data_6CN
# 
_chem_comp.id                                    6CN 
_chem_comp.name                                  
;6-cyanouridine 5'-phosphate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-23 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        349.191 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6CN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EX1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6CN O3P    O3P    O 0 1 N N N 26.124 -10.312 12.834 -4.292 1.893  0.837  O1  6CN 1  
6CN P      P      P 0 1 N N N 25.210 -10.780 13.921 -4.432 0.940  -0.286 P1  6CN 2  
6CN O1P    O1P    O 0 1 N N N 25.766 -11.613 15.041 -5.597 -0.119 0.051  O2  6CN 3  
6CN O2P    O2P    O 0 1 N N N 23.895 -11.328 13.430 -4.811 1.744  -1.629 O3  6CN 4  
6CN "O5'"  "O5'"  O 0 1 N N N 24.853 -9.424  14.716 -3.042 0.157  -0.503 O4  6CN 5  
6CN "C5'"  "C5'"  C 0 1 N N N 24.044 -8.359  14.163 -2.385 -0.565 0.539  C1  6CN 6  
6CN "C4'"  "C4'"  C 0 1 N N R 24.127 -7.189  15.140 -1.096 -1.185 -0.004 C2  6CN 7  
6CN "C3'"  "C3'"  C 0 1 N N S 23.347 -7.486  16.415 -0.432 -2.074 1.071  C3  6CN 8  
6CN "O3'"  "O3'"  O 0 1 N N N 23.988 -6.836  17.572 -0.756 -3.448 0.854  O5  6CN 9  
6CN "C2'"  "C2'"  C 0 1 N N R 21.966 -6.952  16.123 1.082  -1.837 0.872  C4  6CN 10 
6CN "O2'"  "O2'"  O 0 1 N N N 21.341 -6.512  17.332 1.739  -3.058 0.525  O6  6CN 11 
6CN "O4'"  "O4'"  O 0 1 N N N 23.526 -6.057  14.505 -0.122 -0.156 -0.284 O7  6CN 12 
6CN "C1'"  "C1'"  C 0 1 N N R 22.259 -5.801  15.160 1.154  -0.833 -0.300 C5  6CN 13 
6CN N1     N1     N 0 1 N N N 21.224 -5.467  14.133 2.242  0.124  -0.086 N1  6CN 14 
6CN C6     C6     C 0 1 N N N 20.662 -4.271  14.131 3.287  0.184  -0.983 C6  6CN 15 
6CN C5     C5     C 0 1 N N N 19.583 -4.104  13.317 4.295  1.077  -0.777 C7  6CN 16 
6CN C4     C4     C 0 1 N N N 19.450 -4.867  12.204 4.241  1.923  0.360  C8  6CN 17 
6CN O4     O4     O 0 1 N N N 18.612 -4.531  11.348 5.128  2.730  0.567  O8  6CN 18 
6CN N3     N3     N 0 1 N N N 19.992 -6.044  12.218 3.198  1.827  1.208  N2  6CN 19 
6CN C2     C2     C 0 1 N N N 20.874 -6.397  13.162 2.211  0.942  0.982  C9  6CN 20 
6CN O2     O2     O 0 1 N N N 21.361 -7.529  13.140 1.280  0.873  1.761  O9  6CN 21 
6CN C7     C7     C 0 1 N N N 21.639 -3.314  13.880 3.313  -0.684 -2.121 C10 6CN 22 
6CN N8     N8     N 0 1 N N N 22.433 -2.537  13.677 3.334  -1.374 -3.024 N3  6CN 23 
6CN HO1P   HO1P   H 0 0 N N N 25.883 -12.507 14.743 -5.745 -0.776 -0.643 H1  6CN 24 
6CN HO2P   HO2P   H 0 0 N N N 23.305 -11.443 14.166 -5.639 2.240  -1.570 H2  6CN 25 
6CN "H5'"  "H5'"  H 0 1 N N N 24.426 -8.061  13.175 -2.144 0.115  1.357  H3  6CN 26 
6CN "H5'A" "H5'A" H 0 0 N N N 23.002 -8.686  14.028 -3.042 -1.354 0.905  H4  6CN 27 
6CN "H4'"  "H4'"  H 0 1 N N N 25.179 -7.008  15.404 -1.304 -1.767 -0.901 H5  6CN 28 
6CN "H3'"  "H3'"  H 0 1 N N N 23.313 -8.553  16.679 -0.741 -1.762 2.069  H6  6CN 29 
6CN "HO3'" "HO3'" H 0 0 N N N 24.126 -7.477  18.260 -0.365 -4.052 1.501  H7  6CN 30 
6CN "H2'"  "H2'"  H 0 1 N N N 21.268 -7.688  15.697 1.523  -1.409 1.772  H8  6CN 31 
6CN "HO2'" "HO2'" H 0 0 N N N 21.998 -6.414  18.011 1.673  -3.746 1.202  H9  6CN 32 
6CN "H1'"  "H1'"  H 0 1 N N N 22.271 -4.909  15.803 1.291  -1.360 -1.244 H10 6CN 33 
6CN H5     H5     H 0 1 N N N 18.834 -3.364  13.558 5.123  1.139  -1.468 H11 6CN 34 
6CN HN3    HN3    H 0 1 N N N 19.746 -6.704  11.508 3.157  2.404  1.987  H12 6CN 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6CN O3P   P      DOUB N N 1  
6CN P     "O5'"  SING N N 2  
6CN P     O1P    SING N N 3  
6CN O1P   HO1P   SING N N 4  
6CN O2P   P      SING N N 5  
6CN O2P   HO2P   SING N N 6  
6CN "C5'" "O5'"  SING N N 7  
6CN "C5'" "C4'"  SING N N 8  
6CN "C5'" "H5'"  SING N N 9  
6CN "C5'" "H5'A" SING N N 10 
6CN "C4'" "C3'"  SING N N 11 
6CN "C4'" "H4'"  SING N N 12 
6CN "C3'" "O3'"  SING N N 13 
6CN "C3'" "H3'"  SING N N 14 
6CN "O3'" "HO3'" SING N N 15 
6CN "C2'" "C3'"  SING N N 16 
6CN "C2'" "O2'"  SING N N 17 
6CN "C2'" "H2'"  SING N N 18 
6CN "O2'" "HO2'" SING N N 19 
6CN "O4'" "C4'"  SING N N 20 
6CN "O4'" "C1'"  SING N N 21 
6CN "C1'" "C2'"  SING N N 22 
6CN "C1'" "H1'"  SING N N 23 
6CN N1    "C1'"  SING N N 24 
6CN C6    N1     SING N N 25 
6CN C5    C6     DOUB N N 26 
6CN C5    H5     SING N N 27 
6CN C4    C5     SING N N 28 
6CN C4    N3     SING N N 29 
6CN O4    C4     DOUB N N 30 
6CN N3    C2     SING N N 31 
6CN N3    HN3    SING N N 32 
6CN C2    N1     SING N N 33 
6CN O2    C2     DOUB N N 34 
6CN C7    C6     SING N N 35 
6CN N8    C7     TRIP N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6CN SMILES           ACDLabs              10.04 "N#CC=1N(C(=O)NC(=O)C=1)C2OC(C(O)C2O)COP(=O)(O)O"                                                                                                        
6CN SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2C#N"                                                                                      
6CN SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2C#N"                                                                                             
6CN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C#N"                                                                                     
6CN SMILES           "OpenEye OEToolkits" 1.5.0 "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C#N"                                                                                                       
6CN InChI            InChI                1.03  "InChI=1S/C10H12N3O9P/c11-2-4-1-6(14)12-10(17)13(4)9-8(16)7(15)5(22-9)3-21-23(18,19)20/h1,5,7-9,15-16H,3H2,(H,12,14,17)(H2,18,19,20)/t5-,7-,8-,9-/m1/s1" 
6CN InChIKey         InChI                1.03  GCVKNFUDFHDSJQ-ZOQUXTDFSA-N                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6CN "SYSTEMATIC NAME" ACDLabs              10.04 
;6-cyanouridine 5'-(dihydrogen phosphate)
;
6CN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-cyano-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6CN "Create component"  2008-10-23 RCSB 
6CN "Modify descriptor" 2011-06-04 RCSB 
# 
