data_D8E
#

_chem_comp.id                                   D8E
_chem_comp.name                                 "~{N}-[(2~{S},5~{S},14~{S})-2-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-9-methyl-3,8,15-tris(oxidanylidene)-1,4,9-triazacyclopentadec-14-yl]-5-methyl-1,2-oxazole-3-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H34 F N5 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "LIPID FRAGMENT"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-01-09
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       531.576
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D8E
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6FFS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D8E  C2   C1   C  0  1  N  N  S  -28.295   4.670   0.221   1.447   0.812   0.160  C2   D8E   1  
D8E  C3   C2   C  0  1  N  N  N  -28.306   5.532   1.508   2.315   1.045   1.398  C3   D8E   2  
D8E  C13  C3   C  0  1  N  N  S  -26.279   6.419  -2.550   1.420  -2.300  -2.038  C13  D8E   3  
D8E  C14  C4   C  0  1  N  N  N  -26.277   7.925  -2.612   2.243  -2.150  -3.319  C14  D8E   4  
D8E  C15  C5   C  0  1  N  N  N  -26.304   5.756  -3.969   0.135  -3.073  -2.339  C15  D8E   5  
D8E  C17  C6   C  0  1  N  N  N  -25.625   4.363  -3.954  -0.226  -3.948  -1.136  C17  D8E   6  
D8E  C18  C7   C  0  1  N  N  N  -25.823   3.515  -5.183  -1.549  -3.501  -0.569  C18  D8E   7  
D8E  C21  C8   C  0  1  Y  N  N  -29.584   5.455   2.338   3.734   1.321   0.973  C21  D8E   8  
D8E  C22  C9   C  0  1  Y  N  N  -29.493   5.266   3.725   4.107   2.597   0.594  C22  D8E   9  
D8E  C23  C10  C  0  1  Y  N  N  -30.647   5.192   4.509   5.408   2.851   0.205  C23  D8E  10  
D8E  C24  C11  C  0  1  Y  N  N  -31.900   5.315   3.906   6.339   1.826   0.193  C24  D8E  11  
D8E  C25  C12  C  0  1  Y  N  N  -31.992   5.524   2.530   5.965   0.548   0.573  C25  D8E  12  
D8E  C26  C13  C  0  1  Y  N  N  -30.836   5.597   1.745   4.664   0.298   0.967  C26  D8E  13  
D8E  C27  C14  C  0  1  N  N  N  -24.348   2.143  -3.859  -3.453  -3.767   0.868  C27  D8E  14  
D8E  C28  C15  C  0  1  N  N  N  -24.837   1.053  -2.858  -3.191  -2.945   2.132  C28  D8E  15  
D8E  C29  C16  C  0  1  N  N  N  -25.582   1.606  -1.598  -3.006  -1.474   1.755  C29  D8E  16  
D8E  N1   N1   N  0  1  N  N  N  -28.024   3.235   0.415   0.019   0.875   0.537  N1   D8E  17  
D8E  C4   C17  C  0  1  N  N  N  -28.051   2.263  -0.543  -0.273   0.538   1.826  C4   D8E  18  
D8E  O5   O1   O  0  1  N  N  N  -28.356   2.564  -1.691   0.607   0.201   2.589  O5   D8E  19  
D8E  C6   C18  C  0  1  N  N  S  -27.719   0.782  -0.353  -1.707   0.593   2.286  C6   D8E  20  
D8E  N7   N2   N  0  1  N  N  N  -28.598   0.027  -1.234  -2.566   0.978   1.164  N7   D8E  21  
D8E  C8   C19  C  0  1  N  N  N  -26.228   0.504  -0.704  -2.130  -0.784   2.802  C8   D8E  22  
D8E  C9   C20  C  0  1  N  N  N  -29.636  -0.679  -0.740  -2.746   2.281   0.870  C9   D8E  23  
D8E  C10  C21  C  0  1  N  N  N  -27.176   5.158  -0.651   1.742  -0.549  -0.414  C10  D8E  24  
D8E  N11  N3   N  0  1  N  N  N  -27.405   5.937  -1.733   1.060  -0.963  -1.520  N11  D8E  25  
D8E  O12  O2   O  0  1  N  N  N  -26.048   4.837  -0.293   2.574  -1.267   0.101  O12  D8E  26  
D8E  O16  O3   O  0  1  N  N  N  -26.193   8.680  -1.519   3.488  -1.517  -3.014  O16  D8E  27  
D8E  O19  O4   O  0  1  N  N  N  -26.521   3.917  -6.143  -2.066  -2.467  -0.937  O19  D8E  28  
D8E  N20  N4   N  0  1  N  N  N  -25.139   2.337  -5.095  -2.155  -4.292   0.373  N20  D8E  29  
D8E  F30  F1   F  0  1  N  N  N  -33.008   5.247   4.640   7.611   2.073  -0.188  F30  D8E  30  
D8E  C31  C22  C  0  1  Y  N  N  -30.503  -1.398  -1.686  -3.615   2.672  -0.267  C31  D8E  31  
D8E  O32  O5   O  0  1  N  N  N  -29.919  -0.754   0.440  -2.196   3.136   1.536  O32  D8E  32  
D8E  N33  N5   N  0  1  Y  N  N  -30.191  -1.545  -2.909  -4.274   1.870  -1.066  N33  D8E  33  
D8E  O34  O6   O  0  1  Y  N  N  -31.265  -2.270  -3.491  -4.900   2.488  -1.895  O34  D8E  34  
D8E  C35  C23  C  0  1  Y  N  N  -32.148  -2.460  -2.517  -4.740   3.811  -1.757  C35  D8E  35  
D8E  C36  C24  C  0  1  Y  N  N  -31.803  -1.964  -1.340  -3.907   3.993  -0.705  C36  D8E  36  
D8E  C37  C25  C  0  1  N  N  N  -33.417  -3.195  -2.837  -5.364   4.887  -2.607  C37  D8E  37  
D8E  C38  C26  C  0  1  N  N  N  -25.152   1.336  -6.140  -1.571  -5.548   0.851  C38  D8E  38  
D8E  H1   H1   H  0  1  N  N  N  -29.253   4.802  -0.303   1.662   1.578  -0.585  H1   D8E  39  
D8E  H2   H2   H  0  1  N  N  N  -27.469   5.205   2.143   1.931   1.899   1.956  H2   D8E  40  
D8E  H3   H3   H  0  1  N  N  N  -28.155   6.581   1.215   2.291   0.158   2.031  H3   D8E  41  
D8E  H4   H4   H  0  1  N  N  N  -25.344   6.103  -2.064   2.003  -2.837  -1.290  H4   D8E  42  
D8E  H5   H5   H  0  1  N  N  N  -25.422   8.205  -3.245   2.432  -3.134  -3.747  H5   D8E  43  
D8E  H6   H6   H  0  1  N  N  N  -27.213   8.213  -3.113   1.692  -1.541  -4.036  H6   D8E  44  
D8E  H7   H7   H  0  1  N  N  N  -25.770   6.407  -4.678  -0.675  -2.370  -2.533  H7   D8E  45  
D8E  H8   H8   H  0  1  N  N  N  -27.349   5.641  -4.292   0.286  -3.704  -3.214  H8   D8E  46  
D8E  H9   H9   H  0  1  N  N  N  -26.022   3.805  -3.093  -0.300  -4.988  -1.452  H9   D8E  47  
D8E  H10  H10  H  0  1  N  N  N  -24.544   4.518  -3.823   0.546  -3.854  -0.373  H10  D8E  48  
D8E  H11  H11  H  0  1  N  N  N  -28.523   5.177   4.191   3.380   3.396   0.603  H11  D8E  49  
D8E  H12  H12  H  0  1  N  N  N  -30.570   5.040   5.576   5.698   3.848  -0.091  H12  D8E  50  
D8E  H13  H13  H  0  1  N  N  N  -32.962   5.630   2.067   6.690  -0.252   0.564  H13  D8E  51  
D8E  H14  H14  H  0  1  N  N  N  -30.915   5.763   0.681   4.373  -0.698   1.267  H14  D8E  52  
D8E  H15  H15  H  0  1  N  N  N  -23.324   1.878  -4.161  -4.120  -4.597   1.101  H15  D8E  53  
D8E  H16  H16  H  0  1  N  N  N  -24.335   3.103  -3.321  -3.907  -3.134   0.106  H16  D8E  54  
D8E  H17  H17  H  0  1  N  N  N  -25.523   0.380  -3.393  -4.038  -3.043   2.811  H17  D8E  55  
D8E  H18  H18  H  0  1  N  N  N  -23.960   0.485  -2.515  -2.288  -3.310   2.622  H18  D8E  56  
D8E  H19  H19  H  0  1  N  N  N  -24.858   2.166  -0.987  -2.526  -1.406   0.778  H19  D8E  57  
D8E  H20  H20  H  0  1  N  N  N  -26.378   2.285  -1.938  -3.979  -0.984   1.715  H20  D8E  58  
D8E  H21  H21  H  0  1  N  N  N  -27.797   2.943   1.344  -0.668   1.140  -0.094  H21  D8E  59  
D8E  H22  H22  H  0  1  N  N  N  -27.897   0.501   0.696  -1.804   1.326   3.087  H22  D8E  60  
D8E  H23  H23  H  0  1  N  N  N  -28.430   0.032  -2.220  -3.005   0.296   0.632  H23  D8E  61  
D8E  H24  H24  H  0  1  N  N  N  -26.169  -0.456  -1.238  -2.694  -0.668   3.728  H24  D8E  62  
D8E  H25  H25  H  0  1  N  N  N  -25.656   0.437   0.234  -1.243  -1.390   2.990  H25  D8E  63  
D8E  H26  H26  H  0  1  N  N  N  -28.342   6.186  -1.979   0.381  -0.413  -1.941  H26  D8E  64  
D8E  H27  H27  H  0  1  N  N  N  -26.207   9.597  -1.765   4.062  -1.389  -3.781  H27  D8E  65  
D8E  H28  H28  H  0  1  N  N  N  -32.330  -1.975  -0.397  -3.551   4.925  -0.292  H28  D8E  66  
D8E  H29  H29  H  0  1  N  N  N  -33.418  -3.481  -3.899  -5.986   4.428  -3.375  H29  D8E  67  
D8E  H30  H30  H  0  1  N  N  N  -33.484  -4.099  -2.214  -5.979   5.534  -1.981  H30  D8E  68  
D8E  H31  H31  H  0  1  N  N  N  -34.279  -2.544  -2.632  -4.580   5.478  -3.079  H31  D8E  69  
D8E  H32  H32  H  0  1  N  N  N  -24.529   0.481  -5.838  -0.622  -5.723   0.345  H32  D8E  70  
D8E  H33  H33  H  0  1  N  N  N  -26.184   0.996  -6.309  -1.404  -5.485   1.926  H33  D8E  71  
D8E  H34  H34  H  0  1  N  N  N  -24.753   1.770  -7.068  -2.254  -6.371   0.637  H34  D8E  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D8E  O19  C18  DOUB  N  N   1  
D8E  C38  N20  SING  N  N   2  
D8E  C18  N20  SING  N  N   3  
D8E  C18  C17  SING  N  N   4  
D8E  N20  C27  SING  N  N   5  
D8E  C15  C17  SING  N  N   6  
D8E  C15  C13  SING  N  N   7  
D8E  C27  C28  SING  N  N   8  
D8E  O34  N33  SING  Y  N   9  
D8E  O34  C35  SING  Y  N  10  
D8E  N33  C31  DOUB  Y  N  11  
D8E  C28  C29  SING  N  N  12  
D8E  C37  C35  SING  N  N  13  
D8E  C14  C13  SING  N  N  14  
D8E  C14  O16  SING  N  N  15  
D8E  C13  N11  SING  N  N  16  
D8E  C35  C36  DOUB  Y  N  17  
D8E  N11  C10  SING  N  N  18  
D8E  O5   C4   DOUB  N  N  19  
D8E  C31  C36  SING  Y  N  20  
D8E  C31  C9   SING  N  N  21  
D8E  C29  C8   SING  N  N  22  
D8E  N7   C9   SING  N  N  23  
D8E  N7   C6   SING  N  N  24  
D8E  C9   O32  DOUB  N  N  25  
D8E  C8   C6   SING  N  N  26  
D8E  C10  O12  DOUB  N  N  27  
D8E  C10  C2   SING  N  N  28  
D8E  C4   C6   SING  N  N  29  
D8E  C4   N1   SING  N  N  30  
D8E  C2   N1   SING  N  N  31  
D8E  C2   C3   SING  N  N  32  
D8E  C3   C21  SING  N  N  33  
D8E  C26  C21  DOUB  Y  N  34  
D8E  C26  C25  SING  Y  N  35  
D8E  C21  C22  SING  Y  N  36  
D8E  C25  C24  DOUB  Y  N  37  
D8E  C22  C23  DOUB  Y  N  38  
D8E  C24  C23  SING  Y  N  39  
D8E  C24  F30  SING  N  N  40  
D8E  C2   H1   SING  N  N  41  
D8E  C3   H2   SING  N  N  42  
D8E  C3   H3   SING  N  N  43  
D8E  C13  H4   SING  N  N  44  
D8E  C14  H5   SING  N  N  45  
D8E  C14  H6   SING  N  N  46  
D8E  C15  H7   SING  N  N  47  
D8E  C15  H8   SING  N  N  48  
D8E  C17  H9   SING  N  N  49  
D8E  C17  H10  SING  N  N  50  
D8E  C22  H11  SING  N  N  51  
D8E  C23  H12  SING  N  N  52  
D8E  C25  H13  SING  N  N  53  
D8E  C26  H14  SING  N  N  54  
D8E  C27  H15  SING  N  N  55  
D8E  C27  H16  SING  N  N  56  
D8E  C28  H17  SING  N  N  57  
D8E  C28  H18  SING  N  N  58  
D8E  C29  H19  SING  N  N  59  
D8E  C29  H20  SING  N  N  60  
D8E  N1   H21  SING  N  N  61  
D8E  C6   H22  SING  N  N  62  
D8E  N7   H23  SING  N  N  63  
D8E  C8   H24  SING  N  N  64  
D8E  C8   H25  SING  N  N  65  
D8E  N11  H26  SING  N  N  66  
D8E  O16  H27  SING  N  N  67  
D8E  C36  H28  SING  N  N  68  
D8E  C37  H29  SING  N  N  69  
D8E  C37  H30  SING  N  N  70  
D8E  C37  H31  SING  N  N  71  
D8E  C38  H32  SING  N  N  72  
D8E  C38  H33  SING  N  N  73  
D8E  C38  H34  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D8E  InChI             InChI                 1.03   "InChI=1S/C26H34FN5O6/c1-16-13-22(31-38-16)26(37)29-20-5-3-4-12-32(2)23(34)11-10-19(15-33)28-25(36)21(30-24(20)35)14-17-6-8-18(27)9-7-17/h6-9,13,19-21,33H,3-5,10-12,14-15H2,1-2H3,(H,28,36)(H,29,37)(H,30,35)/t19-,20-,21-/m0/s1"  
D8E  InChIKey          InChI                 1.03   NMKVYCKPYPCEGS-ACRUOGEOSA-N  
D8E  SMILES_CANONICAL  CACTVS                3.385  "CN1CCCC[C@H](NC(=O)c2cc(C)on2)C(=O)N[C@@H](Cc3ccc(F)cc3)C(=O)N[C@H](CO)CCC1=O"  
D8E  SMILES            CACTVS                3.385  "CN1CCCC[CH](NC(=O)c2cc(C)on2)C(=O)N[CH](Cc3ccc(F)cc3)C(=O)N[CH](CO)CCC1=O"  
D8E  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1cc(no1)C(=O)N[C@H]2CCCCN(C(=O)CC[C@H](NC(=O)[C@@H](NC2=O)Cc3ccc(cc3)F)CO)C"  
D8E  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1cc(no1)C(=O)NC2CCCCN(C(=O)CCC(NC(=O)C(NC2=O)Cc3ccc(cc3)F)CO)C"  
#
_pdbx_chem_comp_identifier.comp_id          D8E
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "~{N}-[(2~{S},5~{S},14~{S})-2-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-9-methyl-3,8,15-tris(oxidanylidene)-1,4,9-triazacyclopentadec-14-yl]-5-methyl-1,2-oxazole-3-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D8E  "Create component"  2018-01-09  RCSB  
D8E  "Initial release"   2018-02-21  RCSB  
D8E  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     D8E
_pdbx_chem_comp_synonyms.name        "LIPID FRAGMENT"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
