data_8ZPM # _entry.id 8ZPM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ZPM pdb_00008zpm 10.2210/pdb8zpm/pdb WWPDB D_1300048277 ? ? EMDB EMD-60349 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-02-26 ? 2 'EM metadata' 1 0 2025-02-26 ? 3 'Additional map' 1 0 2025-02-26 1 4 FSC 1 0 2025-02-26 ? 5 'Half map' 1 0 2025-02-26 1 6 'Half map' 1 0 2025-02-26 2 7 Image 1 0 2025-02-26 ? 8 'Primary map' 1 0 2025-02-26 ? 9 'Structure model' 1 1 2025-04-02 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 9 'Structure model' 'Data collection' 2 9 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 9 'Structure model' citation 2 9 'Structure model' citation_author 3 9 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 9 'Structure model' '_citation.country' 2 9 'Structure model' '_citation.journal_abbrev' 3 9 'Structure model' '_citation.journal_id_ASTM' 4 9 'Structure model' '_citation.journal_id_CSD' 5 9 'Structure model' '_citation.journal_id_ISSN' 6 9 'Structure model' '_citation.journal_volume' 7 9 'Structure model' '_citation.page_first' 8 9 'Structure model' '_citation.page_last' 9 9 'Structure model' '_citation.pdbx_database_id_DOI' 10 9 'Structure model' '_citation.pdbx_database_id_PubMed' 11 9 'Structure model' '_citation.title' 12 9 'Structure model' '_citation.year' 13 9 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ZPM _pdbx_database_status.recvd_initial_deposition_date 2024-05-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM strucutre of CXCR4 complexed with antagonist AMD070' _pdbx_database_related.db_id EMD-60349 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email honglihu@cuhk.edu.cn _pdbx_contact_author.name_first Hongli _pdbx_contact_author.name_last Hu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3658-272X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jiao, H.Z.' 1 ? 'Hu, H.L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 122 _citation.language ? _citation.page_first e2425795122 _citation.page_last e2425795122 _citation.title 'Structural mechanisms underlying the modulation of CXCR4 by diverse small-molecule antagonists.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2425795122 _citation.pdbx_database_id_PubMed 40063796 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sang, X.' 1 0009-0002-6561-2254 primary 'Jiao, H.' 2 ? primary 'Meng, Q.' 3 ? primary 'Fang, X.' 4 ? primary 'Pan, Q.' 5 ? primary 'Zhou, J.' 6 ? primary 'Qian, T.' 7 ? primary 'Zhang, W.' 8 ? primary 'Xu, Y.' 9 ? primary 'An, J.' 10 ? primary 'Huang, Z.' 11 ? primary 'Hu, H.' 12 0000-0003-3658-272X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Soluble cytochrome b562,C-X-C chemokine receptor type 4' 55451.062 1 ? ? ? ? 2 polymer man 'Nb6 nanobody' 18665.906 1 ? ? ? ? 3 non-polymer syn '(S)-N1-((1H-Benzo[d]imidazol-2-yl)methyl)-N1-(5,6,7,8-tetrahydroquinolin-8-yl)butane-1,4-diamine' 349.473 1 ? ? ? ? 4 non-polymer syn CHOLESTEROL 386.654 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Cytochrome b-562,CXC-R4,CXCR-4,FB22,Fusin,HM89,LCR1,Leukocyte-derived seven transmembrane domain receptor,LESTR,Lipopolysaccharide-associated protein 3,LAP-3,LPS-associated protein 3,NPYRL,Stromal cell-derived factor 1 receptor,SDF-1 receptor ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MKTIIALSYIFCLVFADYKDDDDKGSADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPD SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLLVPRGSMEGISIYTSDNYTEEMGSGDYD SMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANW YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD RYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISRLKSVRLLSGSREKDRNLRRITRPTVILILAFFACWLP YYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQGPHHHH HHHHHH ; ;MKTIIALSYIFCLVFADYKDDDDKGSADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPD SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLLVPRGSMEGISIYTSDNYTEEMGSGDYD SMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANW YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD RYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISRLKSVRLLSGSREKDRNLRRITRPTVILILAFFACWLP YYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQGPHHHH HHHHHH ; R ? 2 'polypeptide(L)' no no ;MLLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAMAQVQLQESGGGLVQAGESLRLSCAASGTIFRLYDMGWYRRV SGNQRELVASITSGGSTKYGDSVKGRFTISRDNAKNTVYLQMSSLKPEDTAVYYCNAEYRTGIWEELLDGWGQGTQVTVS SHHHHHHHH ; ;MLLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAMAQVQLQESGGGLVQAGESLRLSCAASGTIFRLYDMGWYRRV SGNQRELVASITSGGSTKYGDSVKGRFTISRDNAKNTVYLQMSSLKPEDTAVYYCNAEYRTGIWEELLDGWGQGTQVTVS SHHHHHHHH ; N ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(S)-N1-((1H-Benzo[d]imidazol-2-yl)methyl)-N1-(5,6,7,8-tetrahydroquinolin-8-yl)butane-1,4-diamine' A1D8L 4 CHOLESTEROL CLR # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 THR n 1 4 ILE n 1 5 ILE n 1 6 ALA n 1 7 LEU n 1 8 SER n 1 9 TYR n 1 10 ILE n 1 11 PHE n 1 12 CYS n 1 13 LEU n 1 14 VAL n 1 15 PHE n 1 16 ALA n 1 17 ASP n 1 18 TYR n 1 19 LYS n 1 20 ASP n 1 21 ASP n 1 22 ASP n 1 23 ASP n 1 24 LYS n 1 25 GLY n 1 26 SER n 1 27 ALA n 1 28 ASP n 1 29 LEU n 1 30 GLU n 1 31 ASP n 1 32 ASN n 1 33 TRP n 1 34 GLU n 1 35 THR n 1 36 LEU n 1 37 ASN n 1 38 ASP n 1 39 ASN n 1 40 LEU n 1 41 LYS n 1 42 VAL n 1 43 ILE n 1 44 GLU n 1 45 LYS n 1 46 ALA n 1 47 ASP n 1 48 ASN n 1 49 ALA n 1 50 ALA n 1 51 GLN n 1 52 VAL n 1 53 LYS n 1 54 ASP n 1 55 ALA n 1 56 LEU n 1 57 THR n 1 58 LYS n 1 59 MET n 1 60 ARG n 1 61 ALA n 1 62 ALA n 1 63 ALA n 1 64 LEU n 1 65 ASP n 1 66 ALA n 1 67 GLN n 1 68 LYS n 1 69 ALA n 1 70 THR n 1 71 PRO n 1 72 PRO n 1 73 LYS n 1 74 LEU n 1 75 GLU n 1 76 ASP n 1 77 LYS n 1 78 SER n 1 79 PRO n 1 80 ASP n 1 81 SER n 1 82 PRO n 1 83 GLU n 1 84 MET n 1 85 LYS n 1 86 ASP n 1 87 PHE n 1 88 ARG n 1 89 HIS n 1 90 GLY n 1 91 PHE n 1 92 ASP n 1 93 ILE n 1 94 LEU n 1 95 VAL n 1 96 GLY n 1 97 GLN n 1 98 ILE n 1 99 ASP n 1 100 ASP n 1 101 ALA n 1 102 LEU n 1 103 LYS n 1 104 LEU n 1 105 ALA n 1 106 ASN n 1 107 GLU n 1 108 GLY n 1 109 LYS n 1 110 VAL n 1 111 LYS n 1 112 GLU n 1 113 ALA n 1 114 GLN n 1 115 ALA n 1 116 ALA n 1 117 ALA n 1 118 GLU n 1 119 GLN n 1 120 LEU n 1 121 LYS n 1 122 THR n 1 123 THR n 1 124 ARG n 1 125 ASN n 1 126 ALA n 1 127 TYR n 1 128 ILE n 1 129 GLN n 1 130 LYS n 1 131 TYR n 1 132 LEU n 1 133 LEU n 1 134 VAL n 1 135 PRO n 1 136 ARG n 1 137 GLY n 1 138 SER n 1 139 MET n 1 140 GLU n 1 141 GLY n 1 142 ILE n 1 143 SER n 1 144 ILE n 1 145 TYR n 1 146 THR n 1 147 SER n 1 148 ASP n 1 149 ASN n 1 150 TYR n 1 151 THR n 1 152 GLU n 1 153 GLU n 1 154 MET n 1 155 GLY n 1 156 SER n 1 157 GLY n 1 158 ASP n 1 159 TYR n 1 160 ASP n 1 161 SER n 1 162 MET n 1 163 LYS n 1 164 GLU n 1 165 PRO n 1 166 CYS n 1 167 PHE n 1 168 ARG n 1 169 GLU n 1 170 GLU n 1 171 ASN n 1 172 ALA n 1 173 ASN n 1 174 PHE n 1 175 ASN n 1 176 LYS n 1 177 ILE n 1 178 PHE n 1 179 LEU n 1 180 PRO n 1 181 THR n 1 182 ILE n 1 183 TYR n 1 184 SER n 1 185 ILE n 1 186 ILE n 1 187 PHE n 1 188 LEU n 1 189 THR n 1 190 GLY n 1 191 ILE n 1 192 VAL n 1 193 GLY n 1 194 ASN n 1 195 GLY n 1 196 LEU n 1 197 VAL n 1 198 ILE n 1 199 LEU n 1 200 VAL n 1 201 MET n 1 202 GLY n 1 203 TYR n 1 204 GLN n 1 205 LYS n 1 206 LYS n 1 207 LEU n 1 208 ARG n 1 209 SER n 1 210 MET n 1 211 THR n 1 212 ASP n 1 213 LYS n 1 214 TYR n 1 215 ARG n 1 216 LEU n 1 217 HIS n 1 218 LEU n 1 219 SER n 1 220 VAL n 1 221 ALA n 1 222 ASP n 1 223 LEU n 1 224 LEU n 1 225 PHE n 1 226 VAL n 1 227 ILE n 1 228 THR n 1 229 LEU n 1 230 PRO n 1 231 PHE n 1 232 TRP n 1 233 ALA n 1 234 VAL n 1 235 ASP n 1 236 ALA n 1 237 VAL n 1 238 ALA n 1 239 ASN n 1 240 TRP n 1 241 TYR n 1 242 PHE n 1 243 GLY n 1 244 ASN n 1 245 PHE n 1 246 LEU n 1 247 CYS n 1 248 LYS n 1 249 ALA n 1 250 VAL n 1 251 HIS n 1 252 VAL n 1 253 ILE n 1 254 TYR n 1 255 THR n 1 256 VAL n 1 257 ASN n 1 258 LEU n 1 259 TYR n 1 260 SER n 1 261 SER n 1 262 VAL n 1 263 TRP n 1 264 ILE n 1 265 LEU n 1 266 ALA n 1 267 PHE n 1 268 ILE n 1 269 SER n 1 270 LEU n 1 271 ASP n 1 272 ARG n 1 273 TYR n 1 274 LEU n 1 275 ALA n 1 276 ILE n 1 277 VAL n 1 278 HIS n 1 279 ALA n 1 280 THR n 1 281 ASN n 1 282 SER n 1 283 GLN n 1 284 ARG n 1 285 PRO n 1 286 ARG n 1 287 LYS n 1 288 LEU n 1 289 LEU n 1 290 ALA n 1 291 GLU n 1 292 LYS n 1 293 VAL n 1 294 VAL n 1 295 TYR n 1 296 VAL n 1 297 GLY n 1 298 VAL n 1 299 TRP n 1 300 ILE n 1 301 PRO n 1 302 ALA n 1 303 LEU n 1 304 LEU n 1 305 LEU n 1 306 THR n 1 307 ILE n 1 308 PRO n 1 309 ASP n 1 310 PHE n 1 311 ILE n 1 312 PHE n 1 313 ALA n 1 314 ASN n 1 315 VAL n 1 316 SER n 1 317 GLU n 1 318 ALA n 1 319 ASP n 1 320 ASP n 1 321 ARG n 1 322 TYR n 1 323 ILE n 1 324 CYS n 1 325 ASP n 1 326 ARG n 1 327 PHE n 1 328 TYR n 1 329 PRO n 1 330 ASN n 1 331 ASP n 1 332 LEU n 1 333 TRP n 1 334 VAL n 1 335 VAL n 1 336 VAL n 1 337 PHE n 1 338 GLN n 1 339 PHE n 1 340 GLN n 1 341 HIS n 1 342 ILE n 1 343 MET n 1 344 VAL n 1 345 GLY n 1 346 LEU n 1 347 ILE n 1 348 LEU n 1 349 PRO n 1 350 GLY n 1 351 ILE n 1 352 VAL n 1 353 ILE n 1 354 LEU n 1 355 SER n 1 356 CYS n 1 357 TYR n 1 358 CYS n 1 359 ILE n 1 360 ILE n 1 361 ILE n 1 362 SER n 1 363 ARG n 1 364 LEU n 1 365 LYS n 1 366 SER n 1 367 VAL n 1 368 ARG n 1 369 LEU n 1 370 LEU n 1 371 SER n 1 372 GLY n 1 373 SER n 1 374 ARG n 1 375 GLU n 1 376 LYS n 1 377 ASP n 1 378 ARG n 1 379 ASN n 1 380 LEU n 1 381 ARG n 1 382 ARG n 1 383 ILE n 1 384 THR n 1 385 ARG n 1 386 PRO n 1 387 THR n 1 388 VAL n 1 389 ILE n 1 390 LEU n 1 391 ILE n 1 392 LEU n 1 393 ALA n 1 394 PHE n 1 395 PHE n 1 396 ALA n 1 397 CYS n 1 398 TRP n 1 399 LEU n 1 400 PRO n 1 401 TYR n 1 402 TYR n 1 403 ILE n 1 404 GLY n 1 405 ILE n 1 406 SER n 1 407 ILE n 1 408 ASP n 1 409 SER n 1 410 PHE n 1 411 ILE n 1 412 LEU n 1 413 LEU n 1 414 GLU n 1 415 ILE n 1 416 ILE n 1 417 LYS n 1 418 GLN n 1 419 GLY n 1 420 CYS n 1 421 GLU n 1 422 PHE n 1 423 GLU n 1 424 ASN n 1 425 THR n 1 426 VAL n 1 427 HIS n 1 428 LYS n 1 429 TRP n 1 430 ILE n 1 431 SER n 1 432 ILE n 1 433 THR n 1 434 GLU n 1 435 ALA n 1 436 LEU n 1 437 ALA n 1 438 PHE n 1 439 PHE n 1 440 HIS n 1 441 CYS n 1 442 CYS n 1 443 LEU n 1 444 ASN n 1 445 PRO n 1 446 ILE n 1 447 LEU n 1 448 TYR n 1 449 ALA n 1 450 PHE n 1 451 LEU n 1 452 GLY n 1 453 ALA n 1 454 LYS n 1 455 PHE n 1 456 LYS n 1 457 THR n 1 458 SER n 1 459 ALA n 1 460 GLN n 1 461 HIS n 1 462 ALA n 1 463 LEU n 1 464 THR n 1 465 SER n 1 466 GLY n 1 467 ARG n 1 468 PRO n 1 469 LEU n 1 470 GLU n 1 471 VAL n 1 472 LEU n 1 473 PHE n 1 474 GLN n 1 475 GLY n 1 476 PRO n 1 477 HIS n 1 478 HIS n 1 479 HIS n 1 480 HIS n 1 481 HIS n 1 482 HIS n 1 483 HIS n 1 484 HIS n 1 485 HIS n 1 486 HIS n 2 1 MET n 2 2 LEU n 2 3 LEU n 2 4 VAL n 2 5 ASN n 2 6 GLN n 2 7 SER n 2 8 HIS n 2 9 GLN n 2 10 GLY n 2 11 PHE n 2 12 ASN n 2 13 LYS n 2 14 GLU n 2 15 HIS n 2 16 THR n 2 17 SER n 2 18 LYS n 2 19 MET n 2 20 VAL n 2 21 SER n 2 22 ALA n 2 23 ILE n 2 24 VAL n 2 25 LEU n 2 26 TYR n 2 27 VAL n 2 28 LEU n 2 29 LEU n 2 30 ALA n 2 31 ALA n 2 32 ALA n 2 33 ALA n 2 34 HIS n 2 35 SER n 2 36 ALA n 2 37 PHE n 2 38 ALA n 2 39 MET n 2 40 ALA n 2 41 GLN n 2 42 VAL n 2 43 GLN n 2 44 LEU n 2 45 GLN n 2 46 GLU n 2 47 SER n 2 48 GLY n 2 49 GLY n 2 50 GLY n 2 51 LEU n 2 52 VAL n 2 53 GLN n 2 54 ALA n 2 55 GLY n 2 56 GLU n 2 57 SER n 2 58 LEU n 2 59 ARG n 2 60 LEU n 2 61 SER n 2 62 CYS n 2 63 ALA n 2 64 ALA n 2 65 SER n 2 66 GLY n 2 67 THR n 2 68 ILE n 2 69 PHE n 2 70 ARG n 2 71 LEU n 2 72 TYR n 2 73 ASP n 2 74 MET n 2 75 GLY n 2 76 TRP n 2 77 TYR n 2 78 ARG n 2 79 ARG n 2 80 VAL n 2 81 SER n 2 82 GLY n 2 83 ASN n 2 84 GLN n 2 85 ARG n 2 86 GLU n 2 87 LEU n 2 88 VAL n 2 89 ALA n 2 90 SER n 2 91 ILE n 2 92 THR n 2 93 SER n 2 94 GLY n 2 95 GLY n 2 96 SER n 2 97 THR n 2 98 LYS n 2 99 TYR n 2 100 GLY n 2 101 ASP n 2 102 SER n 2 103 VAL n 2 104 LYS n 2 105 GLY n 2 106 ARG n 2 107 PHE n 2 108 THR n 2 109 ILE n 2 110 SER n 2 111 ARG n 2 112 ASP n 2 113 ASN n 2 114 ALA n 2 115 LYS n 2 116 ASN n 2 117 THR n 2 118 VAL n 2 119 TYR n 2 120 LEU n 2 121 GLN n 2 122 MET n 2 123 SER n 2 124 SER n 2 125 LEU n 2 126 LYS n 2 127 PRO n 2 128 GLU n 2 129 ASP n 2 130 THR n 2 131 ALA n 2 132 VAL n 2 133 TYR n 2 134 TYR n 2 135 CYS n 2 136 ASN n 2 137 ALA n 2 138 GLU n 2 139 TYR n 2 140 ARG n 2 141 THR n 2 142 GLY n 2 143 ILE n 2 144 TRP n 2 145 GLU n 2 146 GLU n 2 147 LEU n 2 148 LEU n 2 149 ASP n 2 150 GLY n 2 151 TRP n 2 152 GLY n 2 153 GLN n 2 154 GLY n 2 155 THR n 2 156 GLN n 2 157 VAL n 2 158 THR n 2 159 VAL n 2 160 SER n 2 161 SER n 2 162 HIS n 2 163 HIS n 2 164 HIS n 2 165 HIS n 2 166 HIS n 2 167 HIS n 2 168 HIS n 2 169 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 138 ? ? cybC ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 139 386 human ? CXCR4 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 3 sample 'Biological sequence' 387 486 human ? CXCR4 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 169 ? ? ? ? ? ? ? ? ? 'Lama glama' 9844 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1D8L non-polymer . '(S)-N1-((1H-Benzo[d]imidazol-2-yl)methyl)-N1-(5,6,7,8-tetrahydroquinolin-8-yl)butane-1,4-diamine' AMD-070 'C21 H27 N5' 349.473 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CLR non-polymer . CHOLESTEROL ? 'C27 H46 O' 386.654 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -137 ? ? ? R . n A 1 2 LYS 2 -136 ? ? ? R . n A 1 3 THR 3 -135 ? ? ? R . n A 1 4 ILE 4 -134 ? ? ? R . n A 1 5 ILE 5 -133 ? ? ? R . n A 1 6 ALA 6 -132 ? ? ? R . n A 1 7 LEU 7 -131 ? ? ? R . n A 1 8 SER 8 -130 ? ? ? R . n A 1 9 TYR 9 -129 ? ? ? R . n A 1 10 ILE 10 -128 ? ? ? R . n A 1 11 PHE 11 -127 ? ? ? R . n A 1 12 CYS 12 -126 ? ? ? R . n A 1 13 LEU 13 -125 ? ? ? R . n A 1 14 VAL 14 -124 ? ? ? R . n A 1 15 PHE 15 -123 ? ? ? R . n A 1 16 ALA 16 -122 ? ? ? R . n A 1 17 ASP 17 -121 ? ? ? R . n A 1 18 TYR 18 -120 ? ? ? R . n A 1 19 LYS 19 -119 ? ? ? R . n A 1 20 ASP 20 -118 ? ? ? R . n A 1 21 ASP 21 -117 ? ? ? R . n A 1 22 ASP 22 -116 ? ? ? R . n A 1 23 ASP 23 -115 ? ? ? R . n A 1 24 LYS 24 -114 ? ? ? R . n A 1 25 GLY 25 -113 ? ? ? R . n A 1 26 SER 26 -112 ? ? ? R . n A 1 27 ALA 27 -111 ? ? ? R . n A 1 28 ASP 28 -110 ? ? ? R . n A 1 29 LEU 29 -109 ? ? ? R . n A 1 30 GLU 30 -108 ? ? ? R . n A 1 31 ASP 31 -107 ? ? ? R . n A 1 32 ASN 32 -106 ? ? ? R . n A 1 33 TRP 33 -105 ? ? ? R . n A 1 34 GLU 34 -104 ? ? ? R . n A 1 35 THR 35 -103 ? ? ? R . n A 1 36 LEU 36 -102 ? ? ? R . n A 1 37 ASN 37 -101 ? ? ? R . n A 1 38 ASP 38 -100 ? ? ? R . n A 1 39 ASN 39 -99 ? ? ? R . n A 1 40 LEU 40 -98 ? ? ? R . n A 1 41 LYS 41 -97 ? ? ? R . n A 1 42 VAL 42 -96 ? ? ? R . n A 1 43 ILE 43 -95 ? ? ? R . n A 1 44 GLU 44 -94 ? ? ? R . n A 1 45 LYS 45 -93 ? ? ? R . n A 1 46 ALA 46 -92 ? ? ? R . n A 1 47 ASP 47 -91 ? ? ? R . n A 1 48 ASN 48 -90 ? ? ? R . n A 1 49 ALA 49 -89 ? ? ? R . n A 1 50 ALA 50 -88 ? ? ? R . n A 1 51 GLN 51 -87 ? ? ? R . n A 1 52 VAL 52 -86 ? ? ? R . n A 1 53 LYS 53 -85 ? ? ? R . n A 1 54 ASP 54 -84 ? ? ? R . n A 1 55 ALA 55 -83 ? ? ? R . n A 1 56 LEU 56 -82 ? ? ? R . n A 1 57 THR 57 -81 ? ? ? R . n A 1 58 LYS 58 -80 ? ? ? R . n A 1 59 MET 59 -79 ? ? ? R . n A 1 60 ARG 60 -78 ? ? ? R . n A 1 61 ALA 61 -77 ? ? ? R . n A 1 62 ALA 62 -76 ? ? ? R . n A 1 63 ALA 63 -75 ? ? ? R . n A 1 64 LEU 64 -74 ? ? ? R . n A 1 65 ASP 65 -73 ? ? ? R . n A 1 66 ALA 66 -72 ? ? ? R . n A 1 67 GLN 67 -71 ? ? ? R . n A 1 68 LYS 68 -70 ? ? ? R . n A 1 69 ALA 69 -69 ? ? ? R . n A 1 70 THR 70 -68 ? ? ? R . n A 1 71 PRO 71 -67 ? ? ? R . n A 1 72 PRO 72 -66 ? ? ? R . n A 1 73 LYS 73 -65 ? ? ? R . n A 1 74 LEU 74 -64 ? ? ? R . n A 1 75 GLU 75 -63 ? ? ? R . n A 1 76 ASP 76 -62 ? ? ? R . n A 1 77 LYS 77 -61 ? ? ? R . n A 1 78 SER 78 -60 ? ? ? R . n A 1 79 PRO 79 -59 ? ? ? R . n A 1 80 ASP 80 -58 ? ? ? R . n A 1 81 SER 81 -57 ? ? ? R . n A 1 82 PRO 82 -56 ? ? ? R . n A 1 83 GLU 83 -55 ? ? ? R . n A 1 84 MET 84 -54 ? ? ? R . n A 1 85 LYS 85 -53 ? ? ? R . n A 1 86 ASP 86 -52 ? ? ? R . n A 1 87 PHE 87 -51 ? ? ? R . n A 1 88 ARG 88 -50 ? ? ? R . n A 1 89 HIS 89 -49 ? ? ? R . n A 1 90 GLY 90 -48 ? ? ? R . n A 1 91 PHE 91 -47 ? ? ? R . n A 1 92 ASP 92 -46 ? ? ? R . n A 1 93 ILE 93 -45 ? ? ? R . n A 1 94 LEU 94 -44 ? ? ? R . n A 1 95 VAL 95 -43 ? ? ? R . n A 1 96 GLY 96 -42 ? ? ? R . n A 1 97 GLN 97 -41 ? ? ? R . n A 1 98 ILE 98 -40 ? ? ? R . n A 1 99 ASP 99 -39 ? ? ? R . n A 1 100 ASP 100 -38 ? ? ? R . n A 1 101 ALA 101 -37 ? ? ? R . n A 1 102 LEU 102 -36 ? ? ? R . n A 1 103 LYS 103 -35 ? ? ? R . n A 1 104 LEU 104 -34 ? ? ? R . n A 1 105 ALA 105 -33 ? ? ? R . n A 1 106 ASN 106 -32 ? ? ? R . n A 1 107 GLU 107 -31 ? ? ? R . n A 1 108 GLY 108 -30 ? ? ? R . n A 1 109 LYS 109 -29 ? ? ? R . n A 1 110 VAL 110 -28 ? ? ? R . n A 1 111 LYS 111 -27 ? ? ? R . n A 1 112 GLU 112 -26 ? ? ? R . n A 1 113 ALA 113 -25 ? ? ? R . n A 1 114 GLN 114 -24 ? ? ? R . n A 1 115 ALA 115 -23 ? ? ? R . n A 1 116 ALA 116 -22 ? ? ? R . n A 1 117 ALA 117 -21 ? ? ? R . n A 1 118 GLU 118 -20 ? ? ? R . n A 1 119 GLN 119 -19 ? ? ? R . n A 1 120 LEU 120 -18 ? ? ? R . n A 1 121 LYS 121 -17 ? ? ? R . n A 1 122 THR 122 -16 ? ? ? R . n A 1 123 THR 123 -15 ? ? ? R . n A 1 124 ARG 124 -14 ? ? ? R . n A 1 125 ASN 125 -13 ? ? ? R . n A 1 126 ALA 126 -12 ? ? ? R . n A 1 127 TYR 127 -11 ? ? ? R . n A 1 128 ILE 128 -10 ? ? ? R . n A 1 129 GLN 129 -9 ? ? ? R . n A 1 130 LYS 130 -8 ? ? ? R . n A 1 131 TYR 131 -7 ? ? ? R . n A 1 132 LEU 132 -6 ? ? ? R . n A 1 133 LEU 133 -5 ? ? ? R . n A 1 134 VAL 134 -4 ? ? ? R . n A 1 135 PRO 135 -3 ? ? ? R . n A 1 136 ARG 136 -2 ? ? ? R . n A 1 137 GLY 137 -1 ? ? ? R . n A 1 138 SER 138 0 ? ? ? R . n A 1 139 MET 139 1 ? ? ? R . n A 1 140 GLU 140 2 ? ? ? R . n A 1 141 GLY 141 3 ? ? ? R . n A 1 142 ILE 142 4 ? ? ? R . n A 1 143 SER 143 5 ? ? ? R . n A 1 144 ILE 144 6 ? ? ? R . n A 1 145 TYR 145 7 ? ? ? R . n A 1 146 THR 146 8 ? ? ? R . n A 1 147 SER 147 9 ? ? ? R . n A 1 148 ASP 148 10 ? ? ? R . n A 1 149 ASN 149 11 ? ? ? R . n A 1 150 TYR 150 12 ? ? ? R . n A 1 151 THR 151 13 ? ? ? R . n A 1 152 GLU 152 14 ? ? ? R . n A 1 153 GLU 153 15 ? ? ? R . n A 1 154 MET 154 16 ? ? ? R . n A 1 155 GLY 155 17 ? ? ? R . n A 1 156 SER 156 18 ? ? ? R . n A 1 157 GLY 157 19 ? ? ? R . n A 1 158 ASP 158 20 ? ? ? R . n A 1 159 TYR 159 21 ? ? ? R . n A 1 160 ASP 160 22 ? ? ? R . n A 1 161 SER 161 23 ? ? ? R . n A 1 162 MET 162 24 ? ? ? R . n A 1 163 LYS 163 25 ? ? ? R . n A 1 164 GLU 164 26 ? ? ? R . n A 1 165 PRO 165 27 ? ? ? R . n A 1 166 CYS 166 28 ? ? ? R . n A 1 167 PHE 167 29 ? ? ? R . n A 1 168 ARG 168 30 ? ? ? R . n A 1 169 GLU 169 31 ? ? ? R . n A 1 170 GLU 170 32 ? ? ? R . n A 1 171 ASN 171 33 ? ? ? R . n A 1 172 ALA 172 34 34 ALA ALA R . n A 1 173 ASN 173 35 35 ASN ASN R . n A 1 174 PHE 174 36 36 PHE PHE R . n A 1 175 ASN 175 37 37 ASN ASN R . n A 1 176 LYS 176 38 38 LYS LYS R . n A 1 177 ILE 177 39 39 ILE ILE R . n A 1 178 PHE 178 40 40 PHE PHE R . n A 1 179 LEU 179 41 41 LEU LEU R . n A 1 180 PRO 180 42 42 PRO PRO R . n A 1 181 THR 181 43 43 THR THR R . n A 1 182 ILE 182 44 44 ILE ILE R . n A 1 183 TYR 183 45 45 TYR TYR R . n A 1 184 SER 184 46 46 SER SER R . n A 1 185 ILE 185 47 47 ILE ILE R . n A 1 186 ILE 186 48 48 ILE ILE R . n A 1 187 PHE 187 49 49 PHE PHE R . n A 1 188 LEU 188 50 50 LEU LEU R . n A 1 189 THR 189 51 51 THR THR R . n A 1 190 GLY 190 52 52 GLY GLY R . n A 1 191 ILE 191 53 53 ILE ILE R . n A 1 192 VAL 192 54 54 VAL VAL R . n A 1 193 GLY 193 55 55 GLY GLY R . n A 1 194 ASN 194 56 56 ASN ASN R . n A 1 195 GLY 195 57 57 GLY GLY R . n A 1 196 LEU 196 58 58 LEU LEU R . n A 1 197 VAL 197 59 59 VAL VAL R . n A 1 198 ILE 198 60 60 ILE ILE R . n A 1 199 LEU 199 61 61 LEU LEU R . n A 1 200 VAL 200 62 62 VAL VAL R . n A 1 201 MET 201 63 63 MET MET R . n A 1 202 GLY 202 64 64 GLY GLY R . n A 1 203 TYR 203 65 65 TYR TYR R . n A 1 204 GLN 204 66 66 GLN GLN R . n A 1 205 LYS 205 67 67 LYS LYS R . n A 1 206 LYS 206 68 68 LYS LYS R . n A 1 207 LEU 207 69 69 LEU LEU R . n A 1 208 ARG 208 70 70 ARG ARG R . n A 1 209 SER 209 71 71 SER SER R . n A 1 210 MET 210 72 72 MET MET R . n A 1 211 THR 211 73 73 THR THR R . n A 1 212 ASP 212 74 74 ASP ASP R . n A 1 213 LYS 213 75 75 LYS LYS R . n A 1 214 TYR 214 76 76 TYR TYR R . n A 1 215 ARG 215 77 77 ARG ARG R . n A 1 216 LEU 216 78 78 LEU LEU R . n A 1 217 HIS 217 79 79 HIS HIS R . n A 1 218 LEU 218 80 80 LEU LEU R . n A 1 219 SER 219 81 81 SER SER R . n A 1 220 VAL 220 82 82 VAL VAL R . n A 1 221 ALA 221 83 83 ALA ALA R . n A 1 222 ASP 222 84 84 ASP ASP R . n A 1 223 LEU 223 85 85 LEU LEU R . n A 1 224 LEU 224 86 86 LEU LEU R . n A 1 225 PHE 225 87 87 PHE PHE R . n A 1 226 VAL 226 88 88 VAL VAL R . n A 1 227 ILE 227 89 89 ILE ILE R . n A 1 228 THR 228 90 90 THR THR R . n A 1 229 LEU 229 91 91 LEU LEU R . n A 1 230 PRO 230 92 92 PRO PRO R . n A 1 231 PHE 231 93 93 PHE PHE R . n A 1 232 TRP 232 94 94 TRP TRP R . n A 1 233 ALA 233 95 95 ALA ALA R . n A 1 234 VAL 234 96 96 VAL VAL R . n A 1 235 ASP 235 97 97 ASP ASP R . n A 1 236 ALA 236 98 98 ALA ALA R . n A 1 237 VAL 237 99 99 VAL VAL R . n A 1 238 ALA 238 100 100 ALA ALA R . n A 1 239 ASN 239 101 101 ASN ASN R . n A 1 240 TRP 240 102 102 TRP TRP R . n A 1 241 TYR 241 103 103 TYR TYR R . n A 1 242 PHE 242 104 104 PHE PHE R . n A 1 243 GLY 243 105 105 GLY GLY R . n A 1 244 ASN 244 106 106 ASN ASN R . n A 1 245 PHE 245 107 107 PHE PHE R . n A 1 246 LEU 246 108 108 LEU LEU R . n A 1 247 CYS 247 109 109 CYS CYS R . n A 1 248 LYS 248 110 110 LYS LYS R . n A 1 249 ALA 249 111 111 ALA ALA R . n A 1 250 VAL 250 112 112 VAL VAL R . n A 1 251 HIS 251 113 113 HIS HIS R . n A 1 252 VAL 252 114 114 VAL VAL R . n A 1 253 ILE 253 115 115 ILE ILE R . n A 1 254 TYR 254 116 116 TYR TYR R . n A 1 255 THR 255 117 117 THR THR R . n A 1 256 VAL 256 118 118 VAL VAL R . n A 1 257 ASN 257 119 119 ASN ASN R . n A 1 258 LEU 258 120 120 LEU LEU R . n A 1 259 TYR 259 121 121 TYR TYR R . n A 1 260 SER 260 122 122 SER SER R . n A 1 261 SER 261 123 123 SER SER R . n A 1 262 VAL 262 124 124 VAL VAL R . n A 1 263 TRP 263 125 125 TRP TRP R . n A 1 264 ILE 264 126 126 ILE ILE R . n A 1 265 LEU 265 127 127 LEU LEU R . n A 1 266 ALA 266 128 128 ALA ALA R . n A 1 267 PHE 267 129 129 PHE PHE R . n A 1 268 ILE 268 130 130 ILE ILE R . n A 1 269 SER 269 131 131 SER SER R . n A 1 270 LEU 270 132 132 LEU LEU R . n A 1 271 ASP 271 133 133 ASP ASP R . n A 1 272 ARG 272 134 134 ARG ARG R . n A 1 273 TYR 273 135 135 TYR TYR R . n A 1 274 LEU 274 136 136 LEU LEU R . n A 1 275 ALA 275 137 137 ALA ALA R . n A 1 276 ILE 276 138 138 ILE ILE R . n A 1 277 VAL 277 139 139 VAL VAL R . n A 1 278 HIS 278 140 140 HIS HIS R . n A 1 279 ALA 279 141 141 ALA ALA R . n A 1 280 THR 280 142 142 THR THR R . n A 1 281 ASN 281 143 143 ASN ASN R . n A 1 282 SER 282 144 144 SER SER R . n A 1 283 GLN 283 145 145 GLN GLN R . n A 1 284 ARG 284 146 146 ARG ARG R . n A 1 285 PRO 285 147 147 PRO PRO R . n A 1 286 ARG 286 148 148 ARG ARG R . n A 1 287 LYS 287 149 149 LYS LYS R . n A 1 288 LEU 288 150 150 LEU LEU R . n A 1 289 LEU 289 151 151 LEU LEU R . n A 1 290 ALA 290 152 152 ALA ALA R . n A 1 291 GLU 291 153 153 GLU GLU R . n A 1 292 LYS 292 154 154 LYS LYS R . n A 1 293 VAL 293 155 155 VAL VAL R . n A 1 294 VAL 294 156 156 VAL VAL R . n A 1 295 TYR 295 157 157 TYR TYR R . n A 1 296 VAL 296 158 158 VAL VAL R . n A 1 297 GLY 297 159 159 GLY GLY R . n A 1 298 VAL 298 160 160 VAL VAL R . n A 1 299 TRP 299 161 161 TRP TRP R . n A 1 300 ILE 300 162 162 ILE ILE R . n A 1 301 PRO 301 163 163 PRO PRO R . n A 1 302 ALA 302 164 164 ALA ALA R . n A 1 303 LEU 303 165 165 LEU LEU R . n A 1 304 LEU 304 166 166 LEU LEU R . n A 1 305 LEU 305 167 167 LEU LEU R . n A 1 306 THR 306 168 168 THR THR R . n A 1 307 ILE 307 169 169 ILE ILE R . n A 1 308 PRO 308 170 170 PRO PRO R . n A 1 309 ASP 309 171 171 ASP ASP R . n A 1 310 PHE 310 172 172 PHE PHE R . n A 1 311 ILE 311 173 173 ILE ILE R . n A 1 312 PHE 312 174 174 PHE PHE R . n A 1 313 ALA 313 175 175 ALA ALA R . n A 1 314 ASN 314 176 176 ASN ASN R . n A 1 315 VAL 315 177 177 VAL VAL R . n A 1 316 SER 316 178 178 SER SER R . n A 1 317 GLU 317 179 179 GLU GLU R . n A 1 318 ALA 318 180 180 ALA ALA R . n A 1 319 ASP 319 181 181 ASP ASP R . n A 1 320 ASP 320 182 182 ASP ASP R . n A 1 321 ARG 321 183 183 ARG ARG R . n A 1 322 TYR 322 184 184 TYR TYR R . n A 1 323 ILE 323 185 185 ILE ILE R . n A 1 324 CYS 324 186 186 CYS CYS R . n A 1 325 ASP 325 187 187 ASP ASP R . n A 1 326 ARG 326 188 188 ARG ARG R . n A 1 327 PHE 327 189 189 PHE PHE R . n A 1 328 TYR 328 190 190 TYR TYR R . n A 1 329 PRO 329 191 191 PRO PRO R . n A 1 330 ASN 330 192 192 ASN ASN R . n A 1 331 ASP 331 193 193 ASP ASP R . n A 1 332 LEU 332 194 194 LEU LEU R . n A 1 333 TRP 333 195 195 TRP TRP R . n A 1 334 VAL 334 196 196 VAL VAL R . n A 1 335 VAL 335 197 197 VAL VAL R . n A 1 336 VAL 336 198 198 VAL VAL R . n A 1 337 PHE 337 199 199 PHE PHE R . n A 1 338 GLN 338 200 200 GLN GLN R . n A 1 339 PHE 339 201 201 PHE PHE R . n A 1 340 GLN 340 202 202 GLN GLN R . n A 1 341 HIS 341 203 203 HIS HIS R . n A 1 342 ILE 342 204 204 ILE ILE R . n A 1 343 MET 343 205 205 MET MET R . n A 1 344 VAL 344 206 206 VAL VAL R . n A 1 345 GLY 345 207 207 GLY GLY R . n A 1 346 LEU 346 208 208 LEU LEU R . n A 1 347 ILE 347 209 209 ILE ILE R . n A 1 348 LEU 348 210 210 LEU LEU R . n A 1 349 PRO 349 211 211 PRO PRO R . n A 1 350 GLY 350 212 212 GLY GLY R . n A 1 351 ILE 351 213 213 ILE ILE R . n A 1 352 VAL 352 214 214 VAL VAL R . n A 1 353 ILE 353 215 215 ILE ILE R . n A 1 354 LEU 354 216 216 LEU LEU R . n A 1 355 SER 355 217 217 SER SER R . n A 1 356 CYS 356 218 218 CYS CYS R . n A 1 357 TYR 357 219 219 TYR TYR R . n A 1 358 CYS 358 220 220 CYS CYS R . n A 1 359 ILE 359 221 221 ILE ILE R . n A 1 360 ILE 360 222 222 ILE ILE R . n A 1 361 ILE 361 223 223 ILE ILE R . n A 1 362 SER 362 224 224 SER SER R . n A 1 363 ARG 363 225 225 ARG ARG R . n A 1 364 LEU 364 226 226 LEU LEU R . n A 1 365 LYS 365 227 227 LYS LYS R . n A 1 366 SER 366 228 228 SER SER R . n A 1 367 VAL 367 229 229 VAL VAL R . n A 1 368 ARG 368 230 230 ARG ARG R . n A 1 369 LEU 369 231 231 LEU LEU R . n A 1 370 LEU 370 232 232 LEU LEU R . n A 1 371 SER 371 233 233 SER SER R . n A 1 372 GLY 372 234 234 GLY GLY R . n A 1 373 SER 373 235 235 SER SER R . n A 1 374 ARG 374 236 236 ARG ARG R . n A 1 375 GLU 375 237 237 GLU GLU R . n A 1 376 LYS 376 238 238 LYS LYS R . n A 1 377 ASP 377 239 239 ASP ASP R . n A 1 378 ARG 378 240 240 ARG ARG R . n A 1 379 ASN 379 241 241 ASN ASN R . n A 1 380 LEU 380 242 242 LEU LEU R . n A 1 381 ARG 381 243 243 ARG ARG R . n A 1 382 ARG 382 244 244 ARG ARG R . n A 1 383 ILE 383 245 245 ILE ILE R . n A 1 384 THR 384 246 246 THR THR R . n A 1 385 ARG 385 247 247 ARG ARG R . n A 1 386 PRO 386 248 248 PRO PRO R . n A 1 387 THR 387 249 249 THR THR R . n A 1 388 VAL 388 250 250 VAL VAL R . n A 1 389 ILE 389 251 251 ILE ILE R . n A 1 390 LEU 390 252 252 LEU LEU R . n A 1 391 ILE 391 253 253 ILE ILE R . n A 1 392 LEU 392 254 254 LEU LEU R . n A 1 393 ALA 393 255 255 ALA ALA R . n A 1 394 PHE 394 256 256 PHE PHE R . n A 1 395 PHE 395 257 257 PHE PHE R . n A 1 396 ALA 396 258 258 ALA ALA R . n A 1 397 CYS 397 259 259 CYS CYS R . n A 1 398 TRP 398 260 260 TRP TRP R . n A 1 399 LEU 399 261 261 LEU LEU R . n A 1 400 PRO 400 262 262 PRO PRO R . n A 1 401 TYR 401 263 263 TYR TYR R . n A 1 402 TYR 402 264 264 TYR TYR R . n A 1 403 ILE 403 265 265 ILE ILE R . n A 1 404 GLY 404 266 266 GLY GLY R . n A 1 405 ILE 405 267 267 ILE ILE R . n A 1 406 SER 406 268 268 SER SER R . n A 1 407 ILE 407 269 269 ILE ILE R . n A 1 408 ASP 408 270 270 ASP ASP R . n A 1 409 SER 409 271 271 SER SER R . n A 1 410 PHE 410 272 272 PHE PHE R . n A 1 411 ILE 411 273 273 ILE ILE R . n A 1 412 LEU 412 274 274 LEU LEU R . n A 1 413 LEU 413 275 275 LEU LEU R . n A 1 414 GLU 414 276 276 GLU GLU R . n A 1 415 ILE 415 277 277 ILE ILE R . n A 1 416 ILE 416 278 278 ILE ILE R . n A 1 417 LYS 417 279 279 LYS LYS R . n A 1 418 GLN 418 280 280 GLN GLN R . n A 1 419 GLY 419 281 281 GLY GLY R . n A 1 420 CYS 420 282 282 CYS CYS R . n A 1 421 GLU 421 283 283 GLU GLU R . n A 1 422 PHE 422 284 284 PHE PHE R . n A 1 423 GLU 423 285 285 GLU GLU R . n A 1 424 ASN 424 286 286 ASN ASN R . n A 1 425 THR 425 287 287 THR THR R . n A 1 426 VAL 426 288 288 VAL VAL R . n A 1 427 HIS 427 289 289 HIS HIS R . n A 1 428 LYS 428 290 290 LYS LYS R . n A 1 429 TRP 429 291 291 TRP TRP R . n A 1 430 ILE 430 292 292 ILE ILE R . n A 1 431 SER 431 293 293 SER SER R . n A 1 432 ILE 432 294 294 ILE ILE R . n A 1 433 THR 433 295 295 THR THR R . n A 1 434 GLU 434 296 296 GLU GLU R . n A 1 435 ALA 435 297 297 ALA ALA R . n A 1 436 LEU 436 298 298 LEU LEU R . n A 1 437 ALA 437 299 299 ALA ALA R . n A 1 438 PHE 438 300 300 PHE PHE R . n A 1 439 PHE 439 301 301 PHE PHE R . n A 1 440 HIS 440 302 302 HIS HIS R . n A 1 441 CYS 441 303 303 CYS CYS R . n A 1 442 CYS 442 304 304 CYS CYS R . n A 1 443 LEU 443 305 305 LEU LEU R . n A 1 444 ASN 444 306 306 ASN ASN R . n A 1 445 PRO 445 307 307 PRO PRO R . n A 1 446 ILE 446 308 308 ILE ILE R . n A 1 447 LEU 447 309 309 LEU LEU R . n A 1 448 TYR 448 310 310 TYR TYR R . n A 1 449 ALA 449 311 311 ALA ALA R . n A 1 450 PHE 450 312 312 PHE PHE R . n A 1 451 LEU 451 313 313 LEU LEU R . n A 1 452 GLY 452 314 314 GLY GLY R . n A 1 453 ALA 453 315 315 ALA ALA R . n A 1 454 LYS 454 316 ? ? ? R . n A 1 455 PHE 455 317 ? ? ? R . n A 1 456 LYS 456 318 ? ? ? R . n A 1 457 THR 457 319 ? ? ? R . n A 1 458 SER 458 320 ? ? ? R . n A 1 459 ALA 459 321 ? ? ? R . n A 1 460 GLN 460 322 ? ? ? R . n A 1 461 HIS 461 323 ? ? ? R . n A 1 462 ALA 462 324 ? ? ? R . n A 1 463 LEU 463 325 ? ? ? R . n A 1 464 THR 464 326 ? ? ? R . n A 1 465 SER 465 327 ? ? ? R . n A 1 466 GLY 466 328 ? ? ? R . n A 1 467 ARG 467 329 ? ? ? R . n A 1 468 PRO 468 330 ? ? ? R . n A 1 469 LEU 469 331 ? ? ? R . n A 1 470 GLU 470 332 ? ? ? R . n A 1 471 VAL 471 333 ? ? ? R . n A 1 472 LEU 472 334 ? ? ? R . n A 1 473 PHE 473 335 ? ? ? R . n A 1 474 GLN 474 336 ? ? ? R . n A 1 475 GLY 475 337 ? ? ? R . n A 1 476 PRO 476 338 ? ? ? R . n A 1 477 HIS 477 339 ? ? ? R . n A 1 478 HIS 478 340 ? ? ? R . n A 1 479 HIS 479 341 ? ? ? R . n A 1 480 HIS 480 342 ? ? ? R . n A 1 481 HIS 481 343 ? ? ? R . n A 1 482 HIS 482 344 ? ? ? R . n A 1 483 HIS 483 345 ? ? ? R . n A 1 484 HIS 484 346 ? ? ? R . n A 1 485 HIS 485 347 ? ? ? R . n A 1 486 HIS 486 348 ? ? ? R . n B 2 1 MET 1 -37 ? ? ? N . n B 2 2 LEU 2 -36 ? ? ? N . n B 2 3 LEU 3 -35 ? ? ? N . n B 2 4 VAL 4 -34 ? ? ? N . n B 2 5 ASN 5 -33 ? ? ? N . n B 2 6 GLN 6 -32 ? ? ? N . n B 2 7 SER 7 -31 ? ? ? N . n B 2 8 HIS 8 -30 ? ? ? N . n B 2 9 GLN 9 -29 ? ? ? N . n B 2 10 GLY 10 -28 ? ? ? N . n B 2 11 PHE 11 -27 ? ? ? N . n B 2 12 ASN 12 -26 ? ? ? N . n B 2 13 LYS 13 -25 ? ? ? N . n B 2 14 GLU 14 -24 ? ? ? N . n B 2 15 HIS 15 -23 ? ? ? N . n B 2 16 THR 16 -22 ? ? ? N . n B 2 17 SER 17 -21 ? ? ? N . n B 2 18 LYS 18 -20 ? ? ? N . n B 2 19 MET 19 -19 ? ? ? N . n B 2 20 VAL 20 -18 ? ? ? N . n B 2 21 SER 21 -17 ? ? ? N . n B 2 22 ALA 22 -16 ? ? ? N . n B 2 23 ILE 23 -15 ? ? ? N . n B 2 24 VAL 24 -14 ? ? ? N . n B 2 25 LEU 25 -13 ? ? ? N . n B 2 26 TYR 26 -12 ? ? ? N . n B 2 27 VAL 27 -11 ? ? ? N . n B 2 28 LEU 28 -10 ? ? ? N . n B 2 29 LEU 29 -9 ? ? ? N . n B 2 30 ALA 30 -8 ? ? ? N . n B 2 31 ALA 31 -7 ? ? ? N . n B 2 32 ALA 32 -6 ? ? ? N . n B 2 33 ALA 33 -5 ? ? ? N . n B 2 34 HIS 34 -4 ? ? ? N . n B 2 35 SER 35 -3 ? ? ? N . n B 2 36 ALA 36 -2 ? ? ? N . n B 2 37 PHE 37 -1 ? ? ? N . n B 2 38 ALA 38 0 ? ? ? N . n B 2 39 MET 39 1 ? ? ? N . n B 2 40 ALA 40 2 ? ? ? N . n B 2 41 GLN 41 3 3 GLN GLN N . n B 2 42 VAL 42 4 4 VAL VAL N . n B 2 43 GLN 43 5 5 GLN GLN N . n B 2 44 LEU 44 6 6 LEU LEU N . n B 2 45 GLN 45 7 7 GLN GLN N . n B 2 46 GLU 46 8 8 GLU GLU N . n B 2 47 SER 47 9 9 SER SER N . n B 2 48 GLY 48 10 10 GLY GLY N . n B 2 49 GLY 49 11 11 GLY GLY N . n B 2 50 GLY 50 12 12 GLY GLY N . n B 2 51 LEU 51 13 13 LEU LEU N . n B 2 52 VAL 52 14 14 VAL VAL N . n B 2 53 GLN 53 15 15 GLN GLN N . n B 2 54 ALA 54 16 16 ALA ALA N . n B 2 55 GLY 55 17 17 GLY GLY N . n B 2 56 GLU 56 18 18 GLU GLU N . n B 2 57 SER 57 19 19 SER SER N . n B 2 58 LEU 58 20 20 LEU LEU N . n B 2 59 ARG 59 21 21 ARG ARG N . n B 2 60 LEU 60 22 22 LEU LEU N . n B 2 61 SER 61 23 23 SER SER N . n B 2 62 CYS 62 24 24 CYS CYS N . n B 2 63 ALA 63 25 25 ALA ALA N . n B 2 64 ALA 64 26 26 ALA ALA N . n B 2 65 SER 65 27 27 SER SER N . n B 2 66 GLY 66 28 28 GLY GLY N . n B 2 67 THR 67 29 29 THR THR N . n B 2 68 ILE 68 30 30 ILE ILE N . n B 2 69 PHE 69 31 31 PHE PHE N . n B 2 70 ARG 70 32 32 ARG ARG N . n B 2 71 LEU 71 33 33 LEU LEU N . n B 2 72 TYR 72 34 34 TYR TYR N . n B 2 73 ASP 73 35 35 ASP ASP N . n B 2 74 MET 74 36 36 MET MET N . n B 2 75 GLY 75 37 37 GLY GLY N . n B 2 76 TRP 76 38 38 TRP TRP N . n B 2 77 TYR 77 39 39 TYR TYR N . n B 2 78 ARG 78 40 40 ARG ARG N . n B 2 79 ARG 79 41 ? ? ? N . n B 2 80 VAL 80 42 ? ? ? N . n B 2 81 SER 81 43 ? ? ? N . n B 2 82 GLY 82 44 ? ? ? N . n B 2 83 ASN 83 45 ? ? ? N . n B 2 84 GLN 84 46 46 GLN GLN N . n B 2 85 ARG 85 47 47 ARG ARG N . n B 2 86 GLU 86 48 48 GLU GLU N . n B 2 87 LEU 87 49 49 LEU LEU N . n B 2 88 VAL 88 50 50 VAL VAL N . n B 2 89 ALA 89 51 51 ALA ALA N . n B 2 90 SER 90 52 52 SER SER N . n B 2 91 ILE 91 53 53 ILE ILE N . n B 2 92 THR 92 54 54 THR THR N . n B 2 93 SER 93 55 55 SER SER N . n B 2 94 GLY 94 56 56 GLY GLY N . n B 2 95 GLY 95 57 57 GLY GLY N . n B 2 96 SER 96 58 58 SER SER N . n B 2 97 THR 97 59 59 THR THR N . n B 2 98 LYS 98 60 60 LYS LYS N . n B 2 99 TYR 99 61 61 TYR TYR N . n B 2 100 GLY 100 62 62 GLY GLY N . n B 2 101 ASP 101 63 63 ASP ASP N . n B 2 102 SER 102 64 64 SER SER N . n B 2 103 VAL 103 65 65 VAL VAL N . n B 2 104 LYS 104 66 66 LYS LYS N . n B 2 105 GLY 105 67 67 GLY GLY N . n B 2 106 ARG 106 68 68 ARG ARG N . n B 2 107 PHE 107 69 69 PHE PHE N . n B 2 108 THR 108 70 70 THR THR N . n B 2 109 ILE 109 71 71 ILE ILE N . n B 2 110 SER 110 72 72 SER SER N . n B 2 111 ARG 111 73 73 ARG ARG N . n B 2 112 ASP 112 74 74 ASP ASP N . n B 2 113 ASN 113 75 75 ASN ASN N . n B 2 114 ALA 114 76 76 ALA ALA N . n B 2 115 LYS 115 77 77 LYS LYS N . n B 2 116 ASN 116 78 78 ASN ASN N . n B 2 117 THR 117 79 79 THR THR N . n B 2 118 VAL 118 80 80 VAL VAL N . n B 2 119 TYR 119 81 81 TYR TYR N . n B 2 120 LEU 120 82 82 LEU LEU N . n B 2 121 GLN 121 83 83 GLN GLN N . n B 2 122 MET 122 84 84 MET MET N . n B 2 123 SER 123 85 85 SER SER N . n B 2 124 SER 124 86 86 SER SER N . n B 2 125 LEU 125 87 87 LEU LEU N . n B 2 126 LYS 126 88 88 LYS LYS N . n B 2 127 PRO 127 89 89 PRO PRO N . n B 2 128 GLU 128 90 90 GLU GLU N . n B 2 129 ASP 129 91 91 ASP ASP N . n B 2 130 THR 130 92 92 THR THR N . n B 2 131 ALA 131 93 93 ALA ALA N . n B 2 132 VAL 132 94 94 VAL VAL N . n B 2 133 TYR 133 95 95 TYR TYR N . n B 2 134 TYR 134 96 96 TYR TYR N . n B 2 135 CYS 135 97 97 CYS CYS N . n B 2 136 ASN 136 98 98 ASN ASN N . n B 2 137 ALA 137 99 99 ALA ALA N . n B 2 138 GLU 138 100 100 GLU GLU N . n B 2 139 TYR 139 101 101 TYR TYR N . n B 2 140 ARG 140 102 102 ARG ARG N . n B 2 141 THR 141 103 103 THR THR N . n B 2 142 GLY 142 104 104 GLY GLY N . n B 2 143 ILE 143 105 105 ILE ILE N . n B 2 144 TRP 144 106 106 TRP TRP N . n B 2 145 GLU 145 107 107 GLU GLU N . n B 2 146 GLU 146 108 108 GLU GLU N . n B 2 147 LEU 147 109 109 LEU LEU N . n B 2 148 LEU 148 110 110 LEU LEU N . n B 2 149 ASP 149 111 111 ASP ASP N . n B 2 150 GLY 150 112 112 GLY GLY N . n B 2 151 TRP 151 113 113 TRP TRP N . n B 2 152 GLY 152 114 114 GLY GLY N . n B 2 153 GLN 153 115 115 GLN GLN N . n B 2 154 GLY 154 116 116 GLY GLY N . n B 2 155 THR 155 117 117 THR THR N . n B 2 156 GLN 156 118 118 GLN GLN N . n B 2 157 VAL 157 119 119 VAL VAL N . n B 2 158 THR 158 120 120 THR THR N . n B 2 159 VAL 159 121 121 VAL VAL N . n B 2 160 SER 160 122 122 SER SER N . n B 2 161 SER 161 123 123 SER SER N . n B 2 162 HIS 162 124 ? ? ? N . n B 2 163 HIS 163 125 ? ? ? N . n B 2 164 HIS 164 126 ? ? ? N . n B 2 165 HIS 165 127 ? ? ? N . n B 2 166 HIS 166 128 ? ? ? N . n B 2 167 HIS 167 129 ? ? ? N . n B 2 168 HIS 168 130 ? ? ? N . n B 2 169 HIS 169 131 ? ? ? N . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1D8L _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1D8L _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1D8L 1 401 1 A1D8L 070 R . D 4 CLR 1 402 402 CLR CLR R . E 4 CLR 1 403 403 CLR CLR R . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 N GLN 3 ? CG ? B GLN 41 CG 2 1 Y 1 N GLN 3 ? CD ? B GLN 41 CD 3 1 Y 1 N GLN 3 ? OE1 ? B GLN 41 OE1 4 1 Y 1 N GLN 3 ? NE2 ? B GLN 41 NE2 5 1 Y 1 N GLN 5 ? CG ? B GLN 43 CG 6 1 Y 1 N GLN 5 ? CD ? B GLN 43 CD 7 1 Y 1 N GLN 5 ? OE1 ? B GLN 43 OE1 8 1 Y 1 N GLN 5 ? NE2 ? B GLN 43 NE2 9 1 Y 1 N LEU 13 ? CG ? B LEU 51 CG 10 1 Y 1 N LEU 13 ? CD1 ? B LEU 51 CD1 11 1 Y 1 N LEU 13 ? CD2 ? B LEU 51 CD2 12 1 Y 1 N GLN 15 ? CG ? B GLN 53 CG 13 1 Y 1 N GLN 15 ? CD ? B GLN 53 CD 14 1 Y 1 N GLN 15 ? OE1 ? B GLN 53 OE1 15 1 Y 1 N GLN 15 ? NE2 ? B GLN 53 NE2 16 1 Y 1 N SER 27 ? OG ? B SER 65 OG 17 1 Y 1 N LEU 49 ? CG ? B LEU 87 CG 18 1 Y 1 N LEU 49 ? CD1 ? B LEU 87 CD1 19 1 Y 1 N LEU 49 ? CD2 ? B LEU 87 CD2 20 1 Y 1 N SER 52 ? OG ? B SER 90 OG 21 1 Y 1 N SER 58 ? OG ? B SER 96 OG 22 1 Y 1 N LYS 60 ? CG ? B LYS 98 CG 23 1 Y 1 N LYS 60 ? CD ? B LYS 98 CD 24 1 Y 1 N LYS 60 ? CE ? B LYS 98 CE 25 1 Y 1 N LYS 60 ? NZ ? B LYS 98 NZ 26 1 Y 1 N ASP 63 ? CG ? B ASP 101 CG 27 1 Y 1 N ASP 63 ? OD1 ? B ASP 101 OD1 28 1 Y 1 N ASP 63 ? OD2 ? B ASP 101 OD2 29 1 Y 1 N SER 64 ? OG ? B SER 102 OG 30 1 Y 1 N VAL 65 ? CG1 ? B VAL 103 CG1 31 1 Y 1 N VAL 65 ? CG2 ? B VAL 103 CG2 32 1 Y 1 N LYS 66 ? CG ? B LYS 104 CG 33 1 Y 1 N LYS 66 ? CD ? B LYS 104 CD 34 1 Y 1 N LYS 66 ? CE ? B LYS 104 CE 35 1 Y 1 N LYS 66 ? NZ ? B LYS 104 NZ 36 1 Y 1 N LYS 77 ? CG ? B LYS 115 CG 37 1 Y 1 N LYS 77 ? CD ? B LYS 115 CD 38 1 Y 1 N LYS 77 ? CE ? B LYS 115 CE 39 1 Y 1 N LYS 77 ? NZ ? B LYS 115 NZ 40 1 Y 1 N LYS 88 ? CG ? B LYS 126 CG 41 1 Y 1 N LYS 88 ? CD ? B LYS 126 CD 42 1 Y 1 N LYS 88 ? CE ? B LYS 126 CE 43 1 Y 1 N LYS 88 ? NZ ? B LYS 126 NZ 44 1 Y 1 N VAL 121 ? CG1 ? B VAL 159 CG1 45 1 Y 1 N VAL 121 ? CG2 ? B VAL 159 CG2 46 1 Y 1 N SER 122 ? OG ? B SER 160 OG 47 1 Y 1 N SER 123 ? OG ? B SER 161 OG # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8ZPM _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ZPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ZPM _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8ZPM _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3308 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.580 ? 4516 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.155 ? 467 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.043 ? 524 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 543 ? f_plane_restr ? ? # _struct.entry_id 8ZPM _struct.title 'Cryo-EM strucutre of CXCR4 complexed with antagonist AMD070' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ZPM _struct_keywords.text 'CXC motif chemokine receptor 4, antagonist, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP C562_ECOLX P0ABE7 ? 1 ;ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN EGKVKEAQAAAEQLKTTRNAYHQKY ; 23 2 UNP CXCR4_HUMAN P61073 ? 1 ;MEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL SVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGV WIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIIS ; 1 3 UNP CXCR4_HUMAN P61073 ? 1 TVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTS 241 4 PDB 8ZPM 8ZPM ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ZPM R 27 ? 131 ? P0ABE7 23 ? 127 ? -111 -7 2 2 8ZPM R 139 ? 362 ? P61073 1 ? 224 ? 1 224 3 3 8ZPM R 387 ? 465 ? P61073 241 ? 319 ? 249 327 4 4 8ZPM N 1 ? 169 ? 8ZPM -37 ? 131 ? -37 131 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8ZPM MET R 1 ? UNP P0ABE7 ? ? 'initiating methionine' -137 1 1 8ZPM LYS R 2 ? UNP P0ABE7 ? ? 'expression tag' -136 2 1 8ZPM THR R 3 ? UNP P0ABE7 ? ? 'expression tag' -135 3 1 8ZPM ILE R 4 ? UNP P0ABE7 ? ? 'expression tag' -134 4 1 8ZPM ILE R 5 ? UNP P0ABE7 ? ? 'expression tag' -133 5 1 8ZPM ALA R 6 ? UNP P0ABE7 ? ? 'expression tag' -132 6 1 8ZPM LEU R 7 ? UNP P0ABE7 ? ? 'expression tag' -131 7 1 8ZPM SER R 8 ? UNP P0ABE7 ? ? 'expression tag' -130 8 1 8ZPM TYR R 9 ? UNP P0ABE7 ? ? 'expression tag' -129 9 1 8ZPM ILE R 10 ? UNP P0ABE7 ? ? 'expression tag' -128 10 1 8ZPM PHE R 11 ? UNP P0ABE7 ? ? 'expression tag' -127 11 1 8ZPM CYS R 12 ? UNP P0ABE7 ? ? 'expression tag' -126 12 1 8ZPM LEU R 13 ? UNP P0ABE7 ? ? 'expression tag' -125 13 1 8ZPM VAL R 14 ? UNP P0ABE7 ? ? 'expression tag' -124 14 1 8ZPM PHE R 15 ? UNP P0ABE7 ? ? 'expression tag' -123 15 1 8ZPM ALA R 16 ? UNP P0ABE7 ? ? 'expression tag' -122 16 1 8ZPM ASP R 17 ? UNP P0ABE7 ? ? 'expression tag' -121 17 1 8ZPM TYR R 18 ? UNP P0ABE7 ? ? 'expression tag' -120 18 1 8ZPM LYS R 19 ? UNP P0ABE7 ? ? 'expression tag' -119 19 1 8ZPM ASP R 20 ? UNP P0ABE7 ? ? 'expression tag' -118 20 1 8ZPM ASP R 21 ? UNP P0ABE7 ? ? 'expression tag' -117 21 1 8ZPM ASP R 22 ? UNP P0ABE7 ? ? 'expression tag' -116 22 1 8ZPM ASP R 23 ? UNP P0ABE7 ? ? 'expression tag' -115 23 1 8ZPM LYS R 24 ? UNP P0ABE7 ? ? 'expression tag' -114 24 1 8ZPM GLY R 25 ? UNP P0ABE7 ? ? 'expression tag' -113 25 1 8ZPM SER R 26 ? UNP P0ABE7 ? ? 'expression tag' -112 26 1 8ZPM TRP R 33 ? UNP P0ABE7 MET 29 conflict -105 27 1 8ZPM ILE R 128 ? UNP P0ABE7 HIS 124 conflict -10 28 1 8ZPM LEU R 132 ? UNP P0ABE7 ? ? linker -6 29 1 8ZPM LEU R 133 ? UNP P0ABE7 ? ? linker -5 30 1 8ZPM VAL R 134 ? UNP P0ABE7 ? ? linker -4 31 1 8ZPM PRO R 135 ? UNP P0ABE7 ? ? linker -3 32 1 8ZPM ARG R 136 ? UNP P0ABE7 ? ? linker -2 33 1 8ZPM GLY R 137 ? UNP P0ABE7 ? ? linker -1 34 1 8ZPM SER R 138 ? UNP P0ABE7 ? ? linker 0 35 2 8ZPM TRP R 263 ? UNP P61073 LEU 125 conflict 125 36 2 8ZPM ARG R 363 ? UNP P61073 ? ? linker 225 37 2 8ZPM LEU R 364 ? UNP P61073 ? ? linker 226 38 2 8ZPM LYS R 365 ? UNP P61073 ? ? linker 227 39 2 8ZPM SER R 366 ? UNP P61073 ? ? linker 228 40 2 8ZPM VAL R 367 ? UNP P61073 ? ? linker 229 41 2 8ZPM ARG R 368 ? UNP P61073 ? ? linker 230 42 2 8ZPM LEU R 369 ? UNP P61073 ? ? linker 231 43 2 8ZPM LEU R 370 ? UNP P61073 ? ? linker 232 44 2 8ZPM SER R 371 ? UNP P61073 ? ? linker 233 45 2 8ZPM GLY R 372 ? UNP P61073 ? ? linker 234 46 2 8ZPM SER R 373 ? UNP P61073 ? ? linker 235 47 2 8ZPM ARG R 374 ? UNP P61073 ? ? linker 236 48 2 8ZPM GLU R 375 ? UNP P61073 ? ? linker 237 49 2 8ZPM LYS R 376 ? UNP P61073 ? ? linker 238 50 2 8ZPM ASP R 377 ? UNP P61073 ? ? linker 239 51 2 8ZPM ARG R 378 ? UNP P61073 ? ? linker 240 52 2 8ZPM ASN R 379 ? UNP P61073 ? ? linker 241 53 2 8ZPM LEU R 380 ? UNP P61073 ? ? linker 242 54 2 8ZPM ARG R 381 ? UNP P61073 ? ? linker 243 55 2 8ZPM ARG R 382 ? UNP P61073 ? ? linker 244 56 2 8ZPM ILE R 383 ? UNP P61073 ? ? linker 245 57 2 8ZPM THR R 384 ? UNP P61073 ? ? linker 246 58 2 8ZPM ARG R 385 ? UNP P61073 ? ? linker 247 59 2 8ZPM PRO R 386 ? UNP P61073 ? ? linker 248 60 3 8ZPM GLY R 466 ? UNP P61073 ? ? 'expression tag' 328 61 3 8ZPM ARG R 467 ? UNP P61073 ? ? 'expression tag' 329 62 3 8ZPM PRO R 468 ? UNP P61073 ? ? 'expression tag' 330 63 3 8ZPM LEU R 469 ? UNP P61073 ? ? 'expression tag' 331 64 3 8ZPM GLU R 470 ? UNP P61073 ? ? 'expression tag' 332 65 3 8ZPM VAL R 471 ? UNP P61073 ? ? 'expression tag' 333 66 3 8ZPM LEU R 472 ? UNP P61073 ? ? 'expression tag' 334 67 3 8ZPM PHE R 473 ? UNP P61073 ? ? 'expression tag' 335 68 3 8ZPM GLN R 474 ? UNP P61073 ? ? 'expression tag' 336 69 3 8ZPM GLY R 475 ? UNP P61073 ? ? 'expression tag' 337 70 3 8ZPM PRO R 476 ? UNP P61073 ? ? 'expression tag' 338 71 3 8ZPM HIS R 477 ? UNP P61073 ? ? 'expression tag' 339 72 3 8ZPM HIS R 478 ? UNP P61073 ? ? 'expression tag' 340 73 3 8ZPM HIS R 479 ? UNP P61073 ? ? 'expression tag' 341 74 3 8ZPM HIS R 480 ? UNP P61073 ? ? 'expression tag' 342 75 3 8ZPM HIS R 481 ? UNP P61073 ? ? 'expression tag' 343 76 3 8ZPM HIS R 482 ? UNP P61073 ? ? 'expression tag' 344 77 3 8ZPM HIS R 483 ? UNP P61073 ? ? 'expression tag' 345 78 3 8ZPM HIS R 484 ? UNP P61073 ? ? 'expression tag' 346 79 3 8ZPM HIS R 485 ? UNP P61073 ? ? 'expression tag' 347 80 3 8ZPM HIS R 486 ? UNP P61073 ? ? 'expression tag' 348 81 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 172 ? GLY A 202 ? ALA R 34 GLY R 64 1 ? 31 HELX_P HELX_P2 AA2 SER A 209 ? ILE A 227 ? SER R 71 ILE R 89 1 ? 19 HELX_P HELX_P3 AA3 THR A 228 ? ALA A 238 ? THR R 90 ALA R 100 1 ? 11 HELX_P HELX_P4 AA4 GLY A 243 ? HIS A 278 ? GLY R 105 HIS R 140 1 ? 36 HELX_P HELX_P5 AA5 SER A 282 ? LYS A 292 ? SER R 144 LYS R 154 1 ? 11 HELX_P HELX_P6 AA6 LYS A 292 ? LEU A 305 ? LYS R 154 LEU R 167 1 ? 14 HELX_P HELX_P7 AA7 THR A 306 ? PHE A 312 ? THR R 168 PHE R 174 1 ? 7 HELX_P HELX_P8 AA8 ASN A 330 ? ILE A 347 ? ASN R 192 ILE R 209 1 ? 18 HELX_P HELX_P9 AA9 ILE A 347 ? LYS A 365 ? ILE R 209 LYS R 227 1 ? 19 HELX_P HELX_P10 AB1 SER A 373 ? LEU A 413 ? SER R 235 LEU R 275 1 ? 41 HELX_P HELX_P11 AB2 GLY A 419 ? PHE A 438 ? GLY R 281 PHE R 300 1 ? 20 HELX_P HELX_P12 AB3 PHE A 439 ? CYS A 441 ? PHE R 301 CYS R 303 5 ? 3 HELX_P HELX_P13 AB4 CYS A 442 ? LEU A 451 ? CYS R 304 LEU R 313 1 ? 10 HELX_P HELX_P14 AB5 LYS B 126 ? THR B 130 ? LYS N 88 THR N 92 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 247 SG ? ? ? 1_555 A CYS 324 SG ? ? R CYS 109 R CYS 186 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 62 SG ? ? ? 1_555 B CYS 135 SG ? ? N CYS 24 N CYS 97 1_555 ? ? ? ? ? ? ? 2.031 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 247 ? CYS A 324 ? CYS R 109 ? 1_555 CYS R 186 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 62 ? CYS B 135 ? CYS N 24 ? 1_555 CYS N 97 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? AA3 ? 5 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 313 ? SER A 316 ? ALA R 175 SER R 178 AA1 2 ILE A 323 ? ARG A 326 ? ILE R 185 ARG R 188 AA2 1 VAL B 42 ? SER B 47 ? VAL N 4 SER N 9 AA2 2 LEU B 58 ? GLY B 66 ? LEU N 20 GLY N 28 AA2 3 THR B 117 ? MET B 122 ? THR N 79 MET N 84 AA2 4 THR B 108 ? ASP B 112 ? THR N 70 ASP N 74 AA3 1 GLY B 50 ? LEU B 51 ? GLY N 12 LEU N 13 AA3 2 THR B 155 ? THR B 158 ? THR N 117 THR N 120 AA3 3 VAL B 132 ? ARG B 140 ? VAL N 94 ARG N 102 AA3 4 ARG B 70 ? ARG B 78 ? ARG N 32 ARG N 40 AA3 5 GLU B 86 ? THR B 92 ? GLU N 48 THR N 54 AA4 1 GLY B 50 ? LEU B 51 ? GLY N 12 LEU N 13 AA4 2 THR B 155 ? THR B 158 ? THR N 117 THR N 120 AA4 3 VAL B 132 ? ARG B 140 ? VAL N 94 ARG N 102 AA4 4 LEU B 148 ? TRP B 151 ? LEU N 110 TRP N 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 316 ? N SER R 178 O ILE A 323 ? O ILE R 185 AA2 1 2 N GLN B 43 ? N GLN N 5 O SER B 65 ? O SER N 27 AA2 2 3 N LEU B 60 ? N LEU N 22 O LEU B 120 ? O LEU N 82 AA2 3 4 O GLN B 121 ? O GLN N 83 N THR B 108 ? N THR N 70 AA3 1 2 N GLY B 50 ? N GLY N 12 O THR B 158 ? O THR N 120 AA3 2 3 O THR B 155 ? O THR N 117 N TYR B 133 ? N TYR N 95 AA3 3 4 O ASN B 136 ? O ASN N 98 N GLY B 75 ? N GLY N 37 AA3 4 5 N MET B 74 ? N MET N 36 O ILE B 91 ? O ILE N 53 AA4 1 2 N GLY B 50 ? N GLY N 12 O THR B 158 ? O THR N 120 AA4 2 3 O THR B 155 ? O THR N 117 N TYR B 133 ? N TYR N 95 AA4 3 4 N ALA B 137 ? N ALA N 99 O GLY B 150 ? O GLY N 112 # _pdbx_entry_details.entry_id 8ZPM _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS R 68 ? ? -79.63 -165.68 2 1 ASN R 101 ? ? -172.92 -179.84 3 1 ASP R 182 ? ? 69.76 -5.58 4 1 SER R 233 ? ? 57.57 -123.18 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8ZPM _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8ZPM _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 93558 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name AMD070-CXCR4-KOR-Nb6 _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 8ZPM _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8ZPM _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8ZPM _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R MET -137 ? A MET 1 2 1 Y 1 R LYS -136 ? A LYS 2 3 1 Y 1 R THR -135 ? A THR 3 4 1 Y 1 R ILE -134 ? A ILE 4 5 1 Y 1 R ILE -133 ? A ILE 5 6 1 Y 1 R ALA -132 ? A ALA 6 7 1 Y 1 R LEU -131 ? A LEU 7 8 1 Y 1 R SER -130 ? A SER 8 9 1 Y 1 R TYR -129 ? A TYR 9 10 1 Y 1 R ILE -128 ? A ILE 10 11 1 Y 1 R PHE -127 ? A PHE 11 12 1 Y 1 R CYS -126 ? A CYS 12 13 1 Y 1 R LEU -125 ? A LEU 13 14 1 Y 1 R VAL -124 ? A VAL 14 15 1 Y 1 R PHE -123 ? A PHE 15 16 1 Y 1 R ALA -122 ? A ALA 16 17 1 Y 1 R ASP -121 ? A ASP 17 18 1 Y 1 R TYR -120 ? A TYR 18 19 1 Y 1 R LYS -119 ? A LYS 19 20 1 Y 1 R ASP -118 ? A ASP 20 21 1 Y 1 R ASP -117 ? A ASP 21 22 1 Y 1 R ASP -116 ? A ASP 22 23 1 Y 1 R ASP -115 ? A ASP 23 24 1 Y 1 R LYS -114 ? A LYS 24 25 1 Y 1 R GLY -113 ? A GLY 25 26 1 Y 1 R SER -112 ? A SER 26 27 1 Y 1 R ALA -111 ? A ALA 27 28 1 Y 1 R ASP -110 ? A ASP 28 29 1 Y 1 R LEU -109 ? A LEU 29 30 1 Y 1 R GLU -108 ? A GLU 30 31 1 Y 1 R ASP -107 ? A ASP 31 32 1 Y 1 R ASN -106 ? A ASN 32 33 1 Y 1 R TRP -105 ? A TRP 33 34 1 Y 1 R GLU -104 ? A GLU 34 35 1 Y 1 R THR -103 ? A THR 35 36 1 Y 1 R LEU -102 ? A LEU 36 37 1 Y 1 R ASN -101 ? A ASN 37 38 1 Y 1 R ASP -100 ? A ASP 38 39 1 Y 1 R ASN -99 ? A ASN 39 40 1 Y 1 R LEU -98 ? A LEU 40 41 1 Y 1 R LYS -97 ? A LYS 41 42 1 Y 1 R VAL -96 ? A VAL 42 43 1 Y 1 R ILE -95 ? A ILE 43 44 1 Y 1 R GLU -94 ? A GLU 44 45 1 Y 1 R LYS -93 ? A LYS 45 46 1 Y 1 R ALA -92 ? A ALA 46 47 1 Y 1 R ASP -91 ? A ASP 47 48 1 Y 1 R ASN -90 ? A ASN 48 49 1 Y 1 R ALA -89 ? A ALA 49 50 1 Y 1 R ALA -88 ? A ALA 50 51 1 Y 1 R GLN -87 ? A GLN 51 52 1 Y 1 R VAL -86 ? A VAL 52 53 1 Y 1 R LYS -85 ? A LYS 53 54 1 Y 1 R ASP -84 ? A ASP 54 55 1 Y 1 R ALA -83 ? A ALA 55 56 1 Y 1 R LEU -82 ? A LEU 56 57 1 Y 1 R THR -81 ? A THR 57 58 1 Y 1 R LYS -80 ? A LYS 58 59 1 Y 1 R MET -79 ? A MET 59 60 1 Y 1 R ARG -78 ? A ARG 60 61 1 Y 1 R ALA -77 ? A ALA 61 62 1 Y 1 R ALA -76 ? A ALA 62 63 1 Y 1 R ALA -75 ? A ALA 63 64 1 Y 1 R LEU -74 ? A LEU 64 65 1 Y 1 R ASP -73 ? A ASP 65 66 1 Y 1 R ALA -72 ? A ALA 66 67 1 Y 1 R GLN -71 ? A GLN 67 68 1 Y 1 R LYS -70 ? A LYS 68 69 1 Y 1 R ALA -69 ? A ALA 69 70 1 Y 1 R THR -68 ? A THR 70 71 1 Y 1 R PRO -67 ? A PRO 71 72 1 Y 1 R PRO -66 ? A PRO 72 73 1 Y 1 R LYS -65 ? A LYS 73 74 1 Y 1 R LEU -64 ? A LEU 74 75 1 Y 1 R GLU -63 ? A GLU 75 76 1 Y 1 R ASP -62 ? A ASP 76 77 1 Y 1 R LYS -61 ? A LYS 77 78 1 Y 1 R SER -60 ? A SER 78 79 1 Y 1 R PRO -59 ? A PRO 79 80 1 Y 1 R ASP -58 ? A ASP 80 81 1 Y 1 R SER -57 ? A SER 81 82 1 Y 1 R PRO -56 ? A PRO 82 83 1 Y 1 R GLU -55 ? A GLU 83 84 1 Y 1 R MET -54 ? A MET 84 85 1 Y 1 R LYS -53 ? A LYS 85 86 1 Y 1 R ASP -52 ? A ASP 86 87 1 Y 1 R PHE -51 ? A PHE 87 88 1 Y 1 R ARG -50 ? A ARG 88 89 1 Y 1 R HIS -49 ? A HIS 89 90 1 Y 1 R GLY -48 ? A GLY 90 91 1 Y 1 R PHE -47 ? A PHE 91 92 1 Y 1 R ASP -46 ? A ASP 92 93 1 Y 1 R ILE -45 ? A ILE 93 94 1 Y 1 R LEU -44 ? A LEU 94 95 1 Y 1 R VAL -43 ? A VAL 95 96 1 Y 1 R GLY -42 ? A GLY 96 97 1 Y 1 R GLN -41 ? A GLN 97 98 1 Y 1 R ILE -40 ? A ILE 98 99 1 Y 1 R ASP -39 ? A ASP 99 100 1 Y 1 R ASP -38 ? A ASP 100 101 1 Y 1 R ALA -37 ? A ALA 101 102 1 Y 1 R LEU -36 ? A LEU 102 103 1 Y 1 R LYS -35 ? A LYS 103 104 1 Y 1 R LEU -34 ? A LEU 104 105 1 Y 1 R ALA -33 ? A ALA 105 106 1 Y 1 R ASN -32 ? A ASN 106 107 1 Y 1 R GLU -31 ? A GLU 107 108 1 Y 1 R GLY -30 ? A GLY 108 109 1 Y 1 R LYS -29 ? A LYS 109 110 1 Y 1 R VAL -28 ? A VAL 110 111 1 Y 1 R LYS -27 ? A LYS 111 112 1 Y 1 R GLU -26 ? A GLU 112 113 1 Y 1 R ALA -25 ? A ALA 113 114 1 Y 1 R GLN -24 ? A GLN 114 115 1 Y 1 R ALA -23 ? A ALA 115 116 1 Y 1 R ALA -22 ? A ALA 116 117 1 Y 1 R ALA -21 ? A ALA 117 118 1 Y 1 R GLU -20 ? A GLU 118 119 1 Y 1 R GLN -19 ? A GLN 119 120 1 Y 1 R LEU -18 ? A LEU 120 121 1 Y 1 R LYS -17 ? A LYS 121 122 1 Y 1 R THR -16 ? A THR 122 123 1 Y 1 R THR -15 ? A THR 123 124 1 Y 1 R ARG -14 ? A ARG 124 125 1 Y 1 R ASN -13 ? A ASN 125 126 1 Y 1 R ALA -12 ? A ALA 126 127 1 Y 1 R TYR -11 ? A TYR 127 128 1 Y 1 R ILE -10 ? A ILE 128 129 1 Y 1 R GLN -9 ? A GLN 129 130 1 Y 1 R LYS -8 ? A LYS 130 131 1 Y 1 R TYR -7 ? A TYR 131 132 1 Y 1 R LEU -6 ? A LEU 132 133 1 Y 1 R LEU -5 ? A LEU 133 134 1 Y 1 R VAL -4 ? A VAL 134 135 1 Y 1 R PRO -3 ? A PRO 135 136 1 Y 1 R ARG -2 ? A ARG 136 137 1 Y 1 R GLY -1 ? A GLY 137 138 1 Y 1 R SER 0 ? A SER 138 139 1 Y 1 R MET 1 ? A MET 139 140 1 Y 1 R GLU 2 ? A GLU 140 141 1 Y 1 R GLY 3 ? A GLY 141 142 1 Y 1 R ILE 4 ? A ILE 142 143 1 Y 1 R SER 5 ? A SER 143 144 1 Y 1 R ILE 6 ? A ILE 144 145 1 Y 1 R TYR 7 ? A TYR 145 146 1 Y 1 R THR 8 ? A THR 146 147 1 Y 1 R SER 9 ? A SER 147 148 1 Y 1 R ASP 10 ? A ASP 148 149 1 Y 1 R ASN 11 ? A ASN 149 150 1 Y 1 R TYR 12 ? A TYR 150 151 1 Y 1 R THR 13 ? A THR 151 152 1 Y 1 R GLU 14 ? A GLU 152 153 1 Y 1 R GLU 15 ? A GLU 153 154 1 Y 1 R MET 16 ? A MET 154 155 1 Y 1 R GLY 17 ? A GLY 155 156 1 Y 1 R SER 18 ? A SER 156 157 1 Y 1 R GLY 19 ? A GLY 157 158 1 Y 1 R ASP 20 ? A ASP 158 159 1 Y 1 R TYR 21 ? A TYR 159 160 1 Y 1 R ASP 22 ? A ASP 160 161 1 Y 1 R SER 23 ? A SER 161 162 1 Y 1 R MET 24 ? A MET 162 163 1 Y 1 R LYS 25 ? A LYS 163 164 1 Y 1 R GLU 26 ? A GLU 164 165 1 Y 1 R PRO 27 ? A PRO 165 166 1 Y 1 R CYS 28 ? A CYS 166 167 1 Y 1 R PHE 29 ? A PHE 167 168 1 Y 1 R ARG 30 ? A ARG 168 169 1 Y 1 R GLU 31 ? A GLU 169 170 1 Y 1 R GLU 32 ? A GLU 170 171 1 Y 1 R ASN 33 ? A ASN 171 172 1 Y 1 R LYS 316 ? A LYS 454 173 1 Y 1 R PHE 317 ? A PHE 455 174 1 Y 1 R LYS 318 ? A LYS 456 175 1 Y 1 R THR 319 ? A THR 457 176 1 Y 1 R SER 320 ? A SER 458 177 1 Y 1 R ALA 321 ? A ALA 459 178 1 Y 1 R GLN 322 ? A GLN 460 179 1 Y 1 R HIS 323 ? A HIS 461 180 1 Y 1 R ALA 324 ? A ALA 462 181 1 Y 1 R LEU 325 ? A LEU 463 182 1 Y 1 R THR 326 ? A THR 464 183 1 Y 1 R SER 327 ? A SER 465 184 1 Y 1 R GLY 328 ? A GLY 466 185 1 Y 1 R ARG 329 ? A ARG 467 186 1 Y 1 R PRO 330 ? A PRO 468 187 1 Y 1 R LEU 331 ? A LEU 469 188 1 Y 1 R GLU 332 ? A GLU 470 189 1 Y 1 R VAL 333 ? A VAL 471 190 1 Y 1 R LEU 334 ? A LEU 472 191 1 Y 1 R PHE 335 ? A PHE 473 192 1 Y 1 R GLN 336 ? A GLN 474 193 1 Y 1 R GLY 337 ? A GLY 475 194 1 Y 1 R PRO 338 ? A PRO 476 195 1 Y 1 R HIS 339 ? A HIS 477 196 1 Y 1 R HIS 340 ? A HIS 478 197 1 Y 1 R HIS 341 ? A HIS 479 198 1 Y 1 R HIS 342 ? A HIS 480 199 1 Y 1 R HIS 343 ? A HIS 481 200 1 Y 1 R HIS 344 ? A HIS 482 201 1 Y 1 R HIS 345 ? A HIS 483 202 1 Y 1 R HIS 346 ? A HIS 484 203 1 Y 1 R HIS 347 ? A HIS 485 204 1 Y 1 R HIS 348 ? A HIS 486 205 1 Y 1 N MET -37 ? B MET 1 206 1 Y 1 N LEU -36 ? B LEU 2 207 1 Y 1 N LEU -35 ? B LEU 3 208 1 Y 1 N VAL -34 ? B VAL 4 209 1 Y 1 N ASN -33 ? B ASN 5 210 1 Y 1 N GLN -32 ? B GLN 6 211 1 Y 1 N SER -31 ? B SER 7 212 1 Y 1 N HIS -30 ? B HIS 8 213 1 Y 1 N GLN -29 ? B GLN 9 214 1 Y 1 N GLY -28 ? B GLY 10 215 1 Y 1 N PHE -27 ? B PHE 11 216 1 Y 1 N ASN -26 ? B ASN 12 217 1 Y 1 N LYS -25 ? B LYS 13 218 1 Y 1 N GLU -24 ? B GLU 14 219 1 Y 1 N HIS -23 ? B HIS 15 220 1 Y 1 N THR -22 ? B THR 16 221 1 Y 1 N SER -21 ? B SER 17 222 1 Y 1 N LYS -20 ? B LYS 18 223 1 Y 1 N MET -19 ? B MET 19 224 1 Y 1 N VAL -18 ? B VAL 20 225 1 Y 1 N SER -17 ? B SER 21 226 1 Y 1 N ALA -16 ? B ALA 22 227 1 Y 1 N ILE -15 ? B ILE 23 228 1 Y 1 N VAL -14 ? B VAL 24 229 1 Y 1 N LEU -13 ? B LEU 25 230 1 Y 1 N TYR -12 ? B TYR 26 231 1 Y 1 N VAL -11 ? B VAL 27 232 1 Y 1 N LEU -10 ? B LEU 28 233 1 Y 1 N LEU -9 ? B LEU 29 234 1 Y 1 N ALA -8 ? B ALA 30 235 1 Y 1 N ALA -7 ? B ALA 31 236 1 Y 1 N ALA -6 ? B ALA 32 237 1 Y 1 N ALA -5 ? B ALA 33 238 1 Y 1 N HIS -4 ? B HIS 34 239 1 Y 1 N SER -3 ? B SER 35 240 1 Y 1 N ALA -2 ? B ALA 36 241 1 Y 1 N PHE -1 ? B PHE 37 242 1 Y 1 N ALA 0 ? B ALA 38 243 1 Y 1 N MET 1 ? B MET 39 244 1 Y 1 N ALA 2 ? B ALA 40 245 1 Y 1 N ARG 41 ? B ARG 79 246 1 Y 1 N VAL 42 ? B VAL 80 247 1 Y 1 N SER 43 ? B SER 81 248 1 Y 1 N GLY 44 ? B GLY 82 249 1 Y 1 N ASN 45 ? B ASN 83 250 1 Y 1 N HIS 124 ? B HIS 162 251 1 Y 1 N HIS 125 ? B HIS 163 252 1 Y 1 N HIS 126 ? B HIS 164 253 1 Y 1 N HIS 127 ? B HIS 165 254 1 Y 1 N HIS 128 ? B HIS 166 255 1 Y 1 N HIS 129 ? B HIS 167 256 1 Y 1 N HIS 130 ? B HIS 168 257 1 Y 1 N HIS 131 ? B HIS 169 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1D8L C14 C N N 1 A1D8L C15 C Y N 2 A1D8L C16 C Y N 3 A1D8L C17 C Y N 4 A1D8L C18 C Y N 5 A1D8L C19 C Y N 6 A1D8L C20 C Y N 7 A1D8L C21 C Y N 8 A1D8L N2 N N N 9 A1D8L C1 C N N 10 A1D8L C10 C N N 11 A1D8L C11 C N N 12 A1D8L C12 C N N 13 A1D8L C13 C N N 14 A1D8L C2 C N N 15 A1D8L C3 C N S 16 A1D8L C4 C Y N 17 A1D8L C5 C Y N 18 A1D8L C6 C N N 19 A1D8L C7 C Y N 20 A1D8L C8 C Y N 21 A1D8L C9 C Y N 22 A1D8L N1 N Y N 23 A1D8L N3 N N N 24 A1D8L N4 N Y N 25 A1D8L N5 N Y N 26 A1D8L H1 H N N 27 A1D8L H2 H N N 28 A1D8L H3 H N N 29 A1D8L H4 H N N 30 A1D8L H5 H N N 31 A1D8L H6 H N N 32 A1D8L H8 H N N 33 A1D8L H9 H N N 34 A1D8L H10 H N N 35 A1D8L H11 H N N 36 A1D8L H12 H N N 37 A1D8L H13 H N N 38 A1D8L H14 H N N 39 A1D8L H15 H N N 40 A1D8L H16 H N N 41 A1D8L H17 H N N 42 A1D8L H18 H N N 43 A1D8L H19 H N N 44 A1D8L H20 H N N 45 A1D8L H21 H N N 46 A1D8L H22 H N N 47 A1D8L H23 H N N 48 A1D8L H24 H N N 49 A1D8L H25 H N N 50 A1D8L H26 H N N 51 A1D8L H27 H N N 52 A1D8L H30 H N N 53 ALA N N N N 54 ALA CA C N S 55 ALA C C N N 56 ALA O O N N 57 ALA CB C N N 58 ALA OXT O N N 59 ALA H H N N 60 ALA H2 H N N 61 ALA HA H N N 62 ALA HB1 H N N 63 ALA HB2 H N N 64 ALA HB3 H N N 65 ALA HXT H N N 66 ARG N N N N 67 ARG CA C N S 68 ARG C C N N 69 ARG O O N N 70 ARG CB C N N 71 ARG CG C N N 72 ARG CD C N N 73 ARG NE N N N 74 ARG CZ C N N 75 ARG NH1 N N N 76 ARG NH2 N N N 77 ARG OXT O N N 78 ARG H H N N 79 ARG H2 H N N 80 ARG HA H N N 81 ARG HB2 H N N 82 ARG HB3 H N N 83 ARG HG2 H N N 84 ARG HG3 H N N 85 ARG HD2 H N N 86 ARG HD3 H N N 87 ARG HE H N N 88 ARG HH11 H N N 89 ARG HH12 H N N 90 ARG HH21 H N N 91 ARG HH22 H N N 92 ARG HXT H N N 93 ASN N N N N 94 ASN CA C N S 95 ASN C C N N 96 ASN O O N N 97 ASN CB C N N 98 ASN CG C N N 99 ASN OD1 O N N 100 ASN ND2 N N N 101 ASN OXT O N N 102 ASN H H N N 103 ASN H2 H N N 104 ASN HA H N N 105 ASN HB2 H N N 106 ASN HB3 H N N 107 ASN HD21 H N N 108 ASN HD22 H N N 109 ASN HXT H N N 110 ASP N N N N 111 ASP CA C N S 112 ASP C C N N 113 ASP O O N N 114 ASP CB C N N 115 ASP CG C N N 116 ASP OD1 O N N 117 ASP OD2 O N N 118 ASP OXT O N N 119 ASP H H N N 120 ASP H2 H N N 121 ASP HA H N N 122 ASP HB2 H N N 123 ASP HB3 H N N 124 ASP HD2 H N N 125 ASP HXT H N N 126 CLR C1 C N N 127 CLR C2 C N N 128 CLR C3 C N S 129 CLR C4 C N N 130 CLR C5 C N N 131 CLR C6 C N N 132 CLR C7 C N N 133 CLR C8 C N S 134 CLR C9 C N S 135 CLR C10 C N R 136 CLR C11 C N N 137 CLR C12 C N N 138 CLR C13 C N R 139 CLR C14 C N S 140 CLR C15 C N N 141 CLR C16 C N N 142 CLR C17 C N R 143 CLR C18 C N N 144 CLR C19 C N N 145 CLR C20 C N R 146 CLR C21 C N N 147 CLR C22 C N N 148 CLR C23 C N N 149 CLR C24 C N N 150 CLR C25 C N N 151 CLR C26 C N N 152 CLR C27 C N N 153 CLR O1 O N N 154 CLR H11 H N N 155 CLR H12 H N N 156 CLR H21 H N N 157 CLR H22 H N N 158 CLR H3 H N N 159 CLR H41 H N N 160 CLR H42 H N N 161 CLR H6 H N N 162 CLR H71 H N N 163 CLR H72 H N N 164 CLR H8 H N N 165 CLR H9 H N N 166 CLR H111 H N N 167 CLR H112 H N N 168 CLR H121 H N N 169 CLR H122 H N N 170 CLR H14 H N N 171 CLR H151 H N N 172 CLR H152 H N N 173 CLR H161 H N N 174 CLR H162 H N N 175 CLR H17 H N N 176 CLR H181 H N N 177 CLR H182 H N N 178 CLR H183 H N N 179 CLR H191 H N N 180 CLR H192 H N N 181 CLR H193 H N N 182 CLR H20 H N N 183 CLR H211 H N N 184 CLR H212 H N N 185 CLR H213 H N N 186 CLR H221 H N N 187 CLR H222 H N N 188 CLR H231 H N N 189 CLR H232 H N N 190 CLR H241 H N N 191 CLR H242 H N N 192 CLR H25 H N N 193 CLR H261 H N N 194 CLR H262 H N N 195 CLR H263 H N N 196 CLR H271 H N N 197 CLR H272 H N N 198 CLR H273 H N N 199 CLR H1 H N N 200 CYS N N N N 201 CYS CA C N R 202 CYS C C N N 203 CYS O O N N 204 CYS CB C N N 205 CYS SG S N N 206 CYS OXT O N N 207 CYS H H N N 208 CYS H2 H N N 209 CYS HA H N N 210 CYS HB2 H N N 211 CYS HB3 H N N 212 CYS HG H N N 213 CYS HXT H N N 214 GLN N N N N 215 GLN CA C N S 216 GLN C C N N 217 GLN O O N N 218 GLN CB C N N 219 GLN CG C N N 220 GLN CD C N N 221 GLN OE1 O N N 222 GLN NE2 N N N 223 GLN OXT O N N 224 GLN H H N N 225 GLN H2 H N N 226 GLN HA H N N 227 GLN HB2 H N N 228 GLN HB3 H N N 229 GLN HG2 H N N 230 GLN HG3 H N N 231 GLN HE21 H N N 232 GLN HE22 H N N 233 GLN HXT H N N 234 GLU N N N N 235 GLU CA C N S 236 GLU C C N N 237 GLU O O N N 238 GLU CB C N N 239 GLU CG C N N 240 GLU CD C N N 241 GLU OE1 O N N 242 GLU OE2 O N N 243 GLU OXT O N N 244 GLU H H N N 245 GLU H2 H N N 246 GLU HA H N N 247 GLU HB2 H N N 248 GLU HB3 H N N 249 GLU HG2 H N N 250 GLU HG3 H N N 251 GLU HE2 H N N 252 GLU HXT H N N 253 GLY N N N N 254 GLY CA C N N 255 GLY C C N N 256 GLY O O N N 257 GLY OXT O N N 258 GLY H H N N 259 GLY H2 H N N 260 GLY HA2 H N N 261 GLY HA3 H N N 262 GLY HXT H N N 263 HIS N N N N 264 HIS CA C N S 265 HIS C C N N 266 HIS O O N N 267 HIS CB C N N 268 HIS CG C Y N 269 HIS ND1 N Y N 270 HIS CD2 C Y N 271 HIS CE1 C Y N 272 HIS NE2 N Y N 273 HIS OXT O N N 274 HIS H H N N 275 HIS H2 H N N 276 HIS HA H N N 277 HIS HB2 H N N 278 HIS HB3 H N N 279 HIS HD1 H N N 280 HIS HD2 H N N 281 HIS HE1 H N N 282 HIS HE2 H N N 283 HIS HXT H N N 284 ILE N N N N 285 ILE CA C N S 286 ILE C C N N 287 ILE O O N N 288 ILE CB C N S 289 ILE CG1 C N N 290 ILE CG2 C N N 291 ILE CD1 C N N 292 ILE OXT O N N 293 ILE H H N N 294 ILE H2 H N N 295 ILE HA H N N 296 ILE HB H N N 297 ILE HG12 H N N 298 ILE HG13 H N N 299 ILE HG21 H N N 300 ILE HG22 H N N 301 ILE HG23 H N N 302 ILE HD11 H N N 303 ILE HD12 H N N 304 ILE HD13 H N N 305 ILE HXT H N N 306 LEU N N N N 307 LEU CA C N S 308 LEU C C N N 309 LEU O O N N 310 LEU CB C N N 311 LEU CG C N N 312 LEU CD1 C N N 313 LEU CD2 C N N 314 LEU OXT O N N 315 LEU H H N N 316 LEU H2 H N N 317 LEU HA H N N 318 LEU HB2 H N N 319 LEU HB3 H N N 320 LEU HG H N N 321 LEU HD11 H N N 322 LEU HD12 H N N 323 LEU HD13 H N N 324 LEU HD21 H N N 325 LEU HD22 H N N 326 LEU HD23 H N N 327 LEU HXT H N N 328 LYS N N N N 329 LYS CA C N S 330 LYS C C N N 331 LYS O O N N 332 LYS CB C N N 333 LYS CG C N N 334 LYS CD C N N 335 LYS CE C N N 336 LYS NZ N N N 337 LYS OXT O N N 338 LYS H H N N 339 LYS H2 H N N 340 LYS HA H N N 341 LYS HB2 H N N 342 LYS HB3 H N N 343 LYS HG2 H N N 344 LYS HG3 H N N 345 LYS HD2 H N N 346 LYS HD3 H N N 347 LYS HE2 H N N 348 LYS HE3 H N N 349 LYS HZ1 H N N 350 LYS HZ2 H N N 351 LYS HZ3 H N N 352 LYS HXT H N N 353 MET N N N N 354 MET CA C N S 355 MET C C N N 356 MET O O N N 357 MET CB C N N 358 MET CG C N N 359 MET SD S N N 360 MET CE C N N 361 MET OXT O N N 362 MET H H N N 363 MET H2 H N N 364 MET HA H N N 365 MET HB2 H N N 366 MET HB3 H N N 367 MET HG2 H N N 368 MET HG3 H N N 369 MET HE1 H N N 370 MET HE2 H N N 371 MET HE3 H N N 372 MET HXT H N N 373 PHE N N N N 374 PHE CA C N S 375 PHE C C N N 376 PHE O O N N 377 PHE CB C N N 378 PHE CG C Y N 379 PHE CD1 C Y N 380 PHE CD2 C Y N 381 PHE CE1 C Y N 382 PHE CE2 C Y N 383 PHE CZ C Y N 384 PHE OXT O N N 385 PHE H H N N 386 PHE H2 H N N 387 PHE HA H N N 388 PHE HB2 H N N 389 PHE HB3 H N N 390 PHE HD1 H N N 391 PHE HD2 H N N 392 PHE HE1 H N N 393 PHE HE2 H N N 394 PHE HZ H N N 395 PHE HXT H N N 396 PRO N N N N 397 PRO CA C N S 398 PRO C C N N 399 PRO O O N N 400 PRO CB C N N 401 PRO CG C N N 402 PRO CD C N N 403 PRO OXT O N N 404 PRO H H N N 405 PRO HA H N N 406 PRO HB2 H N N 407 PRO HB3 H N N 408 PRO HG2 H N N 409 PRO HG3 H N N 410 PRO HD2 H N N 411 PRO HD3 H N N 412 PRO HXT H N N 413 SER N N N N 414 SER CA C N S 415 SER C C N N 416 SER O O N N 417 SER CB C N N 418 SER OG O N N 419 SER OXT O N N 420 SER H H N N 421 SER H2 H N N 422 SER HA H N N 423 SER HB2 H N N 424 SER HB3 H N N 425 SER HG H N N 426 SER HXT H N N 427 THR N N N N 428 THR CA C N S 429 THR C C N N 430 THR O O N N 431 THR CB C N R 432 THR OG1 O N N 433 THR CG2 C N N 434 THR OXT O N N 435 THR H H N N 436 THR H2 H N N 437 THR HA H N N 438 THR HB H N N 439 THR HG1 H N N 440 THR HG21 H N N 441 THR HG22 H N N 442 THR HG23 H N N 443 THR HXT H N N 444 TRP N N N N 445 TRP CA C N S 446 TRP C C N N 447 TRP O O N N 448 TRP CB C N N 449 TRP CG C Y N 450 TRP CD1 C Y N 451 TRP CD2 C Y N 452 TRP NE1 N Y N 453 TRP CE2 C Y N 454 TRP CE3 C Y N 455 TRP CZ2 C Y N 456 TRP CZ3 C Y N 457 TRP CH2 C Y N 458 TRP OXT O N N 459 TRP H H N N 460 TRP H2 H N N 461 TRP HA H N N 462 TRP HB2 H N N 463 TRP HB3 H N N 464 TRP HD1 H N N 465 TRP HE1 H N N 466 TRP HE3 H N N 467 TRP HZ2 H N N 468 TRP HZ3 H N N 469 TRP HH2 H N N 470 TRP HXT H N N 471 TYR N N N N 472 TYR CA C N S 473 TYR C C N N 474 TYR O O N N 475 TYR CB C N N 476 TYR CG C Y N 477 TYR CD1 C Y N 478 TYR CD2 C Y N 479 TYR CE1 C Y N 480 TYR CE2 C Y N 481 TYR CZ C Y N 482 TYR OH O N N 483 TYR OXT O N N 484 TYR H H N N 485 TYR H2 H N N 486 TYR HA H N N 487 TYR HB2 H N N 488 TYR HB3 H N N 489 TYR HD1 H N N 490 TYR HD2 H N N 491 TYR HE1 H N N 492 TYR HE2 H N N 493 TYR HH H N N 494 TYR HXT H N N 495 VAL N N N N 496 VAL CA C N S 497 VAL C C N N 498 VAL O O N N 499 VAL CB C N N 500 VAL CG1 C N N 501 VAL CG2 C N N 502 VAL OXT O N N 503 VAL H H N N 504 VAL H2 H N N 505 VAL HA H N N 506 VAL HB H N N 507 VAL HG11 H N N 508 VAL HG12 H N N 509 VAL HG13 H N N 510 VAL HG21 H N N 511 VAL HG22 H N N 512 VAL HG23 H N N 513 VAL HXT H N N 514 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D8L N3 C13 sing N N 1 A1D8L C13 C12 sing N N 2 A1D8L C12 C11 sing N N 3 A1D8L C11 C10 sing N N 4 A1D8L C10 N2 sing N N 5 A1D8L C2 C1 sing N N 6 A1D8L C2 C3 sing N N 7 A1D8L N2 C14 sing N N 8 A1D8L N2 C3 sing N N 9 A1D8L C1 C6 sing N N 10 A1D8L C14 C15 sing N N 11 A1D8L C6 C5 sing N N 12 A1D8L C5 C7 doub Y N 13 A1D8L C5 C4 sing Y N 14 A1D8L C7 C8 sing Y N 15 A1D8L C8 C9 doub Y N 16 A1D8L C3 C4 sing N N 17 A1D8L C4 N1 doub Y N 18 A1D8L C9 N1 sing Y N 19 A1D8L N4 C15 doub Y N 20 A1D8L N4 C16 sing Y N 21 A1D8L C15 N5 sing Y N 22 A1D8L C16 C17 doub Y N 23 A1D8L C16 C21 sing Y N 24 A1D8L N5 C21 sing Y N 25 A1D8L C17 C18 sing Y N 26 A1D8L C21 C20 doub Y N 27 A1D8L C18 C19 doub Y N 28 A1D8L C20 C19 sing Y N 29 A1D8L C14 H1 sing N N 30 A1D8L C14 H2 sing N N 31 A1D8L C17 H3 sing N N 32 A1D8L C18 H4 sing N N 33 A1D8L C19 H5 sing N N 34 A1D8L C20 H6 sing N N 35 A1D8L C1 H8 sing N N 36 A1D8L C1 H9 sing N N 37 A1D8L C10 H10 sing N N 38 A1D8L C10 H11 sing N N 39 A1D8L C11 H12 sing N N 40 A1D8L C11 H13 sing N N 41 A1D8L C12 H14 sing N N 42 A1D8L C12 H15 sing N N 43 A1D8L C13 H16 sing N N 44 A1D8L C13 H17 sing N N 45 A1D8L C2 H18 sing N N 46 A1D8L C2 H19 sing N N 47 A1D8L C3 H20 sing N N 48 A1D8L C6 H21 sing N N 49 A1D8L C6 H22 sing N N 50 A1D8L C7 H23 sing N N 51 A1D8L C8 H24 sing N N 52 A1D8L C9 H25 sing N N 53 A1D8L N3 H26 sing N N 54 A1D8L N3 H27 sing N N 55 A1D8L N5 H30 sing N N 56 ALA N CA sing N N 57 ALA N H sing N N 58 ALA N H2 sing N N 59 ALA CA C sing N N 60 ALA CA CB sing N N 61 ALA CA HA sing N N 62 ALA C O doub N N 63 ALA C OXT sing N N 64 ALA CB HB1 sing N N 65 ALA CB HB2 sing N N 66 ALA CB HB3 sing N N 67 ALA OXT HXT sing N N 68 ARG N CA sing N N 69 ARG N H sing N N 70 ARG N H2 sing N N 71 ARG CA C sing N N 72 ARG CA CB sing N N 73 ARG CA HA sing N N 74 ARG C O doub N N 75 ARG C OXT sing N N 76 ARG CB CG sing N N 77 ARG CB HB2 sing N N 78 ARG CB HB3 sing N N 79 ARG CG CD sing N N 80 ARG CG HG2 sing N N 81 ARG CG HG3 sing N N 82 ARG CD NE sing N N 83 ARG CD HD2 sing N N 84 ARG CD HD3 sing N N 85 ARG NE CZ sing N N 86 ARG NE HE sing N N 87 ARG CZ NH1 sing N N 88 ARG CZ NH2 doub N N 89 ARG NH1 HH11 sing N N 90 ARG NH1 HH12 sing N N 91 ARG NH2 HH21 sing N N 92 ARG NH2 HH22 sing N N 93 ARG OXT HXT sing N N 94 ASN N CA sing N N 95 ASN N H sing N N 96 ASN N H2 sing N N 97 ASN CA C sing N N 98 ASN CA CB sing N N 99 ASN CA HA sing N N 100 ASN C O doub N N 101 ASN C OXT sing N N 102 ASN CB CG sing N N 103 ASN CB HB2 sing N N 104 ASN CB HB3 sing N N 105 ASN CG OD1 doub N N 106 ASN CG ND2 sing N N 107 ASN ND2 HD21 sing N N 108 ASN ND2 HD22 sing N N 109 ASN OXT HXT sing N N 110 ASP N CA sing N N 111 ASP N H sing N N 112 ASP N H2 sing N N 113 ASP CA C sing N N 114 ASP CA CB sing N N 115 ASP CA HA sing N N 116 ASP C O doub N N 117 ASP C OXT sing N N 118 ASP CB CG sing N N 119 ASP CB HB2 sing N N 120 ASP CB HB3 sing N N 121 ASP CG OD1 doub N N 122 ASP CG OD2 sing N N 123 ASP OD2 HD2 sing N N 124 ASP OXT HXT sing N N 125 CLR C1 C2 sing N N 126 CLR C1 C10 sing N N 127 CLR C1 H11 sing N N 128 CLR C1 H12 sing N N 129 CLR C2 C3 sing N N 130 CLR C2 H21 sing N N 131 CLR C2 H22 sing N N 132 CLR C3 C4 sing N N 133 CLR C3 O1 sing N N 134 CLR C3 H3 sing N N 135 CLR C4 C5 sing N N 136 CLR C4 H41 sing N N 137 CLR C4 H42 sing N N 138 CLR C5 C6 doub N N 139 CLR C5 C10 sing N N 140 CLR C6 C7 sing N N 141 CLR C6 H6 sing N N 142 CLR C7 C8 sing N N 143 CLR C7 H71 sing N N 144 CLR C7 H72 sing N N 145 CLR C8 C9 sing N N 146 CLR C8 C14 sing N N 147 CLR C8 H8 sing N N 148 CLR C9 C10 sing N N 149 CLR C9 C11 sing N N 150 CLR C9 H9 sing N N 151 CLR C10 C19 sing N N 152 CLR C11 C12 sing N N 153 CLR C11 H111 sing N N 154 CLR C11 H112 sing N N 155 CLR C12 C13 sing N N 156 CLR C12 H121 sing N N 157 CLR C12 H122 sing N N 158 CLR C13 C14 sing N N 159 CLR C13 C17 sing N N 160 CLR C13 C18 sing N N 161 CLR C14 C15 sing N N 162 CLR C14 H14 sing N N 163 CLR C15 C16 sing N N 164 CLR C15 H151 sing N N 165 CLR C15 H152 sing N N 166 CLR C16 C17 sing N N 167 CLR C16 H161 sing N N 168 CLR C16 H162 sing N N 169 CLR C17 C20 sing N N 170 CLR C17 H17 sing N N 171 CLR C18 H181 sing N N 172 CLR C18 H182 sing N N 173 CLR C18 H183 sing N N 174 CLR C19 H191 sing N N 175 CLR C19 H192 sing N N 176 CLR C19 H193 sing N N 177 CLR C20 C21 sing N N 178 CLR C20 C22 sing N N 179 CLR C20 H20 sing N N 180 CLR C21 H211 sing N N 181 CLR C21 H212 sing N N 182 CLR C21 H213 sing N N 183 CLR C22 C23 sing N N 184 CLR C22 H221 sing N N 185 CLR C22 H222 sing N N 186 CLR C23 C24 sing N N 187 CLR C23 H231 sing N N 188 CLR C23 H232 sing N N 189 CLR C24 C25 sing N N 190 CLR C24 H241 sing N N 191 CLR C24 H242 sing N N 192 CLR C25 C26 sing N N 193 CLR C25 C27 sing N N 194 CLR C25 H25 sing N N 195 CLR C26 H261 sing N N 196 CLR C26 H262 sing N N 197 CLR C26 H263 sing N N 198 CLR C27 H271 sing N N 199 CLR C27 H272 sing N N 200 CLR C27 H273 sing N N 201 CLR O1 H1 sing N N 202 CYS N CA sing N N 203 CYS N H sing N N 204 CYS N H2 sing N N 205 CYS CA C sing N N 206 CYS CA CB sing N N 207 CYS CA HA sing N N 208 CYS C O doub N N 209 CYS C OXT sing N N 210 CYS CB SG sing N N 211 CYS CB HB2 sing N N 212 CYS CB HB3 sing N N 213 CYS SG HG sing N N 214 CYS OXT HXT sing N N 215 GLN N CA sing N N 216 GLN N H sing N N 217 GLN N H2 sing N N 218 GLN CA C sing N N 219 GLN CA CB sing N N 220 GLN CA HA sing N N 221 GLN C O doub N N 222 GLN C OXT sing N N 223 GLN CB CG sing N N 224 GLN CB HB2 sing N N 225 GLN CB HB3 sing N N 226 GLN CG CD sing N N 227 GLN CG HG2 sing N N 228 GLN CG HG3 sing N N 229 GLN CD OE1 doub N N 230 GLN CD NE2 sing N N 231 GLN NE2 HE21 sing N N 232 GLN NE2 HE22 sing N N 233 GLN OXT HXT sing N N 234 GLU N CA sing N N 235 GLU N H sing N N 236 GLU N H2 sing N N 237 GLU CA C sing N N 238 GLU CA CB sing N N 239 GLU CA HA sing N N 240 GLU C O doub N N 241 GLU C OXT sing N N 242 GLU CB CG sing N N 243 GLU CB HB2 sing N N 244 GLU CB HB3 sing N N 245 GLU CG CD sing N N 246 GLU CG HG2 sing N N 247 GLU CG HG3 sing N N 248 GLU CD OE1 doub N N 249 GLU CD OE2 sing N N 250 GLU OE2 HE2 sing N N 251 GLU OXT HXT sing N N 252 GLY N CA sing N N 253 GLY N H sing N N 254 GLY N H2 sing N N 255 GLY CA C sing N N 256 GLY CA HA2 sing N N 257 GLY CA HA3 sing N N 258 GLY C O doub N N 259 GLY C OXT sing N N 260 GLY OXT HXT sing N N 261 HIS N CA sing N N 262 HIS N H sing N N 263 HIS N H2 sing N N 264 HIS CA C sing N N 265 HIS CA CB sing N N 266 HIS CA HA sing N N 267 HIS C O doub N N 268 HIS C OXT sing N N 269 HIS CB CG sing N N 270 HIS CB HB2 sing N N 271 HIS CB HB3 sing N N 272 HIS CG ND1 sing Y N 273 HIS CG CD2 doub Y N 274 HIS ND1 CE1 doub Y N 275 HIS ND1 HD1 sing N N 276 HIS CD2 NE2 sing Y N 277 HIS CD2 HD2 sing N N 278 HIS CE1 NE2 sing Y N 279 HIS CE1 HE1 sing N N 280 HIS NE2 HE2 sing N N 281 HIS OXT HXT sing N N 282 ILE N CA sing N N 283 ILE N H sing N N 284 ILE N H2 sing N N 285 ILE CA C sing N N 286 ILE CA CB sing N N 287 ILE CA HA sing N N 288 ILE C O doub N N 289 ILE C OXT sing N N 290 ILE CB CG1 sing N N 291 ILE CB CG2 sing N N 292 ILE CB HB sing N N 293 ILE CG1 CD1 sing N N 294 ILE CG1 HG12 sing N N 295 ILE CG1 HG13 sing N N 296 ILE CG2 HG21 sing N N 297 ILE CG2 HG22 sing N N 298 ILE CG2 HG23 sing N N 299 ILE CD1 HD11 sing N N 300 ILE CD1 HD12 sing N N 301 ILE CD1 HD13 sing N N 302 ILE OXT HXT sing N N 303 LEU N CA sing N N 304 LEU N H sing N N 305 LEU N H2 sing N N 306 LEU CA C sing N N 307 LEU CA CB sing N N 308 LEU CA HA sing N N 309 LEU C O doub N N 310 LEU C OXT sing N N 311 LEU CB CG sing N N 312 LEU CB HB2 sing N N 313 LEU CB HB3 sing N N 314 LEU CG CD1 sing N N 315 LEU CG CD2 sing N N 316 LEU CG HG sing N N 317 LEU CD1 HD11 sing N N 318 LEU CD1 HD12 sing N N 319 LEU CD1 HD13 sing N N 320 LEU CD2 HD21 sing N N 321 LEU CD2 HD22 sing N N 322 LEU CD2 HD23 sing N N 323 LEU OXT HXT sing N N 324 LYS N CA sing N N 325 LYS N H sing N N 326 LYS N H2 sing N N 327 LYS CA C sing N N 328 LYS CA CB sing N N 329 LYS CA HA sing N N 330 LYS C O doub N N 331 LYS C OXT sing N N 332 LYS CB CG sing N N 333 LYS CB HB2 sing N N 334 LYS CB HB3 sing N N 335 LYS CG CD sing N N 336 LYS CG HG2 sing N N 337 LYS CG HG3 sing N N 338 LYS CD CE sing N N 339 LYS CD HD2 sing N N 340 LYS CD HD3 sing N N 341 LYS CE NZ sing N N 342 LYS CE HE2 sing N N 343 LYS CE HE3 sing N N 344 LYS NZ HZ1 sing N N 345 LYS NZ HZ2 sing N N 346 LYS NZ HZ3 sing N N 347 LYS OXT HXT sing N N 348 MET N CA sing N N 349 MET N H sing N N 350 MET N H2 sing N N 351 MET CA C sing N N 352 MET CA CB sing N N 353 MET CA HA sing N N 354 MET C O doub N N 355 MET C OXT sing N N 356 MET CB CG sing N N 357 MET CB HB2 sing N N 358 MET CB HB3 sing N N 359 MET CG SD sing N N 360 MET CG HG2 sing N N 361 MET CG HG3 sing N N 362 MET SD CE sing N N 363 MET CE HE1 sing N N 364 MET CE HE2 sing N N 365 MET CE HE3 sing N N 366 MET OXT HXT sing N N 367 PHE N CA sing N N 368 PHE N H sing N N 369 PHE N H2 sing N N 370 PHE CA C sing N N 371 PHE CA CB sing N N 372 PHE CA HA sing N N 373 PHE C O doub N N 374 PHE C OXT sing N N 375 PHE CB CG sing N N 376 PHE CB HB2 sing N N 377 PHE CB HB3 sing N N 378 PHE CG CD1 doub Y N 379 PHE CG CD2 sing Y N 380 PHE CD1 CE1 sing Y N 381 PHE CD1 HD1 sing N N 382 PHE CD2 CE2 doub Y N 383 PHE CD2 HD2 sing N N 384 PHE CE1 CZ doub Y N 385 PHE CE1 HE1 sing N N 386 PHE CE2 CZ sing Y N 387 PHE CE2 HE2 sing N N 388 PHE CZ HZ sing N N 389 PHE OXT HXT sing N N 390 PRO N CA sing N N 391 PRO N CD sing N N 392 PRO N H sing N N 393 PRO CA C sing N N 394 PRO CA CB sing N N 395 PRO CA HA sing N N 396 PRO C O doub N N 397 PRO C OXT sing N N 398 PRO CB CG sing N N 399 PRO CB HB2 sing N N 400 PRO CB HB3 sing N N 401 PRO CG CD sing N N 402 PRO CG HG2 sing N N 403 PRO CG HG3 sing N N 404 PRO CD HD2 sing N N 405 PRO CD HD3 sing N N 406 PRO OXT HXT sing N N 407 SER N CA sing N N 408 SER N H sing N N 409 SER N H2 sing N N 410 SER CA C sing N N 411 SER CA CB sing N N 412 SER CA HA sing N N 413 SER C O doub N N 414 SER C OXT sing N N 415 SER CB OG sing N N 416 SER CB HB2 sing N N 417 SER CB HB3 sing N N 418 SER OG HG sing N N 419 SER OXT HXT sing N N 420 THR N CA sing N N 421 THR N H sing N N 422 THR N H2 sing N N 423 THR CA C sing N N 424 THR CA CB sing N N 425 THR CA HA sing N N 426 THR C O doub N N 427 THR C OXT sing N N 428 THR CB OG1 sing N N 429 THR CB CG2 sing N N 430 THR CB HB sing N N 431 THR OG1 HG1 sing N N 432 THR CG2 HG21 sing N N 433 THR CG2 HG22 sing N N 434 THR CG2 HG23 sing N N 435 THR OXT HXT sing N N 436 TRP N CA sing N N 437 TRP N H sing N N 438 TRP N H2 sing N N 439 TRP CA C sing N N 440 TRP CA CB sing N N 441 TRP CA HA sing N N 442 TRP C O doub N N 443 TRP C OXT sing N N 444 TRP CB CG sing N N 445 TRP CB HB2 sing N N 446 TRP CB HB3 sing N N 447 TRP CG CD1 doub Y N 448 TRP CG CD2 sing Y N 449 TRP CD1 NE1 sing Y N 450 TRP CD1 HD1 sing N N 451 TRP CD2 CE2 doub Y N 452 TRP CD2 CE3 sing Y N 453 TRP NE1 CE2 sing Y N 454 TRP NE1 HE1 sing N N 455 TRP CE2 CZ2 sing Y N 456 TRP CE3 CZ3 doub Y N 457 TRP CE3 HE3 sing N N 458 TRP CZ2 CH2 doub Y N 459 TRP CZ2 HZ2 sing N N 460 TRP CZ3 CH2 sing Y N 461 TRP CZ3 HZ3 sing N N 462 TRP CH2 HH2 sing N N 463 TRP OXT HXT sing N N 464 TYR N CA sing N N 465 TYR N H sing N N 466 TYR N H2 sing N N 467 TYR CA C sing N N 468 TYR CA CB sing N N 469 TYR CA HA sing N N 470 TYR C O doub N N 471 TYR C OXT sing N N 472 TYR CB CG sing N N 473 TYR CB HB2 sing N N 474 TYR CB HB3 sing N N 475 TYR CG CD1 doub Y N 476 TYR CG CD2 sing Y N 477 TYR CD1 CE1 sing Y N 478 TYR CD1 HD1 sing N N 479 TYR CD2 CE2 doub Y N 480 TYR CD2 HD2 sing N N 481 TYR CE1 CZ doub Y N 482 TYR CE1 HE1 sing N N 483 TYR CE2 CZ sing Y N 484 TYR CE2 HE2 sing N N 485 TYR CZ OH sing N N 486 TYR OH HH sing N N 487 TYR OXT HXT sing N N 488 VAL N CA sing N N 489 VAL N H sing N N 490 VAL N H2 sing N N 491 VAL CA C sing N N 492 VAL CA CB sing N N 493 VAL CA HA sing N N 494 VAL C O doub N N 495 VAL C OXT sing N N 496 VAL CB CG1 sing N N 497 VAL CB CG2 sing N N 498 VAL CB HB sing N N 499 VAL CG1 HG11 sing N N 500 VAL CG1 HG12 sing N N 501 VAL CG1 HG13 sing N N 502 VAL CG2 HG21 sing N N 503 VAL CG2 HG22 sing N N 504 VAL CG2 HG23 sing N N 505 VAL OXT HXT sing N N 506 # _em_admin.current_status REL _em_admin.deposition_date 2024-05-30 _em_admin.deposition_site PDBJ _em_admin.entry_id 8ZPM _em_admin.last_update 2025-04-02 _em_admin.map_release_date 2025-02-26 _em_admin.title 'Cryo-EM strucutre of CXCR4 complexed with antagonist AMD070' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 54.4 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other government' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32100963 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8ZPM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_