data_4WI
#

_chem_comp.id                                   4WI
_chem_comp.name                                 "(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H34 F3 N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PF-07321332, bound form; nirmatrelvir, bound form; Paxlovid, bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-15
_chem_comp.pdbx_modified_date                   2021-12-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        9I7
_chem_comp.formula_weight                       501.542
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ?
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RFS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4WI  C8   C1   C  0  1  N  N  N   6.572   1.373  18.105   3.870   2.000   0.928  C8   4WI   1  
4WI  C3   C2   C  0  1  N  N  N   7.852  -3.217  19.713   5.102  -1.303  -1.708  C3   4WI   2  
4WI  C1   C3   C  0  1  N  N  N   9.193  -0.664  21.659   2.202  -0.741  -0.548  C1   4WI   3  
4WI  C13  C4   C  0  1  N  N  N  10.255   2.169  22.026  -1.088  -0.017   0.086  C13  4WI   4  
4WI  C21  C5   C  0  1  N  N  N  12.250   4.895  22.778  -4.722   0.366  -0.026  C21  4WI   5  
4WI  C6   C6   C  0  1  N  N  N   5.620   0.469  20.076   5.910   3.171   0.385  C6   4WI   6  
4WI  C7   C7   C  0  1  N  N  N   5.047   1.849  19.806   5.781   2.894   1.899  C7   4WI   7  
4WI  C10  C8   C  0  1  N  N  N  11.164   0.893  24.031  -0.365  -2.281  -0.807  C10  4WI   8  
4WI  C5   C9   C  0  1  N  N  S   6.931   0.492  19.282   4.853   2.207  -0.203  C5   4WI   9  
4WI  C9   C10  C  0  1  N  N  S  10.609  -0.250  21.925   1.182  -1.094   0.504  C9   4WI  10  
4WI  C11  C11  C  0  1  N  N  S  11.688  -0.488  24.080   0.315  -3.349   0.076  C11  4WI  11  
4WI  C12  C12  C  0  1  N  N  R  11.354  -1.196  22.813   1.334  -2.569   0.933  C12  4WI  12  
4WI  C18  C13  C  0  1  N  N  N  12.815  -1.019  23.214   0.096  -3.280   1.589  C18  4WI  13  
4WI  C19  C14  C  0  1  N  N  N  13.636  -0.021  22.474  -1.037  -2.391   2.104  C19  4WI  14  
4WI  C20  C15  C  0  1  N  N  N  13.552  -2.205  23.718   0.362  -4.547   2.405  C20  4WI  15  
4WI  C16  C16  C  0  1  N  N  N   8.922   5.082  24.062  -1.750   1.983  -1.895  C16  4WI  16  
4WI  C17  C17  C  0  1  N  N  N   7.919   2.927  23.533  -3.601   0.538  -2.748  C17  4WI  17  
4WI  C23  C18  C  0  1  N  N  N   8.301   4.608  21.742  -1.239  -0.272  -2.843  C23  4WI  18  
4WI  C4   C19  C  0  1  N  N  N   7.333  -0.901  18.827   5.501   0.879  -0.599  C4   4WI  19  
4WI  C2   C20  C  0  1  N  N  S   7.746  -1.749  20.019   4.443  -0.044  -1.206  C2   4WI  20  
4WI  C14  C21  C  0  1  N  N  S  10.252   3.427  22.860  -2.406  -0.077  -0.642  C14  4WI  21  
4WI  C22  C22  C  0  1  N  N  N  13.138   5.636  21.809  -5.760   1.132   0.751  C22  4WI  22  
4WI  C15  C23  C  0  1  N  N  N   8.851   3.997  23.015  -2.249   0.543  -2.032  C15  4WI  23  
4WI  N5   N1   N  0  1  N  N  N   6.776  -3.940  19.630   4.757  -2.439  -1.231  N5   4WI  24  
4WI  N2   N2   N  0  1  N  N  N   5.414   2.061  18.429   4.414   2.397   2.092  N2   4WI  25  
4WI  N3   N3   N  0  1  N  N  N  10.544   1.003  22.693  -0.192  -1.013  -0.059  N3   4WI  26  
4WI  N1   N4   N  0  1  N  N  N   9.055  -1.335  20.472   3.451  -0.387  -0.183  N1   4WI  27  
4WI  N4   N5   N  0  1  N  N  N  11.163   4.306  22.150  -3.416   0.668   0.114  N4   4WI  28  
4WI  O1   O1   O  0  1  N  N  N   7.211   1.469  17.073   2.753   1.546   0.803  O1   4WI  29  
4WI  O2   O2   O  0  1  N  N  N   8.280  -0.420  22.434   1.900  -0.776  -1.722  O2   4WI  30  
4WI  O3   O3   O  0  1  N  N  N   9.993   2.178  20.830  -0.834   0.928   0.803  O3   4WI  31  
4WI  O4   O4   O  0  1  N  N  N  12.481   4.874  23.983  -5.061  -0.523  -0.779  O4   4WI  32  
4WI  F1   F1   F  0  1  N  N  N  13.131   5.084  20.574  -5.689   2.488   0.414  F1   4WI  33  
4WI  F2   F2   F  0  1  N  N  N  14.445   5.618  22.161  -7.033   0.641   0.440  F2   4WI  34  
4WI  F3   F3   F  0  1  N  N  N  12.800   6.947  21.669  -5.524   0.980   2.122  F3   4WI  35  
4WI  H33  H1   H  0  1  N  N  N   8.821  -3.670  19.562   5.865  -1.246  -2.470  H33  4WI  36  
4WI  H5   H3   H  0  1  N  N  N   4.947  -0.320  19.709   5.663   4.207   0.156  H5   4WI  37  
4WI  H6   H4   H  0  1  N  N  N   5.808   0.320  21.149   6.909   2.922   0.026  H6   4WI  38  
4WI  H7   H5   H  0  1  N  N  N   5.502   2.606  20.462   6.504   2.138   2.207  H7   4WI  39  
4WI  H8   H6   H  0  1  N  N  N   3.955   1.861  19.935   5.934   3.813   2.465  H8   4WI  40  
4WI  H11  H7   H  0  1  N  N  N  11.979   1.623  24.144   0.128  -2.220  -1.777  H11  4WI  41  
4WI  H12  H8   H  0  1  N  N  N  10.416   1.054  24.821  -1.423  -2.509  -0.932  H12  4WI  42  
4WI  H4   H9   H  0  1  N  N  N   7.733   0.950  19.879   4.358   2.662  -1.061  H4   4WI  43  
4WI  H10  H10  H  0  1  N  N  N  11.151  -0.102  20.979   1.280  -0.431   1.364  H10  4WI  44  
4WI  H13  H11  H  0  1  N  N  N  11.501  -1.047  25.009   0.565  -4.303  -0.387  H13  4WI  45  
4WI  H14  H12  H  0  1  N  N  N  10.946  -2.213  22.905   2.339  -2.933   1.145  H14  4WI  46  
4WI  H23  H13  H  0  1  N  N  N  14.658  -0.013  22.880  -1.444  -1.807   1.278  H23  4WI  47  
4WI  H24  H14  H  0  1  N  N  N  13.667  -0.290  21.408  -1.823  -3.014   2.530  H24  4WI  48  
4WI  H25  H15  H  0  1  N  N  N  13.189   0.978  22.588  -0.652  -1.718   2.869  H25  4WI  49  
4WI  H26  H16  H  0  1  N  N  N  12.856  -2.873  24.246   1.032  -4.313   3.232  H26  4WI  50  
4WI  H27  H17  H  0  1  N  N  N  14.005  -2.742  22.872  -0.580  -4.931   2.798  H27  4WI  51  
4WI  H28  H18  H  0  1  N  N  N  14.342  -1.879  24.410   0.823  -5.301   1.766  H28  4WI  52  
4WI  H17  H19  H  0  1  N  N  N   9.319   4.663  24.998  -1.639   2.425  -2.885  H17  4WI  53  
4WI  H19  H20  H  0  1  N  N  N   9.584   5.887  23.711  -2.470   2.563  -1.317  H19  4WI  54  
4WI  H18  H21  H  0  1  N  N  N   7.915   5.486  24.240  -0.787   1.987  -1.385  H18  4WI  55  
4WI  H20  H22  H  0  1  N  N  N   8.333   2.495  24.456  -3.957  -0.488  -2.846  H20  4WI  56  
4WI  H21  H23  H  0  1  N  N  N   6.935   3.370  23.745  -4.321   1.118  -2.171  H21  4WI  57  
4WI  H22  H24  H  0  1  N  N  N   7.810   2.137  22.775  -3.490   0.979  -3.739  H22  4WI  58  
4WI  H29  H25  H  0  1  N  N  N   7.289   4.998  21.929  -1.563  -1.311  -2.887  H29  4WI  59  
4WI  H30  H26  H  0  1  N  N  N   8.956   5.430  21.417  -1.175   0.132  -3.853  H30  4WI  60  
4WI  H31  H27  H  0  1  N  N  N   8.258   3.840  20.956  -0.261  -0.216  -2.366  H31  4WI  61  
4WI  H2   H28  H  0  1  N  N  N   6.480  -1.377  18.321   6.286   1.063  -1.333  H2   4WI  62  
4WI  H3   H29  H  0  1  N  N  N   8.178  -0.824  18.127   5.932   0.407   0.284  H3   4WI  63  
4WI  H32  H30  H  0  1  N  N  N   7.012  -1.605  20.825   3.950   0.463  -2.034  H32  4WI  64  
4WI  H15  H31  H  0  1  N  N  N  10.656   3.198  23.857  -2.720  -1.116  -0.741  H15  4WI  65  
4WI  H36  H32  H  0  1  N  Y  N   6.982  -4.896  19.422   5.182  -3.249  -1.555  H36  4WI  66  
4WI  H9   H35  H  0  1  N  N  N   4.899   2.632  17.789   3.960   2.361   2.948  H9   4WI  67  
4WI  H1   H36  H  0  1  N  N  N   9.862  -1.539  19.918   3.692  -0.359   0.756  H1   4WI  68  
4WI  H16  H37  H  0  1  N  N  N  11.002   4.492  21.181  -3.145   1.379   0.715  H16  4WI  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4WI  O1   C8   DOUB  N  N   1  
4WI  C8   N2   SING  N  N   2  
4WI  C8   C5   SING  N  N   3  
4WI  N2   C7   SING  N  N   4  
4WI  C4   C5   SING  N  N   5  
4WI  C4   C2   SING  N  N   6  
4WI  C5   C6   SING  N  N   7  
4WI  N5   C3   DOUB  N  N   8  
4WI  C3   C2   SING  N  N   9  
4WI  C7   C6   SING  N  N  10  
4WI  C2   N1   SING  N  N  11  
4WI  N1   C1   SING  N  N  12  
4WI  F1   C22  SING  N  N  13  
4WI  O3   C13  DOUB  N  N  14  
4WI  C1   C9   SING  N  N  15  
4WI  C1   O2   DOUB  N  N  16  
4WI  F3   C22  SING  N  N  17  
4WI  C23  C15  SING  N  N  18  
4WI  C22  F2   SING  N  N  19  
4WI  C22  C21  SING  N  N  20  
4WI  C9   N3   SING  N  N  21  
4WI  C9   C12  SING  N  N  22  
4WI  C13  N3   SING  N  N  23  
4WI  C13  C14  SING  N  N  24  
4WI  N4   C21  SING  N  N  25  
4WI  N4   C14  SING  N  N  26  
4WI  C19  C18  SING  N  N  27  
4WI  N3   C10  SING  N  N  28  
4WI  C21  O4   DOUB  N  N  29  
4WI  C12  C18  SING  N  N  30  
4WI  C12  C11  SING  N  N  31  
4WI  C14  C15  SING  N  N  32  
4WI  C15  C17  SING  N  N  33  
4WI  C15  C16  SING  N  N  34  
4WI  C18  C20  SING  N  N  35  
4WI  C18  C11  SING  N  N  36  
4WI  C10  C11  SING  N  N  37  
4WI  C3   H33  SING  N  N  38  
4WI  C6   H5   SING  N  N  39  
4WI  C6   H6   SING  N  N  40  
4WI  C7   H7   SING  N  N  41  
4WI  C7   H8   SING  N  N  42  
4WI  C10  H11  SING  N  N  43  
4WI  C10  H12  SING  N  N  44  
4WI  C5   H4   SING  N  N  45  
4WI  C9   H10  SING  N  N  46  
4WI  C11  H13  SING  N  N  47  
4WI  C12  H14  SING  N  N  48  
4WI  C19  H23  SING  N  N  49  
4WI  C19  H24  SING  N  N  50  
4WI  C19  H25  SING  N  N  51  
4WI  C20  H26  SING  N  N  52  
4WI  C20  H27  SING  N  N  53  
4WI  C20  H28  SING  N  N  54  
4WI  C16  H17  SING  N  N  55  
4WI  C16  H19  SING  N  N  56  
4WI  C16  H18  SING  N  N  57  
4WI  C17  H20  SING  N  N  58  
4WI  C17  H21  SING  N  N  59  
4WI  C17  H22  SING  N  N  60  
4WI  C23  H29  SING  N  N  61  
4WI  C23  H30  SING  N  N  62  
4WI  C23  H31  SING  N  N  63  
4WI  C4   H2   SING  N  N  64  
4WI  C4   H3   SING  N  N  65  
4WI  C2   H32  SING  N  N  66  
4WI  C14  H15  SING  N  N  67  
4WI  N5   H36  SING  N  N  68  
4WI  N2   H9   SING  N  N  69  
4WI  N1   H1   SING  N  N  70  
4WI  N4   H16  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4WI  SMILES            ACDLabs               12.01  "CC1(C)C2C(C(=O)NC(C=N)CC3CCNC3=O)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C"  
4WI  InChI             InChI                 1.03   "InChI=1S/C23H34F3N5O4/c1-21(2,3)16(30-20(35)23(24,25)26)19(34)31-10-13-14(22(13,4)5)15(31)18(33)29-12(9-27)8-11-6-7-28-17(11)32/h9,11-16,27H,6-8,10H2,1-5H3,(H,28,32)(H,29,33)(H,30,35)/b27-9+/t11-,12-,13-,14-,15-,16+/m0/s1"  
4WI  InChIKey          InChI                 1.03   WDVIRQQKRMIXGS-XIFHJVQQSA-N  
4WI  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N)C2(C)C"  
4WI  SMILES            CACTVS                3.385  "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)C=N)C2(C)C"  
4WI  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@@H](C3(C)C)CN2C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F"  
4WI  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCNC3=O)C=N)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4WI  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide"  
4WI  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},2~{S},5~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4WI  "Create component"    2021-07-15  RCSB  
4WI  "Initial release"     2021-11-10  RCSB  
4WI  "Other modification"  2021-12-14  RCSB  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  4WI  "PF-07321332, bound form"   PDB  ?  
2  4WI  "nirmatrelvir, bound form"  PDB  "drug name"  
3  4WI  "Paxlovid, bound form"      PDB  "drug brand name"  
##
