data_3LU
#

_chem_comp.id                                   3LU
_chem_comp.name                                 
;1-({(2R)-4-carboxy-2-[(R)-carboxy{[(2R)-2-phenyl-2-sulfoacetyl]amino}methyl]-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyr
idinium
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H22 N3 O8 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Cefsulodin, bound form"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2014-09-19
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       508.545
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3LU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4RDD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3LU  S1   S1   S  0  1  N  N  N  24.330   5.446   1.352   4.324  -1.932  -0.024  S1   3LU   1  
3LU  C1   C1   C  0  1  Y  N  N  26.606   9.301   2.581   6.813   1.956  -1.639  C1   3LU   2  
3LU  C2   C2   C  0  1  Y  N  N  27.647   8.911   3.424   7.371   2.224  -0.403  C2   3LU   3  
3LU  C3   C3   C  0  1  Y  N  N  28.096   7.588   3.420   6.819   1.674   0.739  C3   3LU   4  
3LU  C4   C4   C  0  1  Y  N  N  26.446   7.047   1.721   5.145   0.596  -0.590  C4   3LU   5  
3LU  C5   C5   C  0  1  N  N  R  25.821   6.019   0.816   3.932  -0.292  -0.692  C5   3LU   6  
3LU  C6   C6   C  0  1  N  N  N  25.770   6.506  -0.611   2.798   0.314   0.095  C6   3LU   7  
3LU  C7   C7   C  0  1  N  N  R  27.992   7.747  -2.879  -0.800   0.852  -0.428  C7   3LU   8  
3LU  C8   C8   C  0  1  N  N  N  31.416   7.167  -1.338  -4.189   2.288   0.494  C8   3LU   9  
3LU  C9   C9   C  0  1  N  N  N  29.084  10.069  -1.840  -2.860  -0.332  -1.937  C9   3LU  10  
3LU  C10  C10  C  0  1  N  N  N  29.897   9.050  -1.088  -3.670   0.637  -1.126  C10  3LU  11  
3LU  C11  C11  C  0  1  Y  N  N  26.017   8.371   1.728   5.700   1.142  -1.732  C11  3LU  12  
3LU  N1   N1   N  0  1  N  N  N  26.819   6.224  -1.362   1.523   0.101  -0.287  N1   3LU  13  
3LU  O1   O1   O  0  1  N  N  N  24.605   4.541   2.485   4.715  -1.668   1.423  O1   3LU  14  
3LU  N3   N3   N  0  1  N  N  N  29.257   7.201  -2.400  -1.912   1.442   0.331  N3   3LU  15  
3LU  O2   O2   O  0  1  N  N  N  23.424   6.507   1.839   3.150  -2.727   0.070  O2   3LU  16  
3LU  S2   S2   S  0  1  N  N  N  27.550   9.246  -2.049  -1.357  -0.781  -1.016  S2   3LU  17  
3LU  O3   O3   O  0  1  N  N  N  23.716   4.661   0.238   5.509  -2.443  -0.619  O3   3LU  18  
3LU  O4   O4   O  0  1  N  N  N  24.822   7.144  -1.039   3.034   0.992   1.072  O4   3LU  19  
3LU  C12  C12  C  0  1  Y  N  N  27.493   6.669   2.568   5.710   0.855   0.645  C12  3LU  20  
3LU  O5   O5   O  0  1  N  N  N  26.554   4.477  -3.479  -0.913   0.127   2.477  O5   3LU  21  
3LU  O6   O6   O  0  1  N  N  N  27.633   5.831  -4.821   0.684  -1.243   1.801  O6   3LU  22  
3LU  O7   O7   O  0  1  N  N  N  32.487   7.719  -1.676  -4.628   2.014   1.594  O7   3LU  23  
3LU  O8   O8   O  0  1  N  N  N  31.399   6.048  -0.776  -4.594   3.410  -0.132  O8   3LU  24  
3LU  C13  C13  C  0  1  N  N  R  26.883   6.707  -2.727   0.422   0.690   0.478  C13  3LU  25  
3LU  C14  C14  C  0  1  N  N  N  27.043   5.600  -3.735   0.074  -0.213   1.634  C14  3LU  26  
3LU  C15  C15  C  0  1  N  N  N  30.145   7.840  -1.618  -3.213   1.393  -0.154  C15  3LU  27  
3LU  C16  C16  C  0  1  N  N  N  30.388   9.391   0.286  -5.136   0.754  -1.456  C16  3LU  28  
3LU  H1   H1   H  0  1  N  N  N  26.257  10.323   2.590   7.245   2.386  -2.530  H1   3LU  29  
3LU  H2   H2   H  0  1  N  N  N  28.107   9.634   4.081   8.238   2.864  -0.329  H2   3LU  30  
3LU  H3   H3   H  0  1  N  N  N  28.902   7.283   4.071   7.256   1.883   1.705  H3   3LU  31  
3LU  H4   H4   H  0  1  N  N  N  26.483   5.141   0.828   3.638  -0.387  -1.738  H4   3LU  32  
3LU  H5   H5   H  0  1  N  N  N  28.085   8.007  -3.944  -0.550   1.488  -1.277  H5   3LU  33  
3LU  H6   H6   H  0  1  N  N  N  29.543  10.307  -2.811  -3.450  -1.228  -2.128  H6   3LU  34  
3LU  H7   H7   H  0  1  N  N  N  28.964  10.993  -1.255  -2.582   0.130  -2.884  H7   3LU  35  
3LU  H9   H9   H  0  1  N  N  N  25.221   8.680   1.067   5.259   0.939  -2.697  H9   3LU  36  
3LU  H10  H10  H  0  1  N  N  N  27.569   5.677  -0.989   1.335  -0.441  -1.069  H10  3LU  37  
3LU  H11  H11  H  0  1  N  N  N  27.839   5.646   2.560   5.276   0.428   1.537  H11  3LU  38  
3LU  H12  H12  H  0  1  N  N  N  26.708   3.890  -4.210  -1.100  -0.484   3.203  H12  3LU  39  
3LU  H13  H13  H  0  1  N  N  N  32.289   5.733  -0.669  -5.234   3.966   0.332  H13  3LU  40  
3LU  H14  H14  H  0  1  N  N  N  25.934   7.216  -2.950   0.724   1.666   0.858  H14  3LU  41  
3LU  H15  H15  H  0  1  N  N  N  29.529   9.599   0.941  -5.276   0.646  -2.532  H15  3LU  42  
3LU  N2   N2   N  1  1  Y  N  N  31.034  10.280   0.234  -5.879  -0.299  -0.759  N2   3LU  43  
3LU  H17  H17  H  0  1  N  N  N  30.961   8.544   0.691  -5.503   1.730  -1.138  H17  3LU  44  
3LU  H8   H8   H  0  1  N  N  N  24.141   4.847   3.255   4.955  -2.464   1.917  H8   3LU  45  
3LU  C19  C19  C  0  1  Y  N  N       ?       ?       ?  -6.461  -0.020   0.391  C19  3LU  46  
3LU  C17  C17  C  0  1  Y  N  N       ?       ?       ?  -7.171  -0.987   1.077  C17  3LU  47  
3LU  C20  C20  C  0  1  Y  N  N       ?       ?       ?  -7.266  -2.263   0.541  C20  3LU  48  
3LU  C21  C21  C  0  1  Y  N  N       ?       ?       ?  -6.641  -2.518  -0.670  C21  3LU  49  
3LU  C22  C22  C  0  1  Y  N  N       ?       ?       ?  -5.952  -1.499  -1.301  C22  3LU  50  
3LU  H16  H16  H  0  1  N  N  N       ?       ?       ?  -6.383   0.976   0.801  H16  3LU  51  
3LU  H18  H18  H  0  1  N  N  N       ?       ?       ?  -7.645  -0.753   2.018  H18  3LU  52  
3LU  H19  H19  H  0  1  N  N  N       ?       ?       ?  -7.813  -3.039   1.055  H19  3LU  53  
3LU  H20  H20  H  0  1  N  N  N       ?       ?       ?  -6.693  -3.500  -1.116  H20  3LU  54  
3LU  H21  H21  H  0  1  N  N  N       ?       ?       ?  -5.463  -1.689  -2.244  H21  3LU  55  
3LU  H22  H22  H  0  1  N  N  N  29.012   6.373  -1.896  -1.735   1.872   1.182  H22  3LU  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3LU  O6   C14  DOUB  N  N   1  
3LU  C14  O5   SING  N  N   2  
3LU  C14  C13  SING  N  N   3  
3LU  C7   C13  SING  N  N   4  
3LU  C7   N3   SING  N  N   5  
3LU  C7   S2   SING  N  N   6  
3LU  C13  N1   SING  N  N   7  
3LU  N3   C15  SING  N  N   8  
3LU  S2   C9   SING  N  N   9  
3LU  C9   C10  SING  N  N  10  
3LU  O7   C8   DOUB  N  N  11  
3LU  C15  C8   SING  N  N  12  
3LU  C15  C10  DOUB  N  N  13  
3LU  N1   C6   SING  N  N  14  
3LU  C8   O8   SING  N  N  15  
3LU  C10  C16  SING  N  N  16  
3LU  O4   C6   DOUB  N  N  17  
3LU  C6   C5   SING  N  N  18  
3LU  O3   S1   DOUB  N  N  19  
3LU  C5   S1   SING  N  N  20  
3LU  C5   C4   SING  N  N  21  
3LU  S1   O2   DOUB  N  N  22  
3LU  S1   O1   SING  N  N  23  
3LU  C4   C11  DOUB  Y  N  24  
3LU  C4   C12  SING  Y  N  25  
3LU  C11  C1   SING  Y  N  26  
3LU  C12  C3   DOUB  Y  N  27  
3LU  C1   C2   DOUB  Y  N  28  
3LU  C3   C2   SING  Y  N  29  
3LU  C1   H1   SING  N  N  30  
3LU  C2   H2   SING  N  N  31  
3LU  C3   H3   SING  N  N  32  
3LU  C5   H4   SING  N  N  33  
3LU  C7   H5   SING  N  N  34  
3LU  C9   H6   SING  N  N  35  
3LU  C9   H7   SING  N  N  36  
3LU  C11  H9   SING  N  N  37  
3LU  N1   H10  SING  N  N  38  
3LU  C12  H11  SING  N  N  39  
3LU  O5   H12  SING  N  N  40  
3LU  O8   H13  SING  N  N  41  
3LU  C13  H14  SING  N  N  42  
3LU  C16  H15  SING  N  N  43  
3LU  C16  N2   SING  N  N  44  
3LU  C16  H17  SING  N  N  45  
3LU  O1   H8   SING  N  N  46  
3LU  N2   C19  SING  Y  N  47  
3LU  C19  C17  DOUB  Y  N  48  
3LU  C17  C20  SING  Y  N  49  
3LU  C20  C21  DOUB  Y  N  50  
3LU  C21  C22  SING  Y  N  51  
3LU  C22  N2   DOUB  Y  N  52  
3LU  C19  H16  SING  N  N  53  
3LU  C17  H18  SING  N  N  54  
3LU  C20  H19  SING  N  N  55  
3LU  C21  H20  SING  N  N  56  
3LU  C22  H21  SING  N  N  57  
3LU  N3   H22  SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3LU  SMILES            ACDLabs               12.01  "O=S(=O)(O)C(c1ccccc1)C(=O)NC(C(=O)O)C2SCC(=C(N2)C(=O)O)C[n+]3ccccc3"  
3LU  InChI             InChI                 1.03   "InChI=1S/C21H21N3O8S2/c25-18(17(34(30,31)32)13-7-3-1-4-8-13)22-16(21(28)29)19-23-15(20(26)27)14(12-33-19)11-24-9-5-2-6-10-24/h1-10,16-17,19,23H,11-12H2,(H3-,22,25,26,27,28,29,30,31,32)/p+1/t16-,17+,19+/m0/s1"  
3LU  InChIKey          InChI                 1.03   UZIDEBFKNVWIPU-YQVWRLOYSA-O  
3LU  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)[C@@H](NC(=O)[C@@H](c1ccccc1)[S](O)(=O)=O)[C@@H]2NC(=C(CS2)C[n+]3ccccc3)C(O)=O"  
3LU  SMILES            CACTVS                3.385  "OC(=O)[CH](NC(=O)[CH](c1ccccc1)[S](O)(=O)=O)[CH]2NC(=C(CS2)C[n+]3ccccc3)C(O)=O"  
3LU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1ccc(cc1)[C@H](C(=O)N[C@@H]([C@@H]2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O)S(=O)(=O)O"  
3LU  SMILES            "OpenEye OEToolkits"  1.7.6  "c1ccc(cc1)C(C(=O)NC(C2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O)S(=O)(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3LU  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-({(2R)-4-carboxy-2-[(R)-carboxy{[(2R)-2-phenyl-2-sulfoacetyl]amino}methyl]-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyridinium"  
3LU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R)-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-[[(2R)-2-phenyl-2-sulfo-ethanoyl]amino]ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3LU  "Create component"    2014-09-19  RCSB  
3LU  "Other modification"  2014-09-23  RCSB  
3LU  "Other modification"  2014-12-11  RCSB  
3LU  "Initial release"     2015-07-01  RCSB  
3LU  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3LU
_pdbx_chem_comp_synonyms.name        "Cefsulodin, bound form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
