data_2YD
#

_chem_comp.id                                   2YD
_chem_comp.name                                 "(5R,6R,7S,8R,9R,12S,13E,16S,18S,19R,20aR)-4,7,19-trihydroxy-2,6,8,12,14,16,18-heptamethyl-6,7,8,9,10,11,12,15,16,17,18,19,20,20a-tetradecahydro-1,19:5,9-diepoxybenzo[18]annulen-3(5H)-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H44 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Kendomycin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-05-01
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       488.656
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2YD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4Q1S
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2YD  O1   O1   O  0  1  N  N  N  75.861  -145.584  57.902   4.332   0.723  -0.162  O1   2YD   1  
2YD  C1   C1   C  0  1  N  N  N  75.006  -146.205  58.718   3.454  -0.311  -0.080  C1   2YD   2  
2YD  C    C    C  0  1  N  N  N  73.768  -146.743  58.120   3.976  -1.655  -0.417  C    2YD   3  
2YD  O    O    O  0  1  N  N  N  73.546  -146.483  56.951   5.182  -1.815  -0.466  O    2YD   4  
2YD  C2   C2   C  0  1  N  N  N  75.275  -146.368  60.033   2.166  -0.155   0.275  C2   2YD   5  
2YD  C3   C3   C  0  1  N  N  R  74.459  -147.405  60.796   1.375  -1.431   0.394  C3   2YD   6  
2YD  C22  C22  C  0  1  N  N  R  76.507  -145.785  60.715   1.502   1.158   0.582  C22  2YD   7  
2YD  C23  C23  C  0  1  N  N  R  76.282  -144.627  61.737   2.459   2.299   0.880  C23  2YD   8  
2YD  C27  C27  C  0  1  N  N  N  75.610  -143.368  61.110   3.201   2.013   2.195  C27  2YD   9  
2YD  C24  C24  C  0  1  N  N  S  77.654  -144.336  62.449   1.713   3.627   1.059  C24  2YD  10  
2YD  O5   O5   O  0  1  N  N  N  77.494  -143.329  63.475   2.663   4.697   1.078  O5   2YD  11  
2YD  C25  C25  C  0  1  N  N  R  78.336  -145.622  63.059   0.716   3.859  -0.076  C25  2YD  12  
2YD  C26  C26  C  0  1  N  N  N  77.706  -146.111  64.405   1.467   4.031  -1.399  C26  2YD  13  
2YD  O4   O4   O  0  1  N  N  N  77.095  -146.919  61.392   0.611   1.508  -0.488  O4   2YD  14  
2YD  C21  C21  C  0  1  N  N  R  78.394  -146.743  61.964  -0.204   2.639  -0.155  C21  2YD  15  
2YD  C20  C20  C  0  1  N  N  N  78.752  -148.181  62.450  -1.323   2.842  -1.162  C20  2YD  16  
2YD  C19  C19  C  0  1  N  N  N  78.832  -149.199  61.280  -2.668   2.818  -0.421  C19  2YD  17  
2YD  C17  C17  C  0  1  N  N  S  79.049  -150.681  61.756  -3.739   2.241  -1.342  C17  2YD  18  
2YD  C18  C18  C  0  1  N  N  N  79.369  -151.564  60.508  -5.067   2.972  -1.150  C18  2YD  19  
2YD  C16  C16  C  0  1  N  N  N  77.871  -151.313  62.515  -3.882   0.761  -1.171  C16  2YD  20  
2YD  C15  C15  C  0  1  N  N  N  77.647  -151.545  63.848  -4.279   0.142  -0.095  C15  2YD  21  
2YD  C28  C28  C  0  1  N  N  N  78.635  -151.244  64.964  -4.660   0.847   1.181  C28  2YD  22  
2YD  C14  C14  C  0  1  N  N  N  76.321  -152.109  64.399  -4.377  -1.371  -0.140  C14  2YD  23  
2YD  C12  C12  C  0  1  N  N  S  75.031  -152.022  63.508  -3.411  -1.989   0.877  C12  2YD  24  
2YD  C13  C13  C  0  1  N  N  N  73.852  -152.786  64.178  -4.206  -2.318   2.149  C13  2YD  25  
2YD  C11  C11  C  0  1  N  N  N  74.684  -150.513  63.234  -2.827  -3.281   0.319  C11  2YD  26  
2YD  C9   C9   C  0  1  N  N  S  73.710  -150.175  62.065  -1.337  -3.421   0.585  C9   2YD  27  
2YD  C10  C10  C  0  1  N  N  N  74.332  -150.549  60.687  -0.970  -3.106   2.028  C10  2YD  28  
2YD  C5   C5   C  0  1  N  N  R  73.096  -148.723  62.232  -0.499  -2.642  -0.416  C5   2YD  29  
2YD  C4   C4   C  0  1  N  N  N  74.014  -147.447  62.273  -0.099  -1.230   0.045  C4   2YD  30  
2YD  O2   O2   O  0  1  N  N  N  72.211  -148.734  63.377  -1.214  -2.534  -1.663  O2   2YD  31  
2YD  O3   O3   O  0  1  N  N  N  72.316  -148.377  61.075   0.734  -3.377  -0.683  O3   2YD  32  
2YD  C6   C6   C  0  1  N  N  N  73.118  -147.722  60.208   1.813  -2.647  -0.385  C6   2YD  33  
2YD  C7   C7   C  0  1  N  N  N  72.808  -147.531  58.919   3.122  -2.744  -0.680  C7   2YD  34  
2YD  C8   C8   C  0  1  N  N  N  71.494  -148.020  58.360   3.667  -4.009  -1.284  C8   2YD  35  
2YD  H1   H1   H  0  1  N  N  N  75.494  -145.547  57.027   5.223   0.461  -0.430  H1   2YD  36  
2YD  H4   H4   H  0  1  N  N  N  75.033  -148.335  60.671   1.412  -1.707   1.459  H4   2YD  37  
2YD  H5   H5   H  0  1  N  N  N  77.197  -145.423  59.938   0.873   1.005   1.481  H5   2YD  38  
2YD  H6   H6   H  0  1  N  N  N  75.596  -145.008  62.508   3.182   2.426   0.076  H6   2YD  39  
2YD  H7   H7   H  0  1  N  N  N  75.483  -142.596  61.883   3.761   1.083   2.101  H7   2YD  40  
2YD  H8   H8   H  0  1  N  N  N  76.246  -142.977  60.303   3.888   2.832   2.410  H8   2YD  41  
2YD  H9   H9   H  0  1  N  N  N  74.627  -143.643  60.701   2.479   1.922   3.007  H9   2YD  42  
2YD  H10  H10  H  0  1  N  N  N  78.338  -143.946  61.681   1.176   3.606   2.010  H10  2YD  43  
2YD  H11  H11  H  0  1  N  N  N  78.331  -143.167  63.893   3.314   4.633   1.791  H11  2YD  44  
2YD  H12  H12  H  0  1  N  N  N  79.378  -145.347  63.281   0.123   4.750   0.127  H12  2YD  45  
2YD  H13  H13  H  0  1  N  N  N  77.694  -145.282  65.128   2.046   3.132  -1.608  H13  2YD  46  
2YD  H14  H14  H  0  1  N  N  N  76.677  -146.454  64.225   0.750   4.196  -2.204  H14  2YD  47  
2YD  H15  H15  H  0  1  N  N  N  78.304  -146.941  64.809   2.137   4.887  -1.328  H15  2YD  48  
2YD  H16  H16  H  0  1  N  N  N  79.117  -146.442  61.191  -0.637   2.466   0.836  H16  2YD  49  
2YD  H17  H17  H  0  1  N  N  N  77.980  -148.517  63.158  -1.214   3.807  -1.661  H17  2YD  50  
2YD  H18  H18  H  0  1  N  N  N  79.727  -148.150  62.958  -1.308   2.045  -1.907  H18  2YD  51  
2YD  H19  H19  H  0  1  N  N  N  79.671  -148.916  60.628  -2.562   2.221   0.482  H19  2YD  52  
2YD  H20  H20  H  0  1  N  N  N  77.892  -149.150  60.710  -2.934   3.845  -0.150  H20  2YD  53  
2YD  H21  H21  H  0  1  N  N  N  79.930  -150.696  62.415  -3.417   2.431  -2.385  H21  2YD  54  
2YD  H22  H22  H  0  1  N  N  N  79.524  -152.606  60.825  -4.937   4.030  -1.380  H22  2YD  55  
2YD  H23  H23  H  0  1  N  N  N  78.528  -151.517  59.801  -5.817   2.545  -1.816  H23  2YD  56  
2YD  H24  H24  H  0  1  N  N  N  80.281  -151.191  60.019  -5.396   2.864  -0.116  H24  2YD  57  
2YD  H25  H25  H  0  1  N  N  N  77.064  -151.637  61.875  -3.631   0.131  -2.039  H25  2YD  58  
2YD  H26  H26  H  0  1  N  N  N  78.195  -151.529  65.931  -4.549   1.923   1.048  H26  2YD  59  
2YD  H27  H27  H  0  1  N  N  N  79.560  -151.816  64.799  -5.696   0.616   1.429  H27  2YD  60  
2YD  H28  H28  H  0  1  N  N  N  78.866  -150.168  64.969  -4.010   0.512   1.990  H28  2YD  61  
2YD  H29  H29  H  0  1  N  N  N  76.105  -151.571  65.334  -5.397  -1.662   0.113  H29  2YD  62  
2YD  H30  H30  H  0  1  N  N  N  76.490  -153.173  64.620  -4.137  -1.722  -1.140  H30  2YD  63  
2YD  H31  H31  H  0  1  N  N  N  75.249  -152.503  62.543  -2.631  -1.275   1.106  H31  2YD  64  
2YD  H32  H32  H  0  1  N  N  N  74.143  -153.833  64.349  -5.001  -3.024   1.908  H32  2YD  65  
2YD  H33  H33  H  0  1  N  N  N  73.608  -152.312  65.140  -3.540  -2.760   2.890  H33  2YD  66  
2YD  H34  H34  H  0  1  N  N  N  72.972  -152.753  63.519  -4.642  -1.404   2.552  H34  2YD  67  
2YD  H35  H35  H  0  1  N  N  N  75.632  -149.994  63.028  -3.347  -4.128   0.793  H35  2YD  68  
2YD  H36  H36  H  0  1  N  N  N  74.238  -150.110  64.155  -3.032  -3.343  -0.751  H36  2YD  69  
2YD  H37  H37  H  0  1  N  N  N  72.858  -150.859  62.192  -1.090  -4.497   0.425  H37  2YD  70  
2YD  H38  H38  H  0  1  N  N  N  74.714  -151.580  60.724  -1.124  -2.044   2.219  H38  2YD  71  
2YD  H39  H39  H  0  1  N  N  N  73.563  -150.471  59.904  -1.599  -3.690   2.699  H39  2YD  72  
2YD  H40  H40  H  0  1  N  N  N  75.159  -149.860  60.459   0.077  -3.358   2.201  H40  2YD  73  
2YD  H41  H41  H  0  1  N  N  N  74.867  -147.577  62.955  -0.678  -0.861   0.884  H41  2YD  74  
2YD  H42  H42  H  0  1  N  N  N  73.451  -146.546  62.558  -0.199  -0.517  -0.790  H42  2YD  75  
2YD  H43  H43  H  0  1  N  N  N  72.704  -148.961  64.157  -0.737  -2.048  -2.349  H43  2YD  76  
2YD  H44  H44  H  0  1  N  N  N  70.951  -148.581  59.135   4.739  -3.901  -1.449  H44  2YD  77  
2YD  H45  H45  H  0  1  N  N  N  70.889  -147.159  58.039   3.486  -4.843  -0.606  H45  2YD  78  
2YD  H46  H46  H  0  1  N  N  N  71.684  -148.676  57.498   3.171  -4.201  -2.236  H46  2YD  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2YD  O    C    DOUB  N  N   1  
2YD  O1   C1   SING  N  N   2  
2YD  C    C1   SING  N  N   3  
2YD  C    C7   SING  N  N   4  
2YD  C8   C7   SING  N  N   5  
2YD  C1   C2   DOUB  N  N   6  
2YD  C7   C6   DOUB  N  N   7  
2YD  C2   C22  SING  N  N   8  
2YD  C2   C3   SING  N  N   9  
2YD  C6   C3   SING  N  N  10  
2YD  C6   O3   SING  N  N  11  
2YD  C18  C17  SING  N  N  12  
2YD  C10  C9   SING  N  N  13  
2YD  C22  O4   SING  N  N  14  
2YD  C22  C23  SING  N  N  15  
2YD  C3   C4   SING  N  N  16  
2YD  O3   C5   SING  N  N  17  
2YD  C27  C23  SING  N  N  18  
2YD  C19  C17  SING  N  N  19  
2YD  C19  C20  SING  N  N  20  
2YD  O4   C21  SING  N  N  21  
2YD  C23  C24  SING  N  N  22  
2YD  C17  C16  SING  N  N  23  
2YD  C21  C20  SING  N  N  24  
2YD  C21  C25  SING  N  N  25  
2YD  C9   C5   SING  N  N  26  
2YD  C9   C11  SING  N  N  27  
2YD  C5   C4   SING  N  N  28  
2YD  C5   O2   SING  N  N  29  
2YD  C24  C25  SING  N  N  30  
2YD  C24  O5   SING  N  N  31  
2YD  C16  C15  DOUB  N  E  32  
2YD  C25  C26  SING  N  N  33  
2YD  C11  C12  SING  N  N  34  
2YD  C12  C13  SING  N  N  35  
2YD  C12  C14  SING  N  N  36  
2YD  C15  C14  SING  N  N  37  
2YD  C15  C28  SING  N  N  38  
2YD  O1   H1   SING  N  N  39  
2YD  C3   H4   SING  N  N  40  
2YD  C22  H5   SING  N  N  41  
2YD  C23  H6   SING  N  N  42  
2YD  C27  H7   SING  N  N  43  
2YD  C27  H8   SING  N  N  44  
2YD  C27  H9   SING  N  N  45  
2YD  C24  H10  SING  N  N  46  
2YD  O5   H11  SING  N  N  47  
2YD  C25  H12  SING  N  N  48  
2YD  C26  H13  SING  N  N  49  
2YD  C26  H14  SING  N  N  50  
2YD  C26  H15  SING  N  N  51  
2YD  C21  H16  SING  N  N  52  
2YD  C20  H17  SING  N  N  53  
2YD  C20  H18  SING  N  N  54  
2YD  C19  H19  SING  N  N  55  
2YD  C19  H20  SING  N  N  56  
2YD  C17  H21  SING  N  N  57  
2YD  C18  H22  SING  N  N  58  
2YD  C18  H23  SING  N  N  59  
2YD  C18  H24  SING  N  N  60  
2YD  C16  H25  SING  N  N  61  
2YD  C28  H26  SING  N  N  62  
2YD  C28  H27  SING  N  N  63  
2YD  C28  H28  SING  N  N  64  
2YD  C14  H29  SING  N  N  65  
2YD  C14  H30  SING  N  N  66  
2YD  C12  H31  SING  N  N  67  
2YD  C13  H32  SING  N  N  68  
2YD  C13  H33  SING  N  N  69  
2YD  C13  H34  SING  N  N  70  
2YD  C11  H35  SING  N  N  71  
2YD  C11  H36  SING  N  N  72  
2YD  C9   H37  SING  N  N  73  
2YD  C10  H38  SING  N  N  74  
2YD  C10  H39  SING  N  N  75  
2YD  C10  H40  SING  N  N  76  
2YD  C4   H41  SING  N  N  77  
2YD  C4   H42  SING  N  N  78  
2YD  O2   H43  SING  N  N  79  
2YD  C8   H44  SING  N  N  80  
2YD  C8   H45  SING  N  N  81  
2YD  C8   H46  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2YD  SMILES            ACDLabs               12.01  "O=C1C(=C2OC3(O)C(CC(CC(=CC(C)CCC4OC(C(=C1O)C2C3)C(C)C(O)C4C)C)C)C)C"  
2YD  InChI             InChI                 1.03   "InChI=1S/C29H44O6/c1-14-8-9-22-18(5)24(30)19(6)28(34-22)23-21-13-29(33,17(4)12-16(3)11-15(2)10-14)35-27(21)20(7)25(31)26(23)32/h10,14,16-19,21-22,24,28,30,32-33H,8-9,11-13H2,1-7H3/b15-10+/t14-,16+,17-,18-,19+,21+,22+,24-,28+,29+/m0/s1"  
2YD  InChIKey          InChI                 1.03   YTIDBLWNOPLNOU-XOIIUOJKSA-N  
2YD  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1C[C@H](C)[C@@]2(O)C[C@H]3C(=C(C)C(=O)C(=C3[C@@H]4O[C@H](CC[C@H](C)\C=C(/C)C1)[C@H](C)[C@H](O)[C@H]4C)O)O2"  
2YD  SMILES            CACTVS                3.385  "C[CH]1C[CH](C)[C]2(O)C[CH]3C(=C(C)C(=O)C(=C3[CH]4O[CH](CC[CH](C)C=C(C)C1)[CH](C)[CH](O)[CH]4C)O)O2"  
2YD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[C@H]\1CC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)C3=C(C(=O)C(=C4[C@@H]3C[C@@](O4)([C@H](C[C@@H](C/C(=C1)/C)C)C)O)C)O)C)O)C"  
2YD  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1CCC2C(C(C(C(O2)C3=C(C(=O)C(=C4C3CC(O4)(C(CC(CC(=C1)C)C)C)O)C)O)C)O)C"  
#
_pdbx_chem_comp_identifier.comp_id          2YD
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(5R,6R,7S,8R,9R,12S,13E,16S,18S,19R,20aR)-4,7,19-trihydroxy-2,6,8,12,14,16,18-heptamethyl-6,7,8,9,10,11,12,15,16,17,18,19,20,20a-tetradecahydro-1,19:5,9-diepoxybenzo[18]annulen-3(5H)-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2YD  "Create component"  2014-05-01  RCSB  
2YD  "Initial release"   2014-07-30  RCSB  
2YD  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2YD
_pdbx_chem_comp_synonyms.name        Kendomycin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
