data_9SJ
#

_chem_comp.id                                   9SJ
_chem_comp.name                                 "5-acetamido-2,6-anhydro-3,5,7-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H18 F N O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-(acetylamino)-2,6-anhydro-3,5,7-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       295.262
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9SJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W2U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9SJ
_pdbx_chem_comp_synonyms.name        "5-(acetylamino)-2,6-anhydro-3,5,7-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9SJ  O10  O10  O  0  1  N  N  N  27.241  14.593  62.752  -2.267   2.892  -1.073  O10  9SJ   1  
9SJ  C10  C10  C  0  1  N  N  N  26.927  14.916  61.616  -1.546   3.202  -0.149  C10  9SJ   2  
9SJ  C11  C11  C  0  1  N  N  N  27.442  14.152  60.425  -1.515   4.628   0.338  C11  9SJ   3  
9SJ  N5   N5   N  0  1  N  N  N  26.114  15.955  61.370  -0.776   2.270   0.447  N5   9SJ   4  
9SJ  C5   C5   C  0  1  N  N  R  25.512  16.793  62.423  -0.810   0.882  -0.023  C5   9SJ   5  
9SJ  C4   C4   C  0  1  N  N  R  24.040  16.767  62.117  -1.968   0.142   0.654  C4   9SJ   6  
9SJ  O4   O4   O  0  1  N  N  N  23.513  15.526  62.571  -3.208   0.738   0.267  O4   9SJ   7  
9SJ  C3   C3   C  0  1  N  N  R  23.274  17.865  62.852  -1.946  -1.326   0.215  C3   9SJ   8  
9SJ  F1   F1   F  0  1  N  N  N  23.508  17.692  64.154  -2.154  -1.404  -1.166  F1   9SJ   9  
9SJ  C6   C6   C  0  1  N  N  S  25.973  18.217  62.178   0.508   0.189   0.333  C6   9SJ  10  
9SJ  O6   O6   O  0  1  N  N  N  25.236  19.101  63.036   0.449  -1.180  -0.074  O6   9SJ  11  
9SJ  C2   C2   C  0  1  N  N  R  23.845  19.257  62.753  -0.585  -1.934   0.563  C2   9SJ  12  
9SJ  C1   C1   C  0  1  N  N  N  23.451  19.961  64.032  -0.535  -3.361   0.082  C1   9SJ  13  
9SJ  O1A  O1A  O  0  1  N  N  N  24.290  20.784  64.388   0.242  -3.678  -0.789  O1A  9SJ  14  
9SJ  O1B  O1B  O  0  1  N  N  N  22.368  19.752  64.678  -1.352  -4.280   0.619  O1B  9SJ  15  
9SJ  C7   C7   C  0  1  N  N  N  27.465  18.380  62.443   1.663   0.887  -0.388  C7   9SJ  16  
9SJ  C8   C8   C  0  1  N  N  S  27.784  19.869  62.288   2.990   0.275   0.064  C8   9SJ  17  
9SJ  O8   O8   O  0  1  N  N  N  27.667  20.216  60.901   3.192   0.547   1.452  O8   9SJ  18  
9SJ  C9   C9   C  0  1  N  N  N  29.165  20.252  62.846   4.135   0.886  -0.747  C9   9SJ  19  
9SJ  O9   O9   O  0  1  N  N  N  30.174  19.719  61.978   5.360   0.232  -0.409  O9   9SJ  20  
9SJ  H1   H1   H  0  1  N  N  N  28.090  13.332  60.767  -2.201   5.230  -0.257  H1   9SJ  21  
9SJ  H2   H2   H  0  1  N  N  N  26.594  13.738  59.860  -1.817   4.661   1.385  H2   9SJ  22  
9SJ  H3   H3   H  0  1  N  N  N  28.018  14.829  59.777  -0.504   5.024   0.239  H3   9SJ  23  
9SJ  H4   H4   H  0  1  N  N  N  25.904  16.174  60.417  -0.199   2.517   1.186  H4   9SJ  24  
9SJ  H5   H5   H  0  1  N  N  N  25.742  16.444  63.440  -0.950   0.867  -1.104  H5   9SJ  25  
9SJ  H6   H6   H  0  1  N  N  N  23.887  16.882  61.034  -1.857   0.202   1.736  H6   9SJ  26  
9SJ  H7   H7   H  0  1  N  N  N  22.582  15.490  62.386  -3.985   0.318   0.659  H7   9SJ  27  
9SJ  H8   H8   H  0  1  N  N  N  22.208  17.851  62.580  -2.734  -1.873   0.733  H8   9SJ  28  
9SJ  H9   H9   H  0  1  N  N  N  25.776  18.473  61.126   0.667   0.242   1.410  H9   9SJ  29  
9SJ  H10  H10  H  0  1  N  N  N  23.591  19.798  61.830  -0.442  -1.910   1.643  H10  9SJ  30  
9SJ  H11  H11  H  0  1  N  N  N  22.338  20.320  65.439  -1.283  -5.183   0.278  H11  9SJ  31  
9SJ  H12  H12  H  0  1  N  N  N  27.707  18.045  63.463   1.550   0.758  -1.464  H12  9SJ  32  
9SJ  H13  H13  H  0  1  N  N  N  28.045  17.791  61.717   1.652   1.950  -0.147  H13  9SJ  33  
9SJ  H14  H14  H  0  1  N  N  N  27.030  20.431  62.858   2.966  -0.803  -0.096  H14  9SJ  34  
9SJ  H15  H15  H  0  1  N  N  N  27.862  21.139  60.787   3.224   1.489   1.668  H15  9SJ  35  
9SJ  H16  H16  H  0  1  N  N  N  29.286  19.833  63.856   3.936   0.756  -1.811  H16  9SJ  36  
9SJ  H17  H17  H  0  1  N  N  N  29.256  21.347  62.891   4.215   1.949  -0.519  H17  9SJ  37  
9SJ  H18  H18  H  0  1  N  N  N  31.033  19.949  62.312   6.130   0.569  -0.886  H18  9SJ  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9SJ  C11  C10  SING  N  N   1  
9SJ  O8   C8   SING  N  N   2  
9SJ  N5   C10  SING  N  N   3  
9SJ  N5   C5   SING  N  N   4  
9SJ  C10  O10  DOUB  N  N   5  
9SJ  O9   C9   SING  N  N   6  
9SJ  C4   C5   SING  N  N   7  
9SJ  C4   O4   SING  N  N   8  
9SJ  C4   C3   SING  N  N   9  
9SJ  C6   C5   SING  N  N  10  
9SJ  C6   C7   SING  N  N  11  
9SJ  C6   O6   SING  N  N  12  
9SJ  C8   C7   SING  N  N  13  
9SJ  C8   C9   SING  N  N  14  
9SJ  C2   C3   SING  N  N  15  
9SJ  C2   O6   SING  N  N  16  
9SJ  C2   C1   SING  N  N  17  
9SJ  C3   F1   SING  N  N  18  
9SJ  C1   O1A  DOUB  N  N  19  
9SJ  C1   O1B  SING  N  N  20  
9SJ  C11  H1   SING  N  N  21  
9SJ  C11  H2   SING  N  N  22  
9SJ  C11  H3   SING  N  N  23  
9SJ  N5   H4   SING  N  N  24  
9SJ  C5   H5   SING  N  N  25  
9SJ  C4   H6   SING  N  N  26  
9SJ  O4   H7   SING  N  N  27  
9SJ  C3   H8   SING  N  N  28  
9SJ  C6   H9   SING  N  N  29  
9SJ  C2   H10  SING  N  N  30  
9SJ  O1B  H11  SING  N  N  31  
9SJ  C7   H12  SING  N  N  32  
9SJ  C7   H13  SING  N  N  33  
9SJ  C8   H14  SING  N  N  34  
9SJ  O8   H15  SING  N  N  35  
9SJ  C9   H16  SING  N  N  36  
9SJ  C9   H17  SING  N  N  37  
9SJ  O9   H18  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9SJ  SMILES            ACDLabs               12.01  "O=C(C)NC1C(O)C(F)C(OC1CC(CO)O)C(=O)O"  
9SJ  InChI             InChI                 1.03   "InChI=1S/C11H18FNO7/c1-4(15)13-8-6(2-5(16)3-14)20-10(11(18)19)7(12)9(8)17/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7+,8-,9-,10-/m0/s1"  
9SJ  InChIKey          InChI                 1.03   BLSXDTLZOKHJGS-FOVGZEBNSA-N  
9SJ  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@H](O[C@H]1C[C@H](O)CO)C(O)=O"  
9SJ  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](F)[CH](O[CH]1C[CH](O)CO)C(O)=O"  
9SJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@H]1[C@@H](O[C@@H]([C@@H]([C@@H]1O)F)C(=O)O)C[C@@H](CO)O"  
9SJ  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(OC(C(C1O)F)C(=O)O)CC(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9SJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(acetylamino)-2,6-anhydro-3,5,7-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid"  
9SJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;(2~{R},3~{R},4~{R},5~{R},6~{S})-5-acetamido-6-[(2~{S})-2,3-bis(oxidanyl)propyl]-3-fluoranyl-4-oxidanyl-oxane-2-carboxyl
ic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9SJ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9SJ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9SJ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9SJ  "Create component"      2017-06-07  RCSB  
9SJ  "Initial release"       2018-02-21  RCSB  
9SJ  "Other modification"    2020-07-03  RCSB  
9SJ  "Modify name"           2020-07-17  RCSB  
9SJ  "Modify synonyms"       2020-07-17  RCSB  
9SJ  "Modify internal type"  2020-07-17  RCSB  
9SJ  "Modify linking type"   2020-07-17  RCSB  
##
