data_4YG
#

_chem_comp.id                                   4YG
_chem_comp.name                                 "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-[N-(methanesulfonyl)-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H39 N5 O6 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-15
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       605.769
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4YG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RFU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4YG  C22  C1   C  0  1  Y  N  N   7.838  -5.295  25.748   8.767   0.766   0.368  C22  4YG   1  
4YG  C23  C2   C  0  1  Y  N  N   9.107  -5.816  25.514   8.740   0.595  -1.009  C23  4YG   2  
4YG  C21  C3   C  0  1  Y  N  N   7.141  -4.619  24.735   7.717   0.371   1.140  C21  4YG   3  
4YG  C24  C4   C  0  1  Y  N  N   9.705  -5.674  24.258   7.640   0.027  -1.612  C24  4YG   4  
4YG  C20  C5   C  0  1  Y  N  N   7.720  -4.466  23.451   6.578  -0.214   0.551  C20  4YG   5  
4YG  C25  C6   C  0  1  Y  N  N   8.998  -4.998  23.247   6.554  -0.378  -0.838  C25  4YG   6  
4YG  C19  C7   C  0  1  Y  N  N   7.980  -3.852  21.317   4.547  -1.163   0.367  C19  4YG   7  
4YG  C17  C8   C  0  1  N  N  N   6.295   1.228  18.054   3.077   1.801  -0.738  C17  4YG   8  
4YG  C11  C9   C  0  1  N  N  N   8.997  -0.462  21.722  -0.296  -0.975   0.125  C11  4YG   9  
4YG  C6   C10  C  0  1  N  N  N  10.255   2.295  22.309  -3.485   0.241   0.516  C6   4YG  10  
4YG  C15  C11  C  0  1  N  N  N   5.784   0.870  20.337   3.564   2.710   1.444  C15  4YG  11  
4YG  C16  C12  C  0  1  N  N  N   5.269   2.220  19.885   2.708   3.671   0.589  C16  4YG  12  
4YG  C7   C13  C  0  1  N  N  N  11.063   0.688  24.128  -2.836  -1.199  -1.474  C7   4YG  13  
4YG  C14  C14  C  0  1  N  N  S   6.831   0.516  19.278   3.404   1.377   0.677  C14  4YG  14  
4YG  C10  C15  C  0  1  N  N  S  10.442  -0.134  21.925  -1.643  -1.522   0.524  C10  4YG  15  
4YG  C8   C16  C  0  1  N  N  S  11.550  -0.715  23.991  -2.633  -2.726  -1.372  C8   4YG  16  
4YG  C9   C17  C  0  1  N  N  R  11.172  -1.226  22.643  -1.845  -2.936  -0.062  C9   4YG  17  
4YG  C26  C18  C  0  1  N  N  N  12.636  -1.221  23.054  -3.314  -3.468  -0.221  C26  4YG  18  
4YG  C27  C19  C  0  1  N  N  N  13.560  -0.224  22.449  -4.417  -2.734   0.545  C27  4YG  19  
4YG  C28  C20  C  0  1  N  N  N  13.245  -2.529  23.389  -3.505  -4.980  -0.363  C28  4YG  20  
4YG  C1   C21  C  0  1  N  N  N   8.720   4.994  24.422  -3.630   3.133   0.324  C1   4YG  21  
4YG  C3   C22  C  0  1  N  N  N   7.733   3.713  22.611  -2.961   1.978  -1.788  C3   4YG  22  
4YG  C5   C23  C  0  1  N  N  N  12.898   4.625  20.951  -7.472  -0.725  -0.338  C5   4YG  23  
4YG  C13  C24  C  0  1  N  N  N   6.926  -0.976  19.008   2.257   0.554   1.267  C13  4YG  24  
4YG  C18  C25  C  0  1  N  N  S   7.698  -3.230  19.982   3.231  -1.710   0.857  C18  4YG  25  
4YG  C4   C26  C  0  1  N  N  S  10.186   3.452  23.269  -4.605   0.904  -0.243  C4   4YG  26  
4YG  C2   C27  C  0  1  N  N  N   8.754   3.668  23.726  -4.114   2.235  -0.816  C2   4YG  27  
4YG  C12  C28  C  0  1  N  N  S   7.493  -1.731  20.205   2.105  -0.747   0.477  C12  4YG  28  
4YG  N5   N1   N  0  1  Y  N  N   7.161  -3.821  22.352   5.448  -0.667   1.127  N5   4YG  29  
4YG  N4   N2   N  0  1  N  N  N   5.252   2.054  18.463   2.696   3.090  -0.759  N4   4YG  30  
4YG  N2   N3   N  0  1  N  N  N  10.437   1.024  22.834  -2.739  -0.712  -0.078  N2   4YG  31  
4YG  N3   N4   N  0  1  N  N  N   8.788  -1.201  20.578   0.811  -1.360   0.790  N3   4YG  32  
4YG  N1   N5   N  0  1  N  N  N  10.695   4.624  22.500  -5.731   1.147   0.661  N1   4YG  33  
4YG  O5   O1   O  0  1  N  N  N   6.747   1.114  16.929   3.153   1.084  -1.713  O5   4YG  34  
4YG  O4   O2   O  0  1  N  N  N   8.145  -0.094  22.518  -0.208  -0.190  -0.795  O4   4YG  35  
4YG  O3   O3   O  0  1  N  N  N  10.110   2.506  21.115  -3.255   0.564   1.663  O3   4YG  36  
4YG  O1   O4   O  0  1  N  N  N  13.075   4.139  23.475  -7.300   1.836  -1.067  O1   4YG  37  
4YG  O2   O5   O  0  1  N  N  N  12.535   6.484  22.696  -8.090   1.347   1.226  O2   4YG  38  
4YG  O6   O6   O  0  1  N  N  N   6.517  -3.823  19.441   3.275  -1.855   2.278  O6   4YG  39  
4YG  S2   S1   S  0  1  Y  N  N   9.461  -4.682  21.619   5.021  -1.127  -1.272  S2   4YG  40  
4YG  S1   S2   S  0  1  N  N  N  12.371   5.047  22.586  -7.285   1.025   0.100  S1   4YG  41  
4YG  H29  H1   H  0  1  N  N  N   7.384  -5.412  26.721   9.633   1.213   0.834  H29  4YG  42  
4YG  H30  H2   H  0  1  N  N  N   9.632  -6.332  26.305   9.581   0.909  -1.608  H30  4YG  43  
4YG  H28  H3   H  0  1  N  N  N   6.160  -4.214  24.935   7.757   0.508   2.211  H28  4YG  44  
4YG  H31  H4   H  0  1  N  N  N  10.690  -6.075  24.068   7.620  -0.105  -2.684  H31  4YG  45  
4YG  H23  H5   H  0  1  N  N  N   4.974   0.126  20.354   4.606   3.027   1.462  H23  4YG  46  
4YG  H24  H6   H  0  1  N  N  N   6.241   0.937  21.335   3.165   2.629   2.456  H24  4YG  47  
4YG  H25  H7   H  0  1  N  N  N   5.948   3.031  20.187   1.694   3.727   0.985  H25  4YG  48  
4YG  H26  H8   H  0  1  N  N  N   4.261   2.419  20.279   3.160   4.663   0.570  H26  4YG  49  
4YG  H13  H9   H  0  1  N  N  N  11.903   1.367  24.335  -2.055  -0.751  -2.088  H13  4YG  50  
4YG  H14  H10  H  0  1  N  N  N  10.325   0.760  24.941  -3.819  -0.973  -1.887  H14  4YG  51  
4YG  H22  H11  H  0  1  N  N  N   7.814   0.920  19.561   4.334   0.810   0.700  H22  4YG  52  
4YG  H17  H12  H  0  1  N  N  N  10.931   0.107  20.970  -1.737  -1.543   1.609  H17  4YG  53  
4YG  H15  H13  H  0  1  N  N  N  11.316  -1.382  24.834  -2.383  -3.264  -2.286  H15  4YG  54  
4YG  H16  H14  H  0  1  N  N  N  10.693  -2.216  22.622  -1.022  -3.645   0.033  H16  4YG  55  
4YG  H32  H15  H  0  1  N  N  N  14.571  -0.365  22.858  -4.451  -1.694   0.224  H32  4YG  56  
4YG  H33  H16  H  0  1  N  N  N  13.584  -0.361  21.358  -5.377  -3.209   0.343  H33  4YG  57  
4YG  H34  H17  H  0  1  N  N  N  13.208   0.791  22.683  -4.208  -2.778   1.614  H34  4YG  58  
4YG  H35  H18  H  0  1  N  N  N  12.481  -3.188  23.827  -3.110  -5.481   0.521  H35  4YG  59  
4YG  H36  H19  H  0  1  N  N  N  13.647  -2.991  22.475  -4.567  -5.204  -0.464  H36  4YG  60  
4YG  H37  H20  H  0  1  N  N  N  14.059  -2.379  24.113  -2.974  -5.331  -1.248  H37  4YG  61  
4YG  H3   H21  H  0  1  N  N  N   9.453   4.997  25.242  -3.280   4.081  -0.084  H3   4YG  62  
4YG  H1   H22  H  0  1  N  N  N   8.968   5.791  23.705  -4.451   3.316   1.016  H1   4YG  63  
4YG  H2   H23  H  0  1  N  N  N   7.713   5.168  24.830  -2.812   2.641   0.851  H2   4YG  64  
4YG  H6   H24  H  0  1  N  N  N   6.731   3.872  23.037  -2.133   1.510  -1.255  H6   4YG  65  
4YG  H5   H25  H  0  1  N  N  N   7.975   4.538  21.925  -3.299   1.316  -2.586  H5   4YG  66  
4YG  H7   H26  H  0  1  N  N  N   7.750   2.761  22.060  -2.629   2.924  -2.217  H7   4YG  67  
4YG  H12  H27  H  0  1  N  N  N  13.971   4.842  20.844  -7.310  -1.340   0.547  H12  4YG  68  
4YG  H11  H28  H  0  1  N  N  N  12.721   3.554  20.774  -8.478  -0.898  -0.721  H11  4YG  69  
4YG  H10  H29  H  0  1  N  N  N  12.330   5.217  20.218  -6.741  -0.989  -1.102  H10  4YG  70  
4YG  H21  H30  H  0  1  N  N  N   5.920  -1.363  18.786   2.476   0.322   2.309  H21  4YG  71  
4YG  H20  H31  H  0  1  N  N  N   7.582  -1.140  18.140   1.331   1.126   1.208  H20  4YG  72  
4YG  H38  H32  H  0  1  N  N  N   8.556  -3.385  19.311   3.048  -2.682   0.399  H38  4YG  73  
4YG  H8   H33  H  0  1  N  N  N  10.831   3.259  24.139  -4.926   0.254  -1.057  H8   4YG  74  
4YG  H4   H34  H  0  1  N  N  N   8.479   2.875  24.437  -4.931   2.727  -1.344  H4   4YG  75  
4YG  H19  H35  H  0  1  N  N  N   6.798  -1.605  21.048   2.155  -0.532  -0.591  H19  4YG  76  
4YG  H27  H36  H  0  1  N  N  N   4.583   2.473  17.849   2.446   3.574  -1.561  H27  4YG  77  
4YG  H18  H37  H  0  1  N  N  N   9.567  -1.380  19.977   0.752  -2.043   1.477  H18  4YG  78  
4YG  H9   H38  H  0  1  N  N  N  10.179   5.421  22.812  -5.568   1.379   1.589  H9   4YG  79  
4YG  H39  H39  H  0  1  N  N  N   6.661  -4.753  19.309   3.434  -1.027   2.753  H39  4YG  80  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4YG  O5   C17  DOUB  N  N   1  
4YG  C17  N4   SING  N  N   2  
4YG  C17  C14  SING  N  N   3  
4YG  N4   C16  SING  N  N   4  
4YG  C13  C14  SING  N  N   5  
4YG  C13  C12  SING  N  N   6  
4YG  C14  C15  SING  N  N   7  
4YG  O6   C18  SING  N  N   8  
4YG  C16  C15  SING  N  N   9  
4YG  C18  C12  SING  N  N  10  
4YG  C18  C19  SING  N  N  11  
4YG  C12  N3   SING  N  N  12  
4YG  N3   C11  SING  N  N  13  
4YG  C5   S1   SING  N  N  14  
4YG  O3   C6   DOUB  N  N  15  
4YG  C19  S2   SING  Y  N  16  
4YG  C19  N5   DOUB  Y  N  17  
4YG  S2   C25  SING  Y  N  18  
4YG  C11  C10  SING  N  N  19  
4YG  C11  O4   DOUB  N  N  20  
4YG  C10  C9   SING  N  N  21  
4YG  C10  N2   SING  N  N  22  
4YG  C6   N2   SING  N  N  23  
4YG  C6   C4   SING  N  N  24  
4YG  N5   C20  SING  Y  N  25  
4YG  C27  C26  SING  N  N  26  
4YG  N1   S1   SING  N  N  27  
4YG  N1   C4   SING  N  N  28  
4YG  S1   O2   DOUB  N  N  29  
4YG  S1   O1   DOUB  N  N  30  
4YG  C3   C2   SING  N  N  31  
4YG  C9   C26  SING  N  N  32  
4YG  C9   C8   SING  N  N  33  
4YG  N2   C7   SING  N  N  34  
4YG  C26  C28  SING  N  N  35  
4YG  C26  C8   SING  N  N  36  
4YG  C25  C20  DOUB  Y  N  37  
4YG  C25  C24  SING  Y  N  38  
4YG  C4   C2   SING  N  N  39  
4YG  C20  C21  SING  Y  N  40  
4YG  C2   C1   SING  N  N  41  
4YG  C8   C7   SING  N  N  42  
4YG  C24  C23  DOUB  Y  N  43  
4YG  C21  C22  DOUB  Y  N  44  
4YG  C23  C22  SING  Y  N  45  
4YG  C22  H29  SING  N  N  46  
4YG  C23  H30  SING  N  N  47  
4YG  C21  H28  SING  N  N  48  
4YG  C24  H31  SING  N  N  49  
4YG  C15  H23  SING  N  N  50  
4YG  C15  H24  SING  N  N  51  
4YG  C16  H25  SING  N  N  52  
4YG  C16  H26  SING  N  N  53  
4YG  C7   H13  SING  N  N  54  
4YG  C7   H14  SING  N  N  55  
4YG  C14  H22  SING  N  N  56  
4YG  C10  H17  SING  N  N  57  
4YG  C8   H15  SING  N  N  58  
4YG  C9   H16  SING  N  N  59  
4YG  C27  H32  SING  N  N  60  
4YG  C27  H33  SING  N  N  61  
4YG  C27  H34  SING  N  N  62  
4YG  C28  H35  SING  N  N  63  
4YG  C28  H36  SING  N  N  64  
4YG  C28  H37  SING  N  N  65  
4YG  C1   H3   SING  N  N  66  
4YG  C1   H1   SING  N  N  67  
4YG  C1   H2   SING  N  N  68  
4YG  C3   H6   SING  N  N  69  
4YG  C3   H5   SING  N  N  70  
4YG  C3   H7   SING  N  N  71  
4YG  C5   H12  SING  N  N  72  
4YG  C5   H11  SING  N  N  73  
4YG  C5   H10  SING  N  N  74  
4YG  C13  H21  SING  N  N  75  
4YG  C13  H20  SING  N  N  76  
4YG  C18  H38  SING  N  N  77  
4YG  C4   H8   SING  N  N  78  
4YG  C2   H4   SING  N  N  79  
4YG  C12  H19  SING  N  N  80  
4YG  N4   H27  SING  N  N  81  
4YG  N3   H18  SING  N  N  82  
4YG  N1   H9   SING  N  N  83  
4YG  O6   H39  SING  N  N  84  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4YG  SMILES            ACDLabs               12.01  "CC(C)C(NS(C)(=O)=O)C(=O)N1CC2C(C1C(=O)NC(CC1CCNC1=O)C(O)c1nc3ccccc3s1)C2(C)C"  
4YG  InChI             InChI                 1.03   "InChI=1S/C28H39N5O6S2/c1-14(2)21(32-41(5,38)39)27(37)33-13-16-20(28(16,3)4)22(33)25(36)30-18(12-15-10-11-29-24(15)35)23(34)26-31-17-8-6-7-9-19(17)40-26/h6-9,14-16,18,20-23,32,34H,10-13H2,1-5H3,(H,29,35)(H,30,36)/t15-,16-,18-,20-,21-,22-,23-/m0/s1"  
4YG  InChIKey          InChI                 1.03   FSCAOQMZHZLHRY-DECHFVIOSA-N  
4YG  SMILES_CANONICAL  CACTVS                3.385  "CC(C)[C@H](N[S](C)(=O)=O)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)c4sc5ccccc5n4)C2(C)C"  
4YG  SMILES            CACTVS                3.385  "CC(C)[CH](N[S](C)(=O)=O)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)c4sc5ccccc5n4)C2(C)C"  
4YG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)[C@@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](c4nc5ccccc5s4)O)C2(C)C)NS(=O)(=O)C"  
4YG  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)C(C(=O)N1CC2C(C1C(=O)NC(CC3CCNC3=O)C(c4nc5ccccc5s4)O)C2(C)C)NS(=O)(=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4YG  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-[N-(methanesulfonyl)-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"  
4YG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},2~{S},5~{S})-~{N}-[(1~{S},2~{S})-1-(1,3-benzothiazol-2-yl)-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-6,6-dimethyl-3-[(2~{S})-3-methyl-2-(methylsulfonylamino)butanoyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4YG  "Create component"  2021-07-15  RCSB  
4YG  "Initial release"   2021-11-10  RCSB  
##
