data_B6Y
#

_chem_comp.id                                   B6Y
_chem_comp.name                                 "(1R,2S)-2-{[N-({[1-(tert-butoxycarbonyl)-4-ethylpiperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H46 N4 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-08-02
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       606.729
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B6Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WKM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B6Y  C02  C1   C  0  1  N  N  N  -21.560  -5.493   2.041  -1.004  -1.417   0.479  C02  B6Y   1  
B6Y  C04  C2   C  0  1  N  N  S  -20.941  -3.107   1.898   1.374  -0.941   0.709  C04  B6Y   2  
B6Y  C05  C3   C  0  1  N  N  N  -20.959  -1.993   0.850   2.027  -2.311   0.903  C05  B6Y   3  
B6Y  C06  C4   C  0  1  N  N  N  -20.470  -2.427  -0.542   1.095  -3.209   1.720  C06  B6Y   4  
B6Y  C07  C5   C  0  1  N  N  N  -18.940  -2.453  -0.604   1.690  -4.615   1.808  C07  B6Y   5  
B6Y  C08  C6   C  0  1  N  N  N  -21.038  -1.525  -1.638   0.937  -2.632   3.128  C08  B6Y   6  
B6Y  C09  C7   C  0  1  N  N  N  -21.482  -2.563   3.229   2.341  -0.019   0.012  C09  B6Y   7  
B6Y  C11  C8   C  0  1  N  N  S  -21.082  -1.377   5.418   4.422   1.247  -0.043  C11  B6Y   8  
B6Y  C12  C9   C  0  1  N  N  N  -20.445  -2.139   6.589   4.747   0.808  -1.472  C12  B6Y   9  
B6Y  C13  C10  C  0  1  N  N  S  -20.821  -3.622   6.641   5.482  -0.533  -1.440  C13  B6Y  10  
B6Y  C14  C11  C  0  1  N  N  N  -20.130  -4.294   7.903   5.807  -0.993  -2.844  C14  B6Y  11  
B6Y  C16  C12  C  0  1  N  N  N  -22.460  -4.862   7.741   7.733  -1.345  -1.594  C16  B6Y  12  
B6Y  C17  C13  C  0  1  N  N  N  -22.327  -3.803   6.882   6.863  -0.378  -0.762  C17  B6Y  13  
B6Y  C19  C14  C  0  1  N  N  R  -20.707   0.092   5.412   3.735   2.613  -0.072  C19  B6Y  14  
B6Y  C23  C15  C  0  1  N  N  N  -22.100  -7.794   2.237  -3.316  -2.006   0.409  C23  B6Y  15  
B6Y  N03  N1   N  0  1  N  N  N  -21.797  -4.188   1.478   0.165  -1.087  -0.105  N03  B6Y  16  
B6Y  N10  N2   N  0  1  N  N  N  -20.584  -1.900   4.165   3.530   0.264   0.578  N10  B6Y  17  
B6Y  N15  N3   N  0  1  N  N  N  -21.094  -5.007   8.550   7.075  -1.437  -2.903  N15  B6Y  18  
B6Y  O01  O1   O  0  1  N  N  N  -20.715  -5.630   2.877  -1.055  -1.594   1.680  O01  B6Y  19  
B6Y  O18  O2   O  0  1  N  N  N  -18.989  -4.173   8.211   5.037  -0.965  -3.780  O18  B6Y  20  
B6Y  O20  O3   O  0  1  N  N  N  -21.346   0.676   4.315   4.626   3.583  -0.626  O20  B6Y  21  
B6Y  O21  O4   O  0  1  N  N  N  -22.624  -2.673   3.510   2.048   0.469  -1.060  O21  B6Y  22  
B6Y  O22  O5   O  0  1  N  N  N  -22.340  -6.566   1.581  -2.117  -1.546  -0.268  O22  B6Y  23  
B6Y  S1   S1   S  0  1  N  Y  N  -18.933   0.233   5.160   3.286   3.100   1.617  S1   B6Y  24  
B6Y  H1   H1   H  0  1  N  N  N  -19.909  -3.460   2.040   1.110  -0.523   1.681  H1   B6Y  25  
B6Y  H2   H2   H  0  1  N  N  N  -20.312  -1.177   1.204   2.210  -2.767  -0.070  H2   B6Y  26  
B6Y  H3   H3   H  0  1  N  N  N  -21.992  -1.627   0.754   2.972  -2.192   1.432  H3   B6Y  27  
B6Y  H4   H4   H  0  1  N  N  N  -20.833  -3.449  -0.723   0.119  -3.256   1.236  H4   B6Y  28  
B6Y  H5   H5   H  0  1  N  N  N  -18.551  -3.106   0.191   2.665  -4.568   2.292  H5   B6Y  29  
B6Y  H6   H6   H  0  1  N  N  N  -18.619  -2.837  -1.584   1.026  -5.255   2.390  H6   B6Y  30  
B6Y  H7   H7   H  0  1  N  N  N  -18.550  -1.434  -0.464   1.802  -5.026   0.805  H7   B6Y  31  
B6Y  H8   H8   H  0  1  N  N  N  -22.136  -1.520  -1.577   0.513  -1.630   3.066  H8   B6Y  32  
B6Y  H9   H9   H  0  1  N  N  N  -20.658  -0.501  -1.504   0.274  -3.272   3.711  H9   B6Y  33  
B6Y  H10  H10  H  0  1  N  N  N  -20.728  -1.905  -2.623   1.913  -2.585   3.613  H10  B6Y  34  
B6Y  H11  H11  H  0  1  N  N  N  -22.176  -1.478   5.471   5.344   1.316   0.534  H11  B6Y  35  
B6Y  H12  H12  H  0  1  N  N  N  -19.351  -2.062   6.499   3.822   0.703  -2.039  H12  B6Y  36  
B6Y  H13  H13  H  0  1  N  N  N  -20.770  -1.666   7.528   5.380   1.558  -1.947  H13  B6Y  37  
B6Y  H14  H14  H  0  1  N  N  N  -20.509  -4.137   5.721   4.884  -1.282  -0.920  H14  B6Y  38  
B6Y  H15  H15  H  0  1  N  N  N  -23.290  -4.676   8.438   8.741  -0.945  -1.706  H15  B6Y  39  
B6Y  H16  H16  H  0  1  N  N  N  -22.658  -5.783   7.172   7.768  -2.326  -1.120  H16  B6Y  40  
B6Y  H17  H17  H  0  1  N  N  N  -22.752  -2.893   7.332   7.227   0.646  -0.848  H17  B6Y  41  
B6Y  H18  H18  H  0  1  N  N  N  -22.841  -4.017   5.933   6.822  -0.690   0.282  H18  B6Y  42  
B6Y  H19  H19  H  0  1  N  N  N  -20.954   0.575   6.369   2.835   2.554  -0.684  H19  B6Y  43  
B6Y  H23  H23  H  0  1  N  N  N  -22.532  -4.037   0.817   0.205  -0.946  -1.064  H23  B6Y  44  
B6Y  H24  H24  H  0  1  N  N  N  -19.614  -1.806   3.939   3.796  -0.182   1.398  H24  B6Y  45  
B6Y  H25  H25  H  0  1  N  N  N  -20.966  -5.533   9.391   7.499  -1.774  -3.707  H25  B6Y  46  
B6Y  H26  H26  H  0  1  N  N  N  -21.133   1.601   4.279   4.908   3.386  -1.530  H26  B6Y  47  
B6Y  O1   O6   O  0  1  N  N  N        ?       ?       ?   4.393   2.939   2.493  O1   B6Y  48  
B6Y  O2   O7   O  0  1  N  N  N        ?       ?       ?   2.531   4.304   1.605  O2   B6Y  49  
B6Y  O3   O8   O  0  1  N  N  N        ?       ?       ?   2.293   2.039   2.067  O3   B6Y  50  
B6Y  C1   C16  C  0  1  N  N  N        ?       ?       ?  -3.724  -0.984   1.474  C1   B6Y  51  
B6Y  C2   C17  C  0  1  N  N  N        ?       ?       ?  -3.967   0.373   0.807  C2   B6Y  52  
B6Y  N1   N4   N  0  1  N  N  N        ?       ?       ?  -4.949   0.201  -0.272  N1   B6Y  53  
B6Y  C4   C18  C  0  1  N  N  N        ?       ?       ?  -4.699  -0.818  -1.299  C4   B6Y  54  
B6Y  C5   C19  C  0  1  N  N  N        ?       ?       ?  -4.448  -2.163  -0.609  C5   B6Y  55  
B6Y  C3   C20  C  0  1  N  N  N        ?       ?       ?  -6.059   0.964  -0.317  C3   B6Y  56  
B6Y  O4   O9   O  0  1  N  N  N        ?       ?       ?  -6.255   1.804   0.539  O4   B6Y  57  
B6Y  O5   O10  O  0  1  N  N  N        ?       ?       ?  -6.951   0.796  -1.312  O5   B6Y  58  
B6Y  C10  C21  C  0  1  N  N  N        ?       ?       ?  -3.039  -3.354   1.076  C10  B6Y  59  
B6Y  H21  H21  H  0  1  N  Y  N        ?       ?       ?   1.959   2.168   2.965  H21  B6Y  60  
B6Y  H22  H22  H  0  1  N  N  N        ?       ?       ?  -4.638  -1.317   1.966  H22  B6Y  61  
B6Y  H27  H27  H  0  1  N  N  N        ?       ?       ?  -2.927  -0.890   2.211  H27  B6Y  62  
B6Y  H28  H28  H  0  1  N  N  N        ?       ?       ?  -4.352   1.078   1.544  H28  B6Y  63  
B6Y  H29  H29  H  0  1  N  N  N        ?       ?       ?  -3.031   0.749   0.393  H29  B6Y  64  
B6Y  H30  H30  H  0  1  N  N  N        ?       ?       ?  -5.568  -0.900  -1.953  H30  B6Y  65  
B6Y  H31  H31  H  0  1  N  N  N        ?       ?       ?  -3.823  -0.539  -1.885  H31  B6Y  66  
B6Y  H32  H32  H  0  1  N  N  N        ?       ?       ?  -4.166  -2.907  -1.354  H32  B6Y  67  
B6Y  H33  H33  H  0  1  N  N  N        ?       ?       ?  -5.355  -2.484  -0.098  H33  B6Y  68  
B6Y  C6   C22  C  0  1  N  N  N        ?       ?       ?  -8.123   1.653  -1.298  C6   B6Y  69  
B6Y  C7   C23  C  0  1  N  N  N        ?       ?       ?  -7.686   3.117  -1.381  C7   B6Y  70  
B6Y  C8   C24  C  0  1  N  N  N        ?       ?       ?  -9.014   1.318  -2.496  C8   B6Y  71  
B6Y  C9   C25  C  0  1  N  N  N        ?       ?       ?  -8.905   1.427  -0.002  C9   B6Y  72  
B6Y  H34  H34  H  0  1  N  N  N        ?       ?       ?  -7.130   3.278  -2.304  H34  B6Y  73  
B6Y  H35  H35  H  0  1  N  N  N        ?       ?       ?  -8.566   3.760  -1.371  H35  B6Y  74  
B6Y  H36  H36  H  0  1  N  N  N        ?       ?       ?  -7.052   3.355  -0.528  H36  B6Y  75  
B6Y  H37  H37  H  0  1  N  N  N        ?       ?       ?  -9.326   0.275  -2.437  H37  B6Y  76  
B6Y  H38  H38  H  0  1  N  N  N        ?       ?       ?  -9.894   1.961  -2.485  H38  B6Y  77  
B6Y  H39  H39  H  0  1  N  N  N        ?       ?       ?  -8.458   1.479  -3.419  H39  B6Y  78  
B6Y  H40  H40  H  0  1  N  N  N        ?       ?       ?  -8.270   1.665   0.851  H40  B6Y  79  
B6Y  H41  H41  H  0  1  N  N  N        ?       ?       ?  -9.785   2.070   0.008  H41  B6Y  80  
B6Y  H42  H42  H  0  1  N  N  N        ?       ?       ?  -9.216   0.384   0.057  H42  B6Y  81  
B6Y  C15  C26  C  0  1  N  N  N        ?       ?       ?  -2.581  -4.361   0.019  C15  B6Y  82  
B6Y  H20  H20  H  0  1  N  N  N        ?       ?       ?  -2.258  -3.235   1.827  H20  B6Y  83  
B6Y  H43  H43  H  0  1  N  N  N        ?       ?       ?  -3.950  -3.717   1.553  H43  B6Y  84  
B6Y  H44  H44  H  0  1  N  N  N        ?       ?       ?  -2.463  -5.343   0.479  H44  B6Y  85  
B6Y  H45  H45  H  0  1  N  N  N        ?       ?       ?  -3.326  -4.419  -0.774  H45  B6Y  86  
B6Y  H46  H46  H  0  1  N  N  N        ?       ?       ?  -1.628  -4.040  -0.400  H46  B6Y  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B6Y  C08  C06  SING  N  N   1  
B6Y  C07  C06  SING  N  N   2  
B6Y  C06  C05  SING  N  N   3  
B6Y  C05  C04  SING  N  N   4  
B6Y  N03  C04  SING  N  N   5  
B6Y  N03  C02  SING  N  N   6  
B6Y  O22  C02  SING  N  N   7  
B6Y  O22  C23  SING  N  N   8  
B6Y  C04  C09  SING  N  N   9  
B6Y  C02  O01  DOUB  N  N  10  
B6Y  C09  O21  DOUB  N  N  11  
B6Y  C09  N10  SING  N  N  12  
B6Y  N10  C11  SING  N  N  13  
B6Y  O20  C19  SING  N  N  14  
B6Y  C19  C11  SING  N  N  15  
B6Y  C11  C12  SING  N  N  16  
B6Y  C12  C13  SING  N  N  17  
B6Y  C13  C17  SING  N  N  18  
B6Y  C13  C14  SING  N  N  19  
B6Y  C17  C16  SING  N  N  20  
B6Y  C16  N15  SING  N  N  21  
B6Y  C14  O18  DOUB  N  N  22  
B6Y  C14  N15  SING  N  N  23  
B6Y  C19  S1   SING  N  N  24  
B6Y  C04  H1   SING  N  N  25  
B6Y  C05  H2   SING  N  N  26  
B6Y  C05  H3   SING  N  N  27  
B6Y  C06  H4   SING  N  N  28  
B6Y  C07  H5   SING  N  N  29  
B6Y  C07  H6   SING  N  N  30  
B6Y  C07  H7   SING  N  N  31  
B6Y  C08  H8   SING  N  N  32  
B6Y  C08  H9   SING  N  N  33  
B6Y  C08  H10  SING  N  N  34  
B6Y  C11  H11  SING  N  N  35  
B6Y  C12  H12  SING  N  N  36  
B6Y  C12  H13  SING  N  N  37  
B6Y  C13  H14  SING  N  N  38  
B6Y  C16  H15  SING  N  N  39  
B6Y  C16  H16  SING  N  N  40  
B6Y  C17  H17  SING  N  N  41  
B6Y  C17  H18  SING  N  N  42  
B6Y  C19  H19  SING  N  N  43  
B6Y  N03  H23  SING  N  N  44  
B6Y  N10  H24  SING  N  N  45  
B6Y  N15  H25  SING  N  N  46  
B6Y  O20  H26  SING  N  N  47  
B6Y  S1   O1   DOUB  N  N  48  
B6Y  S1   O2   DOUB  N  N  49  
B6Y  S1   O3   SING  N  N  50  
B6Y  C23  C1   SING  N  N  51  
B6Y  C1   C2   SING  N  N  52  
B6Y  C2   N1   SING  N  N  53  
B6Y  N1   C4   SING  N  N  54  
B6Y  C4   C5   SING  N  N  55  
B6Y  C5   C23  SING  N  N  56  
B6Y  N1   C3   SING  N  N  57  
B6Y  C3   O4   DOUB  N  N  58  
B6Y  C3   O5   SING  N  N  59  
B6Y  C23  C10  SING  N  N  60  
B6Y  O3   H21  SING  N  N  61  
B6Y  C1   H22  SING  N  N  62  
B6Y  C1   H27  SING  N  N  63  
B6Y  C2   H28  SING  N  N  64  
B6Y  C2   H29  SING  N  N  65  
B6Y  C4   H30  SING  N  N  66  
B6Y  C4   H31  SING  N  N  67  
B6Y  C5   H32  SING  N  N  68  
B6Y  C5   H33  SING  N  N  69  
B6Y  O5   C6   SING  N  N  70  
B6Y  C6   C7   SING  N  N  71  
B6Y  C6   C8   SING  N  N  72  
B6Y  C6   C9   SING  N  N  73  
B6Y  C7   H34  SING  N  N  74  
B6Y  C7   H35  SING  N  N  75  
B6Y  C7   H36  SING  N  N  76  
B6Y  C8   H37  SING  N  N  77  
B6Y  C8   H38  SING  N  N  78  
B6Y  C8   H39  SING  N  N  79  
B6Y  C9   H40  SING  N  N  80  
B6Y  C9   H41  SING  N  N  81  
B6Y  C9   H42  SING  N  N  82  
B6Y  C10  C15  SING  N  N  83  
B6Y  C10  H20  SING  N  N  84  
B6Y  C10  H43  SING  N  N  85  
B6Y  C15  H44  SING  N  N  86  
B6Y  C15  H45  SING  N  N  87  
B6Y  C15  H46  SING  N  N  88  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B6Y  SMILES            ACDLabs               12.01  "C(=O)(NC(C(=O)NC(CC1CCNC1=O)C(S(=O)(=O)O)O)CC(C)C)OC2(CCN(CC2)C(=O)OC(C)(C)C)CC"  
B6Y  InChI             InChI                 1.03   "InChI=1S/C26H46N4O10S/c1-7-26(9-12-30(13-10-26)24(35)40-25(4,5)6)39-23(34)29-18(14-16(2)3)21(32)28-19(22(33)41(36,37)38)15-17-8-11-27-20(17)31/h16-19,22,33H,7-15H2,1-6H3,(H,27,31)(H,28,32)(H,29,34)(H,36,37,38)/t17-,18-,19-,22+/m0/s1"  
B6Y  InChIKey          InChI                 1.03   XQPCHNVZRFSEQT-ZVVDCOBXSA-N  
B6Y  SMILES_CANONICAL  CACTVS                3.385  "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"  
B6Y  SMILES            CACTVS                3.385  "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"  
B6Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)S(=O)(=O)O"  
B6Y  SMILES            "OpenEye OEToolkits"  2.0.6  "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B6Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-2-{[N-({[1-(tert-butoxycarbonyl)-4-ethylpiperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
B6Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(1~{R},2~{S})-2-[[(2~{S})-2-[[4-ethyl-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-4-yl]oxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B6Y  "Create component"  2017-08-02  RCSB  
B6Y  "Initial release"   2018-04-04  RCSB  
B6Y  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     B6Y
_pdbx_chem_comp_synonyms.name        "bound form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
