data_4DU
# 
_chem_comp.id                                    4DU 
_chem_comp.name                                  "1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-imidazo[4,5-c]pyridin-4-amine" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H15 N4 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-03-28 
_chem_comp.pdbx_modified_date                    2012-05-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        330.234 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4DU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DU3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4DU OP2   OP2   O 0 1 N N N 1.183  0.320  35.319 -5.749 0.042  -0.313 OP2   4DU 1  
4DU P     P     P 0 1 N N N 1.611  -1.039 36.164 -4.726 -0.902 0.190  P     4DU 2  
4DU OP1   OP1   O 0 1 N Y N 1.875  -2.518 35.475 -4.440 -2.028 -0.924 OP1   4DU 3  
4DU "O5'" "O5'" O 0 1 N N N 1.328  -1.046 37.847 -3.366 -0.100 0.505  "O5'" 4DU 4  
4DU "C5'" "C5'" C 0 1 N N N 1.531  -2.193 38.649 -2.701 0.715  -0.463 "C5'" 4DU 5  
4DU "C4'" "C4'" C 0 1 N N R 1.009  -1.763 40.010 -1.446 1.327  0.162  "C4'" 4DU 6  
4DU "C3'" "C3'" C 0 1 N N S -0.495 -1.602 39.985 -0.710 2.228  -0.862 "C3'" 4DU 7  
4DU "O3'" "O3'" O 0 1 N N N -1.109 -2.874 40.145 -1.243 3.554  -0.850 "O3'" 4DU 8  
4DU "C2'" "C2'" C 0 1 N N N -0.765 -0.649 41.134 0.741  2.212  -0.324 "C2'" 4DU 9  
4DU "C1'" "C1'" C 0 1 N N R 0.475  0.216  41.135 0.804  0.948  0.555  "C1'" 4DU 10 
4DU "O4'" "O4'" O 0 1 N N N 1.472  -0.458 40.347 -0.477 0.302  0.467  "O4'" 4DU 11 
4DU N9    N9    N 0 1 Y N N 0.179  1.547  40.544 1.853  0.051  0.064  N9    4DU 12 
4DU C4    C4    C 0 1 Y N N -0.458 2.554  41.146 3.189  0.110  0.379  C4    4DU 13 
4DU C3    C3    C 0 1 Y N N -0.986 2.695  42.329 3.980  0.930  1.181  C3    4DU 14 
4DU C2    C2    C 0 1 Y N N -1.562 3.802  42.696 5.322  0.686  1.261  C2    4DU 15 
4DU N1    N1    N 0 1 Y N N -1.637 4.869  41.865 5.885  -0.310 0.594  N1    4DU 16 
4DU C6    C6    C 0 1 Y N N -1.106 4.797  40.617 5.188  -1.122 -0.183 C6    4DU 17 
4DU N6    N6    N 0 1 N N N -1.171 5.842  39.746 5.826  -2.152 -0.861 N6    4DU 18 
4DU C5    C5    C 0 1 Y N N -0.499 3.605  40.232 3.803  -0.942 -0.321 C5    4DU 19 
4DU N7    N7    N 0 1 Y N N 0.112  3.203  39.094 2.827  -1.577 -1.015 N7    4DU 20 
4DU C8    C8    C 0 1 Y N N 0.522  1.936  39.301 1.684  -1.000 -0.787 C8    4DU 21 
4DU O1    O1    O 0 1 N Y N 3.193  -0.765 36.364 -5.260 -1.603 1.537  O1    4DU 22 
4DU H1T   H1T   H 0 1 N Y N 1.743  -2.459 34.536 -3.778 -2.682 -0.662 H1T   4DU 23 
4DU H2    H2    H 0 1 N N N 0.962  -3.051 38.261 -2.418 0.103  -1.320 H2    4DU 24 
4DU H3    H3    H 0 1 N N N 2.598  -2.454 38.701 -3.370 1.511  -0.789 H3    4DU 25 
4DU H4    H4    H 0 1 N N N 1.297  -2.500 40.774 -1.702 1.892  1.059  H4    4DU 26 
4DU H5    H5    H 0 1 N N N -0.801 -1.134 39.038 -0.760 1.800  -1.863 H5    4DU 27 
4DU H6    H6    H 0 1 N N N -2.054 -2.774 40.129 -0.815 4.156  -1.475 H6    4DU 28 
4DU H7    H7    H 0 1 N N N -1.669 -0.049 40.950 1.452  2.140  -1.147 H7    4DU 29 
4DU H8    H8    H 0 1 N N N -0.873 -1.192 42.085 0.937  3.102  0.274  H8    4DU 30 
4DU H9    H9    H 0 1 N N N 0.828  0.342  42.169 1.009  1.225  1.589  H9    4DU 31 
4DU H10   H10   H 0 1 N N N -0.944 1.870  43.024 3.539  1.748  1.732  H10   4DU 32 
4DU H11   H11   H 0 1 N N N -1.990 3.872  43.685 5.938  1.320  1.881  H11   4DU 33 
4DU H12   H12   H 0 1 N N N -1.649 6.607  40.178 6.784  -2.276 -0.765 H12   4DU 34 
4DU H13   H13   H 0 1 N N N -0.245 6.126  39.496 5.315  -2.747 -1.431 H13   4DU 35 
4DU H14   H14   H 0 1 N N N 1.046  1.326  38.580 0.740  -1.305 -1.214 H14   4DU 36 
4DU H15   H15   H 0 1 N N N 3.425  0.062  35.959 -6.078 -2.105 1.422  H15   4DU 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4DU OP2   P     DOUB N N 1  
4DU OP1   P     SING N N 2  
4DU P     "O5'" SING N N 3  
4DU "O5'" "C5'" SING N N 4  
4DU "C5'" "C4'" SING N N 5  
4DU N7    C8    DOUB Y N 6  
4DU N7    C5    SING Y N 7  
4DU C8    N9    SING Y N 8  
4DU N6    C6    SING N N 9  
4DU "C3'" "C4'" SING N N 10 
4DU "C3'" "O3'" SING N N 11 
4DU "C3'" "C2'" SING N N 12 
4DU "C4'" "O4'" SING N N 13 
4DU C5    C6    DOUB Y N 14 
4DU C5    C4    SING Y N 15 
4DU "O4'" "C1'" SING N N 16 
4DU N9    "C1'" SING N N 17 
4DU N9    C4    SING Y N 18 
4DU C6    N1    SING Y N 19 
4DU "C2'" "C1'" SING N N 20 
4DU C4    C3    DOUB Y N 21 
4DU N1    C2    DOUB Y N 22 
4DU C3    C2    SING Y N 23 
4DU P     O1    SING N N 24 
4DU OP1   H1T   SING N N 25 
4DU "C5'" H2    SING N N 26 
4DU "C5'" H3    SING N N 27 
4DU "C4'" H4    SING N N 28 
4DU "C3'" H5    SING N N 29 
4DU "O3'" H6    SING N N 30 
4DU "C2'" H7    SING N N 31 
4DU "C2'" H8    SING N N 32 
4DU "C1'" H9    SING N N 33 
4DU C3    H10   SING N N 34 
4DU C2    H11   SING N N 35 
4DU N6    H12   SING N N 36 
4DU N6    H13   SING N N 37 
4DU C8    H14   SING N N 38 
4DU O1    H15   SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4DU SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(n1cnc2c1ccnc2N)CC3O"                                                                                                                 
4DU InChI            InChI                1.03  "InChI=1S/C11H15N4O6P/c12-11-10-6(1-2-13-11)15(5-14-10)9-3-7(16)8(21-9)4-20-22(17,18)19/h1-2,5,7-9,16H,3-4H2,(H2,12,13)(H2,17,18,19)/t7-,8+,9+/m0/s1" 
4DU InChIKey         InChI                1.03  IOMKKLVSDVQOGL-DJLDLDEBSA-N                                                                                                                           
4DU SMILES_CANONICAL CACTVS               3.370 "Nc1nccc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3"                                                                                              
4DU SMILES           CACTVS               3.370 "Nc1nccc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"                                                                                                  
4DU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cnc(c2c1n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N"                                                                                              
4DU SMILES           "OpenEye OEToolkits" 1.7.6 "c1cnc(c2c1n(cn2)C3CC(C(O3)COP(=O)(O)O)O)N"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4DU "SYSTEMATIC NAME" ACDLabs              12.01 "1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-imidazo[4,5-c]pyridin-4-amine"              
4DU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-(4-azanylimidazo[4,5-c]pyridin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4DU "Create component" 2012-03-28 RCSB 
# 
