data_2NF
#

_chem_comp.id                                   2NF
_chem_comp.name                                 
;[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]
[(2R,3S,4R,5R)-5-(3-carbamoylpyridin-1-ium-1yl)- 3-fluoro-,4- hydroxyoxolan-2-yl]methyl phosphate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H26 F N7 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "nicotinamide 2'-deoxy-2'-fluororibofuranosyl adenine dinucleotide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-03-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       665.416
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2NF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3GHH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2NF  O7N   O7N   O   0  1  N  N  N  23.875   -4.878   1.079  -8.096  -5.068   0.975  O7N   2NF   1  
2NF  C7N   C7N   C   0  1  N  N  N  23.396   -3.598   1.444  -8.420  -4.189   1.750  C7N   2NF   2  
2NF  N7N   N7N   N   0  1  N  N  N  24.262   -2.600   1.664  -9.213  -4.477   2.801  N7N   2NF   3  
2NF  C3N   C3N   C   0  1  Y  N  N  21.907   -3.405   1.640  -7.937  -2.807   1.545  C3N   2NF   4  
2NF  C4N   C4N   C   0  1  Y  N  N  21.117   -4.554   1.544  -8.298  -1.788   2.434  C4N   2NF   5  
2NF  C5N   C5N   C   0  1  Y  N  N  19.744   -4.451   1.736  -7.820  -0.511   2.196  C5N   2NF   6  
2NF  C6N   C6N   C   0  1  Y  N  N  19.181   -3.199   2.026  -7.009  -0.285   1.099  C6N   2NF   7  
2NF  C2N   C2N   C   0  1  Y  N  N  21.309   -2.157   1.934  -7.110  -2.497   0.464  C2N   2NF   8  
2NF  N1N   N1N   N   1  1  Y  N  N  19.942   -2.056   2.127  -6.685  -1.265   0.277  N1N   2NF   9  
2NF  C1D   C1D   C   0  1  N  N  R  19.213   -0.777   2.451  -5.824  -0.976  -0.872  C1D   2NF  10  
2NF  C2D   C2D   C   0  1  N  N  R  19.820    0.568   2.004  -6.655  -0.340  -2.003  C2D   2NF  11  
2NF  F2D   F2D   F   0  1  N  N  N  19.472    1.556   2.960  -6.600  -1.131  -3.155  F2D   2NF  12  
2NF  C3D   C3D   C   0  1  N  N  R  19.055    0.965   0.759  -5.974   1.028  -2.251  C3D   2NF  13  
2NF  O3D   O3D   O   0  1  N  N  N  18.371    2.178   0.936  -5.897   1.314  -3.649  O3D   2NF  14  
2NF  O4D   O4D   O   0  1  N  N  N  17.928   -0.772   1.844  -4.811  -0.028  -0.496  O4D   2NF  15  
2NF  C4D   C4D   C   0  1  N  N  R  17.996   -0.126   0.576  -4.561   0.800  -1.655  C4D   2NF  16  
2NF  C5D   C5D   C   0  1  N  N  N  18.382   -1.041  -0.606  -3.930   2.131  -1.241  C5D   2NF  17  
2NF  O5D   O5D   O   0  1  N  N  N  17.699   -2.290  -0.568  -2.588   1.906  -0.805  O5D   2NF  18  
2NF  PN    PN    P   0  1  N  N  N  16.616   -2.659  -1.724  -1.621   3.089  -0.296  PN    2NF  19  
2NF  O1N   O1N   O   0  1  N  N  N  15.706   -1.490  -1.822  -1.532   4.185  -1.381  O1N   2NF  20  
2NF  O2N   O2N   O  -1  1  N  N  N  16.122   -4.055  -1.501  -2.193   3.697   1.004  O2N   2NF  21  
2NF  O3    O3    O   0  1  N  N  N  17.506   -2.518  -3.021  -0.152   2.496  -0.009  O3    2NF  22  
2NF  PA    PA    P   0  1  N  N  R  17.963   -3.683  -4.039   1.298   3.159   0.211  PA    2NF  23  
2NF  O1A   O1A   O   0  1  N  N  N  19.014   -2.975  -4.827   1.179   4.309   1.136  O1A   2NF  24  
2NF  O2A   O2A   O   0  1  N  N  N  16.696   -4.261  -4.510   1.877   3.667  -1.203  O2A   2NF  25  
2NF  O5B   O5B   O   0  1  N  N  N  18.741   -4.765  -3.172   2.299   2.066   0.839  O5B   2NF  26  
2NF  C5B   C5B   C   0  1  N  N  N  20.015   -4.457  -2.617   3.633   2.375   1.248  C5B   2NF  27  
2NF  C4B   C4B   C   0  1  N  N  R  20.521   -5.799  -2.139   4.303   1.114   1.797  C4B   2NF  28  
2NF  O4B   O4B   O   0  1  N  N  N  19.646   -6.310  -1.133   4.478   0.154   0.742  O4B   2NF  29  
2NF  C1B   C1B   C   0  1  N  N  R  19.150   -7.571  -1.550   5.707  -0.553   1.014  C1B   2NF  30  
2NF  C2B   C2B   C   0  1  N  N  R  19.201   -7.607  -3.076   6.660   0.561   1.519  C2B   2NF  31  
2NF  O2B   O2B   O   0  1  N  N  N  19.210   -8.917  -3.602   7.687   0.015   2.350  O2B   2NF  32  
2NF  C3B   C3B   C   0  1  N  N  S  20.438   -6.738  -3.341   5.704   1.459   2.339  C3B   2NF  33  
2NF  O3B   O3B   O   0  1  N  N  N  21.666   -7.407  -3.451   5.793   1.146   3.730  O3B   2NF  34  
2NF  N9A   N9A   N   0  1  Y  N  N  17.805   -7.859  -1.036   6.232  -1.166  -0.208  N9A   2NF  35  
2NF  C8A   C8A   C   0  1  Y  N  N  16.586   -7.350  -1.390   5.973  -0.767  -1.486  C8A   2NF  36  
2NF  N7A   N7A   N   0  1  Y  N  N  15.670   -7.956  -0.607   6.602  -1.535  -2.327  N7A   2NF  37  
2NF  C5A   C5A   C   0  1  Y  N  N  16.308   -8.830   0.229   7.302  -2.473  -1.645  C5A   2NF  38  
2NF  C6A   C6A   C   0  1  Y  N  N  15.891   -9.697   1.220   8.142  -3.539  -2.010  C6A   2NF  39  
2NF  N6A   N6A   N   0  1  N  N  N  14.598   -9.755   1.526   8.406  -3.809  -3.342  N6A   2NF  40  
2NF  C4A   C4A   C   0  1  Y  N  N  17.650   -8.779  -0.032   7.077  -2.244  -0.278  C4A   2NF  41  
2NF  N3A   N3A   N   0  1  Y  N  N  18.570   -9.545   0.646   7.664  -3.036   0.615  N3A   2NF  42  
2NF  C2A   C2A   C   0  1  Y  N  N  18.177  -10.407   1.626   8.447  -4.019   0.227  C2A   2NF  43  
2NF  N1A   N1A   N   0  1  Y  N  N  16.807  -10.472   1.905   8.679  -4.281  -1.047  N1A   2NF  44  
2NF  HN7N  HN7N  H   0  0  N  N  N  25.178   -2.963   1.496  -9.527  -5.384   2.938  HN7N  2NF  45  
2NF  HN7A  HN7A  H   0  0  N  N  N  24.035   -1.667   1.944  -9.472  -3.776   3.420  HN7A  2NF  46  
2NF  H4N   H4N   H   0  1  N  N  N  21.568   -5.510   1.323  -8.933  -1.992   3.283  H4N   2NF  47  
2NF  H5N   H5N   H   0  1  N  N  N  19.116   -5.327   1.663  -8.078   0.301   2.861  H5N   2NF  48  
2NF  H6N   H6N   H   0  1  N  N  N  18.114   -3.129   2.175  -6.634   0.711   0.911  H6N   2NF  49  
2NF  H2N   H2N   H   0  1  N  N  N  21.926   -1.274   2.009  -6.820  -3.274  -0.228  H2N   2NF  50  
2NF  H1D   H1D   H   0  1  N  N  N  19.245   -0.809   3.550  -5.358  -1.895  -1.226  H1D   2NF  51  
2NF  H2D   H2D   H   0  1  N  N  N  20.909    0.486   1.869  -7.688  -0.201  -1.685  H2D   2NF  52  
2NF  H3D   H3D   H   0  1  N  N  N  19.745    1.078  -0.090  -6.496   1.825  -1.721  H3D   2NF  53  
2NF  HO3D  HO3D  H   0  0  N  N  N  18.216    2.323   1.862  -6.758   1.376  -4.085  HO3D  2NF  54  
2NF  H4D   H4D   H   0  1  N  N  N  16.998    0.247   0.304  -3.924   0.277  -2.368  H4D   2NF  55  
2NF  H5D   H5D   H   0  1  N  N  N  18.122   -0.529  -1.544  -3.926   2.811  -2.093  H5D   2NF  56  
2NF  H5DA  H5DA  H   0  0  N  N  N  19.461   -1.244  -0.538  -4.508   2.570  -0.428  H5DA  2NF  57  
2NF  HO2A  HO2A  H   0  0  N  N  N  16.111   -4.386  -3.772   1.981   2.964  -1.860  HO2A  2NF  58  
2NF  H5B   H5B   H   0  1  N  N  N  20.687   -4.015  -3.368   4.198   2.744   0.392  H5B   2NF  59  
2NF  H5BA  H5BA  H   0  0  N  N  N  19.961   -3.709  -1.812   3.607   3.140   2.024  H5BA  2NF  60  
2NF  H4B   H4B   H   0  1  N  N  N  21.540   -5.713  -1.734   3.691   0.685   2.591  H4B   2NF  61  
2NF  H1B   H1B   H   0  1  N  N  N  19.783   -8.366  -1.129   5.553  -1.308   1.785  H1B   2NF  62  
2NF  H2B   H2B   H   0  1  N  N  N  18.311   -7.221  -3.595   7.091   1.112   0.683  H2B   2NF  63  
2NF  HO2B  HO2B  H   0  0  N  N  N  19.212   -8.878  -4.551   8.309   0.673   2.690  HO2B  2NF  64  
2NF  H3B   H3B   H   0  1  N  N  N  20.300   -6.261  -4.322   5.930   2.512   2.169  H3B   2NF  65  
2NF  HO3B  HO3B  H   0  0  N  N  N  21.864   -7.558  -4.368   6.654   1.343   4.124  HO3B  2NF  66  
2NF  H8A   H8A   H   0  1  N  N  N  16.394   -6.607  -2.150   5.340   0.064  -1.760  H8A   2NF  67  
2NF  HN6A  HN6A  H   0  0  N  N  N  14.491   -9.770   2.520   8.009  -3.260  -4.036  HN6A  2NF  68  
2NF  HN6B  HN6B  H   0  0  N  N  N  14.131   -8.954   1.152   8.987  -4.547  -3.581  HN6B  2NF  69  
2NF  H2A   H2A   H   0  1  N  N  N  18.891  -11.013   2.163   8.908  -4.644   0.978  H2A   2NF  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2NF  O7N  C7N   DOUB  N  N   1  
2NF  C7N  C3N   SING  N  N   2  
2NF  C7N  N7N   SING  N  N   3  
2NF  N7N  HN7N  SING  N  N   4  
2NF  N7N  HN7A  SING  N  N   5  
2NF  C3N  C2N   SING  Y  N   6  
2NF  C4N  C3N   DOUB  Y  N   7  
2NF  C4N  C5N   SING  Y  N   8  
2NF  C4N  H4N   SING  N  N   9  
2NF  C5N  C6N   DOUB  Y  N  10  
2NF  C5N  H5N   SING  N  N  11  
2NF  C6N  N1N   SING  Y  N  12  
2NF  C6N  H6N   SING  N  N  13  
2NF  C2N  N1N   DOUB  Y  N  14  
2NF  C2N  H2N   SING  N  N  15  
2NF  N1N  C1D   SING  N  N  16  
2NF  C1D  H1D   SING  N  N  17  
2NF  C2D  C1D   SING  N  N  18  
2NF  C2D  F2D   SING  N  N  19  
2NF  C2D  H2D   SING  N  N  20  
2NF  C3D  C2D   SING  N  N  21  
2NF  C3D  O3D   SING  N  N  22  
2NF  C3D  H3D   SING  N  N  23  
2NF  O3D  HO3D  SING  N  N  24  
2NF  O4D  C1D   SING  N  N  25  
2NF  C4D  C3D   SING  N  N  26  
2NF  C4D  O4D   SING  N  N  27  
2NF  C4D  H4D   SING  N  N  28  
2NF  C5D  C4D   SING  N  N  29  
2NF  C5D  O5D   SING  N  N  30  
2NF  C5D  H5D   SING  N  N  31  
2NF  C5D  H5DA  SING  N  N  32  
2NF  PN   O5D   SING  N  N  33  
2NF  PN   O2N   SING  N  N  34  
2NF  O1N  PN    DOUB  N  N  35  
2NF  O3   PN    SING  N  N  36  
2NF  PA   O3    SING  N  N  37  
2NF  PA   O5B   SING  N  N  38  
2NF  O1A  PA    DOUB  N  N  39  
2NF  O2A  PA    SING  N  N  40  
2NF  O2A  HO2A  SING  N  N  41  
2NF  O5B  C5B   SING  N  N  42  
2NF  C5B  C4B   SING  N  N  43  
2NF  C5B  H5B   SING  N  N  44  
2NF  C5B  H5BA  SING  N  N  45  
2NF  C4B  O4B   SING  N  N  46  
2NF  C4B  H4B   SING  N  N  47  
2NF  C1B  O4B   SING  N  N  48  
2NF  C1B  N9A   SING  N  N  49  
2NF  C1B  H1B   SING  N  N  50  
2NF  C2B  C1B   SING  N  N  51  
2NF  C2B  H2B   SING  N  N  52  
2NF  O2B  C2B   SING  N  N  53  
2NF  O2B  HO2B  SING  N  N  54  
2NF  C3B  C4B   SING  N  N  55  
2NF  C3B  C2B   SING  N  N  56  
2NF  C3B  H3B   SING  N  N  57  
2NF  O3B  C3B   SING  N  N  58  
2NF  O3B  HO3B  SING  N  N  59  
2NF  N9A  C4A   SING  Y  N  60  
2NF  C8A  N9A   SING  Y  N  61  
2NF  C8A  N7A   DOUB  Y  N  62  
2NF  C8A  H8A   SING  N  N  63  
2NF  N7A  C5A   SING  Y  N  64  
2NF  C5A  C6A   SING  Y  N  65  
2NF  C6A  N6A   SING  N  N  66  
2NF  C6A  N1A   DOUB  Y  N  67  
2NF  N6A  HN6A  SING  N  N  68  
2NF  N6A  HN6B  SING  N  N  69  
2NF  C4A  C5A   DOUB  Y  N  70  
2NF  C4A  N3A   SING  Y  N  71  
2NF  N3A  C2A   DOUB  Y  N  72  
2NF  C2A  N1A   SING  Y  N  73  
2NF  C2A  H2A   SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2NF  InChI             InChI                 1.03   "InChI=1S/C21H26FN7O13P2/c22-12-14(30)10(40-20(12)28-3-1-2-9(4-28)18(24)33)5-38-43(34,35)42-44(36,37)39-6-11-15(31)16(32)21(41-11)29-8-27-13-17(23)25-7-26-19(13)29/h1-4,7-8,10-12,14-16,20-21,30-32H,5-6H2,(H5-,23,24,25,26,33,34,35,36,37)/t10-,11-,12-,14-,15-,16-,20-,21-/m1/s1"  
2NF  InChIKey          InChI                 1.03   JSGNSBZQCQQLEF-OZCXFSBSSA-N  
2NF  SMILES_CANONICAL  CACTVS                3.385  "NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2F"  
2NF  SMILES            CACTVS                3.385  "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2F"  
2NF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)F)C(=O)N"  
2NF  SMILES            "OpenEye OEToolkits"  1.7.5  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)F)C(=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          2NF
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "[(2R,3R,4R,5R)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2NF  "Create component"    2009-03-27  RCSB  
2NF  "Modify descriptor"   2011-06-04  RCSB  
2NF  "Modify descriptor"   2012-01-05  RCSB  
2NF  "Modify coordinates"  2012-01-05  RCSB  
2NF  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2NF
_pdbx_chem_comp_synonyms.name        "nicotinamide 2'-deoxy-2'-fluororibofuranosyl adenine dinucleotide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
