data_5YW
#

_chem_comp.id                                   5YW
_chem_comp.name                                 "N-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H26 N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-02-04
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       490.552
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5YW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7WOX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5YW  C1   C1   C  0  1  N  N  N  17.124  25.803   4.550    2.465   6.871   1.636  C1   5YW   1  
5YW  C2   C2   C  0  1  N  N  N  18.099  26.031   5.733    2.251   5.715   0.658  C2   5YW   2  
5YW  C3   C3   C  0  1  N  N  N  18.159  24.755   6.539    0.892   5.065   0.926  C3   5YW   3  
5YW  O1   O1   O  0  1  N  N  N  16.811  24.355   6.889    0.692   3.984   0.012  O1   5YW   4  
5YW  C4   C4   C  0  1  Y  N  N  16.675  23.220   7.651   -0.476   3.296   0.117  C4   5YW   5  
5YW  C5   C5   C  0  1  Y  N  N  17.763  22.432   8.012   -1.408   3.654   1.079  C5   5YW   6  
5YW  C6   C6   C  0  1  Y  N  N  17.556  21.304   8.774   -2.594   2.955   1.186  C6   5YW   7  
5YW  C7   C7   C  0  1  Y  N  N  16.264  20.941   9.182   -2.854   1.893   0.329  C7   5YW   8  
5YW  N1   N1   N  0  1  N  N  N  16.255  19.715   9.921   -4.056   1.185   0.437  N1   5YW   9  
5YW  C8   C8   C  0  1  N  N  N  17.363  18.900   9.992   -4.087  -0.135   0.167  C8   5YW  10  
5YW  O2   O2   O  0  1  N  N  N  18.403  19.120   9.317   -3.053  -0.731  -0.076  O2   5YW  11  
5YW  C9   C9   C  0  1  N  N  N  17.383  17.874  11.065   -5.335  -0.838   0.166  C9   5YW  12  
5YW  C10  C10  C  0  1  N  N  N  18.333  18.040  12.101   -6.358  -1.413   0.166  C10  5YW  13  
5YW  C11  C11  C  0  1  Y  N  N  18.285  17.093  13.209   -7.606  -2.115   0.165  C11  5YW  14  
5YW  C12  C12  C  0  1  Y  N  N  19.444  16.560  13.801   -8.796  -1.433   0.438  C12  5YW  15  
5YW  C13  C13  C  0  1  Y  N  N  19.342  15.659  14.849   -9.994  -2.116   0.436  C13  5YW  16  
5YW  C14  C14  C  0  1  Y  N  N  18.078  15.265  15.293  -10.020  -3.473   0.164  C14  5YW  17  
5YW  C15  C15  C  0  1  Y  N  N  16.919  15.771  14.697   -8.847  -4.155  -0.106  C15  5YW  18  
5YW  C16  C16  C  0  1  Y  N  N  17.023  16.684  13.657   -7.642  -3.485  -0.114  C16  5YW  19  
5YW  C17  C17  C  0  1  Y  N  N  15.168  21.729   8.794   -1.919   1.535  -0.634  C17  5YW  20  
5YW  C18  C18  C  0  1  Y  N  N  15.367  22.883   8.023   -0.736   2.239  -0.743  C18  5YW  21  
5YW  C19  C19  C  0  1  N  N  N  14.211  23.753   7.606    0.275   1.854  -1.792  C19  5YW  22  
5YW  N2   N2   N  0  1  N  N  N  13.487  24.304   8.765    1.332   1.047  -1.179  N2   5YW  23  
5YW  C20  C20  C  0  1  N  N  N  13.944  25.341   9.503    2.351   0.587  -1.932  C20  5YW  24  
5YW  O3   O3   O  0  1  N  N  N  15.173  25.513   9.739    2.393   0.842  -3.119  O3   5YW  25  
5YW  C21  C21  C  0  1  Y  N  N  12.888  26.354   9.927    3.418  -0.228  -1.313  C21  5YW  26  
5YW  C22  C22  C  0  1  Y  N  N  11.538  26.154   9.556    3.368  -0.526   0.051  C22  5YW  27  
5YW  C23  C23  C  0  1  Y  N  N  10.551  27.089   9.920    4.362  -1.286   0.626  C23  5YW  28  
5YW  C24  C24  C  0  1  Y  N  N  10.901  28.237  10.659    5.419  -1.757  -0.152  C24  5YW  29  
5YW  C25  C25  C  0  1  Y  N  N   9.860  29.250  11.000    6.489  -2.575   0.469  C25  5YW  30  
5YW  N3   N3   N  0  1  Y  N  N   8.581  28.954  10.629    6.422  -2.853   1.763  N3   5YW  31  
5YW  C26  C26  C  0  1  Y  N  N   7.659  29.908  10.915    7.359  -3.580   2.348  C26  5YW  32  
5YW  C27  C27  C  0  1  Y  N  N   7.994  31.138  11.541    8.420  -4.052   1.589  C27  5YW  33  
5YW  C28  C28  C  0  1  Y  N  N   9.348  31.345  11.866    8.459  -3.743   0.238  C28  5YW  34  
5YW  N4   N4   N  0  1  Y  N  N  10.299  30.418  11.586    7.487  -3.015  -0.285  N4   5YW  35  
5YW  C29  C29  C  0  1  Y  N  N  12.252  28.465  11.008    5.470  -1.460  -1.514  C29  5YW  36  
5YW  C30  C30  C  0  1  Y  N  N  13.237  27.530  10.638    4.474  -0.705  -2.092  C30  5YW  37  
5YW  H1   H1   H  0  1  N  N  N  17.061  26.719   3.944    3.433   7.334   1.445  H1   5YW  38  
5YW  H2   H2   H  0  1  N  N  N  17.492  24.976   3.926    1.676   7.611   1.503  H2   5YW  39  
5YW  H3   H3   H  0  1  N  N  N  16.127  25.552   4.940    2.439   6.493   2.658  H3   5YW  40  
5YW  H4   H4   H  0  1  N  N  N  19.100  26.278   5.350    2.277   6.093  -0.364  H4   5YW  41  
5YW  H5   H5   H  0  1  N  N  N  17.734  26.855   6.364    3.040   4.975   0.792  H5   5YW  42  
5YW  H6   H6   H  0  1  N  N  N  18.635  23.964   5.942    0.866   4.686   1.948  H6   5YW  43  
5YW  H7   H7   H  0  1  N  N  N  18.743  24.925   7.455    0.103   5.805   0.792  H7   5YW  44  
5YW  H8   H8   H  0  1  N  N  N  18.760  22.702   7.698   -1.206   4.480   1.746  H8   5YW  45  
5YW  H9   H9   H  0  1  N  N  N  18.398  20.692   9.061   -3.320   3.234   1.936  H9   5YW  46  
5YW  H10  H10  H  0  1  N  N  N  15.420  19.442  10.399   -4.867   1.644   0.705  H10  5YW  47  
5YW  H13  H13  H  0  1  N  N  N  20.418  16.854  13.437   -8.777  -0.375   0.651  H13  5YW  48  
5YW  H14  H14  H  0  1  N  N  N  20.232  15.265  15.318  -10.914  -1.591   0.646  H14  5YW  49  
5YW  H15  H15  H  0  1  N  N  N  17.995  14.560  16.107  -10.962  -4.003   0.164  H15  5YW  50  
5YW  H16  H16  H  0  1  N  N  N  15.947  15.453  15.044   -8.875  -5.214  -0.317  H16  5YW  51  
5YW  H17  H17  H  0  1  N  N  N  16.131  17.079  13.193   -6.727  -4.017  -0.331  H17  5YW  52  
5YW  H18  H18  H  0  1  N  N  N  14.169  21.445   9.090   -2.120   0.709  -1.300  H18  5YW  53  
5YW  H19  H19  H  0  1  N  N  N  14.595  24.586   6.999   -0.216   1.276  -2.575  H19  5YW  54  
5YW  H20  H20  H  0  1  N  N  N  13.513  23.152   7.005    0.710   2.755  -2.225  H20  5YW  55  
5YW  H21  H21  H  0  1  N  N  N  12.613  23.890   9.019    1.299   0.843  -0.231  H21  5YW  56  
5YW  H22  H22  H  0  1  N  N  N  11.262  25.277   8.989    2.549  -0.161   0.653  H22  5YW  57  
5YW  H23  H23  H  0  1  N  N  N   9.523  26.926   9.632    4.323  -1.517   1.681  H23  5YW  58  
5YW  H24  H24  H  0  1  N  N  N   6.627  29.724  10.656    7.300  -3.803   3.403  H24  5YW  59  
5YW  H25  H25  H  0  1  N  N  N   7.242  31.882  11.758    9.200  -4.648   2.041  H25  5YW  60  
5YW  H26  H26  H  0  1  N  N  N   9.638  32.266  12.351    9.271  -4.095  -0.381  H26  5YW  61  
5YW  H27  H27  H  0  1  N  N  N  12.527  29.354  11.557    6.289  -1.826  -2.116  H27  5YW  62  
5YW  H28  H28  H  0  1  N  N  N  14.270  27.710  10.898    4.512  -0.478  -3.148  H28  5YW  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5YW  C1   C2   SING  N  N   1  
5YW  C2   C3   SING  N  N   2  
5YW  C3   O1   SING  N  N   3  
5YW  O1   C4   SING  N  N   4  
5YW  C19  C18  SING  N  N   5  
5YW  C19  N2   SING  N  N   6  
5YW  C4   C5   DOUB  Y  N   7  
5YW  C4   C18  SING  Y  N   8  
5YW  C5   C6   SING  Y  N   9  
5YW  C18  C17  DOUB  Y  N  10  
5YW  N2   C20  SING  N  N  11  
5YW  C6   C7   DOUB  Y  N  12  
5YW  C17  C7   SING  Y  N  13  
5YW  C7   N1   SING  N  N  14  
5YW  O2   C8   DOUB  N  N  15  
5YW  C20  O3   DOUB  N  N  16  
5YW  C20  C21  SING  N  N  17  
5YW  C22  C23  DOUB  Y  N  18  
5YW  C22  C21  SING  Y  N  19  
5YW  C23  C24  SING  Y  N  20  
5YW  N1   C8   SING  N  N  21  
5YW  C21  C30  DOUB  Y  N  22  
5YW  C8   C9   SING  N  N  23  
5YW  N3   C26  DOUB  Y  N  24  
5YW  N3   C25  SING  Y  N  25  
5YW  C30  C29  SING  Y  N  26  
5YW  C24  C25  SING  N  N  27  
5YW  C24  C29  DOUB  Y  N  28  
5YW  C26  C27  SING  Y  N  29  
5YW  C25  N4   DOUB  Y  N  30  
5YW  C9   C10  TRIP  N  N  31  
5YW  C27  C28  DOUB  Y  N  32  
5YW  N4   C28  SING  Y  N  33  
5YW  C10  C11  SING  N  N  34  
5YW  C11  C16  DOUB  Y  N  35  
5YW  C11  C12  SING  Y  N  36  
5YW  C16  C15  SING  Y  N  37  
5YW  C12  C13  DOUB  Y  N  38  
5YW  C15  C14  DOUB  Y  N  39  
5YW  C13  C14  SING  Y  N  40  
5YW  C1   H1   SING  N  N  41  
5YW  C1   H2   SING  N  N  42  
5YW  C1   H3   SING  N  N  43  
5YW  C2   H4   SING  N  N  44  
5YW  C2   H5   SING  N  N  45  
5YW  C3   H6   SING  N  N  46  
5YW  C3   H7   SING  N  N  47  
5YW  C5   H8   SING  N  N  48  
5YW  C6   H9   SING  N  N  49  
5YW  N1   H10  SING  N  N  50  
5YW  C12  H13  SING  N  N  51  
5YW  C13  H14  SING  N  N  52  
5YW  C14  H15  SING  N  N  53  
5YW  C15  H16  SING  N  N  54  
5YW  C16  H17  SING  N  N  55  
5YW  C17  H18  SING  N  N  56  
5YW  C19  H19  SING  N  N  57  
5YW  C19  H20  SING  N  N  58  
5YW  N2   H21  SING  N  N  59  
5YW  C22  H22  SING  N  N  60  
5YW  C23  H23  SING  N  N  61  
5YW  C26  H24  SING  N  N  62  
5YW  C27  H25  SING  N  N  63  
5YW  C28  H26  SING  N  N  64  
5YW  C29  H27  SING  N  N  65  
5YW  C30  H28  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5YW  InChI             InChI                 1.03   "InChI=1S/C30H26N4O3/c1-2-19-37-27-15-14-26(34-28(35)16-9-22-7-4-3-5-8-22)20-25(27)21-33-30(36)24-12-10-23(11-13-24)29-31-17-6-18-32-29/h3-8,10-15,17-18,20H,2,19,21H2,1H3,(H,33,36)(H,34,35)"  
5YW  InChIKey          InChI                 1.03   LLWADQIEAQTMON-UHFFFAOYSA-N  
5YW  SMILES_CANONICAL  CACTVS                3.385  "CCCOc1ccc(NC(=O)C#Cc2ccccc2)cc1CNC(=O)c3ccc(cc3)c4ncccn4"  
5YW  SMILES            CACTVS                3.385  "CCCOc1ccc(NC(=O)C#Cc2ccccc2)cc1CNC(=O)c3ccc(cc3)c4ncccn4"  
5YW  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)c3ncccn3)NC(=O)C#Cc4ccccc4"  
5YW  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)c3ncccn3)NC(=O)C#Cc4ccccc4"  
#
_pdbx_chem_comp_identifier.comp_id          5YW
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5YW  "Create component"  2022-02-04  PDBJ  
5YW  "Initial release"   2022-04-13  RCSB  
##
