data_9T1
#

_chem_comp.id                                   9T1
_chem_comp.name                                 "5-acetamido-2,6-anhydro-3,5,9-trideoxy-3-fluoro-D-erythro-L-gluco-non-4-ulosonic acid"
_chem_comp.type                                 L-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H16 F N O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-(acetylamino)-2,6-anhydro-3,5,9-trideoxy-3-fluoro-D-erythro-L-gluco-non-4-ulosonic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       293.246
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9T1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W2Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9T1
_pdbx_chem_comp_synonyms.name        "5-(acetylamino)-2,6-anhydro-3,5,9-trideoxy-3-fluoro-D-erythro-L-gluco-non-4-ulosonic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9T1  O10   O10  O  0  1  N  N  N  27.634  14.770  62.983   3.244  -1.640   1.073  O10   9T1   1  
9T1  C10   C10  C  0  1  N  N  N  27.171  14.940  61.870   3.400  -1.012   0.048  C10   9T1   2  
9T1  C11   C11  C  0  1  N  N  N  27.618  14.142  60.688   4.769  -0.913  -0.575  C11   9T1   3  
9T1  N5    N5   N  0  1  N  N  N  26.234  15.844  61.615   2.349  -0.406  -0.538  N5    9T1   4  
9T1  C5    C5   C  0  1  N  N  S  25.690  16.698  62.663   1.017  -0.507   0.064  C5    9T1   5  
9T1  C4    C4   C  0  1  N  N  N  24.205  16.523  62.761   0.344  -1.785  -0.393  C4    9T1   6  
9T1  O4    O4   O  0  1  N  N  N  23.739  15.397  62.889   0.965  -2.649  -0.964  O4    9T1   7  
9T1  C3    C3   C  0  1  N  N  S  23.251  17.679  62.673  -1.135  -1.941  -0.106  C3    9T1   8  
9T1  F1    F1   F  0  1  N  N  N  22.405  17.599  63.738  -1.332  -2.141   1.265  F1    9T1   9  
9T1  C6    C6   C  0  1  N  N  R  26.059  18.096  62.207   0.152   0.675  -0.391  C6    9T1  10  
9T1  C7    C7   C  0  1  N  N  R  27.533  18.395  62.477   0.695   1.970   0.217  C7    9T1  11  
9T1  O7    O7   O  0  1  N  N  N  27.953  17.772  63.702   0.770   1.834   1.637  O7    9T1  12  
9T1  C8    C8   C  0  1  N  N  R  27.766  19.907  62.521  -0.239   3.130  -0.135  C8    9T1  13  
9T1  O8    O8   O  0  1  N  N  N  27.926  20.431  61.192  -0.315   3.266  -1.556  O8    9T1  14  
9T1  C9    C9   C  0  1  N  N  N  28.994  20.261  63.372   0.303   4.424   0.473  C9    9T1  15  
9T1  O6    O6   O  0  1  N  N  N  25.268  19.099  62.841  -1.194   0.471   0.045  O6    9T1  16  
9T1  C2    C2   C  0  1  N  N  R  23.848  19.094  62.662  -1.844  -0.655  -0.549  C2    9T1  17  
9T1  C1    C1   C  0  1  N  N  N  23.334  19.900  63.848  -3.284  -0.696  -0.105  C1    9T1  18  
9T1  O1B   O1B  O  0  1  N  N  N  22.294  19.556  64.463  -4.117  -1.616  -0.615  O1B   9T1  19  
9T1  O1A   O1A  O  0  1  N  N  N  23.977  20.927  64.181  -3.688   0.100   0.710  O1A   9T1  20  
9T1  H111  H1   H  0  0  N  N  N  28.391  13.424  61.001   5.485  -1.465   0.033  H111  9T1  21  
9T1  H113  H2   H  0  0  N  N  N  26.760  13.597  60.268   4.743  -1.336  -1.579  H113  9T1  22  
9T1  H112  H3   H  0  0  N  N  N  28.032  14.818  59.925   5.069   0.134  -0.629  H112  9T1  23  
9T1  HN5   H4   H  0  1  N  N  N  25.893  15.942  60.680   2.473   0.097  -1.358  HN5   9T1  24  
9T1  H5    H5   H  0  1  N  N  N  26.164  16.480  63.631   1.103  -0.503   1.151  H5    9T1  25  
9T1  H32   H6   H  0  1  N  N  N  22.677  17.563  61.742  -1.531  -2.790  -0.662  H32   9T1  26  
9T1  H6    H7   H  0  1  N  N  N  25.901  18.149  61.120   0.176   0.746  -1.479  H6    9T1  27  
9T1  H7    H8   H  0  1  N  N  N  28.121  17.985  61.643   1.689   2.170  -0.182  H7    9T1  28  
9T1  HO7   H9   H  0  1  N  N  N  28.870  17.965  63.858  -0.080   1.654   2.061  HO7   9T1  29  
9T1  H8    H10  H  0  1  N  N  N  26.886  20.372  62.989  -1.234   2.930   0.264  H8    9T1  30  
9T1  HO8   H11  H  0  1  N  N  N  28.070  21.369  61.236  -0.891   3.984  -1.852  HO8   9T1  31  
9T1  H92   H12  H  0  1  N  N  N  28.866  19.858  64.387   1.298   4.624   0.074  H92   9T1  32  
9T1  H91   H13  H  0  1  N  N  N  29.895  19.825  62.915  -0.362   5.250   0.222  H91   9T1  33  
9T1  H14   H14  H  0  1  N  N  N  29.102  21.355  63.423   0.361   4.320   1.557  H14   9T1  34  
9T1  H15   H15  H  0  1  N  N  N  23.570  19.600  61.726  -1.799  -0.570  -1.635  H15   9T1  35  
9T1  HO1B  H16  H  0  0  N  N  N  22.118  20.176  65.161  -5.031  -1.603  -0.300  HO1B  9T1  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9T1  C11  C10   SING  N  N   1  
9T1  O8   C8    SING  N  N   2  
9T1  N5   C10   SING  N  N   3  
9T1  N5   C5    SING  N  N   4  
9T1  C10  O10   DOUB  N  N   5  
9T1  C6   C7    SING  N  N   6  
9T1  C6   C5    SING  N  N   7  
9T1  C6   O6    SING  N  N   8  
9T1  C7   C8    SING  N  N   9  
9T1  C7   O7    SING  N  N  10  
9T1  C8   C9    SING  N  N  11  
9T1  C2   C3    SING  N  N  12  
9T1  C2   O6    SING  N  N  13  
9T1  C2   C1    SING  N  N  14  
9T1  C5   C4    SING  N  N  15  
9T1  C3   C4    SING  N  N  16  
9T1  C3   F1    SING  N  N  17  
9T1  C4   O4    DOUB  N  N  18  
9T1  C1   O1A   DOUB  N  N  19  
9T1  C1   O1B   SING  N  N  20  
9T1  C11  H111  SING  N  N  21  
9T1  C11  H113  SING  N  N  22  
9T1  C11  H112  SING  N  N  23  
9T1  N5   HN5   SING  N  N  24  
9T1  C5   H5    SING  N  N  25  
9T1  C3   H32   SING  N  N  26  
9T1  C6   H6    SING  N  N  27  
9T1  C7   H7    SING  N  N  28  
9T1  O7   HO7   SING  N  N  29  
9T1  C8   H8    SING  N  N  30  
9T1  O8   HO8   SING  N  N  31  
9T1  C9   H92   SING  N  N  32  
9T1  C9   H91   SING  N  N  33  
9T1  C9   H14   SING  N  N  34  
9T1  C2   H15   SING  N  N  35  
9T1  O1B  HO1B  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9T1  SMILES            ACDLabs               12.01  "O=C(C)NC1C(=O)C(F)C(OC1C(C(C)O)O)C(=O)O"  
9T1  InChI             InChI                 1.03   "InChI=1S/C11H16FNO7/c1-3(14)7(16)10-6(13-4(2)15)8(17)5(12)9(20-10)11(18)19/h3,5-7,9-10,14,16H,1-2H3,(H,13,15)(H,18,19)/t3-,5-,6-,7-,9+,10-/m1/s1"  
9T1  InChIKey          InChI                 1.03   CNGWPEUTMWFBNW-QITVGDPKSA-N  
9T1  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O)[C@@H](O)[C@@H]1O[C@@H]([C@H](F)C(=O)[C@H]1NC(C)=O)C(O)=O"  
9T1  SMILES            CACTVS                3.385  "C[CH](O)[CH](O)[CH]1O[CH]([CH](F)C(=O)[CH]1NC(C)=O)C(O)=O"  
9T1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@H]([C@H]([C@H]1[C@@H](C(=O)[C@H]([C@H](O1)C(=O)O)F)NC(=O)C)O)O"  
9T1  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C(C1C(C(=O)C(C(O1)C(=O)O)F)NC(=O)C)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9T1  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(acetylamino)-2,6-anhydro-3,5,9-trideoxy-3-fluoro-D-erythro-L-gluco-non-4-ulosonic acid"  
9T1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;(2~{R},3~{S},5~{S},6~{R})-5-acetamido-6-[(1~{R},2~{R})-1,2-bis(oxidanyl)propyl]-3-fluoranyl-4-oxidanylidene-oxane-2-car
boxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9T1  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
9T1  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9T1  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9T1  "Create component"          2017-06-07  RCSB  
9T1  "Initial release"           2018-02-21  RCSB  
9T1  "Other modification"        2020-07-03  RCSB  
9T1  "Modify name"               2020-07-17  RCSB  
9T1  "Modify synonyms"           2020-07-17  RCSB  
9T1  "Modify internal type"      2020-07-17  RCSB  
9T1  "Modify linking type"       2020-07-17  RCSB  
9T1  "Modify atom id"            2020-07-17  RCSB  
9T1  "Modify component atom id"  2020-07-17  RCSB  
##
