data_5CT
#

_chem_comp.id                                   5CT
_chem_comp.name                                 Hypusine
_chem_comp.type                                 "peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C10 H23 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              LYS
_chem_comp.pdbx_synonyms                        "N~6~-[(2S)-4-amino-2-hydroxybutyl]-L-lysine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-09-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       233.308
_chem_comp.one_letter_code                      K
_chem_comp.three_letter_code                    5CT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5DLQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5CT  CG   C1   C  0  1  N  N  N  68.016  5.408  773.743   2.017   0.396   0.428  CG   5CT   1  
5CT  CD   C2   C  0  1  N  N  N  66.572  5.883  774.019   0.766  -0.220  -0.203  CD   5CT   2  
5CT  CE   C3   C  0  1  N  N  N  65.761  4.890  774.897  -0.481   0.409   0.420  CE   5CT   3  
5CT  NZ   N1   N  0  1  N  N  N  64.517  5.501  775.340  -1.682  -0.182  -0.185  NZ   5CT   4  
5CT  C1   C4   C  0  1  N  N  N  63.426  4.556  775.150  -2.903   0.400   0.390  C1   5CT   5  
5CT  C2   C5   C  0  1  N  N  S  62.083  5.181  775.515  -4.129  -0.240  -0.264  C2   5CT   6  
5CT  C3   C6   C  0  1  N  N  N  61.325  5.537  774.240  -5.396   0.452   0.243  C3   5CT   7  
5CT  C4   C7   C  0  1  N  N  N  60.057  4.691  774.058  -6.613  -0.101  -0.502  C4   5CT   8  
5CT  N1   N2   N  0  1  N  N  N  59.151  5.347  773.161  -7.829   0.563  -0.015  N1   5CT   9  
5CT  O1   O1   O  0  1  N  N  N  62.280  6.339  776.267  -4.178  -1.628   0.070  O1   5CT  10  
5CT  CB   C8   C  0  1  N  N  N  68.083  4.077  772.966   3.265  -0.233  -0.195  CB   5CT  11  
5CT  CA   C9   C  0  1  N  N  S  69.005  4.144  771.738   4.515   0.382   0.436  CA   5CT  12  
5CT  C    C10  C  0  1  N  N  N  70.393  4.551  772.110   5.740  -0.322  -0.087  C    5CT  13  
5CT  O    O2   O  0  1  N  N  N  70.707  5.761  772.244   6.395   0.180  -0.970  O    5CT  14  
5CT  N    N3   N  0  1  N  N  N  69.096  2.863  771.123   4.586   1.809   0.091  N    5CT  15  
5CT  OXT  O3   O  0  1  N  Y  N  71.263  3.560  772.260   6.105  -1.507   0.428  O2   5CT  16  
5CT  H1   H1   H  0  1  N  N  N  68.530  5.276  774.706   2.023   1.471   0.248  H1   5CT  17  
5CT  H2   H2   H  0  1  N  N  N  68.532  6.182  773.155   2.013   0.208   1.502  H2   5CT  18  
5CT  H3   H3   H  0  1  N  N  N  66.615  6.853  774.536   0.771  -0.032  -1.276  H3   5CT  19  
5CT  H4   H4   H  0  1  N  N  N  66.053  6.004  773.057   0.760  -1.295  -0.022  H4   5CT  20  
5CT  H5   H5   H  0  1  N  N  N  65.532  3.989  774.308  -0.486   0.221   1.494  H5   5CT  21  
5CT  H6   H6   H  0  1  N  N  N  66.361  4.611  775.776  -0.475   1.484   0.240  H6   5CT  22  
5CT  H7   H7   H  0  1  N  N  N  64.588  5.740  776.308  -1.670  -0.077  -1.189  H7   5CT  23  
5CT  H9   H9   H  0  1  N  N  N  63.401  4.244  774.096  -2.924   0.211   1.463  H9   5CT  24  
5CT  H10  H10  H  0  1  N  N  N  63.598  3.677  775.789  -2.913   1.474   0.209  H10  5CT  25  
5CT  H11  H11  H  0  1  N  N  N  61.494  4.446  776.083  -4.063  -0.128  -1.347  H11  5CT  26  
5CT  H12  H12  H  0  1  N  N  N  61.987  5.371  773.377  -5.509   0.266   1.311  H12  5CT  27  
5CT  H13  H13  H  0  1  N  N  N  61.039  6.598  774.284  -5.319   1.525   0.067  H13  5CT  28  
5CT  H14  H14  H  0  1  N  N  N  59.568  4.554  775.034  -6.500   0.085  -1.570  H14  5CT  29  
5CT  H15  H15  H  0  1  N  N  N  60.331  3.709  773.645  -6.689  -1.174  -0.327  H15  5CT  30  
5CT  H16  H16  H  0  1  N  N  N  58.329  4.789  773.049  -7.756   1.565  -0.108  H16  5CT  31  
5CT  H17  H17  H  0  1  N  N  N  58.899  6.239  773.535  -8.647   0.215  -0.493  H17  5CT  32  
5CT  H19  H19  H  0  1  N  N  N  62.752  6.124  777.063  -4.238  -1.802   1.019  H19  5CT  33  
5CT  H20  H20  H  0  1  N  N  N  67.069  3.816  772.629   3.258  -1.308  -0.014  H20  5CT  34  
5CT  H21  H21  H  0  1  N  N  N  68.457  3.295  773.643   3.269  -0.045  -1.268  H21  5CT  35  
5CT  H22  H22  H  0  1  N  N  N  68.592  4.876  771.029   4.468   0.272   1.519  H22  5CT  36  
5CT  H23  H23  H  0  1  N  N  N  68.182  2.554  770.858   4.631   1.937  -0.908  H23  5CT  37  
5CT  H24  H24  H  0  1  N  N  N  69.676  2.924  770.310   3.808   2.315   0.486  H24  5CT  38  
5CT  H26  H26  H  0  1  N  N  N  72.117  3.917  772.475   6.898  -1.920   0.060  H26  5CT  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CT  N    CA   SING  N  N   1  
5CT  CA   C    SING  N  N   2  
5CT  CA   CB   SING  N  N   3  
5CT  C    O    DOUB  N  N   4  
5CT  CB   CG   SING  N  N   5  
5CT  N1   C4   SING  N  N   6  
5CT  CG   CD   SING  N  N   7  
5CT  CD   CE   SING  N  N   8  
5CT  C4   C3   SING  N  N   9  
5CT  C3   C2   SING  N  N  10  
5CT  CE   NZ   SING  N  N  11  
5CT  C1   NZ   SING  N  N  12  
5CT  C1   C2   SING  N  N  13  
5CT  C2   O1   SING  N  N  14  
5CT  C    OXT  SING  N  N  15  
5CT  CG   H1   SING  N  N  16  
5CT  CG   H2   SING  N  N  17  
5CT  CD   H3   SING  N  N  18  
5CT  CD   H4   SING  N  N  19  
5CT  CE   H5   SING  N  N  20  
5CT  CE   H6   SING  N  N  21  
5CT  NZ   H7   SING  N  N  22  
5CT  C1   H9   SING  N  N  23  
5CT  C1   H10  SING  N  N  24  
5CT  C2   H11  SING  N  N  25  
5CT  C3   H12  SING  N  N  26  
5CT  C3   H13  SING  N  N  27  
5CT  C4   H14  SING  N  N  28  
5CT  C4   H15  SING  N  N  29  
5CT  N1   H16  SING  N  N  30  
5CT  N1   H17  SING  N  N  31  
5CT  O1   H19  SING  N  N  32  
5CT  CB   H20  SING  N  N  33  
5CT  CB   H21  SING  N  N  34  
5CT  CA   H22  SING  N  N  35  
5CT  N    H23  SING  N  N  36  
5CT  N    H24  SING  N  N  37  
5CT  OXT  H26  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5CT  SMILES            ACDLabs               12.01  "C(CCNCC(O)CCN)CC(C(=O)O)N"  
5CT  InChI             InChI                 1.03   "InChI=1S/C10H23N3O3/c11-5-4-8(14)7-13-6-2-1-3-9(12)10(15)16/h8-9,13-14H,1-7,11-12H2,(H,15,16)/t8-,9-/m0/s1"  
5CT  InChIKey          InChI                 1.03   BZUIJMCJNWUGKQ-IUCAKERBSA-N  
5CT  SMILES_CANONICAL  CACTVS                3.385  "NCC[C@H](O)CNCCCC[C@H](N)C(O)=O"  
5CT  SMILES            CACTVS                3.385  "NCC[CH](O)CNCCCC[CH](N)C(O)=O"  
5CT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "C(CCNC[C@H](CCN)O)C[C@@H](C(=O)O)N"  
5CT  SMILES            "OpenEye OEToolkits"  2.0.4  "C(CCNCC(CCN)O)CC(C(=O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5CT  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~6~-[(2S)-4-amino-2-hydroxybutyl]-L-lysine"  
5CT  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "(2~{S})-2-azanyl-6-[[(2~{S})-4-azanyl-2-oxidanyl-butyl]amino]hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5CT  "Create component"    2015-09-07  RCSB  
5CT  "Other modification"  2015-09-07  EBI   
5CT  "Initial release"     2016-01-20  RCSB  
5CT  "Other modification"  2016-04-27  EBI   
5CT  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5CT
_pdbx_chem_comp_synonyms.name        "N~6~-[(2S)-4-amino-2-hydroxybutyl]-L-lysine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
