data_05Y
#

_chem_comp.id                                   05Y
_chem_comp.name                                 "~{N}-[1-(2-pyridin-2-ylethyl)benzimidazol-2-yl]propanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H18 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-03
_chem_comp.pdbx_modified_date                   2022-04-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       294.351
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    05Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OPR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
05Y  C05  C1   C  0  1  N  N  N  -4.300   0.542   9.389   3.548  -4.649   0.010  C05  05Y   1  
05Y  C06  C2   C  0  1  N  N  N  -4.857   1.889   9.857   2.199  -3.966  -0.228  C06  05Y   2  
05Y  C07  C3   C  0  1  N  N  N  -5.887   2.400   8.855   2.365  -2.472  -0.113  C07  05Y   3  
05Y  C09  C4   C  0  1  Y  N  N  -4.350   4.232   7.963   1.455  -0.289  -0.180  C09  05Y   4  
05Y  C11  C5   C  0  1  Y  N  N  -2.246   4.706   7.961   2.375   1.667   0.104  C11  05Y   5  
05Y  C12  C6   C  0  1  Y  N  N  -0.844   4.743   7.948   3.211   2.763   0.330  C12  05Y   6  
05Y  C13  C7   C  0  1  Y  N  N  -0.185   5.966   7.999   2.691   4.037   0.299  C13  05Y   7  
05Y  C14  C8   C  0  1  Y  N  N  -0.906   7.155   8.067   1.343   4.242   0.045  C14  05Y   8  
05Y  C15  C9   C  0  1  Y  N  N  -2.294   7.117   8.082   0.504   3.170  -0.181  C15  05Y   9  
05Y  C16  C10  C  0  1  Y  N  N  -2.959   5.881   8.030   1.011   1.880  -0.154  C16  05Y  10  
05Y  C18  C11  C  0  1  N  N  N  -5.326   6.544   8.094  -0.950   0.333  -0.636  C18  05Y  11  
05Y  C19  C12  C  0  1  N  N  N  -5.891   6.959   6.737  -1.726   0.156   0.671  C19  05Y  12  
05Y  C20  C13  C  0  1  Y  N  N  -6.856   5.886   6.245  -3.170  -0.144   0.361  C20  05Y  13  
05Y  C22  C14  C  0  1  Y  N  N  -7.409   4.234   4.739  -5.124   0.461  -0.700  C22  05Y  14  
05Y  C23  C15  C  0  1  Y  N  N  -8.586   3.986   5.426  -5.778  -0.657  -0.217  C23  05Y  15  
05Y  C24  C16  C  0  1  Y  N  N  -8.907   4.707   6.572  -5.089  -1.546   0.593  C24  05Y  16  
05Y  C25  C17  C  0  1  Y  N  N  -8.012   5.682   6.990  -3.759  -1.279   0.884  C25  05Y  17  
05Y  N08  N1   N  0  1  N  N  N  -5.601   3.495   7.934   1.303  -1.661  -0.285  N08  05Y  18  
05Y  N10  N2   N  0  1  Y  N  N  -3.138   3.703   7.915   2.582   0.324   0.077  N10  05Y  19  
05Y  N17  N3   N  0  1  Y  N  N  -4.258   5.557   8.006   0.454   0.625  -0.335  N17  05Y  20  
05Y  N21  N4   N  0  1  Y  N  N  -6.585   5.176   5.163  -3.858   0.682  -0.403  N21  05Y  21  
05Y  O26  O1   O  0  1  N  N  N  -6.930   1.836   8.795   3.454  -2.001   0.134  O26  05Y  22  
05Y  H1   H1   H  0  1  N  N  N  -3.558   0.179  10.116   3.911  -4.399   1.007  H1   05Y  23  
05Y  H2   H2   H  0  1  N  N  N  -5.121  -0.186   9.308   3.428  -5.729  -0.073  H2   05Y  24  
05Y  H3   H3   H  0  1  N  N  N  -3.821   0.665   8.406   4.265  -4.305  -0.735  H3   05Y  25  
05Y  H4   H4   H  0  1  N  N  N  -4.035   2.615   9.938   1.836  -4.215  -1.225  H4   05Y  26  
05Y  H5   H5   H  0  1  N  N  N  -5.335   1.765  10.840   1.482  -4.310   0.517  H5   05Y  27  
05Y  H6   H6   H  0  1  N  N  N  -0.278   3.824   7.899   4.262   2.611   0.530  H6   05Y  28  
05Y  H7   H7   H  0  1  N  N  N   0.895   5.994   7.986   3.338   4.884   0.475  H7   05Y  29  
05Y  H8   H8   H  0  1  N  N  N  -0.388   8.102   8.108   0.948   5.246   0.024  H8   05Y  30  
05Y  H9   H9   H  0  1  N  N  N  -2.860   8.035   8.133  -0.544   3.336  -0.378  H9   05Y  31  
05Y  H10  H10  H  0  1  N  N  N  -4.930   7.440   8.594  -1.013  -0.583  -1.223  H10  05Y  32  
05Y  H11  H11  H  0  1  N  N  N  -6.143   6.119   8.695  -1.379   1.159  -1.204  H11  05Y  33  
05Y  H12  H12  H  0  1  N  N  N  -5.069   7.073   6.015  -1.297  -0.669   1.239  H12  05Y  34  
05Y  H13  H13  H  0  1  N  N  N  -6.425   7.915   6.838  -1.664   1.072   1.258  H13  05Y  35  
05Y  H14  H14  H  0  1  N  N  N  -7.165   3.658   3.858  -5.655   1.160  -1.328  H14  05Y  36  
05Y  H15  H15  H  0  1  N  N  N  -9.262   3.224   5.068  -6.814  -0.834  -0.465  H15  05Y  37  
05Y  H16  H16  H  0  1  N  N  N  -9.820   4.515   7.117  -5.574  -2.428   0.985  H16  05Y  38  
05Y  H17  H17  H  0  1  N  N  N  -8.209   6.269   7.875  -3.191  -1.950   1.512  H17  05Y  39  
05Y  H18  H18  H  0  1  N  N  N  -6.293   3.748   7.257   0.431  -2.039  -0.483  H18  05Y  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
05Y  C22  N21  DOUB  Y  N   1  
05Y  C22  C23  SING  Y  N   2  
05Y  N21  C20  SING  Y  N   3  
05Y  C23  C24  DOUB  Y  N   4  
05Y  C20  C19  SING  N  N   5  
05Y  C20  C25  DOUB  Y  N   6  
05Y  C24  C25  SING  Y  N   7  
05Y  C19  C18  SING  N  N   8  
05Y  N10  C11  SING  Y  N   9  
05Y  N10  C09  DOUB  Y  N  10  
05Y  N08  C09  SING  N  N  11  
05Y  N08  C07  SING  N  N  12  
05Y  C12  C11  DOUB  Y  N  13  
05Y  C12  C13  SING  Y  N  14  
05Y  C11  C16  SING  Y  N  15  
05Y  C09  N17  SING  Y  N  16  
05Y  C13  C14  DOUB  Y  N  17  
05Y  N17  C16  SING  Y  N  18  
05Y  N17  C18  SING  N  N  19  
05Y  C16  C15  DOUB  Y  N  20  
05Y  C14  C15  SING  Y  N  21  
05Y  O26  C07  DOUB  N  N  22  
05Y  C07  C06  SING  N  N  23  
05Y  C05  C06  SING  N  N  24  
05Y  C05  H1   SING  N  N  25  
05Y  C05  H2   SING  N  N  26  
05Y  C05  H3   SING  N  N  27  
05Y  C06  H4   SING  N  N  28  
05Y  C06  H5   SING  N  N  29  
05Y  C12  H6   SING  N  N  30  
05Y  C13  H7   SING  N  N  31  
05Y  C14  H8   SING  N  N  32  
05Y  C15  H9   SING  N  N  33  
05Y  C18  H10  SING  N  N  34  
05Y  C18  H11  SING  N  N  35  
05Y  C19  H12  SING  N  N  36  
05Y  C19  H13  SING  N  N  37  
05Y  C22  H14  SING  N  N  38  
05Y  C23  H15  SING  N  N  39  
05Y  C24  H16  SING  N  N  40  
05Y  C25  H17  SING  N  N  41  
05Y  N08  H18  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
05Y  InChI             InChI                 1.03   "InChI=1S/C17H18N4O/c1-2-16(22)20-17-19-14-8-3-4-9-15(14)21(17)12-10-13-7-5-6-11-18-13/h3-9,11H,2,10,12H2,1H3,(H,19,20,22)"  
05Y  InChIKey          InChI                 1.03   XNCNQSNDNANIRM-UHFFFAOYSA-N  
05Y  SMILES_CANONICAL  CACTVS                3.385  "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3"  
05Y  SMILES            CACTVS                3.385  "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3"  
05Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3"  
05Y  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3"  
#
_pdbx_chem_comp_identifier.comp_id          05Y
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[1-(2-pyridin-2-ylethyl)benzimidazol-2-yl]propanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
05Y  "Create component"  2021-06-03  PDBE  
05Y  "Initial release"   2022-04-06  RCSB  
##
