data_780
#

_chem_comp.id                                   780
_chem_comp.name                                 "3-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H16 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CRA_7806
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-03-14
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       328.367
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    780
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O39
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
780  C1      C1      C   0  1  Y  N  N  44.274  -3.025  25.901   4.759   0.493  -0.071  C1      780   1  
780  C2      C2      C   0  1  Y  N  N  44.705  -1.671  25.998   4.966  -0.750  -0.682  C2      780   2  
780  C3      C3      C   0  1  Y  N  N  44.655  -0.929  27.186   3.926  -1.616  -0.861  C3      780   3  
780  C4      C4      C   0  1  Y  N  N  44.165  -1.568  28.282   2.648  -1.270  -0.436  C4      780   4  
780  C5      C5      C   0  1  Y  N  N  43.743  -2.833  28.254   2.422  -0.025   0.181  C5      780   5  
780  C6      C6      C   0  1  Y  N  N  43.771  -3.616  27.095   3.489   0.854   0.366  C6      780   6  
780  C7      C7      C   0  1  N  N  N  44.349  -3.730  24.664   5.894   1.420   0.115  C7      780   7  
780  N1      N1      N   0  1  N  N  N  44.034  -5.009  24.582   5.699   2.603   0.697  N1      780   8  
780  N2      N2      N   1  1  N  N  N  44.739  -3.074  23.599   7.112   1.074  -0.298  N2      780   9  
780  N3      N3      N   0  1  Y  N  N  43.995  -1.136  29.488   1.426  -1.909  -0.473  N3      780  10  
780  N4      N4      N   0  1  Y  N  N  43.295  -3.238  29.433   1.101   0.037   0.485  N4      780  11  
780  C8      C8      C   0  1  Y  N  N  43.487  -2.131  30.134   0.511  -1.069   0.102  C8      780  12  
780  "C1'"   "C1'"   C   0  1  Y  N  N  43.251  -2.068  31.533  -0.928  -1.364   0.267  "C1'"   780  13  
780  "C2'"   "C2'"   C   0  1  Y  N  N  42.899  -3.218  32.242  -1.342  -2.646   0.636  "C2'"   780  14  
780  "C3'"   "C3'"   C   0  1  Y  N  N  42.665  -3.181  33.607  -2.685  -2.923   0.789  "C3'"   780  15  
780  "C4'"   "C4'"   C   0  1  Y  N  N  42.771  -2.006  34.310  -3.631  -1.937   0.580  "C4'"   780  16  
780  "C5'"   "C5'"   C   0  1  Y  N  N  43.118  -0.812  33.687  -3.236  -0.653   0.213  "C5'"   780  17  
780  "C6'"   "C6'"   C   0  1  Y  N  N  43.356  -0.854  32.284  -1.879  -0.360   0.059  "C6'"   780  18  
780  "O6'"   "O6'"   O  -1  1  N  N  N  43.696   0.317  31.622  -1.486   0.889  -0.299  "O6'"   780  19  
780  C1B     "C1''"  C   0  1  Y  N  N  43.217   0.359  34.467  -4.255   0.403  -0.011  C1B     780  20  
780  C2B     "C2''"  C   0  1  Y  N  N  44.394   1.126  34.549  -5.349   0.155  -0.838  C2B     780  21  
780  C3B     "C3''"  C   0  1  Y  N  N  44.471   2.286  35.331  -6.293   1.141  -1.042  C3B     780  22  
780  C4B     "C4''"  C   0  1  Y  N  N  43.365   2.709  36.056  -6.155   2.373  -0.428  C4B     780  23  
780  C5B     "C5''"  C   0  1  Y  N  N  42.191   1.969  35.993  -5.070   2.624   0.393  C5B     780  24  
780  C6B     "C6''"  C   0  1  Y  N  N  42.123   0.819  35.214  -4.123   1.643   0.610  C6B     780  25  
780  HC2     HC2     H   0  1  N  N  N  45.100  -1.172  25.134   5.956  -1.025  -1.015  HC2     780  26  
780  HC3     HC3     H   0  1  N  N  N  44.984   0.094  27.242   4.096  -2.572  -1.333  HC3     780  27  
780  HC6     HC6     H   0  1  N  N  N  43.421  -4.639  27.110   3.330   1.810   0.843  HC6     780  28  
780  HH11    HH11    H   0  0  N  N  N  43.769  -5.482  25.435   4.812   2.855   0.997  HH11    780  29  
780  HH12    HH12    H   0  0  N  N  N  44.051  -5.570  23.762   6.445   3.212   0.819  HH12    780  30  
780  HH21    HH21    H   0  0  N  N  N  44.963  -2.092  23.670   7.857   1.683  -0.175  HH21    780  31  
780  HH22    HH22    H   0  0  N  N  N  44.846  -3.499  22.706   7.255   0.211  -0.717  HH22    780  32  
780  HN3     HN3     H   0  1  N  N  N  44.175  -0.255  29.903   1.249  -2.790  -0.838  HN3     780  33  
780  "HC2'"  "HC2'"  H   0  0  N  N  N  42.806  -4.162  31.724  -0.609  -3.422   0.801  "HC2'"  780  34  
780  "HC3'"  "HC3'"  H   0  0  N  N  N  42.394  -4.087  34.128  -2.999  -3.916   1.075  "HC3'"  780  35  
780  "HC4'"  "HC4'"  H   0  0  N  N  N  42.578  -2.020  35.374  -4.680  -2.163   0.703  "HC4'"  780  36  
780  H2B     "H2''"  H   0  1  N  N  N  45.265   0.811  33.993  -5.457  -0.806  -1.318  H2B     780  37  
780  H3B     "H3''"  H   0  1  N  N  N  45.387   2.854  35.377  -7.141   0.950  -1.682  H3B     780  38  
780  H4B     "H4''"  H   0  1  N  N  N  43.415   3.602  36.662  -6.896   3.141  -0.591  H4B     780  39  
780  H5B     "H5''"  H   0  1  N  N  N  41.321   2.285  36.551  -4.967   3.588   0.869  H5B     780  40  
780  H6B     "H6''"  H   0  1  N  N  N  41.195   0.264  35.189  -3.277   1.841   1.252  H6B     780  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
780  C1     C2      DOUB  Y  N   1  
780  C1     C6      SING  Y  N   2  
780  C1     C7      SING  N  N   3  
780  C2     C3      SING  Y  N   4  
780  C2     HC2     SING  N  N   5  
780  C3     C4      DOUB  Y  N   6  
780  C3     HC3     SING  N  N   7  
780  C4     C5      SING  Y  N   8  
780  C4     N3      SING  Y  N   9  
780  C5     C6      DOUB  Y  N  10  
780  C5     N4      SING  Y  N  11  
780  C6     HC6     SING  N  N  12  
780  C7     N1      SING  N  N  13  
780  C7     N2      DOUB  N  N  14  
780  N1     HH11    SING  N  N  15  
780  N1     HH12    SING  N  N  16  
780  N2     HH21    SING  N  N  17  
780  N2     HH22    SING  N  N  18  
780  N3     C8      SING  Y  N  19  
780  N3     HN3     SING  N  N  20  
780  N4     C8      DOUB  Y  N  21  
780  C8     "C1'"   SING  Y  N  22  
780  "C1'"  "C2'"   DOUB  Y  N  23  
780  "C1'"  "C6'"   SING  Y  N  24  
780  "C2'"  "C3'"   SING  Y  N  25  
780  "C2'"  "HC2'"  SING  N  N  26  
780  "C3'"  "C4'"   DOUB  Y  N  27  
780  "C3'"  "HC3'"  SING  N  N  28  
780  "C4'"  "C5'"   SING  Y  N  29  
780  "C4'"  "HC4'"  SING  N  N  30  
780  "C5'"  "C6'"   DOUB  Y  N  31  
780  "C5'"  C1B     SING  Y  N  32  
780  "C6'"  "O6'"   SING  N  N  33  
780  C1B    C2B     DOUB  Y  N  34  
780  C1B    C6B     SING  Y  N  35  
780  C2B    C3B     SING  Y  N  36  
780  C2B    H2B     SING  N  N  37  
780  C3B    C4B     DOUB  Y  N  38  
780  C3B    H3B     SING  N  N  39  
780  C4B    C5B     SING  Y  N  40  
780  C4B    H4B     SING  N  N  41  
780  C5B    C6B     DOUB  Y  N  42  
780  C5B    H5B     SING  N  N  43  
780  C6B    H6B     SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
780  SMILES            ACDLabs               10.04  "[O-]c4c(c1ccccc1)cccc4c3nc2cc(ccc2n3)\C(=[NH2+])N"  
780  SMILES_CANONICAL  CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(c3[O-])c4ccccc4"  
780  SMILES            CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(c3[O-])c4ccccc4"  
780  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)c2cccc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N"  
780  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)c2cccc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N"  
780  InChI             InChI                 1.03   "InChI=1S/C20H16N4O/c21-19(22)13-9-10-16-17(11-13)24-20(23-16)15-8-4-7-14(18(15)25)12-5-2-1-3-6-12/h1-11,25H,(H3,21,22)(H,23,24)"  
780  InChIKey          InChI                 1.03   LMGQGPVCSYOMNS-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
780  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}biphenyl-2-olate"  
780  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-6-phenyl-phenolate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
780  "Create component"      2003-03-14  RCSB  
780  "Modify aromatic_flag"  2011-06-04  RCSB  
780  "Modify descriptor"     2011-06-04  RCSB  
780  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     780
_pdbx_chem_comp_synonyms.name        CRA_7806
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
