data_5IZ
#

_chem_comp.id                                   5IZ
_chem_comp.name                                 "(2S,3S)-3-methyl-N-[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(E)-3-phenylprop-2-enoyl]amino]pentanamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H31 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-02-02
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       413.510
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5IZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7WOF
_chem_comp.pdbx_subcomponent_list               "TCA ILE ELF"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5IZ  C20  C5   C  0  1  N  N  N  -11.206  11.697  69.362   2.485   0.217   0.595  C1    TCA   1  
5IZ  O29  O3   O  0  1  N  N  N  -11.589  11.854  68.286   2.290   0.084   1.789  O     TCA   2  
5IZ  C21  C6   C  0  1  N  N  N  -10.890  10.324  69.910   3.796  -0.105   0.028  C2    TCA   3  
5IZ  C22  C7   C  0  1  N  N  N  -10.209   9.484  69.087   4.787  -0.548   0.829  C3    TCA   4  
5IZ  C23  C21  C  0  1  Y  N  N  -10.009   8.188  69.826   6.105  -0.871   0.259  C31   TCA   5  
5IZ  C24  C8   C  0  1  Y  N  N  -10.173   6.966  69.180   7.135  -1.331   1.086  C32   TCA   6  
5IZ  C25  C22  C  0  1  Y  N  N   -9.979   5.746  69.921   8.366  -1.632   0.544  C33   TCA   7  
5IZ  C26  C9   C  0  1  Y  N  N   -9.634   5.792  71.289   8.585  -1.481  -0.814  C34   TCA   8  
5IZ  C27  C23  C  0  1  Y  N  N   -9.477   7.026  71.937   7.571  -1.026  -1.639  C35   TCA   9  
5IZ  C28  C10  C  0  1  Y  N  N   -9.670   8.228  71.212   6.334  -0.721  -1.112  C36   TCA  10  
5IZ  N19  N3   N  0  1  N  N  N  -11.010  12.816  70.270   1.495   0.660  -0.205  N     ILE  11  
5IZ  C14  C18  C  0  1  N  N  S  -11.293  14.216  69.926   0.220   1.086   0.376  CA    ILE  12  
5IZ  C13  C2   C  0  1  N  N  N  -10.665  14.697  68.623  -0.885   0.868  -0.626  C     ILE  13  
5IZ  O30  O4   O  0  1  N  N  N   -9.501  14.580  68.435  -0.616   0.645  -1.787  O     ILE  14  
5IZ  C15  C3   C  0  1  N  N  S  -10.782  15.013  71.073   0.295   2.570   0.738  CB    ILE  15  
5IZ  C17  C4   C  0  1  N  N  N  -11.539  14.526  72.377  -0.998   2.990   1.441  CG1   ILE  16  
5IZ  C16  C19  C  0  1  N  N  N  -11.066  16.483  70.815   0.474   3.398  -0.536  CG2   ILE  17  
5IZ  C18  C20  C  0  1  N  N  N  -13.092  14.702  72.290  -1.092   2.288   2.797  CD1   ILE  18  
5IZ  C07  C16  C  0  1  N  N  N   -9.008  11.922  65.173  -4.116  -3.490  -0.555  C6    ELF  19  
5IZ  C03  C12  C  0  1  N  N  S  -10.856  15.757  66.378  -3.248   0.801  -1.219  C11   ELF  20  
5IZ  C06  C15  C  0  1  N  N  N   -9.468  13.274  65.348  -4.062  -2.063  -1.113  C13   ELF  21  
5IZ  C10  C1   C  0  1  N  N  N  -11.586  12.592  64.054  -5.511  -1.503   0.823  C15   ELF  22  
5IZ  C04  C13  C  0  1  N  N  N  -11.336  14.868  65.117  -4.525   0.321  -0.527  C17   ELF  23  
5IZ  C02  C11  C  0  1  N  N  N  -11.137  17.220  66.091  -3.497   2.144  -1.857  C24   ELF  24  
5IZ  C05  C14  C  0  1  N  N  S  -10.914  13.368  65.262  -4.301  -1.083   0.038  C25   ELF  25  
5IZ  C08  C17  C  0  1  N  N  N   -9.249  11.477  63.764  -5.548  -3.787  -0.107  C27   ELF  26  
5IZ  N12  N1   N  0  1  N  N  N  -11.494  15.319  67.604  -2.173   0.922  -0.231  N3    ELF  27  
5IZ  N09  N2   N  0  1  N  N  N  -10.708  11.613  63.281  -6.042  -2.725   0.761  N4    ELF  28  
5IZ  O01  O1   O  0  1  N  N  N  -10.666  17.718  65.034  -2.844   3.102  -1.521  O3    ELF  29  
5IZ  O11  O2   O  0  1  N  N  N  -12.667  12.762  63.792  -6.029  -0.689   1.558  O4    ELF  30  
5IZ  H5   H5   H  0  1  N  N  N  -11.190  10.026  70.904   3.970   0.013  -1.031  H2    TCA  31  
5IZ  H7   H7   H  0  1  N  N  N   -9.873   9.706  68.085   4.613  -0.665   1.888  H3    TCA  32  
5IZ  H9   H9   H  0  1  N  N  N  -10.443   6.933  68.135   6.967  -1.445   2.147  H32   TCA  33  
5IZ  H30  H30  H  0  1  N  N  N  -10.098   4.792  69.428   9.163  -1.987   1.182  H33   TCA  34  
5IZ  H10  H10  H  0  1  N  N  N   -9.490   4.874  71.839   9.552  -1.718  -1.232  H34   TCA  35  
5IZ  H31  H31  H  0  1  N  N  N   -9.210   7.060  72.983   7.749  -0.911  -2.698  H35   TCA  36  
5IZ  H11  H11  H  0  1  N  N  N   -9.560   9.180  71.711   5.543  -0.366  -1.758  H36   TCA  37  
5IZ  H33  H33  H  0  1  N  N  N  -10.661  12.620  71.186   1.628   0.696  -1.165  H2    ILE  38  
5IZ  H23  H23  H  0  1  N  N  N  -12.382  14.355  69.856   0.016   0.502   1.274  HA    ILE  39  
5IZ  H2   H2   H  0  1  N  N  N   -9.701  14.854  71.202   1.141   2.739   1.404  HB    ILE  40  
5IZ  H3   H3   H  0  1  N  N  N  -11.316  13.460  72.533  -0.997   4.069   1.589  HG12  ILE  41  
5IZ  H4   H4   H  0  1  N  N  N  -11.169  15.108  73.234  -1.854   2.708   0.826  HG13  ILE  42  
5IZ  H24  H24  H  0  1  N  N  N  -10.692  17.083  71.658   0.616   4.446  -0.272  HG21  ILE  43  
5IZ  H25  H25  H  0  1  N  N  N  -10.561  16.797  69.889   1.347   3.039  -1.082  HG22  ILE  44  
5IZ  H26  H26  H  0  1  N  N  N  -12.151  16.634  70.711  -0.412   3.298  -1.162  HG23  ILE  45  
5IZ  H27  H27  H  0  1  N  N  N  -13.555  14.347  73.223  -1.031   1.209   2.654  HD11  ILE  46  
5IZ  H28  H28  H  0  1  N  N  N  -13.333  15.765  72.143  -0.271   2.617   3.434  HD12  ILE  47  
5IZ  H29  H29  H  0  1  N  N  N  -13.480  14.118  71.443  -2.042   2.539   3.271  HD13  ILE  48  
5IZ  H19  H19  H  0  1  N  N  N   -9.553  11.260  65.862  -3.821  -4.197  -1.330  H1    ELF  49  
5IZ  H20  H20  H  0  1  N  N  N   -7.931  11.873  65.391  -3.439  -3.576   0.295  H2    ELF  50  
5IZ  H13  H13  H  0  1  N  N  N   -9.768  15.626  66.471  -2.958   0.083  -1.986  H3    ELF  51  
5IZ  H17  H17  H  0  1  N  N  N   -9.146  13.634  66.336  -4.836  -1.936  -1.870  H4    ELF  52  
5IZ  H18  H18  H  0  1  N  N  N   -9.023  13.905  64.565  -3.083  -1.878  -1.555  H5    ELF  53  
5IZ  H14  H14  H  0  1  N  N  N  -10.884  15.277  64.201  -4.777   1.003   0.285  H6    ELF  54  
5IZ  H15  H15  H  0  1  N  N  N  -12.432  14.923  65.041  -5.342   0.296  -1.248  H7    ELF  55  
5IZ  H12  H12  H  0  1  N  N  N  -11.724  17.817  66.773  -4.259   2.249  -2.615  H8    ELF  56  
5IZ  H16  H16  H  0  1  N  N  N  -11.358  12.983  66.192  -3.430  -1.076   0.692  H9    ELF  57  
5IZ  H21  H21  H  0  1  N  N  N   -8.960  10.418  63.686  -6.191  -3.864  -0.984  H10   ELF  58  
5IZ  H22  H22  H  0  1  N  N  N   -8.612  12.081  63.101  -5.566  -4.731   0.438  H11   ELF  59  
5IZ  H1   H1   H  0  1  N  N  N  -12.476  15.441  67.745  -2.388   1.041   0.708  H12   ELF  60  
5IZ  H32  H32  H  0  1  N  N  N  -11.058  11.089  62.505  -6.804  -2.919   1.328  H15   ELF  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5IZ  N09  C08  SING  N  N   1  
5IZ  N09  C10  SING  N  N   2  
5IZ  C08  C07  SING  N  N   3  
5IZ  O11  C10  DOUB  N  N   4  
5IZ  C10  C05  SING  N  N   5  
5IZ  O01  C02  DOUB  N  N   6  
5IZ  C04  C05  SING  N  N   7  
5IZ  C04  C03  SING  N  N   8  
5IZ  C07  C06  SING  N  N   9  
5IZ  C05  C06  SING  N  N  10  
5IZ  C02  C03  SING  N  N  11  
5IZ  C03  N12  SING  N  N  12  
5IZ  N12  C13  SING  N  N  13  
5IZ  O29  C20  DOUB  N  N  14  
5IZ  O30  C13  DOUB  N  N  15  
5IZ  C13  C14  SING  N  N  16  
5IZ  C22  C23  SING  N  N  17  
5IZ  C22  C21  DOUB  N  E  18  
5IZ  C24  C23  DOUB  Y  N  19  
5IZ  C24  C25  SING  Y  N  20  
5IZ  C20  C21  SING  N  N  21  
5IZ  C20  N19  SING  N  N  22  
5IZ  C23  C28  SING  Y  N  23  
5IZ  C25  C26  DOUB  Y  N  24  
5IZ  C14  N19  SING  N  N  25  
5IZ  C14  C15  SING  N  N  26  
5IZ  C16  C15  SING  N  N  27  
5IZ  C15  C17  SING  N  N  28  
5IZ  C28  C27  DOUB  Y  N  29  
5IZ  C26  C27  SING  Y  N  30  
5IZ  C18  C17  SING  N  N  31  
5IZ  N12  H1   SING  N  N  32  
5IZ  C15  H2   SING  N  N  33  
5IZ  C17  H3   SING  N  N  34  
5IZ  C17  H4   SING  N  N  35  
5IZ  C21  H5   SING  N  N  36  
5IZ  C22  H7   SING  N  N  37  
5IZ  C24  H9   SING  N  N  38  
5IZ  C26  H10  SING  N  N  39  
5IZ  C28  H11  SING  N  N  40  
5IZ  C02  H12  SING  N  N  41  
5IZ  C03  H13  SING  N  N  42  
5IZ  C04  H14  SING  N  N  43  
5IZ  C04  H15  SING  N  N  44  
5IZ  C05  H16  SING  N  N  45  
5IZ  C06  H17  SING  N  N  46  
5IZ  C06  H18  SING  N  N  47  
5IZ  C07  H19  SING  N  N  48  
5IZ  C07  H20  SING  N  N  49  
5IZ  C08  H21  SING  N  N  50  
5IZ  C08  H22  SING  N  N  51  
5IZ  C14  H23  SING  N  N  52  
5IZ  C16  H24  SING  N  N  53  
5IZ  C16  H25  SING  N  N  54  
5IZ  C16  H26  SING  N  N  55  
5IZ  C18  H27  SING  N  N  56  
5IZ  C18  H28  SING  N  N  57  
5IZ  C18  H29  SING  N  N  58  
5IZ  C25  H30  SING  N  N  59  
5IZ  C27  H31  SING  N  N  60  
5IZ  N09  H32  SING  N  N  61  
5IZ  N19  H33  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5IZ  InChI             InChI                 1.03   "InChI=1S/C23H31N3O4/c1-3-16(2)21(26-20(28)12-11-17-8-5-4-6-9-17)23(30)25-19(15-27)14-18-10-7-13-24-22(18)29/h4-6,8-9,11-12,15-16,18-19,21H,3,7,10,13-14H2,1-2H3,(H,24,29)(H,25,30)(H,26,28)/b12-11+/t16-,18-,19-,21-/m0/s1"  
5IZ  InChIKey          InChI                 1.03   LLWUOBUNLOPRDK-VXUGWXBBSA-N  
5IZ  SMILES_CANONICAL  CACTVS                3.385  "CC[C@H](C)[C@H](NC(=O)/C=C/c1ccccc1)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O"  
5IZ  SMILES            CACTVS                3.385  "CC[CH](C)[CH](NC(=O)C=Cc1ccccc1)C(=O)N[CH](C[CH]2CCCNC2=O)C=O"  
5IZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC[C@H](C)[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)/C=C/c2ccccc2"  
5IZ  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(C)C(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C=Cc2ccccc2"  
#
_pdbx_chem_comp_identifier.comp_id          5IZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{S})-3-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]pentanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5IZ  "Create component"  2022-02-02  PDBJ  
5IZ  "Initial release"   2022-04-13  RCSB  
##
