing N N 78 DC "C5'" "H5'" sing N N 79 DC "C5'" "H5''" sing N N 80 DC "C4'" "O4'" sing N N 81 DC "C4'" "C3'" sing N N 82 DC "C4'" "H4'" sing N N 83 DC "O4'" "C1'" sing N N 84 DC "C3'" "O3'" sing N N 85 DC "C3'" "C2'" sing N N 86 DC "C3'" "H3'" sing N N 87 DC "O3'" "HO3'" sing N N 88 DC "C2'" "C1'" sing N N 89 DC "C2'" "H2'" sing N N 90 DC "C2'" "H2''" sing N N 91 DC "C1'" N1 sing N N 92 DC "C1'" "H1'" sing N N 93 DC N1 C2 sing N N 94 DC N1 C6 sing N N 95 DC C2 O2 doub N N 96 DC C2 N3 sing N N 97 DC N3 C4 doub N N 98 DC C4 N4 sing N N 99 DC C4 C5 sing N N 100 DC N4 H41 sing N N 101 DC N4 H42 sing N N 102 DC C5 C6 doub N N 103 DC C5 H5 sing N N 104 DC C6 H6 sing N N 105 DG OP3 P sing N N 106 DG OP3 HOP3 sing N N 107 DG P OP1 doub N N 108 DG P OP2 sing N N 109 DG P "O5'" sing N N 110 DG OP2 HOP2 sing N N 111 DG "O5'" "C5'" sing N N 112 DG "C5'" "C4'" sing N N 113 DG "C5'" "H5'" sing N N 114 DG "C5'" "H5''" sing N N 115 DG "C4'" "O4'" sing N N 116 DG "C4'" "C3'" sing N N 117 DG "C4'" "H4'" sing N N 118 DG "O4'" "C1'" sing N N 119 DG "C3'" "O3'" sing N N 120 DG "C3'" "C2'" sing N N 121 DG "C3'" "H3'" sing N N 122 DG "O3'" "HO3'" sing N N 123 DG "C2'" "C1'" sing N N 124 DG "C2'" "H2'" sing N N 125 DG "C2'" "H2''" sing N N 126 DG "C1'" N9 sing N N 127 DG "C1'" "H1'" sing N N 128 DG N9 C8 sing Y N 129 DG N9 C4 sing Y N 130 DG C8 N7 doub Y N 131 DG C8 H8 sing N N 132 DG N7 C5 sing Y N 133 DG C5 C6 sing N N 134 DG C5 C4 doub Y N 135 DG C6 O6 doub N N 136 DG C6 N1 sing N N 137 DG N1 C2 sing N N 138 DG N1 H1 sing N N 139 DG C2 N2 sing N N 140 DG C2 N3 doub N N 141 DG N2 H21 sing N N 142 DG N2 H22 sing N N 143 DG N3 C4 sing N N 144 DT OP3 P sing N N 145 DT OP3 HOP3 sing N N 146 DT P OP1 doub N N 147 DT P OP2 sing N N 148 DT P "O5'" sing N N 149 DT OP2 HOP2 sing N N 150 DT "O5'" "C5'" sing N N 151 DT "C5'" "C4'" sing N N 152 DT "C5'" "H5'" sing N N 153 DT "C5'" "H5''" sing N N 154 DT "C4'" "O4'" sing N N 155 DT "C4'" "C3'" sing N N 156 DT "C4'" "H4'" sing N N 157 DT "O4'" "C1'" sing N N 158 DT "C3'" "O3'" sing N N 159 DT "C3'" "C2'" sing N N 160 DT "C3'" "H3'" sing N N 161 DT "O3'" "HO3'" sing N N 162 DT "C2'" "C1'" sing N N 163 DT "C2'" "H2'" sing N N 164 DT "C2'" "H2''" sing N N 165 DT "C1'" N1 sing N N 166 DT "C1'" "H1'" sing N N 167 DT N1 C2 sing N N 168 DT N1 C6 sing N N 169 DT C2 O2 doub N N 170 DT C2 N3 sing N N 171 DT N3 C4 sing N N 172 DT N3 H3 sing N N 173 DT C4 O4 doub N N 174 DT C4 C5 sing N N 175 DT C5 C7 sing N N 176 DT C5 C6 doub N N 177 DT C7 H71 sing N N 178 DT C7 H72 sing N N 179 DT C7 H73 sing N N 180 DT C6 H6 sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8FI2 'double helix' 8FI2 'b-form double helix' 8FI2 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 53 1_555 0.165 -0.187 0.588 0.935 -3.679 -1.533 1 A_DC1:DG53_A A 1 ? A 53 ? 19 1 1 A DT 2 1_555 A DA 52 1_555 -0.098 -0.111 0.102 -2.459 -5.049 2.656 2 A_DT2:DA52_A A 2 ? A 52 ? 20 1 1 A DT 3 1_555 A DA 51 1_555 -0.116 -0.133 0.212 -0.636 -2.657 2.047 3 A_DT3:DA51_A A 3 ? A 51 ? 20 1 1 A DA 4 1_555 A DT 50 1_555 0.061 -0.137 0.013 2.031 -6.676 2.114 4 A_DA4:DT50_A A 4 ? A 50 ? 20 1 1 A DG 5 1_555 A DC 49 1_555 -0.185 -0.115 -0.055 1.544 -11.866 1.883 5 A_DG5:DC49_A A 5 ? A 49 ? 19 1 1 A DT 6 1_555 A DA 48 1_555 -0.073 -0.157 -0.304 -3.166 -14.693 0.896 6 A_DT6:DA48_A A 6 ? A 48 ? 20 1 1 A DA 7 1_555 A DG 47 1_555 1.720 1.430 0.142 -14.681 -15.905 4.110 7 A_DA7:DG47_A A 7 ? A 47 ? ? 1 1 A DG 8 1_555 A DG 22 1_555 -4.135 1.212 -0.067 -10.930 -21.733 -67.499 8 A_DG8:DG22_A A 8 ? A 22 ? ? 2 1 A DG 19 1_555 A DA 21 1_555 3.572 -3.805 0.380 -26.244 -2.402 -59.632 9 A_DG19:DA21_A A 19 ? A 21 ? 10 6 1 A DG 25 1_555 A DG 45 1_555 -1.591 -3.471 -0.178 7.736 9.603 93.171 10 A_DG25:DG45_A A 25 ? A 45 ? 6 3 1 A DG 26 1_555 A DC 17 1_555 -0.226 -0.113 0.053 -12.747 10.006 4.483 11 A_DG26:DC17_A A 26 ? A 17 ? 19 1 1 A DC 27 1_555 A DG 16 1_555 0.213 -0.133 -0.106 3.618 8.018 0.723 12 A_DC27:DG16_A A 27 ? A 16 ? 19 1 1 A DT 28 1_555 A DT 15 1_555 2.358 -1.990 -0.086 14.275 -11.093 6.518 13 A_DT28:DT15_A A 28 ? A 15 ? 16 1 1 A DT 29 1_555 A DA 14 1_555 -0.368 3.434 0.204 -5.129 -10.974 -67.511 14 A_DT29:DA14_A A 29 ? A 14 ? 23 3 1 A DC 30 1_555 A DG 42 1_555 0.162 -0.147 0.110 -4.414 -10.528 1.410 15 A_DC30:DG42_A A 30 ? A 42 ? 19 1 1 A DG 31 1_555 A DC 41 1_555 -0.147 -0.149 0.531 -1.325 -6.405 -2.768 16 A_DG31:DC41_A A 31 ? A 41 ? 19 1 1 A DC 32 1_555 A DG 40 1_555 0.177 -0.202 0.480 -1.887 -6.212 -0.599 17 A_DC32:DG40_A A 32 ? A 40 ? 19 1 1 A DA 33 1_555 A DT 39 1_555 0.073 -0.081 -0.304 2.731 -9.900 0.196 18 A_DA33:DT39_A A 33 ? A 39 ? 20 1 1 A DG 9 1_555 A DG 46 1_555 -1.595 -3.473 -0.437 0.028 1.002 89.844 19 A_DG9:DG46_A A 9 ? A 46 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 53 1_555 A DT 2 1_555 A DA 52 1_555 -0.004 -1.127 3.280 3.227 -0.299 29.733 -2.122 0.680 3.272 -0.581 -6.265 29.905 1 AA_DC1DT2:DA52DG53_AA A 1 ? A 53 ? A 2 ? A 52 ? 1 A DT 2 1_555 A DA 52 1_555 A DT 3 1_555 A DA 51 1_555 -0.404 -0.769 3.299 -1.786 3.020 30.942 -2.010 0.411 3.229 5.638 3.334 31.135 2 AA_DT2DT3:DA51DA52_AA A 2 ? A 52 ? A 3 ? A 51 ? 1 A DT 3 1_555 A DA 51 1_555 A DA 4 1_555 A DT 50 1_555 -0.205 0.290 3.209 -1.898 5.018 37.470 -0.190 0.074 3.226 7.762 2.936 37.839 3 AA_DT3DA4:DT50DA51_AA A 3 ? A 51 ? A 4 ? A 50 ? 1 A DA 4 1_555 A DT 50 1_555 A DG 5 1_555 A DC 49 1_555 -0.086 -0.429 3.366 0.559 0.106 33.465 -0.762 0.245 3.362 0.185 -0.971 33.470 4 AA_DA4DG5:DC49DT50_AA A 4 ? A 50 ? A 5 ? A 49 ? 1 A DG 5 1_555 A DC 49 1_555 A DT 6 1_555 A DA 48 1_555 0.016 -0.957 3.333 3.246 -2.167 36.132 -1.224 0.439 3.372 -3.482 -5.214 36.336 5 AA_DG5DT6:DA48DC49_AA A 5 ? A 49 ? A 6 ? A 48 ? 1 A DT 6 1_555 A DA 48 1_555 A DA 7 1_555 A DG 47 1_555 0.540 -0.146 3.690 1.730 0.896 45.479 -0.278 -0.526 3.704 1.158 -2.237 45.518 6 AA_DT6DA7:DG47DA48_AA A 6 ? A 48 ? A 7 ? A 47 ? 1 A DA 7 1_555 A DG 47 1_555 A DG 8 1_555 A DG 22 1_555 4.277 0.235 3.436 -11.545 10.954 79.231 -0.098 -3.603 2.904 8.511 8.970 80.555 7 AA_DA7DG8:DG22DG47_AA A 7 ? A 47 ? A 8 ? A 22 ? 1 A DG 8 1_555 A DG 22 1_555 A DG 19 1_555 A DA 21 1_555 -2.589 1.705 -1.355 108.832 140.783 45.859 1.403 0.869 -0.744 70.888 -54.799 178.107 8 AA_DG8DG19:DA21DG22_AA A 8 ? A 22 ? A 19 ? A 21 ? 1 A DG 19 1_555 A DA 21 1_555 A DG 25 1_555 A DG 45 1_555 -0.161 -2.333 5.086 140.144 -20.131 39.745 -0.864 2.614 1.979 -11.836 -82.400 143.952 9 AA_DG19DG25:DG45DA21_AA A 19 ? A 21 ? A 25 ? A 45 ? 1 A DG 26 1_555 A DC 17 1_555 A DC 27 1_555 A DG 16 1_555 -1.232 -0.191 2.930 -0.021 4.053 27.460 -1.270 2.563 2.874 8.478 0.045 27.752 10 AA_DG26DC27:DG16DC17_AA A 26 ? A 17 ? A 27 ? A 16 ? 1 A DC 27 1_555 A DG 16 1_555 A DT 28 1_555 A DT 15 1_555 0.874 0.470 2.923 1.338 6.821 40.949 0.003 -1.103 2.986 9.666 -1.896 41.510 11 AA_DC27DT28:DT15DG16_AA A 27 ? A 16 ? A 28 ? A 15 ? 1 A DT 28 1_555 A DT 15 1_555 A DT 29 1_555 A DA 14 1_555 0.956 -3.415 3.502 5.825 1.121 69.887 -3.016 -0.611 3.514 0.977 -5.075 70.106 12 AA_DT28DT29:DA14DT15_AA A 28 ? A 15 ? A 29 ? A 14 ? 1 A DT 29 1_555 A DA 14 1_555 A DC 30 1_555 A DG 42 1_555 -0.471 1.782 3.456 -2.353 -3.072 7.869 18.963 -2.520 2.605 -20.808 15.940 8.767 13 AA_DT29DC30:DG42DA14_AA A 29 ? A 14 ? A 30 ? A 42 ? 1 A DC 30 1_555 A DG 42 1_555 A DG 31 1_555 A DC 41 1_555 0.013 -0.270 3.150 -0.159 1.422 33.648 -0.688 -0.047 3.136 2.454 0.275 33.677 14 AA_DC30DG31:DC41DG42_AA A 30 ? A 42 ? A 31 ? A 41 ? 1 A DG 31 1_555 A DC 41 1_555 A DC 32 1_555 A DG 40 1_555 0.506 0.404 3.580 5.461 4.157 34.780 -0.016 0.062 3.638 6.871 -9.027 35.431 15 AA_DG31DC32:DG40DC41_AA A 31 ? A 41 ? A 32 ? A 40 ? 1 A DC 32 1_555 A DG 40 1_555 A DA 33 1_555 A DT 39 1_555 -0.225 1.263 3.264 1.054 2.616 40.424 1.529 0.444 3.329 3.781 -1.523 40.518 16 AA_DC32DA33:DT39DG40_AA A 32 ? A 40 ? A 33 ? A 39 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 2ZY _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 2ZY _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'MAGNESIUM ION' MG 4 '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' 2ZY 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8FHV _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #