data_58A
#

_chem_comp.id                                   58A
_chem_comp.name                                 "5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C48 H85 N3 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "cytidinediphosphate-dioleoylglycerol; CDP-1,2-dioleoyl-sn-glycerol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-19
_chem_comp.pdbx_modified_date                   2020-07-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       1006.147
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    58A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5D92
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
58A  OAA    O1   O  0  1  N  N  N    0.999  -19.094  -60.222   -6.012   4.937   0.103  OAA    58A    1  
58A  CAB    C1   C  0  1  N  N  N   -0.113  -18.862  -59.886   -6.484   4.286  -0.815  CAB    58A    2  
58A  NAC    N1   N  0  1  N  N  N   -0.912  -19.886  -59.638   -7.778   3.970  -0.797  NAC    58A    3  
58A  CAD    C2   C  0  1  N  N  N   -2.165  -19.691  -59.264   -8.316   3.263  -1.781  CAD    58A    4  
58A  NAE    N2   N  0  1  N  N  N   -3.041  -20.813  -58.991   -9.654   2.943  -1.752  NAE    58A    5  
58A  CAF    C3   C  0  1  N  N  N   -2.616  -18.381  -59.140   -7.510   2.840  -2.858  CAF    58A    6  
58A  CAG    C4   C  0  1  N  N  N   -1.745  -17.332  -59.411   -6.196   3.169  -2.862  CAG    58A    7  
58A  NAH    N3   N  0  1  N  N  N   -0.502  -17.601  -59.785   -5.690   3.902  -1.831  NAH    58A    8  
58A  "C1'"  C5   C  0  1  N  N  R    0.403  -16.546  -60.059   -4.272   4.270  -1.826  "C1'"  58A    9  
58A  "O4'"  O2   O  0  1  N  N  N   -0.190  -15.108  -59.509   -3.649   3.856  -0.590  "O4'"  58A   10  
58A  "C2'"  C6   C  0  1  N  N  R    0.596  -16.380  -61.370   -4.114   5.806  -1.852  "C2'"  58A   11  
58A  "O2'"  O3   O  0  1  N  N  N    1.879  -17.014  -61.768   -3.858   6.261  -3.182  "O2'"  58A   12  
58A  "C3'"  C7   C  0  1  N  N  S    0.677  -14.845  -61.592   -2.896   6.075  -0.941  "C3'"  58A   13  
58A  "O3'"  O4   O  0  1  N  N  N    1.856  -14.512  -62.114   -1.847   6.703  -1.680  "O3'"  58A   14  
58A  "C4'"  C8   C  0  1  N  N  R    0.524  -14.222  -60.142   -2.461   4.668  -0.472  "C4'"  58A   15  
58A  "C5'"  C9   C  0  1  N  N  N   -0.207  -12.867  -60.199   -1.989   4.714   0.983  "C5'"  58A   16  
58A  "O5'"  O5   O  0  1  N  N  N   -1.526  -13.059  -59.723   -1.483   3.432   1.360  "O5'"  58A   17  
58A  PAR    P1   P  0  1  N  N  N   -2.095  -12.045  -58.534   -0.900   3.116   2.827  PAR    58A   18  
58A  OAT    O6   O  0  1  N  N  N   -3.133  -12.790  -57.715    0.172   4.083   3.150  OAT    58A   19  
58A  OAS    O7   O  0  1  N  N  N   -0.957  -11.579  -57.655   -2.082   3.243   3.913  OAS    58A   20  
58A  OAU    O8   O  0  1  N  N  N   -2.802  -10.729  -59.244   -0.302   1.621   2.857  OAU    58A   21  
58A  PAV    P2   P  0  1  N  N  N   -4.442  -10.677  -59.389    0.664   0.823   3.868  PAV    58A   22  
58A  OAX    O9   O  0  1  N  N  N   -4.843  -10.337  -60.805    1.742   1.723   4.333  OAX    58A   23  
58A  OAW    O10  O  0  1  N  N  N   -4.934  -12.063  -59.048   -0.190   0.309   5.132  OAW    58A   24  
58A  OAY    O11  O  0  1  N  N  N   -5.059   -9.551  -58.320    1.310  -0.440   3.107  OAY    58A   25  
58A  CAZ    C10  C  0  1  N  N  N   -5.564   -8.341  -58.848    2.293  -1.289   3.704  CAZ    58A   26  
58A  CBA    C11  C  0  1  N  N  R   -6.322   -7.554  -57.765    2.689  -2.385   2.714  CBA    58A   27  
58A  OBB    O12  O  0  1  N  N  N   -5.510   -7.323  -56.650    3.345  -1.786   1.565  OBB    58A   28  
58A  CBU    C12  C  0  1  N  N  N   -5.790   -6.094  -55.994    4.678  -1.645   1.629  CBU    58A   29  
58A  OCK    O13  O  0  1  N  N  N   -5.677   -5.065  -56.587    5.278  -2.011   2.613  OCK    58A   30  
58A  CBV    C13  C  0  1  N  N  N   -6.252   -6.084  -54.505    5.428  -1.031   0.475  CBV    58A   31  
58A  CBW    C14  C  0  1  N  N  N   -7.163   -4.856  -54.157    6.922  -0.988   0.802  CBW    58A   32  
58A  CBX    C15  C  0  1  N  N  N   -7.394   -4.699  -52.612    7.683  -0.365  -0.370  CBX    58A   33  
58A  CBY    C16  C  0  1  N  N  N   -8.885   -4.861  -52.195    9.177  -0.322  -0.043  CBY    58A   34  
58A  CBZ    C17  C  0  1  N  N  N   -9.045   -4.969  -50.647    9.938   0.301  -1.215  CBZ    58A   35  
58A  CCA    C18  C  0  1  N  N  N  -10.164   -4.048  -50.070   11.432   0.344  -0.888  CCA    58A   36  
58A  CCB    C19  C  0  1  N  N  N  -10.453   -4.362  -48.572   12.193   0.967  -2.060  CCB    58A   37  
58A  CCC    C20  C  0  1  N  N  N  -11.567   -3.457  -47.963   13.664   1.010  -1.737  CCC    58A   38  
58A  CCD    C21  C  0  1  N  N  N  -12.411   -4.205  -46.889   14.530   0.461  -2.553  CCD    58A   39  
58A  CCE    C22  C  0  1  N  N  N  -13.943   -4.065  -47.127   16.001   0.503  -2.231  CCE    58A   40  
58A  CCF    C23  C  0  1  N  N  N  -14.770   -4.987  -46.188   16.565  -0.919  -2.236  CCF    58A   41  
58A  CCG    C24  C  0  1  N  N  N  -16.174   -4.404  -45.868   18.059  -0.876  -1.909  CCG    58A   42  
58A  CCH    C25  C  0  1  N  N  N  -16.800   -5.033  -44.590   18.624  -2.298  -1.913  CCH    58A   43  
58A  CCI    C26  C  0  1  N  N  N  -17.689   -4.032  -43.809   20.118  -2.255  -1.586  CCI    58A   44  
58A  CCJ    C27  C  0  1  N  N  N  -18.864   -4.729  -43.092   20.682  -3.677  -1.590  CCJ    58A   45  
58A  CBC    C28  C  0  1  N  N  N   -7.595   -8.317  -57.324    1.437  -3.133   2.253  CBC    58A   46  
58A  OBD    O14  O  0  1  N  N  N   -8.469   -7.374  -56.732    0.478  -2.186   1.714  OBD    58A   47  
58A  CBE    C29  C  0  1  N  N  N   -9.524   -7.935  -55.953   -0.684  -2.684   1.263  CBE    58A   48  
58A  OCL    O15  O  0  1  N  N  N   -9.845   -9.070  -56.107   -0.892  -3.873   1.316  OCL    58A   49  
58A  CBF    C30  C  0  1  N  N  N  -10.243   -7.058  -54.907   -1.728  -1.761   0.689  CBF    58A   50  
58A  CBG    C31  C  0  1  N  N  N  -11.749   -7.388  -54.764   -2.946  -2.578   0.252  CBG    58A   51  
58A  CBH    C32  C  0  1  N  N  N  -12.546   -6.234  -54.066   -4.006  -1.641  -0.330  CBH    58A   52  
58A  CBI    C33  C  0  1  N  N  N  -13.399   -6.742  -52.843   -5.224  -2.457  -0.767  CBI    58A   53  
58A  CBJ    C34  C  0  1  N  N  N  -13.875   -5.583  -51.891   -6.284  -1.520  -1.349  CBJ    58A   54  
58A  CBK    C35  C  0  1  N  N  N  -15.431   -5.401  -51.917   -7.502  -2.336  -1.787  CBK    58A   55  
58A  CBL    C36  C  0  1  N  N  N  -16.005   -4.953  -50.552   -8.562  -1.399  -2.369  CBL    58A   56  
58A  CBM    C37  C  0  1  N  N  N  -17.509   -5.302  -50.410   -9.761  -2.203  -2.799  CBM    58A   57  
58A  CBN    C38  C  0  1  N  N  N  -18.005   -5.228  -48.944  -10.950  -1.904  -2.338  CBN    58A   58  
58A  CBO    C39  C  0  1  N  N  N  -19.538   -5.493  -48.831  -12.150  -2.708  -2.769  CBO    58A   59  
58A  CBP    C40  C  0  1  N  N  N  -20.068   -5.383  -47.360  -12.876  -3.243  -1.533  CBP    58A   60  
58A  CBQ    C41  C  0  1  N  N  N  -21.546   -4.877  -47.305  -14.094  -4.060  -1.970  CBQ    58A   61  
58A  CBR    C42  C  0  1  N  N  N  -21.692   -3.554  -46.505  -14.819  -4.595  -0.734  CBR    58A   62  
58A  CBS    C43  C  0  1  N  N  N  -22.897   -3.584  -45.545  -16.037  -5.411  -1.171  CBS    58A   63  
58A  CBT    C44  C  0  1  N  N  N  -22.488   -3.459  -44.072  -16.763  -5.946   0.065  CBT    58A   64  
58A  H1     H1   H  0  1  N  N  N   -2.700  -21.748  -59.085  -10.206   3.235  -1.010  H1     58A   65  
58A  H2     H2   H  0  1  N  N  N   -3.987  -20.652  -58.709  -10.045   2.425  -2.473  H2     58A   66  
58A  H3     H3   H  0  1  N  N  N   -3.633  -18.181  -58.836   -7.933   2.263  -3.667  H3     58A   67  
58A  H4     H4   H  0  1  N  N  N   -2.077  -16.309  -59.318   -5.558   2.857  -3.675  H4     58A   68  
58A  H5     H5   H  0  1  N  N  N    1.354  -16.723  -59.536   -3.761   3.820  -2.677  H5     58A   69  
58A  H6     H6   H  0  1  N  N  N   -0.230  -16.789  -61.971   -5.005   6.288  -1.450  H6     58A   70  
58A  H7     H7   H  0  1  N  N  N    1.945  -17.874  -61.370   -3.751   7.219  -3.257  H7     58A   71  
58A  H8     H8   H  0  1  N  N  N   -0.171  -14.520  -62.213   -3.184   6.689  -0.088  H8     58A   72  
58A  H9     H9   H  0  1  N  N  N    1.891  -13.572  -62.244   -2.086   7.564  -2.049  H9     58A   73  
58A  H10    H10  H  0  1  N  N  N    1.525  -14.081  -59.708   -1.671   4.281  -1.116  H10    58A   74  
58A  H11    H11  H  0  1  N  N  N    0.315  -12.135  -59.566   -1.201   5.460   1.086  H11    58A   75  
58A  H12    H12  H  0  1  N  N  N   -0.234  -12.501  -61.236   -2.827   4.978   1.628  H12    58A   76  
58A  H13    H13  H  0  1  N  N  N   -1.119  -11.847  -56.758   -2.821   2.637   3.763  H13    58A   77  
58A  H14    H14  H  0  1  N  N  N   -4.296  -12.499  -58.496   -0.916  -0.286   4.901  H14    58A   78  
58A  H15    H15  H  0  1  N  N  N   -4.727   -7.731  -59.219    3.172  -0.699   3.964  H15    58A   79  
58A  H16    H16  H  0  1  N  N  N   -6.250   -8.567  -59.678    1.881  -1.744   4.605  H16    58A   80  
58A  H17    H17  H  0  1  N  N  N   -6.638   -6.595  -58.201    3.372  -3.083   3.198  H17    58A   81  
58A  H18    H18  H  0  1  N  N  N   -6.816   -7.007  -54.306    5.269  -1.631  -0.421  H18    58A   82  
58A  H19    H19  H  0  1  N  N  N   -5.361   -6.053  -53.861    5.064  -0.018   0.303  H19    58A   83  
58A  H20    H20  H  0  1  N  N  N   -6.683   -3.942  -54.537    7.081  -0.389   1.698  H20    58A   84  
58A  H21    H21  H  0  1  N  N  N   -8.138   -4.990  -54.648    7.286  -2.001   0.974  H21    58A   85  
58A  H22    H22  H  0  1  N  N  N   -6.800   -5.464  -52.090    7.524  -0.965  -1.266  H22    58A   86  
58A  H23    H23  H  0  1  N  N  N   -7.053   -3.699  -52.307    7.319   0.648  -0.542  H23    58A   87  
58A  H24    H24  H  0  1  N  N  N   -9.451   -3.988  -52.551    9.335   0.278   0.854  H24    58A   88  
58A  H25    H25  H  0  1  N  N  N   -9.287   -5.774  -52.659    9.541  -1.335   0.129  H25    58A   89  
58A  H26    H26  H  0  1  N  N  N   -9.288   -6.012  -50.394    9.779  -0.299  -2.111  H26    58A   90  
58A  H27    H27  H  0  1  N  N  N   -8.089   -4.691  -50.178    9.574   1.314  -1.387  H27    58A   91  
58A  H28    H28  H  0  1  N  N  N   -9.844   -2.999  -50.159   11.590   0.944   0.009  H28    58A   92  
58A  H29    H29  H  0  1  N  N  N  -11.086   -4.201  -50.650   11.795  -0.669  -0.716  H29    58A   93  
58A  H30    H30  H  0  1  N  N  N  -10.770   -5.412  -48.489   12.034   0.367  -2.956  H30    58A   94  
58A  H31    H31  H  0  1  N  N  N   -9.527   -4.212  -47.998   11.829   1.980  -2.231  H31    58A   95  
58A  H32    H32  H  0  1  N  N  N  -11.734   -2.430  -48.253   14.006   1.493  -0.834  H32    58A   96  
58A  H34    H34  H  0  1  N  N  N  -11.980   -4.760  -46.069   14.188  -0.022  -3.457  H34    58A   97  
58A  H36    H36  H  0  1  N  N  N  -14.236   -3.020  -46.945   16.520   1.102  -2.980  H36    58A   98  
58A  H37    H37  H  0  1  N  N  N  -14.165   -4.332  -48.171   16.145   0.948  -1.247  H37    58A   99  
58A  H38    H38  H  0  1  N  N  N  -14.897   -5.965  -46.676   16.047  -1.518  -1.487  H38    58A  100  
58A  H39    H39  H  0  1  N  N  N  -14.218   -5.116  -45.245   16.422  -1.364  -3.220  H39    58A  101  
58A  H40    H40  H  0  1  N  N  N  -16.080   -3.318  -45.718   18.578  -0.277  -2.657  H40    58A  102  
58A  H41    H41  H  0  1  N  N  N  -16.841   -4.600  -46.721   18.203  -0.431  -0.924  H41    58A  103  
58A  H42    H42  H  0  1  N  N  N  -17.416   -5.895  -44.887   18.105  -2.897  -1.165  H42    58A  104  
58A  H43    H43  H  0  1  N  N  N  -15.988   -5.373  -43.930   18.480  -2.743  -2.898  H43    58A  105  
58A  H44    H44  H  0  1  N  N  N  -17.070   -3.520  -43.058   20.636  -1.656  -2.334  H44    58A  106  
58A  H45    H45  H  0  1  N  N  N  -18.094   -3.293  -44.516   20.261  -1.811  -0.601  H45    58A  107  
58A  H46    H46  H  0  1  N  N  N  -19.818   -4.194  -43.207   20.163  -4.277  -0.842  H46    58A  108  
58A  H47    H47  H  0  1  N  N  N  -18.993   -5.779  -43.394   20.538  -4.122  -2.575  H47    58A  109  
58A  H49    H49  H  0  1  N  N  N   -8.077   -8.780  -58.197    1.707  -3.855   1.482  H49    58A  110  
58A  H50    H50  H  0  1  N  N  N   -7.332   -9.097  -56.594    0.994  -3.657   3.100  H50    58A  111  
58A  H51    H51  H  0  1  N  N  N   -9.758   -7.209  -53.931   -2.029  -1.038   1.447  H51    58A  112  
58A  H52    H52  H  0  1  N  N  N  -10.143   -6.004  -55.207   -1.315  -1.236  -0.172  H52    58A  113  
58A  H53    H53  H  0  1  N  N  N  -12.172   -7.554  -55.766   -2.645  -3.301  -0.506  H53    58A  114  
58A  H54    H54  H  0  1  N  N  N  -11.855   -8.304  -54.165   -3.359  -3.103   1.113  H54    58A  115  
58A  H55    H55  H  0  1  N  N  N  -11.831   -5.479  -53.708   -4.307  -0.917   0.428  H55    58A  116  
58A  H56    H56  H  0  1  N  N  N  -13.223   -5.778  -54.803   -3.593  -1.115  -1.191  H56    58A  117  
58A  H57    H57  H  0  1  N  N  N  -14.287   -7.263  -53.229   -4.923  -3.181  -1.525  H57    58A  118  
58A  H58    H58  H  0  1  N  N  N  -12.787   -7.445  -52.258   -5.637  -2.983   0.094  H58    58A  119  
58A  H59    H59  H  0  1  N  N  N  -13.562   -5.818  -50.863   -6.585  -0.796  -0.592  H59    58A  120  
58A  H60    H60  H  0  1  N  N  N  -13.402   -4.643  -52.213   -5.871  -0.994  -2.210  H60    58A  121  
58A  H61    H61  H  0  1  N  N  N  -15.683   -4.641  -52.671   -7.201  -3.060  -2.544  H61    58A  122  
58A  H62    H62  H  0  1  N  N  N  -15.892   -6.360  -52.195   -7.915  -2.862  -0.926  H62    58A  123  
58A  H63    H63  H  0  1  N  N  N  -15.446   -5.457  -49.750   -8.863  -0.676  -1.611  H63    58A  124  
58A  H64    H64  H  0  1  N  N  N  -15.883   -3.864  -50.456   -8.149  -0.873  -3.230  H64    58A  125  
58A  H65    H65  H  0  1  N  N  N  -18.143   -5.568  -51.243   -9.641  -3.027  -3.488  H65    58A  126  
58A  H67    H67  H  0  1  N  N  N  -17.365   -5.018  -48.100  -11.071  -1.081  -1.650  H67    58A  127  
58A  H69    H69  H  0  1  N  N  N  -20.069   -4.756  -49.452  -12.827  -2.074  -3.341  H69    58A  128  
58A  H70    H70  H  0  1  N  N  N  -19.748   -6.506  -49.205  -11.824  -3.543  -3.389  H70    58A  129  
58A  H71    H71  H  0  1  N  N  N  -20.015   -6.375  -46.888  -12.199  -3.878  -0.961  H71    58A  130  
58A  H72    H72  H  0  1  N  N  N  -19.431   -4.679  -46.805  -13.202  -2.408  -0.913  H72    58A  131  
58A  H73    H73  H  0  1  N  N  N  -21.900   -4.709  -48.333  -14.770  -3.425  -2.542  H73    58A  132  
58A  H74    H74  H  0  1  N  N  N  -22.166   -5.649  -46.826  -13.767  -4.895  -2.590  H74    58A  133  
58A  H75    H75  H  0  1  N  N  N  -20.776   -3.392  -45.918  -14.143  -5.230  -0.162  H75    58A  134  
58A  H76    H76  H  0  1  N  N  N  -21.825   -2.724  -47.214  -15.145  -3.760  -0.114  H76    58A  135  
58A  H77    H77  H  0  1  N  N  N  -23.567   -2.748  -45.796  -16.714  -4.777  -1.743  H77    58A  136  
58A  H78    H78  H  0  1  N  N  N  -23.431   -4.536  -45.682  -15.711  -6.247  -1.791  H78    58A  137  
58A  H79    H79  H  0  1  N  N  N  -23.055   -2.528  -43.927  -16.086  -6.581   0.637  H79    58A  138  
58A  H80    H80  H  0  1  N  N  N  -23.104   -4.316  -43.762  -17.089  -5.111   0.685  H80    58A  139  
58A  C1     C45  C  0  1  N  N  N        ?        ?        ?   22.176  -3.634  -1.263  C1     58A  140  
58A  C2     C46  C  0  1  N  N  N        ?        ?        ?   22.740  -5.056  -1.268  C2     58A  141  
58A  C3     C47  C  0  1  N  N  N        ?        ?        ?  -17.981  -6.763  -0.373  C3     58A  142  
58A  C4     C48  C  0  1  N  N  N        ?        ?        ?  -18.706  -7.298   0.864  C4     58A  143  
58A  H33    H33  H  0  1  N  N  N        ?        ?        ?   22.695  -3.035  -2.012  H33    58A  144  
58A  H35    H35  H  0  1  N  N  N        ?        ?        ?   22.320  -3.190  -0.279  H35    58A  145  
58A  H48    H48  H  0  1  N  N  N        ?        ?        ?   22.597  -5.501  -2.253  H48    58A  146  
58A  H66    H66  H  0  1  N  N  N        ?        ?        ?   23.805  -5.026  -1.035  H66    58A  147  
58A  H68    H68  H  0  1  N  N  N        ?        ?        ?   22.222  -5.656  -0.520  H68    58A  148  
58A  H81    H81  H  0  1  N  N  N        ?        ?        ?  -18.657  -6.128  -0.945  H81    58A  149  
58A  H82    H82  H  0  1  N  N  N        ?        ?        ?  -17.655  -7.598  -0.992  H82    58A  150  
58A  H83    H83  H  0  1  N  N  N        ?        ?        ?  -19.033  -6.463   1.484  H83    58A  151  
58A  H84    H84  H  0  1  N  N  N        ?        ?        ?  -19.574  -7.880   0.552  H84    58A  152  
58A  H85    H85  H  0  1  N  N  N        ?        ?        ?  -18.030  -7.933   1.436  H85    58A  153  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
58A  "O3'"  "C3'"  SING  N  N    1  
58A  "O2'"  "C2'"  SING  N  N    2  
58A  "C3'"  "C2'"  SING  N  N    3  
58A  "C3'"  "C4'"  SING  N  N    4  
58A  "C2'"  "C1'"  SING  N  N    5  
58A  OAX    PAV    DOUB  N  N    6  
58A  OAA    CAB    DOUB  N  N    7  
58A  "C5'"  "C4'"  SING  N  N    8  
58A  "C5'"  "O5'"  SING  N  N    9  
58A  "C4'"  "O4'"  SING  N  N   10  
58A  "C1'"  NAH    SING  N  N   11  
58A  "C1'"  "O4'"  SING  N  N   12  
58A  CAB    NAH    SING  N  N   13  
58A  CAB    NAC    SING  N  N   14  
58A  NAH    CAG    SING  N  N   15  
58A  "O5'"  PAR    SING  N  N   16  
58A  NAC    CAD    DOUB  N  N   17  
58A  CAG    CAF    DOUB  N  N   18  
58A  PAV    OAU    SING  N  N   19  
58A  PAV    OAW    SING  N  N   20  
58A  PAV    OAY    SING  N  N   21  
58A  CAD    CAF    SING  N  N   22  
58A  CAD    NAE    SING  N  N   23  
58A  OAU    PAR    SING  N  N   24  
58A  CAZ    OAY    SING  N  N   25  
58A  CAZ    CBA    SING  N  N   26  
58A  PAR    OAT    DOUB  N  N   27  
58A  PAR    OAS    SING  N  N   28  
58A  CBA    CBC    SING  N  N   29  
58A  CBA    OBB    SING  N  N   30  
58A  CBC    OBD    SING  N  N   31  
58A  OBD    CBE    SING  N  N   32  
58A  OBB    CBU    SING  N  N   33  
58A  OCK    CBU    DOUB  N  N   34  
58A  OCL    CBE    DOUB  N  N   35  
58A  CBU    CBV    SING  N  N   36  
58A  CBE    CBF    SING  N  N   37  
58A  CBF    CBG    SING  N  N   38  
58A  CBG    CBH    SING  N  N   39  
58A  CBV    CBW    SING  N  N   40  
58A  CBW    CBX    SING  N  N   41  
58A  CBH    CBI    SING  N  N   42  
58A  CBI    CBJ    SING  N  N   43  
58A  CBX    CBY    SING  N  N   44  
58A  CBY    CBZ    SING  N  N   45  
58A  CBK    CBJ    SING  N  N   46  
58A  CBK    CBL    SING  N  N   47  
58A  CBZ    CCA    SING  N  N   48  
58A  CBL    CBM    SING  N  N   49  
58A  CBM    CBN    DOUB  N  E   50  
58A  CCA    CCB    SING  N  N   51  
58A  CBN    CBO    SING  N  N   52  
58A  CBO    CBP    SING  N  N   53  
58A  CCB    CCC    SING  N  N   54  
58A  CCC    CCD    DOUB  N  E   55  
58A  CBP    CBQ    SING  N  N   56  
58A  CBQ    CBR    SING  N  N   57  
58A  CCE    CCD    SING  N  N   58  
58A  CCE    CCF    SING  N  N   59  
58A  CBR    CBS    SING  N  N   60  
58A  CCF    CCG    SING  N  N   61  
58A  CCG    CCH    SING  N  N   62  
58A  CBS    CBT    SING  N  N   63  
58A  CCH    CCI    SING  N  N   64  
58A  CCI    CCJ    SING  N  N   65  
58A  NAE    H1     SING  N  N   66  
58A  NAE    H2     SING  N  N   67  
58A  CAF    H3     SING  N  N   68  
58A  CAG    H4     SING  N  N   69  
58A  "C1'"  H5     SING  N  N   70  
58A  "C2'"  H6     SING  N  N   71  
58A  "O2'"  H7     SING  N  N   72  
58A  "C3'"  H8     SING  N  N   73  
58A  "O3'"  H9     SING  N  N   74  
58A  "C4'"  H10    SING  N  N   75  
58A  "C5'"  H11    SING  N  N   76  
58A  "C5'"  H12    SING  N  N   77  
58A  OAS    H13    SING  N  N   78  
58A  OAW    H14    SING  N  N   79  
58A  CAZ    H15    SING  N  N   80  
58A  CAZ    H16    SING  N  N   81  
58A  CBA    H17    SING  N  N   82  
58A  CBV    H18    SING  N  N   83  
58A  CBV    H19    SING  N  N   84  
58A  CBW    H20    SING  N  N   85  
58A  CBW    H21    SING  N  N   86  
58A  CBX    H22    SING  N  N   87  
58A  CBX    H23    SING  N  N   88  
58A  CBY    H24    SING  N  N   89  
58A  CBY    H25    SING  N  N   90  
58A  CBZ    H26    SING  N  N   91  
58A  CBZ    H27    SING  N  N   92  
58A  CCA    H28    SING  N  N   93  
58A  CCA    H29    SING  N  N   94  
58A  CCB    H30    SING  N  N   95  
58A  CCB    H31    SING  N  N   96  
58A  CCC    H32    SING  N  N   97  
58A  CCD    H34    SING  N  N   98  
58A  CCE    H36    SING  N  N   99  
58A  CCE    H37    SING  N  N  100  
58A  CCF    H38    SING  N  N  101  
58A  CCF    H39    SING  N  N  102  
58A  CCG    H40    SING  N  N  103  
58A  CCG    H41    SING  N  N  104  
58A  CCH    H42    SING  N  N  105  
58A  CCH    H43    SING  N  N  106  
58A  CCI    H44    SING  N  N  107  
58A  CCI    H45    SING  N  N  108  
58A  CCJ    H46    SING  N  N  109  
58A  CCJ    H47    SING  N  N  110  
58A  CBC    H49    SING  N  N  111  
58A  CBC    H50    SING  N  N  112  
58A  CBF    H51    SING  N  N  113  
58A  CBF    H52    SING  N  N  114  
58A  CBG    H53    SING  N  N  115  
58A  CBG    H54    SING  N  N  116  
58A  CBH    H55    SING  N  N  117  
58A  CBH    H56    SING  N  N  118  
58A  CBI    H57    SING  N  N  119  
58A  CBI    H58    SING  N  N  120  
58A  CBJ    H59    SING  N  N  121  
58A  CBJ    H60    SING  N  N  122  
58A  CBK    H61    SING  N  N  123  
58A  CBK    H62    SING  N  N  124  
58A  CBL    H63    SING  N  N  125  
58A  CBL    H64    SING  N  N  126  
58A  CBM    H65    SING  N  N  127  
58A  CBN    H67    SING  N  N  128  
58A  CBO    H69    SING  N  N  129  
58A  CBO    H70    SING  N  N  130  
58A  CBP    H71    SING  N  N  131  
58A  CBP    H72    SING  N  N  132  
58A  CBQ    H73    SING  N  N  133  
58A  CBQ    H74    SING  N  N  134  
58A  CBR    H75    SING  N  N  135  
58A  CBR    H76    SING  N  N  136  
58A  CBS    H77    SING  N  N  137  
58A  CBS    H78    SING  N  N  138  
58A  CBT    H79    SING  N  N  139  
58A  CBT    H80    SING  N  N  140  
58A  CCJ    C1     SING  N  N  141  
58A  C1     C2     SING  N  N  142  
58A  CBT    C3     SING  N  N  143  
58A  C3     C4     SING  N  N  144  
58A  C1     H33    SING  N  N  145  
58A  C1     H35    SING  N  N  146  
58A  C2     H48    SING  N  N  147  
58A  C2     H66    SING  N  N  148  
58A  C2     H68    SING  N  N  149  
58A  C3     H81    SING  N  N  150  
58A  C3     H82    SING  N  N  151  
58A  C4     H83    SING  N  N  152  
58A  C4     H84    SING  N  N  153  
58A  C4     H85    SING  N  N  154  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
58A  SMILES            ACDLabs               12.01  "O=C1N(C=CC(=N1)N)C2OC(C(C2O)O)COP(=O)(O)OP(O)(OCC(COC(CCCCCCC\C=C\CCCCCCCC)=O)OC(CCCCCCCC=[C@H]CCCCCCCC)=O)=O"  
58A  InChI             InChI                 1.03   "InChI=1S/C48H85N3O15P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-43(52)61-37-40(64-44(53)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)38-62-67(57,58)66-68(59,60)63-39-41-45(54)46(55)47(65-41)51-36-35-42(49)50-48(51)56/h17-20,35-36,40-41,45-47,54-55H,3-16,21-34,37-39H2,1-2H3,(H,57,58)(H,59,60)(H2,49,50,56)/b19-17+,20-18+/t40-,41-,45-,46-,47-/m1/s1"  
58A  InChIKey          InChI                 1.03   WVVFFOKRFKIBHD-ZIPNUMAKSA-N  
58A  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=NC2=O)N)OC(=O)CCCCCCC\C=C\CCCCCCCC"  
58A  SMILES            CACTVS                3.385  "CCCCCCCCC=CCCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N)OC(=O)CCCCCCCC=CCCCCCCCC"  
58A  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@H](COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)O)OC(=O)CCCCCCCC=CCCCCCCCC"  
58A  SMILES            "OpenEye OEToolkits"  1.9.2  "CCCCCCCCC=CCCCCCCCC(=O)OCC(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)N2C=CC(=NC2=O)N)O)O)OC(=O)CCCCCCCC=CCCCCCCCC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
58A  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine"  
58A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[(2R)-3-[[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-octadec-9-enoyloxy-propyl] (E)-octadec-9-enoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
58A  "Create component"  2015-08-19  RCSB  
58A  "Initial release"   2015-11-04  RCSB  
58A  "Modify synonyms"   2020-05-26  PDBE  
58A  "Modify synonyms"   2020-07-02  RCSB  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  58A  cytidinediphosphate-dioleoylglycerol    PUBCHEM  ?  
2  58A  "CDP-1,2-dioleoyl-sn-glycerol"          CHEBI    ?  
##
