data_6CG
#

_chem_comp.id                                   6CG
_chem_comp.name                                 "5'-S-phosphono-5'-thioguanosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N5 O7 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "TrpGMPS hydrolysis product"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-03-10
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       379.286
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6CG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5IPE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6CG  C2     C1   C  0  1  N  N  N  -26.892  5.067  -32.854   4.939  -0.816  -1.048  C2     6CG   1  
6CG  C4     C2   C  0  1  Y  N  N  -28.767  5.218  -31.467   3.000   0.209  -0.148  C4     6CG   2  
6CG  C5     C3   C  0  1  Y  N  N  -29.634  4.877  -32.599   3.773   1.299   0.232  C5     6CG   3  
6CG  C6     C4   C  0  1  N  N  N  -28.973  4.640  -33.895   5.207   1.270  -0.074  C6     6CG   4  
6CG  N1     N1   N  0  1  N  N  N  -27.640  4.757  -33.931   5.707   0.197  -0.705  N1     6CG   5  
6CG  N2     N2   N  0  1  N  N  N  -25.550  5.160  -33.001   5.507  -1.887  -1.684  N2     6CG   6  
6CG  N3     N3   N  0  1  N  N  N  -27.429  5.310  -31.635   3.605  -0.841  -0.789  N3     6CG   7  
6CG  C8     C5   C  0  1  Y  N  N  -30.853  5.173  -30.823   1.739   1.709   0.848  C8     6CG   8  
6CG  "C1'"  C6   C  0  1  N  N  R  -29.145  5.760  -29.076   0.557  -0.377   0.060  "C1'"  6CG   9  
6CG  "C3'"  C7   C  0  1  N  N  S  -30.013  6.821  -27.130  -1.059  -1.746   1.209  "C3'"  6CG  10  
6CG  "C4'"  C8   C  0  1  N  N  S  -29.985  5.316  -26.932  -1.711  -0.544   0.499  "C4'"  6CG  11  
6CG  "C5'"  C9   C  0  1  N  N  N  -31.394  4.766  -26.740  -2.733   0.117   1.426  "C5'"  6CG  12  
6CG  O6     O1   O  0  1  N  N  N  -29.644  4.352  -34.921   5.930   2.203   0.238  O6     6CG  13  
6CG  N7     N4   N  0  1  Y  N  N  -30.901  4.865  -32.140   2.951   2.188   0.837  N7     6CG  14  
6CG  N9     N5   N  0  1  Y  N  N  -29.579  5.384  -30.433   1.727   0.485   0.247  N9     6CG  15  
6CG  "O4'"  O2   O  0  1  N  N  N  -29.441  4.741  -28.130  -0.662   0.388   0.185  "O4'"  6CG  16  
6CG  "C2'"  C10  C  0  1  N  N  R  -29.975  6.959  -28.646   0.453  -1.412   1.209  "C2'"  6CG  17  
6CG  "O2'"  O3   O  0  1  N  N  N  -29.415  8.201  -29.092   1.231  -2.575   0.919  "O2'"  6CG  18  
6CG  "O3'"  O4   O  0  1  N  N  N  -28.878  7.420  -26.479  -1.306  -2.951   0.481  "O3'"  6CG  19  
6CG  "S5'"  S1   S  0  1  N  N  N  -32.201  5.463  -25.329  -3.598   1.436   0.531  "S5'"  6CG  20  
6CG  P      P1   P  0  1  N  N  N  -31.935  4.152  -23.767  -4.921   0.366  -0.734  P      6CG  21  
6CG  O1P    O5   O  0  1  N  N  N  -32.665  2.850  -24.055  -4.141  -0.515  -1.632  O1P    6CG  22  
6CG  O2P    O6   O  0  1  N  N  N  -32.493  4.904  -22.580  -5.915  -0.528   0.164  O2P    6CG  23  
6CG  O3P    O7   O  0  1  N  Y  N  -30.445  3.942  -23.661  -5.781   1.405  -1.614  O3P    6CG  24  
6CG  H1     H1   H  0  1  N  N  N  -25.133  5.000  -33.896   4.958  -2.644  -1.941  H1     6CG  25  
6CG  H2     H2   H  0  1  N  N  N  -24.976  5.389  -32.215   6.457  -1.888  -1.878  H2     6CG  26  
6CG  H3     H3   H  0  1  N  N  N  -26.840  5.556  -30.865   3.078  -1.608  -1.059  H3     6CG  27  
6CG  H4     H4   H  0  1  N  N  N  -31.714  5.240  -30.175   0.877   2.206   1.268  H4     6CG  28  
6CG  H5     H5   H  0  1  N  N  N  -28.076  6.019  -29.068   0.598  -0.878  -0.906  H5     6CG  29  
6CG  H6     H6   H  0  1  N  N  N  -30.956  7.233  -26.740  -1.432  -1.834   2.229  H6     6CG  30  
6CG  H7     H7   H  0  1  N  N  N  -29.366  5.066  -26.058  -2.201  -0.875  -0.417  H7     6CG  31  
6CG  H8     H8   H  0  1  N  N  N  -31.988  4.996  -27.637  -3.454  -0.628   1.762  H8     6CG  32  
6CG  H9     H9   H  0  1  N  N  N  -31.333  3.675  -26.610  -2.219   0.540   2.289  H9     6CG  33  
6CG  H10    H10  H  0  1  N  N  N  -30.996  6.843  -29.038   0.754  -0.971   2.159  H10    6CG  34  
6CG  H11    H11  H  0  1  N  N  N  -29.965  8.919  -28.801   1.198  -3.252   1.609  H11    6CG  35  
6CG  H12    H12  H  0  1  N  N  N  -28.954  7.304  -25.539  -0.918  -3.740   0.883  H12    6CG  36  
6CG  H13    H13  H  0  1  N  N  N  -33.222  4.419  -22.211  -6.459  -0.016   0.778  H13    6CG  37  
6CG  H14    H14  H  0  1  N  Y  N  -30.244  3.023  -23.796  -6.409   0.984  -2.217  H14    6CG  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6CG  O6     C6     DOUB  N  N   1  
6CG  N1     C6     SING  N  N   2  
6CG  N1     C2     DOUB  N  N   3  
6CG  C6     C5     SING  N  N   4  
6CG  N2     C2     SING  N  N   5  
6CG  C2     N3     SING  N  N   6  
6CG  C5     N7     SING  Y  N   7  
6CG  C5     C4     DOUB  Y  N   8  
6CG  N7     C8     DOUB  Y  N   9  
6CG  N3     C4     SING  N  N  10  
6CG  C4     N9     SING  Y  N  11  
6CG  C8     N9     SING  Y  N  12  
6CG  N9     "C1'"  SING  N  N  13  
6CG  "O2'"  "C2'"  SING  N  N  14  
6CG  "C1'"  "C2'"  SING  N  N  15  
6CG  "C1'"  "O4'"  SING  N  N  16  
6CG  "C2'"  "C3'"  SING  N  N  17  
6CG  "O4'"  "C4'"  SING  N  N  18  
6CG  "C3'"  "C4'"  SING  N  N  19  
6CG  "C3'"  "O3'"  SING  N  N  20  
6CG  "C4'"  "C5'"  SING  N  N  21  
6CG  "C5'"  "S5'"  SING  N  N  22  
6CG  "S5'"  P      SING  N  N  23  
6CG  O1P    P      DOUB  N  N  24  
6CG  P      O3P    SING  N  N  25  
6CG  P      O2P    SING  N  N  26  
6CG  N2     H1     SING  N  N  27  
6CG  N2     H2     SING  N  N  28  
6CG  N3     H3     SING  N  N  29  
6CG  C8     H4     SING  N  N  30  
6CG  "C1'"  H5     SING  N  N  31  
6CG  "C3'"  H6     SING  N  N  32  
6CG  "C4'"  H7     SING  N  N  33  
6CG  "C5'"  H8     SING  N  N  34  
6CG  "C5'"  H9     SING  N  N  35  
6CG  "C2'"  H10    SING  N  N  36  
6CG  "O2'"  H11    SING  N  N  37  
6CG  "O3'"  H12    SING  N  N  38  
6CG  O2P    H13    SING  N  N  39  
6CG  O3P    H14    SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6CG  SMILES            ACDLabs               12.01  "C=2(Nc1n(cnc1C(N=2)=O)C3C(C(C(CSP(O)(O)=O)O3)O)O)N"  
6CG  InChI             InChI                 1.03   "InChI=1S/C10H14N5O7PS/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(22-9)1-24-23(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1"  
6CG  InChIKey          InChI                 1.03   GPKODAQOVIGWBY-UUOKFMHZSA-N  
6CG  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)c2ncn([C@@H]3O[C@H](CS[P](O)(O)=O)[C@@H](O)[C@H]3O)c2N1"  
6CG  SMILES            CACTVS                3.385  "NC1=NC(=O)c2ncn([CH]3O[CH](CS[P](O)(O)=O)[CH](O)[CH]3O)c2N1"  
6CG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CSP(=O)(O)O)O)O)NC(=NC2=O)N"  
6CG  SMILES            "OpenEye OEToolkits"  2.0.4  "c1nc2c(n1C3C(C(C(O3)CSP(=O)(O)O)O)O)NC(=NC2=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6CG  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-S-phosphono-5'-thioguanosine"  
6CG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "[(2~{S},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylphosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6CG  "Create component"          2016-03-10  RCSB  
6CG  "Modify leaving atom flag"  2016-03-10  RCSB  
6CG  "Initial release"           2017-03-15  RCSB  
6CG  "Modify synonyms"           2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6CG
_pdbx_chem_comp_synonyms.name        "TrpGMPS hydrolysis product"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
