data_BJO
#

_chem_comp.id                                   BJO
_chem_comp.name                                 "(4Z)-4-amino-4-{1-(carboxymethyl)-5-oxo-4-[(4-oxocyclohexa-2,5-dien-1-ylidene)methyl]-1,5-dihydro-2H-imidazol-2-ylidene}butanoic acid"
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C16 H15 N3 O6"
_chem_comp.mon_nstd_parent_comp_id              "LEU, LEU, GLY"
_chem_comp.pdbx_synonyms                        "CHROMOPHORE (GLU-TYR-GLY)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       345.307
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BJO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6JC6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BJO  OE1  O1   O  0  1  N  N  N  42.619  -10.289  155.713   1.076  -4.341  -0.765  OE1  BJO   1  
BJO  CD3  C1   C  0  1  N  N  N  42.057  -11.216  156.353   0.564  -4.129   0.309  CD3  BJO   2  
BJO  OE2  O2   O  0  1  N  N  N  41.916  -12.348  155.820   0.913  -4.866   1.376  OE2  BJO   3  
BJO  CG1  C2   C  0  1  N  N  N  41.555  -10.964  157.772  -0.461  -3.034   0.452  CG1  BJO   4  
BJO  CB1  C3   C  0  1  N  N  N  40.532   -9.832  157.774  -0.669  -2.350  -0.901  CB1  BJO   5  
BJO  CA1  C4   C  0  1  N  N  N  39.593  -10.089  158.945  -1.694  -1.255  -0.757  CA1  BJO   6  
BJO  N    N1   N  0  1  N  N  N  38.746  -11.138  158.880  -3.002  -1.544  -0.847  N    BJO   7  
BJO  C1   C5   C  0  1  N  N  N  39.930   -9.479  160.185  -1.282   0.065  -0.531  C1   BJO   8  
BJO  N2   N2   N  0  1  N  N  N  41.066   -8.651  160.320  -0.039   0.435  -0.303  N2   BJO   9  
BJO  CA2  C6   C  0  1  N  N  N  41.169   -8.158  161.641   0.012   1.758  -0.128  CA2  BJO  10  
BJO  C2   C7   C  0  1  N  N  N  40.013   -8.722  162.414  -1.368   2.257  -0.266  C2   BJO  11  
BJO  O2   O3   O  0  1  N  N  N  39.735   -8.548  163.557  -1.747   3.410  -0.175  O2   BJO  12  
BJO  N3   N3   N  0  1  N  N  N  39.237   -9.557  161.465  -2.125   1.165  -0.520  N3   BJO  13  
BJO  CA3  C8   C  0  1  N  N  N  38.014  -10.267  161.781  -3.573   1.149  -0.741  CA3  BJO  14  
BJO  C    C9   C  0  1  N  N  N  38.241  -11.759  161.950  -4.278   0.901   0.567  C    BJO  15  
BJO  O    O4   O  0  1  N  N  N  37.245  -12.466  162.233  -3.637   0.754   1.581  O    BJO  16  
BJO  CB2  C10  C  0  1  N  N  N  42.220   -7.303  162.038   1.157   2.524   0.135  CB2  BJO  17  
BJO  CG2  C11  C  0  1  N  N  N  42.417   -6.406  163.244   2.425   1.924   0.105  CG2  BJO  18  
BJO  CD1  C12  C  0  1  N  N  N  43.114   -5.219  163.106   2.568   0.595  -0.352  CD1  BJO  19  
BJO  CE1  C13  C  0  1  N  N  N  43.305   -4.416  164.217   3.795   0.016  -0.380  CE1  BJO  20  
BJO  CZ   C14  C  0  1  N  N  N  42.807   -4.808  165.451   4.926   0.740   0.046  CZ   BJO  21  
BJO  OH   O5   O  0  1  N  N  N  43.003   -4.008  166.578   6.032   0.216   0.020  OH   BJO  22  
BJO  CE2  C15  C  0  1  N  N  N  42.122   -6.000  165.585   4.786   2.065   0.502  CE2  BJO  23  
BJO  CD2  C16  C  0  1  N  N  N  41.933   -6.800  164.476   3.561   2.649   0.526  CD2  BJO  24  
BJO  OXT  O6   O  0  1  N  Y  N  39.471  -12.187  161.782  -5.618   0.845   0.607  OXT  BJO  25  
BJO  H1   H1   H  0  1  N  N  N  42.284  -12.334  154.944   1.577  -5.554   1.236  H1   BJO  26  
BJO  H11  H2   H  0  1  N  N  N  41.085  -11.880  158.159  -1.405  -3.461   0.792  H11  BJO  27  
BJO  H12  H3   H  0  1  N  N  N  42.404  -10.688  158.414  -0.111  -2.302   1.179  H12  BJO  28  
BJO  H10  H4   H  0  1  N  N  N  41.039   -8.864  157.900   0.274  -1.923  -1.241  H10  BJO  29  
BJO  H9   H5   H  0  1  N  N  N  39.968   -9.830  156.830  -1.020  -3.083  -1.628  H9   BJO  30  
BJO  H    H7   H  0  1  N  Y  N  38.198  -11.177  159.716  -3.656  -0.971  -0.417  H    BJO  31  
BJO  H2   H8   H  0  1  N  N  N  38.142  -11.030  158.090  -3.293  -2.326  -1.342  H2   BJO  32  
BJO  H31  H11  H  0  1  N  N  N  37.603   -9.863  162.718  -3.889   2.109  -1.148  H31  BJO  33  
BJO  H32  H12  H  0  1  N  N  N  37.293  -10.109  160.966  -3.824   0.355  -1.445  H32  BJO  34  
BJO  H13  H13  H  0  1  N  N  N  43.048   -7.284  161.345   1.062   3.576   0.361  H13  BJO  35  
BJO  H15  H15  H  0  1  N  N  N  43.504   -4.923  162.144   1.701   0.040  -0.678  H15  BJO  36  
BJO  H16  H16  H  0  1  N  N  N  43.842   -3.484  164.123   3.905  -1.000  -0.729  H16  BJO  37  
BJO  H18  H18  H  0  1  N  N  N  41.738   -6.303  166.548   5.654   2.618   0.828  H18  BJO  38  
BJO  H19  H19  H  0  1  N  N  N  41.405   -7.737  164.572   3.454   3.667   0.871  H19  BJO  39  
BJO  HXT  H20  H  0  1  N  Y  N  39.499  -13.128  161.908  -6.025   0.683   1.469  HXT  BJO  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BJO  OE1  CD3  DOUB  N  N   1  
BJO  OE2  CD3  SING  N  N   2  
BJO  CD3  CG1  SING  N  N   3  
BJO  CG1  CB1  SING  N  N   4  
BJO  CB1  CA1  SING  N  N   5  
BJO  N    CA1  SING  N  N   6  
BJO  CA1  C1   DOUB  N  Z   7  
BJO  C1   N2   SING  N  N   8  
BJO  C1   N3   SING  N  N   9  
BJO  N2   CA2  DOUB  N  N  10  
BJO  N3   CA3  SING  N  N  11  
BJO  N3   C2   SING  N  N  12  
BJO  CA2  CB2  SING  N  N  13  
BJO  CA2  C2   SING  N  N  14  
BJO  CA3  C    SING  N  N  15  
BJO  C    O    DOUB  N  N  16  
BJO  CB2  CG2  DOUB  N  N  17  
BJO  C2   O2   DOUB  N  N  18  
BJO  CD1  CG2  SING  N  N  19  
BJO  CD1  CE1  DOUB  N  N  20  
BJO  CG2  CD2  SING  N  N  21  
BJO  CE1  CZ   SING  N  N  22  
BJO  CD2  CE2  DOUB  N  N  23  
BJO  CZ   CE2  SING  N  N  24  
BJO  CZ   OH   DOUB  N  N  25  
BJO  C    OXT  SING  N  N  26  
BJO  OE2  H1   SING  N  N  27  
BJO  CG1  H11  SING  N  N  28  
BJO  CG1  H12  SING  N  N  29  
BJO  CB1  H10  SING  N  N  30  
BJO  CB1  H9   SING  N  N  31  
BJO  N    H    SING  N  N  32  
BJO  N    H2   SING  N  N  33  
BJO  CA3  H31  SING  N  N  34  
BJO  CA3  H32  SING  N  N  35  
BJO  CB2  H13  SING  N  N  36  
BJO  CD1  H15  SING  N  N  37  
BJO  CE1  H16  SING  N  N  38  
BJO  CE2  H18  SING  N  N  39  
BJO  CD2  H19  SING  N  N  40  
BJO  OXT  HXT  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BJO  SMILES            ACDLabs               12.01  "O=C(CC\C(=C2/N=C(\C=C1/C=CC(C=C1)=O)C(=O)N2CC(=O)O)N)O"  
BJO  InChI             InChI                 1.03   "InChI=1S/C16H15N3O6/c17-11(5-6-13(21)22)15-18-12(16(25)19(15)8-14(23)24)7-9-1-3-10(20)4-2-9/h1-4,7H,5-6,8,17H2,(H,21,22)(H,23,24)/b15-11-"  
BJO  InChIKey          InChI                 1.03   XGBHJLIZOKMMSK-PTNGSMBKSA-N  
BJO  SMILES_CANONICAL  CACTVS                3.385  "NC(/CCC(O)=O)=C1/N=C(C=C2C=CC(=O)C=C2)C(=O)N1CC(O)=O"  
BJO  SMILES            CACTVS                3.385  "NC(CCC(O)=O)=C1N=C(C=C2C=CC(=O)C=C2)C(=O)N1CC(O)=O"  
BJO  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1=CC(=O)C=CC1=CC2=N/C(=C(\CCC(=O)O)/N)/N(C2=O)CC(=O)O"  
BJO  SMILES            "OpenEye OEToolkits"  2.0.6  "C1=CC(=O)C=CC1=CC2=NC(=C(CCC(=O)O)N)N(C2=O)CC(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BJO  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4Z)-4-amino-4-{1-(carboxymethyl)-5-oxo-4-[(4-oxocyclohexa-2,5-dien-1-ylidene)methyl]-1,5-dihydro-2H-imidazol-2-ylidene}butanoic acid"  
BJO  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(4~{Z})-4-azanyl-4-[1-(2-hydroxy-2-oxoethyl)-5-oxidanylidene-4-[(4-oxidanylidenecyclohexa-2,5-dien-1-ylidene)methyl]imidazol-2-ylidene]butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BJO  "Create component"  2019-02-07  PDBJ  
BJO  "Modify synonyms"   2019-02-14  PDBJ  
BJO  "Initial release"   2019-03-20  RCSB  
BJO  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BJO
_pdbx_chem_comp_synonyms.name        "CHROMOPHORE (GLU-TYR-GLY)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
