data_AVU
#

_chem_comp.id                                   AVU
_chem_comp.name                                 
;[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl
[(2R,3R,4R)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H22 F N5 O12 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "arabinosyl-2-fluoro-deoxy-adenosine diphosphate ribose, ara-2'F-ADPR"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-07-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       545.307
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AVU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3I9M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AVU  N1      N1      N  0  1  Y  N  N   1.677  -4.374   5.236  -7.380  -3.716  -0.370  N1      AVU   1  
AVU  C2      C2      C  0  1  Y  N  N   2.989  -4.535   5.471  -7.171  -2.907  -1.393  C2      AVU   2  
AVU  N3      N3      N  0  1  Y  N  N   3.911  -3.792   4.829  -6.312  -1.911  -1.342  N3      AVU   3  
AVU  C4      C4      C  0  1  Y  N  N   3.483  -2.806   3.981  -5.611  -1.677  -0.237  C4      AVU   4  
AVU  C5      C5      C  0  1  Y  N  N   2.135  -2.595   3.725  -5.798  -2.509   0.879  C5      AVU   5  
AVU  C6      C6      C  0  1  Y  N  N   1.213  -3.388   4.404  -6.726  -3.560   0.775  C6      AVU   6  
AVU  N6      N6      N  0  1  N  N  N  -0.121  -3.205   4.192  -6.952  -4.412   1.842  N6      AVU   7  
AVU  N7      N7      N  0  1  Y  N  N   2.020  -1.552   2.848  -4.973  -2.059   1.855  N7      AVU   8  
AVU  C8      C8      C  0  1  Y  N  N   3.276  -1.179   2.563  -4.308  -1.029   1.419  C8      AVU   9  
AVU  N9      N9      N  0  1  Y  N  N   4.164  -1.971   3.230  -4.666  -0.754   0.133  N9      AVU  10  
AVU  PA      PA      P  0  1  N  N  N   7.186   3.590   4.762   1.066   2.748   0.483  PA      AVU  11  
AVU  PB      PB      P  0  1  N  N  N   4.547   4.767   4.255   3.741   1.491   0.704  PB      AVU  12  
AVU  "C1'"   "C1'"   C  0  1  N  N  R   5.644  -1.939   3.287  -4.139   0.329  -0.701  "C1'"   AVU  13  
AVU  O1A     O1A     O  0  1  N  N  N   8.287   4.363   4.128   0.907   2.753   1.954  O1A     AVU  14  
AVU  O1B     O1B     O  0  1  N  N  N   4.979   6.207   4.217   3.627   1.345   2.172  O1B     AVU  15  
AVU  C1R     C1R     C  0  1  N  N  N   2.718   2.918  -0.682   6.893  -2.533  -2.193  C1R     AVU  16  
AVU  "C2'"   "C2'"   C  0  1  N  N  R   6.294  -1.348   2.050  -5.018   1.592  -0.563  "C2'"   AVU  17  
AVU  "O2'"   "O2'"   O  0  1  N  N  N   7.456  -2.158   1.818  -5.935   1.685  -1.656  "O2'"   AVU  18  
AVU  O2A     O2A     O  0  1  N  N  N   6.938   3.826   6.222   1.378   4.243  -0.028  O2A     AVU  19  
AVU  O2B     O2B     O  0  1  N  N  N   3.743   4.202   5.378   4.724   2.719   0.362  O2B     AVU  20  
AVU  C2R     C2R     C  0  1  N  N  R   2.141   1.600  -0.136   7.561  -3.252  -1.006  C2R     AVU  21  
AVU  F2R     F2R     F  0  1  N  N  N   3.257   0.778  -0.002   8.953  -3.215  -1.131  F2R     AVU  22  
AVU  "C3'"   "C3'"   C  0  1  N  N  S   6.697   0.025   2.476  -4.008   2.760  -0.603  "C3'"   AVU  23  
AVU  "O3'"   "O3'"   O  0  1  N  N  N   7.888   0.344   1.752  -4.269   3.610  -1.721  "O3'"   AVU  24  
AVU  O3A     O3A     O  0  1  N  N  N   5.821   3.851   3.904   2.286   1.778   0.079  O3A     AVU  25  
AVU  C3R     C3R     C  0  1  N  N  R   1.578   2.019   1.206   7.107  -2.442   0.233  C3R     AVU  26  
AVU  O3R     O3R     O  0  1  N  N  N   0.147   2.103   1.178   6.782  -3.311   1.320  O3R     AVU  27  
AVU  "C4'"   "C4'"   C  0  1  N  N  R   6.899  -0.122   3.994  -2.637   2.065  -0.760  "C4'"   AVU  28  
AVU  "O4'"   "O4'"   O  0  1  N  N  N   6.017  -1.149   4.424  -2.835   0.735  -0.231  "O4'"   AVU  29  
AVU  C4R     C4R     C  0  1  N  N  R   2.147   3.383   1.534   5.840  -1.722  -0.297  C4R     AVU  30  
AVU  O4R     O4R     O  0  1  N  N  N   3.004   3.729   0.458   6.181  -1.402  -1.663  O4R     AVU  31  
AVU  "C5'"   "C5'"   C  0  1  N  N  N   6.545   1.066   4.861  -1.569   2.806   0.047  "C5'"   AVU  32  
AVU  "O5'"   "O5'"   O  0  1  N  N  N   7.461   2.085   4.492  -0.291   2.219  -0.203  "O5'"   AVU  33  
AVU  C5R     C5R     C  0  1  N  N  N   3.097   3.246   2.730   5.571  -0.447   0.504  C5R     AVU  34  
AVU  O5R     O5R     O  0  1  N  N  N   3.665   4.527   2.942   4.338   0.134   0.075  O5R     AVU  35  
AVU  H2      H2      H  0  1  N  N  N   3.311  -5.275   6.189  -7.724  -3.069  -2.306  H2      AVU  36  
AVU  HN6     HN6     H  0  1  N  N  N  -0.638  -3.878   4.721  -6.468  -4.288   2.673  HN6     AVU  37  
AVU  HN6A    HN6A    H  0  0  N  N  N  -0.381  -2.283   4.480  -7.595  -5.134   1.758  HN6A    AVU  38  
AVU  H8      H8      H  0  1  N  N  N   3.545  -0.369   1.901  -3.580  -0.474   1.992  H8      AVU  39  
AVU  "H1'"   "H1'"   H  0  1  N  N  N   5.995  -2.979   3.356  -4.085   0.013  -1.742  "H1'"   AVU  40  
AVU  H1R     H1R     H  0  1  N  N  N   3.634   2.729  -1.262   7.653  -2.195  -2.897  H1R     AVU  41  
AVU  H1RA    H1RA    H  0  0  N  N  N   1.990   3.417  -1.339   6.197  -3.208  -2.692  H1RA    AVU  42  
AVU  "H2'"   "H2'"   H  0  1  N  N  N   5.667  -1.315   1.146  -5.554   1.582   0.386  "H2'"   AVU  43  
AVU  "HO2'"  "HO2'"  H  0  0  N  N  N   7.916  -1.840   1.050  -6.512   2.459  -1.620  "HO2'"  AVU  44  
AVU  HO2A    HO2A    H  0  0  N  N  N   7.555   4.471   6.548   1.495   4.315  -0.985  HO2A    AVU  45  
AVU  HO2B    HO2B    H  0  0  N  N  N   3.570   4.882   6.018   4.846   2.874  -0.585  HO2B    AVU  46  
AVU  H2R     H2R     H  0  1  N  N  N   1.375   1.083  -0.733   7.212  -4.283  -0.939  H2R     AVU  47  
AVU  "H3'"   "H3'"   H  0  1  N  N  N   5.984   0.838   2.276  -4.044   3.328   0.327  "H3'"   AVU  48  
AVU  "HO3'"  "HO3'"  H  0  0  N  N  N   8.182   1.215   1.993  -5.143   4.025  -1.704  "HO3'"  AVU  49  
AVU  H3R     H3R     H  0  1  N  N  N   1.853   1.269   1.962   7.869  -1.721   0.527  H3R     AVU  50  
AVU  HO3R    HO3R    H  0  0  N  N  N  -0.172   2.367   2.033   7.524  -3.850   1.627  HO3R    AVU  51  
AVU  "H4'"   "H4'"   H  0  1  N  N  N   7.979  -0.295   4.115  -2.354   2.017  -1.811  "H4'"   AVU  52  
AVU  H4R     H4R     H  0  1  N  N  N   1.333   4.099   1.721   4.977  -2.387  -0.259  H4R     AVU  53  
AVU  "H5'"   "H5'"   H  0  1  N  N  N   5.508   1.387   4.682  -1.552   3.855  -0.249  "H5'"   AVU  54  
AVU  "H5'A"  "H5'A"  H  0  0  N  N  N   6.645   0.817   5.928  -1.801   2.733   1.110  "H5'A"  AVU  55  
AVU  H5R     H5R     H  0  1  N  N  N   2.546   2.917   3.623   5.508  -0.690   1.565  H5R     AVU  56  
AVU  H5RA    H5RA    H  0  0  N  N  N   3.883   2.508   2.514   6.383   0.263   0.342  H5RA    AVU  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AVU  C6     N1      DOUB  Y  N   1  
AVU  N1     C2      SING  Y  N   2  
AVU  N3     C2      DOUB  Y  N   3  
AVU  C2     H2      SING  N  N   4  
AVU  C4     N3      SING  Y  N   5  
AVU  N9     C4      SING  Y  N   6  
AVU  C5     C4      DOUB  Y  N   7  
AVU  N7     C5      SING  Y  N   8  
AVU  C5     C6      SING  Y  N   9  
AVU  N6     C6      SING  N  N  10  
AVU  N6     HN6     SING  N  N  11  
AVU  N6     HN6A    SING  N  N  12  
AVU  C8     N7      DOUB  Y  N  13  
AVU  C8     N9      SING  Y  N  14  
AVU  C8     H8      SING  N  N  15  
AVU  N9     "C1'"   SING  N  N  16  
AVU  O3A    PA      SING  N  N  17  
AVU  O1A    PA      DOUB  N  N  18  
AVU  "O5'"  PA      SING  N  N  19  
AVU  PA     O2A     SING  N  N  20  
AVU  O5R    PB      SING  N  N  21  
AVU  O3A    PB      SING  N  N  22  
AVU  O1B    PB      DOUB  N  N  23  
AVU  PB     O2B     SING  N  N  24  
AVU  "C2'"  "C1'"   SING  N  N  25  
AVU  "C1'"  "O4'"   SING  N  N  26  
AVU  "C1'"  "H1'"   SING  N  N  27  
AVU  C1R    C2R     SING  N  N  28  
AVU  C1R    O4R     SING  N  N  29  
AVU  C1R    H1R     SING  N  N  30  
AVU  C1R    H1RA    SING  N  N  31  
AVU  "O2'"  "C2'"   SING  N  N  32  
AVU  "C2'"  "C3'"   SING  N  N  33  
AVU  "C2'"  "H2'"   SING  N  N  34  
AVU  "O2'"  "HO2'"  SING  N  N  35  
AVU  O2A    HO2A    SING  N  N  36  
AVU  O2B    HO2B    SING  N  N  37  
AVU  C2R    F2R     SING  N  N  38  
AVU  C2R    C3R     SING  N  N  39  
AVU  C2R    H2R     SING  N  N  40  
AVU  "O3'"  "C3'"   SING  N  N  41  
AVU  "C3'"  "C4'"   SING  N  N  42  
AVU  "C3'"  "H3'"   SING  N  N  43  
AVU  "O3'"  "HO3'"  SING  N  N  44  
AVU  O3R    C3R     SING  N  N  45  
AVU  C3R    C4R     SING  N  N  46  
AVU  C3R    H3R     SING  N  N  47  
AVU  O3R    HO3R    SING  N  N  48  
AVU  "C4'"  "O4'"   SING  N  N  49  
AVU  "C4'"  "C5'"   SING  N  N  50  
AVU  "C4'"  "H4'"   SING  N  N  51  
AVU  O4R    C4R     SING  N  N  52  
AVU  C4R    C5R     SING  N  N  53  
AVU  C4R    H4R     SING  N  N  54  
AVU  "O5'"  "C5'"   SING  N  N  55  
AVU  "C5'"  "H5'"   SING  N  N  56  
AVU  "C5'"  "H5'A"  SING  N  N  57  
AVU  C5R    O5R     SING  N  N  58  
AVU  C5R    H5R     SING  N  N  59  
AVU  C5R    H5RA    SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AVU  SMILES            ACDLabs               11.02  "FC1C(O)C(OC1)COP(=O)(O)OP(=O)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O"  
AVU  SMILES_CANONICAL  CACTVS                3.352  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4OC[C@@H](F)[C@@H]4O)[C@@H](O)[C@H]3O"  
AVU  SMILES            CACTVS                3.352  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OC[CH](F)[CH]4O)[CH](O)[CH]3O"  
AVU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@@H](CO4)F)O)O)O)N"  
AVU  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(CO4)F)O)O)O)N"  
AVU  InChI             InChI                 1.03   "InChI=1S/C15H22FN5O12P2/c16-6-1-29-7(10(6)22)2-30-34(25,26)33-35(27,28)31-3-8-11(23)12(24)15(32-8)21-5-20-9-13(17)18-4-19-14(9)21/h4-8,10-12,15,22-24H,1-3H2,(H,25,26)(H,27,28)(H2,17,18,19)/t6-,7-,8-,10+,11-,12-,15-/m1/s1"  
AVU  InChIKey          InChI                 1.03   GOCJJDZHXMDJEZ-WFCIOUKESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AVU  "SYSTEMATIC NAME"  ACDLabs               11.02  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4R)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
AVU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4R)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AVU  "Create component"      2009-07-14  PDBJ  
AVU  "Modify aromatic_flag"  2011-06-04  RCSB  
AVU  "Modify descriptor"     2011-06-04  RCSB  
AVU  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     AVU
_pdbx_chem_comp_synonyms.name        "arabinosyl-2-fluoro-deoxy-adenosine diphosphate ribose, ara-2'F-ADPR"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
