data_4NT
#

_chem_comp.id                                   4NT
_chem_comp.name                                 "[(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(3-chloro-4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid"
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C15 H16 Cl N3 O5"
_chem_comp.mon_nstd_parent_comp_id              "THR, TYR, GLY"
_chem_comp.pdbx_synonyms                        "PEPTIDE DERIVED CHROMOPHORE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-04-21
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       353.758
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4NT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4ZF4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4NT  N1   N1   N   0  1  N  N  N  -12.086   6.376  -28.032   1.864   2.515  -1.612  N1   4NT   1  
4NT  CA1  C1   C   0  1  N  N  R  -13.271   6.111  -27.277   2.647   1.564  -0.812  CA1  4NT   2  
4NT  CB1  C2   C   0  1  N  N  R  -12.956   6.367  -25.765   2.897   2.152   0.578  CB1  4NT   3  
4NT  CG1  C3   C   0  1  N  N  N  -11.913   5.374  -25.248   3.560   3.524   0.440  CG1  4NT   4  
4NT  OG1  O1   O   0  1  N  N  N  -12.404   7.660  -25.560   1.653   2.292   1.267  OG1  4NT   5  
4NT  C1   C4   C   0  1  N  N  N  -14.245   7.084  -27.832   1.885   0.271  -0.681  C1   4NT   6  
4NT  N2   N2   N   0  1  N  N  N  -14.455   8.270  -27.311   0.594   0.190  -0.586  N2   4NT   7  
4NT  N3   N3   N   0  1  N  N  N  -15.060   6.810  -28.987   2.464  -0.966  -0.652  N3   4NT   8  
4NT  C2   C5   C   0  1  N  N  N  -15.848   7.989  -29.177   1.487  -1.892  -0.533  C2   4NT   9  
4NT  O2   O2   O   0  1  N  N  N  -16.670   8.144  -30.084   1.617  -3.101  -0.474  O2   4NT  10  
4NT  CA2  C6   C   0  1  N  N  N  -15.416   8.898  -28.085   0.230  -1.124  -0.482  CA2  4NT  11  
4NT  CA3  C7   C   0  1  N  N  N  -15.064   5.588  -29.792   3.900  -1.242  -0.738  CA3  4NT  12  
4NT  C3   C8   C   0  1  N  N  N  -16.048   4.518  -29.654   4.492  -1.258   0.648  C3   4NT  13  
4NT  O3   O3   O   0  1  N  N  N  -16.652   3.998  -30.618   3.787  -1.059   1.608  O3   4NT  14  
4NT  CB2  C9   C   0  1  N  N  N  -15.977  10.164  -27.953  -1.047  -1.627  -0.362  CB2  4NT  15  
4NT  CG2  C10  C   0  1  Y  N  N  -15.634  11.286  -27.145  -2.182  -0.713  -0.210  CG2  4NT  16  
4NT  CD1  C11  C   0  1  Y  N  N  -14.881  11.103  -25.867  -3.465  -1.221   0.036  CD1  4NT  17  
4NT  CD2  C12  C   0  1  Y  N  N  -15.991  12.680  -27.501  -1.988   0.672  -0.304  CD2  4NT  18  
4NT  CE1  C13  C   0  1  Y  N  N  -14.541  12.195  -25.060  -4.528  -0.357   0.179  CE1  4NT  19  
4NT  CE2  C14  C   0  1  Y  N  N  -15.643  13.786  -26.703  -3.057   1.526  -0.160  CE2  4NT  20  
4NT  CZ   C15  C   0  1  Y  N  N  -14.893  13.603  -25.427  -4.329   1.017   0.079  CZ   4NT  21  
4NT  OH   O4   O   0  1  N  N  N  -14.564  14.563  -24.691  -5.380   1.864   0.221  OH   4NT  22  
4NT  CL1  CL1  CL  0  0  N  N  N  -13.660  11.982  -23.565  -6.119  -0.983   0.483  CL1  4NT  23  
4NT  H1   H1   H   0  1  N  N  N  -11.355   5.763  -27.732   1.741   2.179  -2.555  H1   4NT  24  
4NT  H2   H2   H   0  1  N  N  N  -12.269   6.225  -29.003   0.974   2.707  -1.177  H2   4NT  25  
4NT  H4   H4   H   0  1  N  N  N  -13.623   5.078  -27.416   3.601   1.375  -1.304  H4   4NT  26  
4NT  H5   H5   H   0  1  N  N  N  -13.884   6.246  -25.187   3.552   1.487   1.141  H5   4NT  27  
4NT  H6   H6   H   0  1  N  N  N  -11.710   5.575  -24.186   2.906   4.189  -0.123  H6   4NT  28  
4NT  H7   H7   H   0  1  N  N  N  -12.295   4.349  -25.361   3.739   3.943   1.431  H7   4NT  29  
4NT  H8   H8   H   0  1  N  N  N  -10.984   5.484  -25.826   4.509   3.417  -0.085  H8   4NT  30  
4NT  H9   H9   H   0  1  N  N  N  -12.224   7.785  -24.636   1.020   2.871   0.822  H9   4NT  31  
4NT  H10  H10  H   0  1  N  N  N  -14.085   5.116  -29.621   4.056  -2.212  -1.211  H10  4NT  32  
4NT  H11  H11  H   0  1  N  N  N  -15.132   5.921  -30.838   4.385  -0.466  -1.331  H11  4NT  33  
4NT  H13  H13  H   0  1  N  N  N  -16.838  10.328  -28.584  -1.211  -2.694  -0.381  H13  4NT  34  
4NT  H15  H15  H   0  1  N  N  N  -14.593  10.108  -25.560  -3.620  -2.287   0.113  H15  4NT  35  
4NT  H16  H16  H   0  1  N  N  N  -16.542  12.855  -28.413  -1.000   1.069  -0.489  H16  4NT  36  
4NT  H17  H17  H   0  1  N  N  N  -15.923  14.780  -27.019  -2.908   2.593  -0.232  H17  4NT  37  
4NT  O1   O5   O   0  1  N  N  N  -16.432   4.651  -28.056   5.803  -1.493   0.815  O1   4NT  38  
4NT  H3   H3   H   0  1  N  N  N  -14.096  14.235  -23.932  -5.833   2.071  -0.609  H3   4NT  39  
4NT  H12  H12  H   0  1  N  N  N  -17.274   4.241  -27.897   6.137  -1.493   1.723  H12  4NT  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4NT  O3   C3   DOUB  N  N   1  
4NT  O2   C2   DOUB  N  N   2  
4NT  CA3  C3   SING  N  N   3  
4NT  CA3  N3   SING  N  N   4  
4NT  C2   N3   SING  N  N   5  
4NT  C2   CA2  SING  N  N   6  
4NT  N3   C1   SING  N  N   7  
4NT  CA2  CB2  DOUB  N  Z   8  
4NT  CA2  N2   SING  N  N   9  
4NT  N1   CA1  SING  N  N  10  
4NT  CB2  CG2  SING  N  N  11  
4NT  C1   N2   DOUB  N  N  12  
4NT  C1   CA1  SING  N  N  13  
4NT  CD2  CG2  SING  Y  N  14  
4NT  CD2  CE2  DOUB  Y  N  15  
4NT  CA1  CB1  SING  N  N  16  
4NT  CG2  CD1  DOUB  Y  N  17  
4NT  CE2  CZ   SING  Y  N  18  
4NT  CD1  CE1  SING  Y  N  19  
4NT  CB1  OG1  SING  N  N  20  
4NT  CB1  CG1  SING  N  N  21  
4NT  CZ   CE1  DOUB  Y  N  22  
4NT  CZ   OH   SING  N  N  23  
4NT  CE1  CL1  SING  N  N  24  
4NT  N1   H1   SING  N  N  25  
4NT  N1   H2   SING  N  N  26  
4NT  CA1  H4   SING  N  N  27  
4NT  CB1  H5   SING  N  N  28  
4NT  CG1  H6   SING  N  N  29  
4NT  CG1  H7   SING  N  N  30  
4NT  CG1  H8   SING  N  N  31  
4NT  OG1  H9   SING  N  N  32  
4NT  CA3  H10  SING  N  N  33  
4NT  CA3  H11  SING  N  N  34  
4NT  CB2  H13  SING  N  N  35  
4NT  CD1  H15  SING  N  N  36  
4NT  CD2  H16  SING  N  N  37  
4NT  CE2  H17  SING  N  N  38  
4NT  C3   O1   SING  N  N  39  
4NT  OH   H3   SING  N  N  40  
4NT  O1   H12  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4NT  SMILES            ACDLabs               12.01  "NC(C(O)C)C1=N/C(C(N1CC(O)=O)=O)=C\c2cc(Cl)c(cc2)O"  
4NT  InChI             InChI                 1.03   "InChI=1S/C15H16ClN3O5/c1-7(20)13(17)14-18-10(15(24)19(14)6-12(22)23)5-8-2-3-11(21)9(16)4-8/h2-5,7,13,20-21H,6,17H2,1H3,(H,22,23)/b10-5-/t7-,13+/m1/s1"  
4NT  InChIKey          InChI                 1.03   RIVKALVUSNBRTC-QHUHAOFSSA-N  
4NT  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O)[C@H](N)C1=N\C(=C/c2ccc(O)c(Cl)c2)C(=O)N1CC(O)=O"  
4NT  SMILES            CACTVS                3.385  "C[CH](O)[CH](N)C1=NC(=Cc2ccc(O)c(Cl)c2)C(=O)N1CC(O)=O"  
4NT  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C[C@H]([C@@H](C1=N/C(=C\c2ccc(c(c2)Cl)O)/C(=O)N1CC(=O)O)N)O"  
4NT  SMILES            "OpenEye OEToolkits"  1.9.2  "CC(C(C1=NC(=Cc2ccc(c(c2)Cl)O)C(=O)N1CC(=O)O)N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4NT  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(3-chloro-4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid"  
4NT  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "2-[(4Z)-2-[(1R,2R)-1-azanyl-2-oxidanyl-propyl]-4-[(3-chloranyl-4-oxidanyl-phenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4NT  "Create component"  2015-04-21  RCSB  
4NT  "Create component"  2015-04-24  RCSB  
4NT  "Initial release"   2015-06-10  RCSB  
4NT  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     4NT
_pdbx_chem_comp_synonyms.name        "PEPTIDE DERIVED CHROMOPHORE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
