data_CYR
#

_chem_comp.id                                   CYR
_chem_comp.name                                 "N~5~-[{[(2R)-2-AMINO-2-CARBOXYETHYL]SULFANYL}(IMINIO)METHYL]-L-ORNITHINATE"
_chem_comp.type                                 "L-PEPTIDE LINKING"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C9 H19 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id              CYS
_chem_comp.pdbx_synonyms                        "L-CYSTEIN-S-1-(IMINOMETHYL)-L-ORNITHINE"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2005-08-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       279.337
_chem_comp.one_letter_code                      C
_chem_comp.three_letter_code                    CYR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2AAF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CYR  O1    O1    O  0  1  N  N  N  29.580  48.993   0.445   6.859   0.899  -1.413  O1    CYR   1  
CYR  C1    C1    C  0  1  N  N  N  28.740  49.857   0.713   6.519   0.391  -0.218  C1    CYR   2  
CYR  O2    O2    O  0  1  N  N  N  28.132  50.409  -0.196   7.182   0.649   0.759  O2    CYR   3  
CYR  C2    C2    C  0  1  N  N  S  28.469  50.228   2.172   5.311  -0.502  -0.095  C2    CYR   4  
CYR  N2    N2    N  0  1  N  N  N  28.160  51.663   2.246   5.412  -1.295   1.137  N2    CYR   5  
CYR  C3    C3    C  0  1  N  N  N  27.292  49.405   2.696   4.045   0.356  -0.047  C3    CYR   6  
CYR  C4    C4    C  0  1  N  N  N  27.705  47.942   2.879   2.814  -0.551  -0.047  C4    CYR   7  
CYR  C5    C5    C  0  1  N  N  N  26.567  47.099   3.457   1.548   0.307   0.001  C5    CYR   8  
CYR  N6    N6    N  0  1  N  N  N  27.077  45.749   3.736   0.368  -0.562   0.000  N6    CYR   9  
CYR  C7    C7    C  0  1  N  N  N  25.984  44.875   4.187  -0.892  -0.011   0.040  C7    CYR  10  
CYR  N7    N7    N  1  1  N  N  N  26.488  43.504   4.352  -1.036   1.285   0.078  N7    CYR  11  
CYR  SG    SG    S  0  1  N  N  N  25.174  45.453   5.727  -2.310  -1.056   0.039  SG    CYR  12  
CYR  CB    CB    C  0  1  N  N  N  26.544  45.857   6.872  -3.620   0.192   0.099  CB    CYR  13  
CYR  CA    CA    C  0  1  N  N  R  27.066  44.649   7.653  -4.984  -0.501   0.107  CA    CYR  14  
CYR  C     C     C  0  1  N  N  N  28.329  45.065   8.359  -6.075   0.538   0.157  C     CYR  15  
CYR  O     O     O  0  1  N  N  N  29.416  45.004   7.789  -6.657   0.852  -0.854  O     CYR  16  
CYR  N     N     N  0  1  N  N  N  26.059  44.144   8.582  -5.131  -1.307  -1.112  N     CYR  17  
CYR  OXT   OXT   O  0  1  N  Y  N  28.168  45.516   9.596  -6.399   1.116   1.324  OXT   CYR  18  
CYR  HO1   HO1   H  0  1  N  N  N  29.630  48.880  -0.497   7.634   1.472  -1.492  HO1   CYR  19  
CYR  HC2   H2    H  0  1  N  N  N  29.353  50.013   2.790   5.264  -1.171  -0.954  HC2   CYR  20  
CYR  HN21  1HN2  H  0  0  N  N  N  28.559  52.047   3.078   5.453  -0.639   1.902  HN21  CYR  21  
CYR  HN22  2HN2  H  0  0  N  N  N  27.168  51.790   2.263   4.542  -1.797   1.232  HN22  CYR  22  
CYR  H31   1H3   H  0  1  N  N  N  26.468  49.456   1.969   4.051   0.961   0.860  H31   CYR  23  
CYR  H32   2H3   H  0  1  N  N  N  26.969  49.813   3.665   4.016   1.009  -0.919  H32   CYR  24  
CYR  H41   1H4   H  0  1  N  N  N  28.549  47.909   3.584   2.808  -1.156  -0.954  H41   CYR  25  
CYR  H42   2H4   H  0  1  N  N  N  27.987  47.530   1.899   2.843  -1.204   0.825  H42   CYR  26  
CYR  H51   1H5   H  0  1  N  N  N  25.737  47.045   2.737   1.553   0.912   0.908  H51   CYR  27  
CYR  H52   2H5   H  0  1  N  N  N  26.200  47.557   4.387   1.518   0.960  -0.871  H52   CYR  28  
CYR  HN6   HN6   H  0  1  N  N  N  28.031  45.466   3.634   0.476  -1.525  -0.028  HN6   CYR  29  
CYR  HN71  1HN7  H  0  0  N  N  N  27.421  43.181   4.192  -1.925   1.673   0.106  HN71  CYR  30  
CYR  HN72  2HN7  H  0  0  N  N  N  25.706  42.961   4.657  -0.255   1.860   0.079  HN72  CYR  31  
CYR  HB3   1HB   H  0  1  N  N  N  26.152  46.575   7.608  -3.511   0.790   1.004  HB3   CYR  32  
CYR  HB2   2HB   H  0  1  N  N  N  27.375  46.267   6.280  -3.546   0.839  -0.775  HB2   CYR  33  
CYR  HA    HA    H  0  1  N  N  N  27.287  43.818   6.967  -5.058  -1.147   0.981  HA    CYR  34  
CYR  H     1HN   H  0  1  N  N  N  25.302  44.795   8.639  -6.077  -1.658  -1.115  H     CYR  35  
CYR  H2    2HN   H  0  1  N  Y  N  26.468  44.029   9.487  -5.056  -0.670  -1.891  H2    CYR  36  
CYR  HXT   HXT   H  0  1  N  Y  N  29.010  45.774   9.951  -7.098   1.783   1.356  HXT   CYR  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CYR  O1   C1    SING  N  N   1  
CYR  O1   HO1   SING  N  N   2  
CYR  C1   O2    DOUB  N  N   3  
CYR  C1   C2    SING  N  N   4  
CYR  C2   N2    SING  N  N   5  
CYR  C2   C3    SING  N  N   6  
CYR  C2   HC2   SING  N  N   7  
CYR  N2   HN21  SING  N  N   8  
CYR  N2   HN22  SING  N  N   9  
CYR  C3   C4    SING  N  N  10  
CYR  C3   H31   SING  N  N  11  
CYR  C3   H32   SING  N  N  12  
CYR  C4   C5    SING  N  N  13  
CYR  C4   H41   SING  N  N  14  
CYR  C4   H42   SING  N  N  15  
CYR  C5   N6    SING  N  N  16  
CYR  C5   H51   SING  N  N  17  
CYR  C5   H52   SING  N  N  18  
CYR  N6   C7    SING  N  N  19  
CYR  N6   HN6   SING  N  N  20  
CYR  C7   N7    DOUB  N  N  21  
CYR  C7   SG    SING  N  N  22  
CYR  N7   HN71  SING  N  N  23  
CYR  N7   HN72  SING  N  N  24  
CYR  SG   CB    SING  N  N  25  
CYR  CB   CA    SING  N  N  26  
CYR  CB   HB3   SING  N  N  27  
CYR  CB   HB2   SING  N  N  28  
CYR  CA   C     SING  N  N  29  
CYR  CA   N     SING  N  N  30  
CYR  CA   HA    SING  N  N  31  
CYR  C    O     DOUB  N  N  32  
CYR  C    OXT   SING  N  N  33  
CYR  N    H     SING  N  N  34  
CYR  N    H2    SING  N  N  35  
CYR  OXT  HXT   SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CYR  SMILES            ACDLabs               10.04  "O=C(O)C(N)CCCNC(\SCC(N)C(=O)O)=[NH2+]"  
CYR  SMILES_CANONICAL  CACTVS                3.341  "N[C@@H](CCCNC(=[NH2+])SC[C@H](N)C(O)=O)C(O)=O"  
CYR  SMILES            CACTVS                3.341  "N[CH](CCCNC(=[NH2+])SC[CH](N)C(O)=O)C(O)=O"  
CYR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C(C[C@@H](C(=O)O)N)CNC(=[NH2+])SC[C@@H](C(=O)O)N"  
CYR  SMILES            "OpenEye OEToolkits"  1.5.0  "C(CC(C(=O)O)N)CNC(=[NH2+])SCC(C(=O)O)N"  
CYR  InChI             InChI                 1.03   "InChI=1S/C9H18N4O4S/c10-5(7(14)15)2-1-3-13-9(12)18-4-6(11)8(16)17/h5-6H,1-4,10-11H2,(H2,12,13)(H,14,15)(H,16,17)/p+1/t5-,6-/m0/s1"  
CYR  InChIKey          InChI                 1.03   FBDBZWJNHYXEKT-WDSKDSINSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CYR  "SYSTEMATIC NAME"  ACDLabs               10.04  "{[(4S)-4-amino-4-carboxybutyl]amino}{[(2R)-2-amino-2-carboxyethyl]sulfanyl}methaniminium"  
CYR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[[[(4S)-4-amino-5-hydroxy-5-oxo-pentyl]amino]-[(2R)-2-amino-3-hydroxy-3-oxo-propyl]sulfanyl-methylidene]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CYR  "Create component"   2005-08-04  RCSB  
CYR  "Modify descriptor"  2011-06-04  RCSB  
CYR  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CYR
_pdbx_chem_comp_synonyms.name        "L-CYSTEIN-S-1-(IMINOMETHYL)-L-ORNITHINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
