data_27C
#

_chem_comp.id                                   27C
_chem_comp.name                                 "5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-alpha-D-arabinofuranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C9 H18 F O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;Inhibitor CZ-27 based on arabinosyl-2-fluoro-2-deoxynicotinamide mononucleotide, bound form;
5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-alpha-D-arabinose;
5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-D-arabinose;
5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-arabinose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-05-11
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       288.207
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    27C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ROK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  27C  "Inhibitor CZ-27 based on arabinosyl-2-fluoro-2-deoxynicotinamide mononucleotide, bound form"  PDB  ?  
2  27C  "5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-alpha-D-arabinose"                       PDB  ?  
3  27C  "5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-D-arabinose"                             PDB  ?  
4  27C  "5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-arabinose"                               PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
27C  O1    O1    O  0  1  N  Y  N   -7.950  10.239  50.481  -3.779   2.685   0.298  O1    27C   1  
27C  P     P     P  0  1  N  N  N   -5.241  10.874  56.249   1.548  -0.923  -0.273  P     27C   2  
27C  C1    C1    C  0  1  N  N  S   -8.256   9.288  51.609  -3.794   1.511  -0.516  C1    27C   3  
27C  C2    C2    C  0  1  N  N  S   -9.472   8.833  52.428  -4.620   0.407   0.171  C2    27C   4  
27C  F2    F2    F  0  1  N  N  N   -9.316   7.595  53.012  -5.645  -0.035  -0.672  F2    27C   5  
27C  C3    C3    C  0  1  N  N  R   -9.526   9.840  53.547  -3.599  -0.729   0.425  C3    27C   6  
27C  O3    O3    O  0  1  N  N  N  -10.339  10.918  53.100  -3.799  -1.317   1.712  O3    27C   7  
27C  C4    C4    C  0  1  N  N  R   -8.046  10.273  53.727  -2.249   0.030   0.367  C4    27C   8  
27C  O4    O4    O  0  1  N  N  N   -7.281   9.754  52.580  -2.456   1.009  -0.674  O4    27C   9  
27C  C5    C5    C  0  1  N  N  N   -7.374   9.668  54.977  -1.111  -0.923  -0.008  C5    27C  10  
27C  O5    O5    O  0  1  N  N  N   -5.950   9.968  55.101   0.135  -0.226   0.059  O5    27C  11  
27C  C1C   C1C   C  0  1  N  N  N   -3.521   8.972  56.497   4.123  -0.241  -0.066  C1C   27C  12  
27C  C2C   C2C   C  0  1  N  N  N   -1.997   8.876  56.537   4.986   0.972   0.288  C2C   27C  13  
27C  C3C   C3C   C  0  1  N  N  N   -1.379   9.956  57.406   6.465   0.593   0.185  C3C   27C  14  
27C  C4C   C4C   C  0  1  N  N  N    0.156   9.912  57.337   7.328   1.806   0.538  C4C   27C  15  
27C  OP1   OP1   O  0  1  N  N  N   -6.194  10.238  57.179   1.585  -1.345  -1.827  OP1   27C  16  
27C  OP2   OP2   O  0  1  N  N  N   -5.515  12.188  55.468   1.714  -2.128   0.570  OP2   27C  17  
27C  OP3   OP3   O  0  1  N  N  N   -3.882  10.209  55.870   2.742   0.113   0.030  OP3   27C  18  
27C  HO1   HO1   H  0  1  N  Y  N   -7.023  10.203  50.279  -3.275   3.419  -0.079  HO1   27C  19  
27C  H1    H1    H  0  1  N  N  N   -7.832   8.337  51.254  -4.223   1.742  -1.491  H1    27C  20  
27C  H2    H2    H  0  1  N  N  N  -10.383   8.894  51.814  -5.032   0.770   1.113  H2    27C  21  
27C  H3    H3    H  0  1  N  N  N   -9.907   9.383  54.472  -3.655  -1.484  -0.359  H3    27C  22  
27C  HO3   HO3   H  0  1  N  Y  N  -10.397  11.576  53.783  -4.668  -1.726   1.827  HO3   27C  23  
27C  H4    H4    H  0  1  N  N  N   -7.986  11.371  53.769  -2.041   0.517   1.320  H4    27C  24  
27C  H51   H5    H  0  1  N  N  N   -7.887  10.060  55.867  -1.096  -1.762   0.687  H51   27C  25  
27C  H52   H5A   H  0  1  N  N  N   -7.493   8.575  54.937  -1.267  -1.292  -1.022  H52   27C  26  
27C  H1C   H1C   H  0  1  N  N  N   -3.922   8.944  57.521   4.346  -0.561  -1.083  H1C   27C  27  
27C  H1CA  H1CA  H  0  0  N  N  N   -3.931   8.130  55.920   4.338  -1.054   0.627  H1CA  27C  28  
27C  H2C   H2C   H  0  1  N  N  N   -1.714   7.892  56.939   4.770   1.786  -0.405  H2C   27C  29  
27C  H2CA  H2CA  H  0  0  N  N  N   -1.608   8.979  55.513   4.763   1.293   1.305  H2CA  27C  30  
27C  H3C   H3C   H  0  1  N  N  N   -1.726  10.940  57.057   6.680  -0.221   0.877  H3C   27C  31  
27C  H3CA  H3CA  H  0  0  N  N  N   -1.696   9.804  58.448   6.688   0.272  -0.833  H3CA  27C  32  
27C  H4C   H4C   H  0  1  N  N  N    0.575  10.704  57.975   8.381   1.536   0.465  H4C   27C  33  
27C  H4CA  H4CA  H  0  0  N  N  N    0.511   8.932  57.689   7.112   2.619  -0.155  H4CA  27C  34  
27C  H4CB  H4CB  H  0  0  N  N  N    0.481  10.068  56.298   7.105   2.126   1.556  H4CB  27C  35  
27C  HOP1  HOP1  H  0  0  N  N  N   -6.990  10.756  57.221   1.482  -0.603  -2.438  HOP1  27C  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
27C  O1   C1    SING  N  N   1  
27C  O1   HO1   SING  N  N   2  
27C  O5   P     SING  N  N   3  
27C  OP2  P     DOUB  N  N   4  
27C  OP3  P     SING  N  N   5  
27C  P    OP1   SING  N  N   6  
27C  C1   C2    SING  N  N   7  
27C  C1   O4    SING  N  N   8  
27C  C1   H1    SING  N  N   9  
27C  C2   F2    SING  N  N  10  
27C  C2   C3    SING  N  N  11  
27C  C2   H2    SING  N  N  12  
27C  O3   C3    SING  N  N  13  
27C  C3   C4    SING  N  N  14  
27C  C3   H3    SING  N  N  15  
27C  O3   HO3   SING  N  N  16  
27C  O4   C4    SING  N  N  17  
27C  C4   C5    SING  N  N  18  
27C  C4   H4    SING  N  N  19  
27C  C5   O5    SING  N  N  20  
27C  C5   H51   SING  N  N  21  
27C  C5   H52   SING  N  N  22  
27C  OP3  C1C   SING  N  N  23  
27C  C1C  C2C   SING  N  N  24  
27C  C1C  H1C   SING  N  N  25  
27C  C1C  H1CA  SING  N  N  26  
27C  C2C  C3C   SING  N  N  27  
27C  C2C  H2C   SING  N  N  28  
27C  C2C  H2CA  SING  N  N  29  
27C  C4C  C3C   SING  N  N  30  
27C  C3C  H3C   SING  N  N  31  
27C  C3C  H3CA  SING  N  N  32  
27C  C4C  H4C   SING  N  N  33  
27C  C4C  H4CA  SING  N  N  34  
27C  C4C  H4CB  SING  N  N  35  
27C  OP1  HOP1  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
27C  SMILES            ACDLabs               12.01  "FC1C(O)C(OC1O)COP(=O)(OCCCC)O"  
27C  InChI             InChI                 1.03   "InChI=1S/C9H18FO7P/c1-2-3-4-15-18(13,14)16-5-6-8(11)7(10)9(12)17-6/h6-9,11-12H,2-5H2,1H3,(H,13,14)/t6-,7+,8-,9+/m1/s1"  
27C  InChIKey          InChI                 1.03   BWGUXMJYTMZOIK-XAVMHZPKSA-N  
27C  SMILES_CANONICAL  CACTVS                3.370  "CCCCO[P](O)(=O)OC[C@H]1O[C@H](O)[C@@H](F)[C@@H]1O"  
27C  SMILES            CACTVS                3.370  "CCCCO[P](O)(=O)OC[CH]1O[CH](O)[CH](F)[CH]1O"  
27C  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCO[P@](=O)(O)OC[C@@H]1[C@H]([C@@H]([C@H](O1)O)F)O"  
27C  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCOP(=O)(O)OCC1C(C(C(O1)O)F)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
27C  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-O-[(S)-butoxy(hydroxy)phosphoryl]-2-deoxy-2-fluoro-alpha-D-arabinofuranose"  
27C  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "butyl [(2R,3R,4S,5S)-4-fluoranyl-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
27C  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
27C  "CARBOHYDRATE RING"                    furanose  PDB  ?  
27C  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
27C  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
27C  "Create component"          2011-05-11  PDBJ  
27C  "Modify descriptor"         2011-06-04  RCSB  
27C  "Other modification"        2013-01-08  RCSB  
27C  "Other modification"        2020-07-03  RCSB  
27C  "Modify synonyms"           2020-07-17  RCSB  
27C  "Modify linking type"       2020-07-17  RCSB  
27C  "Modify atom id"            2020-07-17  RCSB  
27C  "Modify component atom id"  2020-07-17  RCSB  
27C  "Modify leaving atom flag"  2020-07-17  RCSB  
##
