data_8U51 # _entry.id 8U51 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8U51 pdb_00008u51 10.2210/pdb8u51/pdb WWPDB D_1000276675 ? ? EMDB EMD-41906 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-04-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8U51 _pdbx_database_status.recvd_initial_deposition_date 2023-09-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Klebsiella pneumoniae SUMO-loaded encapsulin shell' _pdbx_database_related.db_id EMD-41906 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email tgiessen@umich.edu _pdbx_contact_author.name_first Tobias _pdbx_contact_author.name_last Giessen _pdbx_contact_author.name_mi W. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6328-2031 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Andreas, M.P.' 1 0000-0001-8871-3053 'Jones, J.A.' 2 0000-0001-8006-5661 'Giessen, T.W.' 3 0000-0001-6328-2031 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 2558 _citation.page_last 2558 _citation.title 'Structural basis for peroxidase encapsulation inside the encapsulin from the Gram-negative pathogen Klebsiella pneumoniae.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-024-46880-x _citation.pdbx_database_id_PubMed 38519509 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jones, J.A.' 1 0000-0001-8006-5661 primary 'Andreas, M.P.' 2 ? primary 'Giessen, T.W.' 3 0000-0001-6328-2031 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Klebsiella pneumoniae family 1 encapsulin shell' 28841.129 1 ? ? ? ? 2 polymer man 'SUMO-targeting peptide fusion protein' 976.108 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MNNLHRELAPVSDAAWEQIEEEASRTLKRFLAARRVVDVSDPQGPAFSAVGTGHVTRLEGPGDSVGAVKRQSQPVVEFRV PFILTRQAIDDVERGSQDSDWSPLKEAARKIAGAEDRAVFDGYAAAGIGGIRPQSSNSPLTLPVAASGYPDVIARALDQL RVAGVNGPYHLVLGENAYTLITSGNEDGYPVLQHIHRLIDGEIVWAPAIEGGVLLSTRGGDFAMDIGQDISIGYLSHTAT HVELYLQESFTFRTLTSEAVVSLLPSED ; ;MNNLHRELAPVSDAAWEQIEEEASRTLKRFLAARRVVDVSDPQGPAFSAVGTGHVTRLEGPGDSVGAVKRQSQPVVEFRV PFILTRQAIDDVERGSQDSDWSPLKEAARKIAGAEDRAVFDGYAAAGIGGIRPQSSNSPLTLPVAASGYPDVIARALDQL RVAGVNGPYHLVLGENAYTLITSGNEDGYPVLQHIHRLIDGEIVWAPAIEGGVLLSTRGGDFAMDIGQDISIGYLSHTAT HVELYLQESFTFRTLTSEAVVSLLPSED ; A ? 2 'polypeptide(L)' no no SGSLNIGSLK SGSLNIGSLK B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ASN n 1 4 LEU n 1 5 HIS n 1 6 ARG n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 PRO n 1 11 VAL n 1 12 SER n 1 13 ASP n 1 14 ALA n 1 15 ALA n 1 16 TRP n 1 17 GLU n 1 18 GLN n 1 19 ILE n 1 20 GLU n 1 21 GLU n 1 22 GLU n 1 23 ALA n 1 24 SER n 1 25 ARG n 1 26 THR n 1 27 LEU n 1 28 LYS n 1 29 ARG n 1 30 PHE n 1 31 LEU n 1 32 ALA n 1 33 ALA n 1 34 ARG n 1 35 ARG n 1 36 VAL n 1 37 VAL n 1 38 ASP n 1 39 VAL n 1 40 SER n 1 41 ASP n 1 42 PRO n 1 43 GLN n 1 44 GLY n 1 45 PRO n 1 46 ALA n 1 47 PHE n 1 48 SER n 1 49 ALA n 1 50 VAL n 1 51 GLY n 1 52 THR n 1 53 GLY n 1 54 HIS n 1 55 VAL n 1 56 THR n 1 57 ARG n 1 58 LEU n 1 59 GLU n 1 60 GLY n 1 61 PRO n 1 62 GLY n 1 63 ASP n 1 64 SER n 1 65 VAL n 1 66 GLY n 1 67 ALA n 1 68 VAL n 1 69 LYS n 1 70 ARG n 1 71 GLN n 1 72 SER n 1 73 GLN n 1 74 PRO n 1 75 VAL n 1 76 VAL n 1 77 GLU n 1 78 PHE n 1 79 ARG n 1 80 VAL n 1 81 PRO n 1 82 PHE n 1 83 ILE n 1 84 LEU n 1 85 THR n 1 86 ARG n 1 87 GLN n 1 88 ALA n 1 89 ILE n 1 90 ASP n 1 91 ASP n 1 92 VAL n 1 93 GLU n 1 94 ARG n 1 95 GLY n 1 96 SER n 1 97 GLN n 1 98 ASP n 1 99 SER n 1 100 ASP n 1 101 TRP n 1 102 SER n 1 103 PRO n 1 104 LEU n 1 105 LYS n 1 106 GLU n 1 107 ALA n 1 108 ALA n 1 109 ARG n 1 110 LYS n 1 111 ILE n 1 112 ALA n 1 113 GLY n 1 114 ALA n 1 115 GLU n 1 116 ASP n 1 117 ARG n 1 118 ALA n 1 119 VAL n 1 120 PHE n 1 121 ASP n 1 122 GLY n 1 123 TYR n 1 124 ALA n 1 125 ALA n 1 126 ALA n 1 127 GLY n 1 128 ILE n 1 129 GLY n 1 130 GLY n 1 131 ILE n 1 132 ARG n 1 133 PRO n 1 134 GLN n 1 135 SER n 1 136 SER n 1 137 ASN n 1 138 SER n 1 139 PRO n 1 140 LEU n 1 141 THR n 1 142 LEU n 1 143 PRO n 1 144 VAL n 1 145 ALA n 1 146 ALA n 1 147 SER n 1 148 GLY n 1 149 TYR n 1 150 PRO n 1 151 ASP n 1 152 VAL n 1 153 ILE n 1 154 ALA n 1 155 ARG n 1 156 ALA n 1 157 LEU n 1 158 ASP n 1 159 GLN n 1 160 LEU n 1 161 ARG n 1 162 VAL n 1 163 ALA n 1 164 GLY n 1 165 VAL n 1 166 ASN n 1 167 GLY n 1 168 PRO n 1 169 TYR n 1 170 HIS n 1 171 LEU n 1 172 VAL n 1 173 LEU n 1 174 GLY n 1 175 GLU n 1 176 ASN n 1 177 ALA n 1 178 TYR n 1 179 THR n 1 180 LEU n 1 181 ILE n 1 182 THR n 1 183 SER n 1 184 GLY n 1 185 ASN n 1 186 GLU n 1 187 ASP n 1 188 GLY n 1 189 TYR n 1 190 PRO n 1 191 VAL n 1 192 LEU n 1 193 GLN n 1 194 HIS n 1 195 ILE n 1 196 HIS n 1 197 ARG n 1 198 LEU n 1 199 ILE n 1 200 ASP n 1 201 GLY n 1 202 GLU n 1 203 ILE n 1 204 VAL n 1 205 TRP n 1 206 ALA n 1 207 PRO n 1 208 ALA n 1 209 ILE n 1 210 GLU n 1 211 GLY n 1 212 GLY n 1 213 VAL n 1 214 LEU n 1 215 LEU n 1 216 SER n 1 217 THR n 1 218 ARG n 1 219 GLY n 1 220 GLY n 1 221 ASP n 1 222 PHE n 1 223 ALA n 1 224 MET n 1 225 ASP n 1 226 ILE n 1 227 GLY n 1 228 GLN n 1 229 ASP n 1 230 ILE n 1 231 SER n 1 232 ILE n 1 233 GLY n 1 234 TYR n 1 235 LEU n 1 236 SER n 1 237 HIS n 1 238 THR n 1 239 ALA n 1 240 THR n 1 241 HIS n 1 242 VAL n 1 243 GLU n 1 244 LEU n 1 245 TYR n 1 246 LEU n 1 247 GLN n 1 248 GLU n 1 249 SER n 1 250 PHE n 1 251 THR n 1 252 PHE n 1 253 ARG n 1 254 THR n 1 255 LEU n 1 256 THR n 1 257 SER n 1 258 GLU n 1 259 ALA n 1 260 VAL n 1 261 VAL n 1 262 SER n 1 263 LEU n 1 264 LEU n 1 265 PRO n 1 266 SER n 1 267 GLU n 1 268 ASP n 2 1 SER n 2 2 GLY n 2 3 SER n 2 4 LEU n 2 5 ASN n 2 6 ILE n 2 7 GLY n 2 8 SER n 2 9 LEU n 2 10 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 268 ? ? GBV82_RS22365 ? ? ? ? ? ? 'Klebsiella pneumoniae' 573 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 10 ? ? GBV82_RS22370 ? ? ? ? ? ? 'Klebsiella pneumoniae' 573 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 TRP 16 16 16 TRP TRP A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 TRP 101 101 101 TRP TRP A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 PRO 168 168 168 PRO PRO A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 HIS 170 170 170 HIS HIS A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 GLU 175 175 175 GLU GLU A . n A 1 176 ASN 176 176 176 ASN ASN A . n A 1 177 ALA 177 177 177 ALA ALA A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 ASN 185 185 185 ASN ASN A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 PRO 190 190 190 PRO PRO A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 GLN 193 193 193 GLN GLN A . n A 1 194 HIS 194 194 194 HIS HIS A . n A 1 195 ILE 195 195 195 ILE ILE A . n A 1 196 HIS 196 196 196 HIS HIS A . n A 1 197 ARG 197 197 197 ARG ARG A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 GLY 201 201 201 GLY GLY A . n A 1 202 GLU 202 202 202 GLU GLU A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 TRP 205 205 205 TRP TRP A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 VAL 213 213 213 VAL VAL A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 THR 217 217 217 THR THR A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 PHE 222 222 222 PHE PHE A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 MET 224 224 224 MET MET A . n A 1 225 ASP 225 225 225 ASP ASP A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 GLN 228 228 228 GLN GLN A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 TYR 234 234 234 TYR TYR A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 HIS 237 237 237 HIS HIS A . n A 1 238 THR 238 238 238 THR THR A . n A 1 239 ALA 239 239 239 ALA ALA A . n A 1 240 THR 240 240 240 THR THR A . n A 1 241 HIS 241 241 241 HIS HIS A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 TYR 245 245 245 TYR TYR A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 GLN 247 247 247 GLN GLN A . n A 1 248 GLU 248 248 248 GLU GLU A . n A 1 249 SER 249 249 249 SER SER A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 THR 254 254 254 THR THR A . n A 1 255 LEU 255 255 255 LEU LEU A . n A 1 256 THR 256 256 256 THR THR A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 GLU 258 258 258 GLU GLU A . n A 1 259 ALA 259 259 259 ALA ALA A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 SER 262 262 262 SER SER A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 LEU 264 264 264 LEU LEU A . n A 1 265 PRO 265 265 265 PRO PRO A . n A 1 266 SER 266 266 266 SER SER A . n A 1 267 GLU 267 267 267 GLU GLU A . n A 1 268 ASP 268 268 ? ? ? A . n B 2 1 SER 1 337 337 SER SER B . n B 2 2 GLY 2 338 338 GLY GLY B . n B 2 3 SER 3 339 339 SER SER B . n B 2 4 LEU 4 340 340 LEU LEU B . n B 2 5 ASN 5 341 341 ASN ASN B . n B 2 6 ILE 6 342 342 ILE ILE B . n B 2 7 GLY 7 343 343 GLY GLY B . n B 2 8 SER 8 344 344 SER SER B . n B 2 9 LEU 9 345 345 LEU LEU B . n B 2 10 LYS 10 346 346 LYS LYS B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8U51 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8U51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8U51 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8U51 _struct.title 'Klebsiella pneumoniae SUMO-loaded encapsulin shell' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8U51 _struct_keywords.text 'Encapsulin, nanocompartment, SUMO, targeting peptide, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8U51 8U51 ? 1 ? 1 2 PDB 8U51 8U51 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8U51 A 1 ? 268 ? 8U51 1 ? 268 ? 1 268 2 2 8U51 B 1 ? 10 ? 8U51 337 ? 346 ? 337 346 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 120-meric 120 2 'icosahedral asymmetric unit' ? dimeric 2 3 'icosahedral pentamer' ? decameric 10 4 'icosahedral 23 hexamer' ? dodecameric 12 5 'icosahedral asymmetric unit, std point frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'electron microscopy' 'not applicable' 2 1 'gel filtration' ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.00000019 0.00000035 1.00000000 -174.72004 -1.00000000 0.00000015 -0.00000019 174.71980 -0.00000015 -1.00000000 0.00000035 174.72018 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000009 0.30901685 -0.80901699 174.71985 0.30901723 0.80901690 0.50000001 -107.98283 0.80901685 -0.50000024 0.30901699 66.73745 3 'point symmetry operation' ? ? -0.30901675 0.80901700 -0.50000014 174.71954 0.80901723 0.49999976 0.30901676 -107.98259 0.49999977 -0.30901737 -0.80901699 282.70320 4 'point symmetry operation' ? ? -0.30901675 0.80901723 0.49999977 -0.00049 0.80901700 0.49999976 -0.30901737 0.00039 -0.50000014 0.30901676 -0.80901699 349.43992 5 'point symmetry operation' ? ? 0.50000009 0.30901723 0.80901685 -107.98311 0.30901685 0.80901690 -0.50000024 66.73730 -0.80901699 0.50000001 0.30901699 174.71973 6 'point symmetry operation' ? ? -1.00000000 0.00000030 0.00000000 349.43953 0.00000030 1.00000000 -0.00000070 0.00007 0.00000000 -0.00000070 -1.00000000 349.44015 7 'point symmetry operation' ? ? -0.50000000 -0.30901661 0.80901714 174.71965 0.30901681 0.80901734 0.49999955 -107.98275 -0.80901706 0.49999967 -0.30901734 282.70277 8 'point symmetry operation' ? ? 0.30901699 -0.80901685 0.50000023 174.71996 0.80901679 0.50000022 0.30901718 -107.98266 -0.50000033 0.30901702 0.80901678 66.73702 9 'point symmetry operation' ? ? 0.30901699 -0.80901708 -0.49999986 349.44003 0.80901726 0.49999978 -0.30901666 0.00021 0.49999958 -0.30901711 0.80901721 0.00023 10 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901700 457.42266 0.30901757 0.80901664 -0.50000021 66.73721 0.80901677 -0.50000057 -0.30901664 174.72037 11 'point symmetry operation' ? ? 1.00000000 -0.00000030 0.00000038 -0.00001 -0.00000030 -1.00000000 0.00000000 349.44048 0.00000038 0.00000000 -1.00000000 349.43996 12 'point symmetry operation' ? ? 0.50000031 0.30901642 -0.80901702 174.71989 -0.30901738 -0.80901699 -0.49999976 457.42326 -0.80901666 0.50000036 -0.30901730 282.70257 13 'point symmetry operation' ? ? -0.30901680 0.80901673 -0.50000054 174.71967 -0.80901714 -0.50000000 -0.30901661 457.42302 -0.49999988 0.30901768 0.80901680 66.73683 14 'point symmetry operation' ? ? -0.30901718 0.80901720 0.49999955 -0.00038 -0.80901691 -0.50000000 0.30901722 349.44010 0.50000002 -0.30901646 0.80901718 0.00004 15 'point symmetry operation' ? ? 0.49999969 0.30901718 0.80901711 -107.98308 -0.30901700 -0.80901699 0.49999999 282.70322 0.80901718 -0.49999989 -0.30901669 174.72018 16 'point symmetry operation' ? ? -1.00000000 0.00000000 -0.00000038 349.43965 0.00000000 -1.00000000 0.00000070 349.44031 -0.00000038 0.00000070 1.00000000 -0.00006 17 'point symmetry operation' ? ? -0.50000040 -0.30901666 0.80901687 174.71978 -0.30901666 -0.80901725 -0.49999979 457.42318 0.80901687 -0.49999979 0.30901765 66.73725 18 'point symmetry operation' ? ? 0.30901656 -0.80901688 0.50000045 174.72000 -0.80901688 -0.49999997 -0.30901733 457.42309 0.50000045 -0.30901733 -0.80901659 282.70300 19 'point symmetry operation' ? ? 0.30901694 -0.80901735 -0.49999946 349.44001 -0.80901735 -0.49999954 0.30901681 349.44017 -0.49999946 0.30901681 -0.80901740 349.43986 20 'point symmetry operation' ? ? -0.49999979 -0.30901742 -0.80901696 457.42270 -0.30901742 -0.80901655 0.50000045 282.70313 -0.80901696 0.50000045 0.30901634 174.71976 21 'point symmetry operation' ? ? 0.00000034 -0.00000016 -1.00000000 349.43977 1.00000000 -0.00000050 0.00000034 0.00045 -0.00000050 -1.00000000 0.00000016 349.44029 22 'point symmetry operation' ? ? -0.80901673 0.50000021 -0.30901735 282.70240 0.50000021 0.30901628 -0.80901714 174.72037 -0.30901735 -0.80901714 -0.49999955 457.42303 23 'point symmetry operation' ? ? -0.50000000 0.30901757 0.80901677 66.73665 -0.30901699 0.80901664 -0.50000057 174.72014 -0.80901700 -0.50000021 -0.30901664 457.42283 24 'point symmetry operation' ? ? 0.49999991 -0.30901657 0.80901721 -0.00014 -0.30901733 0.80901709 0.49999964 0.00007 -0.80901692 -0.50000011 0.30901699 349.43996 25 'point symmetry operation' ? ? 0.80901711 -0.50000003 -0.30901664 174.71999 0.49999966 0.30901699 0.80901720 -107.98263 -0.30901723 -0.80901698 0.49999988 282.70307 26 'point symmetry operation' ? ? -0.00000034 0.00000054 1.00000000 -0.00025 -1.00000000 -0.00000020 -0.00000034 349.44010 0.00000020 -1.00000000 0.00000054 349.44010 27 'point symmetry operation' ? ? 0.80901684 -0.49999991 0.30901754 66.73708 -0.50000043 -0.30901684 0.80901679 174.72025 -0.30901669 -0.80901711 -0.50000000 457.42299 28 'point symmetry operation' ? ? 0.50000031 -0.30901738 -0.80901666 282.70283 0.30901642 -0.80901699 0.50000036 174.72049 -0.80901702 -0.49999976 -0.30901730 457.42287 29 'point symmetry operation' ? ? -0.49999960 0.30901676 -0.80901733 349.43966 0.30901676 -0.80901744 -0.49999943 349.44048 -0.80901733 -0.49999943 0.30901704 349.43990 30 'point symmetry operation' ? ? -0.80901699 0.50000034 0.30901645 174.71955 -0.49999988 -0.30901756 -0.80901685 457.42314 -0.30901719 -0.80901657 0.50000057 282.70288 31 'point symmetry operation' ? ? -0.00000004 0.00000016 1.00000000 -0.00024 1.00000000 0.00000020 0.00000004 0.00038 -0.00000020 1.00000000 -0.00000016 -0.00014 32 'point symmetry operation' ? ? 0.80901688 -0.50000012 0.30901711 66.73719 0.50000019 0.30901699 -0.80901688 174.72021 0.30901700 0.80901692 0.50000012 -107.98301 33 'point symmetry operation' ? ? 0.49999991 -0.30901733 -0.80901692 282.70293 -0.30901657 0.80901709 -0.50000011 174.71991 0.80901721 0.49999964 0.30901699 -107.98281 34 'point symmetry operation' ? ? -0.50000000 0.30901681 -0.80901706 349.43968 -0.30901661 0.80901734 0.49999967 -0.00010 0.80901714 0.49999955 -0.30901734 0.00019 35 'point symmetry operation' ? ? -0.80901696 0.50000012 0.30901688 174.71951 0.50000012 0.30901741 0.80901676 -107.98271 0.30901688 0.80901676 -0.50000045 66.73715 36 'point symmetry operation' ? ? 0.00000004 -0.00000054 -1.00000000 349.43989 -1.00000000 0.00000050 -0.00000004 349.43993 0.00000050 1.00000000 -0.00000054 -0.00020 37 'point symmetry operation' ? ? -0.80901699 0.49999981 -0.30901730 282.70251 -0.49999997 -0.30901643 0.80901723 174.72002 0.30901704 0.80901733 0.49999943 -107.98297 38 'point symmetry operation' ? ? -0.50000021 0.30901714 0.80901681 66.73676 0.30901714 -0.80901674 0.50000033 174.72032 0.80901681 0.50000033 0.30901695 -107.98285 39 'point symmetry operation' ? ? 0.49999969 -0.30901700 0.80901718 -0.00002 0.30901718 -0.80901699 -0.49999989 349.44041 0.80901711 0.49999999 -0.30901669 0.00000 40 'point symmetry operation' ? ? 0.80901684 -0.50000043 -0.30901669 174.72012 -0.49999991 -0.30901684 -0.80901711 457.42306 0.30901754 0.80901679 -0.50000000 66.73695 41 'point symmetry operation' ? ? 0.00000034 1.00000000 -0.00000050 -0.00039 -0.00000016 -0.00000050 -1.00000000 349.44034 -1.00000000 0.00000034 0.00000016 349.43972 42 'point symmetry operation' ? ? 0.30901699 0.80901726 0.49999958 -107.98319 -0.80901708 0.49999978 -0.30901711 282.70292 -0.49999986 -0.30901666 0.80901721 174.71984 43 'point symmetry operation' ? ? 0.80901688 0.50000019 0.30901700 -107.98306 -0.50000012 0.30901699 0.80901692 66.73717 0.30901711 -0.80901688 0.50000012 174.72018 44 'point symmetry operation' ? ? 0.80901714 0.49999988 -0.30901680 -0.00018 0.49999979 -0.30901714 0.80901707 0.00043 0.30901695 -0.80901701 -0.50000000 349.44027 45 'point symmetry operation' ? ? 0.30901743 0.80901676 -0.50000012 66.73678 0.80901676 -0.50000046 -0.30901687 174.72059 -0.50000012 -0.30901687 -0.80901697 457.42288 46 'point symmetry operation' ? ? -0.00000004 1.00000000 -0.00000020 -0.00038 0.00000016 0.00000020 1.00000000 0.00014 1.00000000 0.00000004 -0.00000016 0.00024 47 'point symmetry operation' ? ? 0.30901705 0.80901699 0.49999998 -107.98323 0.80901699 -0.50000003 0.30901696 66.73760 0.49999998 0.30901696 -0.80901702 174.72007 48 'point symmetry operation' ? ? 0.80901714 0.49999979 0.30901695 -107.98303 0.49999988 -0.30901714 -0.80901701 282.70334 -0.30901680 0.80901707 -0.50000000 174.71973 49 'point symmetry operation' ? ? 0.80901711 0.49999966 -0.30901723 -0.00006 -0.50000003 0.30901699 -0.80901698 349.44006 -0.30901664 0.80901720 0.49999988 -0.00031 50 'point symmetry operation' ? ? 0.30901699 0.80901679 -0.50000033 66.73688 -0.80901685 0.50000022 0.30901702 174.71987 0.50000023 0.30901718 0.80901678 -107.98289 51 'point symmetry operation' ? ? 0.00000004 -1.00000000 0.00000050 349.43991 -0.00000054 0.00000050 1.00000000 0.00021 -1.00000000 -0.00000004 -0.00000054 349.43991 52 'point symmetry operation' ? ? -0.30901680 -0.80901714 -0.49999988 457.42278 0.80901673 -0.50000000 0.30901768 66.73751 -0.50000054 -0.30901661 0.80901680 174.72003 53 'point symmetry operation' ? ? -0.80901699 -0.49999988 -0.30901719 457.42265 0.50000034 -0.30901756 -0.80901657 282.70326 0.30901645 -0.80901685 0.50000057 174.72022 54 'point symmetry operation' ? ? -0.80901726 -0.49999957 0.30901699 349.43970 -0.49999957 0.30901658 -0.80901742 349.44013 0.30901699 -0.80901742 -0.49999932 349.44021 55 'point symmetry operation' ? ? -0.30901724 -0.80901664 0.50000042 282.70270 -0.80901711 0.50000024 0.30901631 174.72003 -0.49999967 -0.30901753 -0.80901699 457.42292 56 'point symmetry operation' ? ? -0.00000034 -1.00000000 0.00000020 349.44003 0.00000054 -0.00000020 -1.00000000 349.44017 1.00000000 -0.00000034 0.00000054 0.00018 57 'point symmetry operation' ? ? -0.30901724 -0.80901711 -0.49999967 457.42281 -0.80901664 0.50000024 -0.30901753 282.70283 0.50000042 0.30901631 -0.80901699 174.72010 58 'point symmetry operation' ? ? -0.80901703 -0.50000009 -0.30901676 457.42262 -0.50000009 0.30901771 0.80901666 66.73709 -0.30901676 0.80901666 -0.50000068 174.71992 59 'point symmetry operation' ? ? -0.80901699 -0.49999997 0.30901704 349.43972 0.49999981 -0.30901643 0.80901733 0.00025 -0.30901730 0.80901723 0.49999943 -0.00012 60 'point symmetry operation' ? ? -0.30901718 -0.80901691 0.50000002 282.70281 0.80901720 -0.50000000 -0.30901646 174.72036 0.49999955 0.30901722 0.80901718 -107.98285 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 5 ? ALA A 9 ? HIS A 5 ALA A 9 5 ? 5 HELX_P HELX_P2 AA2 SER A 12 ? LEU A 31 ? SER A 12 LEU A 31 1 ? 20 HELX_P HELX_P3 AA3 ALA A 32 ? VAL A 36 ? ALA A 32 VAL A 36 5 ? 5 HELX_P HELX_P4 AA4 ARG A 86 ? ARG A 94 ? ARG A 86 ARG A 94 1 ? 9 HELX_P HELX_P5 AA5 TRP A 101 ? GLY A 122 ? TRP A 101 GLY A 122 1 ? 22 HELX_P HELX_P6 AA6 ALA A 145 ? SER A 147 ? ALA A 145 SER A 147 5 ? 3 HELX_P HELX_P7 AA7 GLY A 148 ? ALA A 163 ? GLY A 148 ALA A 163 1 ? 16 HELX_P HELX_P8 AA8 GLU A 175 ? SER A 183 ? GLU A 175 SER A 183 1 ? 9 HELX_P HELX_P9 AA9 PRO A 190 ? ILE A 199 ? PRO A 190 ILE A 199 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 38 ? VAL A 39 ? ASP A 38 VAL A 39 AA1 2 PHE A 222 ? HIS A 237 ? PHE A 222 HIS A 237 AA1 3 VAL A 242 ? THR A 254 ? VAL A 242 THR A 254 AA1 4 VAL A 76 ? LEU A 84 ? VAL A 76 LEU A 84 AA2 1 ALA A 49 ? ARG A 57 ? ALA A 49 ARG A 57 AA2 2 VAL A 68 ? PRO A 74 ? VAL A 68 PRO A 74 AA3 1 LEU A 140 ? THR A 141 ? LEU A 140 THR A 141 AA3 2 VAL A 260 ? LEU A 264 ? VAL A 260 LEU A 264 AA3 3 GLY A 212 ? SER A 216 ? GLY A 212 SER A 216 AA3 4 TYR A 169 ? GLY A 174 ? TYR A 169 GLY A 174 AA3 5 VAL A 204 ? ALA A 206 ? VAL A 204 ALA A 206 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASP A 38 ? N ASP A 38 O MET A 224 ? O MET A 224 AA1 2 3 N SER A 236 ? N SER A 236 O GLU A 243 ? O GLU A 243 AA1 3 4 O PHE A 250 ? O PHE A 250 N VAL A 76 ? N VAL A 76 AA2 1 2 N HIS A 54 ? N HIS A 54 O GLN A 71 ? O GLN A 71 AA3 1 2 N LEU A 140 ? N LEU A 140 O LEU A 264 ? O LEU A 264 AA3 2 3 O VAL A 261 ? O VAL A 261 N LEU A 214 ? N LEU A 214 AA3 3 4 O LEU A 215 ? O LEU A 215 N HIS A 170 ? N HIS A 170 AA3 4 5 N LEU A 173 ? N LEU A 173 O VAL A 204 ? O VAL A 204 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 86 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 70.64 _pdbx_validate_torsion.psi -11.12 # _pdbx_point_symmetry.entry_id 8U51 _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8U51 _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details ;Initial fitting was performed using ChimeraX v1.2.5. The model was then manually refined using Coot v9.8.1 followed by real-space refinement using Phenix v1.20.1-4487-000. ; _em_3d_fitting.overall_b_value 93.8 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_reconstruction.entry_id 8U51 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.41 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 101111 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20 mM Tris pH 7.5, 150 mM NaCl' _em_buffer.pH 7.5 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 RECOMBINANT COMPLEX 'Klebsiella pneumoniae SUMO-loaded encapsulin shell' ? ? ? '1, 2' 2 1 RECOMBINANT COMPLEX 'Klebsiella pneumoniae family 1 encapsulin shell' ? ? ? 1 3 2 RECOMBINANT COMPLEX 'SUMO-targeting peptide fusion protein' 'SUMO domain tagged with DyP targeting peptide' ? ? 2 # _em_image_scans.entry_id 8U51 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 3838 _em_image_scans.dimension_width 3710 _em_image_scans.frames_per_image 20 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8U51 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details '60 seconds at 5 mA' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8U51 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ;Blot force: 20 Blot time: 4 seconds ; # _em_experiment.entry_id 8U51 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8U51 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ASP _pdbx_unobs_or_zero_occ_residues.auth_seq_id 268 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ASP _pdbx_unobs_or_zero_occ_residues.label_seq_id 268 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mm C4H12NO3 1 Tris 1 150 mm NaCl 2 'Sodium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 1 2 573 'Klebsiella pneumoniae' ? ? ? ? ? ? ? 2 3 573 'Klebsiella pneumoniae' ? ? ? ? ? ? ? 3 4 573 'Klebsiella pneumoniae' ? ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain ? 1 2 469008 'Escherichia coli BL21(DE3)' ? ? ? 2 3 469008 'Escherichia coli BL21(DE3)' ? ? ? 3 4 469008 'Escherichia coli BL21(DE3)' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 4 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 39.58 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1654 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 115682 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' 'Template Picker' 1 1 ? ? cryoSPARC 4.2.1 'IMAGE ACQUISITION' ? 2 ? ? 1 Leginon ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' 'Patch CTF Estimation' 4 1 ? ? cryoSPARC 4.2.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.2.5 'MODEL FITTING' ? 8 ? 1 ? Coot 0.9.8 OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4.2.1 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4.2.1 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION 'Homogenous refinement' 13 1 ? ? cryoSPARC 4.2.1 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX 1.20.1-4487-000 # _em_specimen.concentration 3.0 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 5R35GM133325-04 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8U51 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_