data_2RI
#

_chem_comp.id                                   2RI
_chem_comp.name                                 "(2~{R})-~{N}-dibenzofuran-3-yl-~{N}-[(1~{R})-2-[[(1~{S})-1-(4-fluorophenyl)ethyl]amino]-2-oxidanylidene-1-pyridin-3-yl-ethyl]-2-oxidanyl-propanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H26 F N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-09
_chem_comp.pdbx_modified_date                   2021-07-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       511.544
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2RI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7FAZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2RI  C10  C1   C  0  1  N  N  R  20.110   6.862  -25.652   0.588  -0.608   0.637  C10  2RI   1  
2RI  C13  C2   C  0  1  Y  N  N  16.518   7.387  -24.420  -0.365   2.824   1.882  C13  2RI   2  
2RI  C20  C3   C  0  1  Y  N  N  23.158   4.323  -28.215  -3.818  -0.040   0.638  C20  2RI   3  
2RI  C22  C4   C  0  1  Y  N  N  24.563   3.639  -29.792  -5.871   0.843   0.630  C22  2RI   4  
2RI  C24  C5   C  0  1  Y  N  N  26.562   5.010  -29.567  -6.601   0.612  -1.667  C24  2RI   5  
2RI  C26  C6   C  0  1  Y  N  N  26.454   3.304  -31.301  -8.043   1.614  -0.037  C26  2RI   6  
2RI  C28  C7   C  0  1  Y  N  N  24.304   5.106  -28.086  -4.276  -0.154  -0.683  C28  2RI   7  
2RI  C02  C8   C  0  1  Y  N  N  22.887   6.450  -31.608   7.502   1.358   0.256  C02  2RI   8  
2RI  C03  C9   C  0  1  Y  N  N  23.319   7.110  -30.467   7.462   0.291  -0.626  C03  2RI   9  
2RI  C04  C10  C  0  1  Y  N  N  22.406   7.797  -29.686   6.254  -0.122  -1.155  C04  2RI  10  
2RI  C05  C11  C  0  1  Y  N  N  21.065   7.822  -30.045   5.086   0.529  -0.803  C05  2RI  11  
2RI  C06  C12  C  0  1  N  N  S  20.076   8.595  -29.180   3.769   0.077  -1.380  C06  2RI  12  
2RI  C07  C13  C  0  1  N  N  N  20.303  10.100  -29.357   3.376   0.998  -2.536  C07  2RI  13  
2RI  C09  C14  C  0  1  N  N  N  19.922   7.017  -27.170   1.650  -0.662  -0.431  C09  2RI  14  
2RI  C11  C15  C  0  1  Y  N  N  18.665   6.571  -25.185   0.020   0.786   0.711  C11  2RI  15  
2RI  C12  C16  C  0  1  Y  N  N  17.846   7.636  -24.812   0.170   1.545   1.861  C12  2RI  16  
2RI  C14  C17  C  0  1  Y  N  N  16.046   6.080  -24.412  -1.025   3.296   0.763  C14  2RI  17  
2RI  C16  C18  C  0  1  Y  N  N  18.132   5.283  -25.150  -0.644   1.329  -0.373  C16  2RI  18  
2RI  C18  C19  C  0  1  Y  N  N  22.106   5.490  -26.367  -1.756  -1.084  -0.019  C18  2RI  19  
2RI  C19  C20  C  0  1  Y  N  N  22.052   4.505  -27.344  -2.552  -0.511   0.960  C19  2RI  20  
2RI  C23  C21  C  0  1  Y  N  N  25.257   4.650  -29.146  -5.631   0.429  -0.687  C23  2RI  21  
2RI  C25  C22  C  0  1  Y  N  N  27.158   4.329  -30.640  -7.803   1.203  -1.338  C25  2RI  22  
2RI  C27  C23  C  0  1  Y  N  N  25.166   2.959  -30.895  -7.085   1.443   0.941  C27  2RI  23  
2RI  C29  C24  C  0  1  Y  N  N  24.371   6.094  -27.087  -3.470  -0.731  -1.660  C29  2RI  24  
2RI  C30  C25  C  0  1  Y  N  N  23.268   6.278  -26.248  -2.216  -1.193  -1.328  C30  2RI  25  
2RI  C31  C26  C  0  1  N  N  N  21.107   5.104  -24.067  -0.236  -2.880   0.330  C31  2RI  26  
2RI  C32  C27  C  0  1  N  N  R  22.032   3.931  -23.687   1.111  -3.392   0.772  C32  2RI  27  
2RI  C34  C28  C  0  1  N  N  N  23.524   4.099  -23.847   1.263  -3.188   2.281  C34  2RI  28  
2RI  C37  C29  C  0  1  Y  N  N  20.628   7.171  -31.192   5.125   1.594   0.078  C37  2RI  29  
2RI  C38  C30  C  0  1  Y  N  N  21.539   6.475  -31.977   6.332   2.009   0.608  C38  2RI  30  
2RI  F01  F1   F  0  1  N  N  N  23.801   5.769  -32.355   8.682   1.759   0.778  F01  2RI  31  
2RI  N08  N1   N  0  1  N  N  N  20.238   8.300  -27.768   2.737   0.129  -0.341  N08  2RI  32  
2RI  N15  N2   N  0  1  Y  N  N  16.856   5.093  -24.768  -1.144   2.548  -0.316  N15  2RI  33  
2RI  N17  N3   N  0  1  N  N  N  21.073   5.796  -25.370  -0.481  -1.555   0.312  N17  2RI  34  
2RI  O21  O1   O  0  1  Y  N  N  23.345   3.472  -29.229  -4.781   0.555   1.376  O21  2RI  35  
2RI  O33  O2   O  0  1  N  N  N  21.866   3.804  -22.296   1.215  -4.784   0.467  O33  2RI  36  
2RI  O35  O3   O  0  1  N  N  N  20.311   5.388  -23.226  -1.100  -3.661  -0.010  O35  2RI  37  
2RI  O36  O4   O  0  1  N  N  N  19.502   6.132  -27.858   1.525  -1.417  -1.372  O36  2RI  38  
2RI  H1   H1   H  0  1  N  N  N  20.450   7.816  -25.222   1.027  -0.873   1.599  H1   2RI  39  
2RI  H2   H2   H  0  1  N  N  N  15.873   8.202  -24.129  -0.271   3.442   2.763  H2   2RI  40  
2RI  H3   H3   H  0  1  N  N  N  27.095   5.804  -29.065  -6.414   0.292  -2.682  H3   2RI  41  
2RI  H4   H4   H  0  1  N  N  N  26.915   2.782  -32.127  -8.984   2.081   0.212  H4   2RI  42  
2RI  H5   H5   H  0  1  N  N  N  24.363   7.088  -30.189   8.374  -0.217  -0.901  H5   2RI  43  
2RI  H6   H6   H  0  1  N  N  N  22.737   8.314  -28.797   6.222  -0.953  -1.843  H6   2RI  44  
2RI  H7   H7   H  0  1  N  N  N  19.053   8.349  -29.500   3.864  -0.945  -1.746  H7   2RI  45  
2RI  H8   H8   H  0  1  N  N  N  19.588  10.655  -28.732   3.280   2.020  -2.170  H8   2RI  46  
2RI  H9   H9   H  0  1  N  N  N  21.329  10.354  -29.054   4.143   0.959  -3.309  H9   2RI  47  
2RI  H10  H10  H  0  1  N  N  N  20.155  10.371  -30.413   2.423   0.671  -2.954  H10  2RI  48  
2RI  H11  H11  H  0  1  N  N  N  18.229   8.646  -24.824   0.691   1.150   2.721  H11  2RI  49  
2RI  H12  H12  H  0  1  N  N  N  15.028   5.870  -24.118  -1.447   4.290   0.772  H12  2RI  50  
2RI  H13  H13  H  0  1  N  N  N  18.743   4.438  -25.430  -0.755   0.748  -1.277  H13  2RI  51  
2RI  H14  H14  H  0  1  N  N  N  21.175   3.882  -27.441  -2.187  -0.429   1.973  H14  2RI  52  
2RI  H15  H15  H  0  1  N  N  N  28.156   4.591  -30.959  -8.560   1.342  -2.096  H15  2RI  53  
2RI  H16  H16  H  0  1  N  N  N  24.625   2.180  -31.412  -7.284   1.767   1.952  H16  2RI  54  
2RI  H17  H17  H  0  1  N  N  N  25.258   6.699  -26.970  -3.828  -0.817  -2.675  H17  2RI  55  
2RI  H18  H18  H  0  1  N  N  N  23.308   7.045  -25.488  -1.589  -1.642  -2.085  H18  2RI  56  
2RI  H19  H19  H  0  1  N  N  N  21.702   3.023  -24.212   1.896  -2.845   0.251  H19  2RI  57  
2RI  H20  H20  H  0  1  N  N  N  24.033   3.176  -23.534   1.056  -2.147   2.530  H20  2RI  58  
2RI  H21  H21  H  0  1  N  N  N  23.758   4.307  -24.901   0.561  -3.834   2.808  H21  2RI  59  
2RI  H22  H22  H  0  1  N  N  N  23.868   4.937  -23.223   2.281  -3.437   2.580  H22  2RI  60  
2RI  H23  H23  H  0  1  N  N  N  19.586   7.206  -31.472   4.212   2.101   0.352  H23  2RI  61  
2RI  H24  H24  H  0  1  N  N  N  21.208   5.957  -32.865   6.362   2.840   1.296  H24  2RI  62  
2RI  H25  H25  H  0  1  N  N  N  20.588   9.024  -27.173   2.837   0.733   0.411  H25  2RI  63  
2RI  H26  H26  H  0  1  N  N  N  21.166   4.377  -22.007   2.059  -5.181   0.725  H26  2RI  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2RI  F01  C02  SING  N  N   1  
2RI  C38  C02  DOUB  Y  N   2  
2RI  C38  C37  SING  Y  N   3  
2RI  C02  C03  SING  Y  N   4  
2RI  C26  C27  DOUB  Y  N   5  
2RI  C26  C25  SING  Y  N   6  
2RI  C37  C05  DOUB  Y  N   7  
2RI  C27  C22  SING  Y  N   8  
2RI  C25  C24  DOUB  Y  N   9  
2RI  C03  C04  DOUB  Y  N  10  
2RI  C05  C04  SING  Y  N  11  
2RI  C05  C06  SING  N  N  12  
2RI  C22  O21  SING  Y  N  13  
2RI  C22  C23  DOUB  Y  N  14  
2RI  C24  C23  SING  Y  N  15  
2RI  C07  C06  SING  N  N  16  
2RI  O21  C20  SING  Y  N  17  
2RI  C06  N08  SING  N  N  18  
2RI  C23  C28  SING  Y  N  19  
2RI  C20  C28  DOUB  Y  N  20  
2RI  C20  C19  SING  Y  N  21  
2RI  C28  C29  SING  Y  N  22  
2RI  O36  C09  DOUB  N  N  23  
2RI  N08  C09  SING  N  N  24  
2RI  C19  C18  DOUB  Y  N  25  
2RI  C09  C10  SING  N  N  26  
2RI  C29  C30  DOUB  Y  N  27  
2RI  C18  C30  SING  Y  N  28  
2RI  C18  N17  SING  N  N  29  
2RI  C10  N17  SING  N  N  30  
2RI  C10  C11  SING  N  N  31  
2RI  N17  C31  SING  N  N  32  
2RI  C11  C16  DOUB  Y  N  33  
2RI  C11  C12  SING  Y  N  34  
2RI  C16  N15  SING  Y  N  35  
2RI  C12  C13  DOUB  Y  N  36  
2RI  N15  C14  DOUB  Y  N  37  
2RI  C13  C14  SING  Y  N  38  
2RI  C31  C32  SING  N  N  39  
2RI  C31  O35  DOUB  N  N  40  
2RI  C34  C32  SING  N  N  41  
2RI  C32  O33  SING  N  N  42  
2RI  C10  H1   SING  N  N  43  
2RI  C13  H2   SING  N  N  44  
2RI  C24  H3   SING  N  N  45  
2RI  C26  H4   SING  N  N  46  
2RI  C03  H5   SING  N  N  47  
2RI  C04  H6   SING  N  N  48  
2RI  C06  H7   SING  N  N  49  
2RI  C07  H8   SING  N  N  50  
2RI  C07  H9   SING  N  N  51  
2RI  C07  H10  SING  N  N  52  
2RI  C12  H11  SING  N  N  53  
2RI  C14  H12  SING  N  N  54  
2RI  C16  H13  SING  N  N  55  
2RI  C19  H14  SING  N  N  56  
2RI  C25  H15  SING  N  N  57  
2RI  C27  H16  SING  N  N  58  
2RI  C29  H17  SING  N  N  59  
2RI  C30  H18  SING  N  N  60  
2RI  C32  H19  SING  N  N  61  
2RI  C34  H20  SING  N  N  62  
2RI  C34  H21  SING  N  N  63  
2RI  C34  H22  SING  N  N  64  
2RI  C37  H23  SING  N  N  65  
2RI  C38  H24  SING  N  N  66  
2RI  N08  H25  SING  N  N  67  
2RI  O33  H26  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2RI  InChI             InChI                 1.03   "InChI=1S/C30H26FN3O4/c1-18(20-9-11-22(31)12-10-20)33-29(36)28(21-6-5-15-32-17-21)34(30(37)19(2)35)23-13-14-25-24-7-3-4-8-26(24)38-27(25)16-23/h3-19,28,35H,1-2H3,(H,33,36)/t18-,19+,28+/m0/s1"  
2RI  InChIKey          InChI                 1.03   ZZPWEZVCHNBBBZ-DORSKGMSSA-N  
2RI  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O)C(=O)N([C@@H](C(=O)N[C@@H](C)c1ccc(F)cc1)c2cccnc2)c3ccc4c(oc5ccccc45)c3"  
2RI  SMILES            CACTVS                3.385  "C[CH](O)C(=O)N([CH](C(=O)N[CH](C)c1ccc(F)cc1)c2cccnc2)c3ccc4c(oc5ccccc45)c3"  
2RI  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](c1ccc(cc1)F)NC(=O)[C@@H](c2cccnc2)N(c3ccc4c5ccccc5oc4c3)C(=O)[C@@H](C)O"  
2RI  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(c1ccc(cc1)F)NC(=O)C(c2cccnc2)N(c3ccc4c5ccccc5oc4c3)C(=O)C(C)O"  
#
_pdbx_chem_comp_identifier.comp_id          2RI
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-~{N}-dibenzofuran-3-yl-~{N}-[(1~{R})-2-[[(1~{S})-1-(4-fluorophenyl)ethyl]amino]-2-oxidanylidene-1-pyridin-3-yl-ethyl]-2-oxidanyl-propanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2RI  "Create component"  2021-07-09  PDBJ  
2RI  "Initial release"   2021-07-21  RCSB  
##
