data_DYF
#

_chem_comp.id                                   DYF
_chem_comp.name                                 "[(3~{R})-2,2-dimethyl-4-[[3-[2-[[(~{E})-oct-2-enoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H36 N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-19
_chem_comp.pdbx_modified_date                   2020-05-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       465.478
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DYF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6KXF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DYF  C29  C1   C  0  1  N  N  N  -15.652  -24.726  27.675  -13.019  -0.029   0.315  C29  DYF   1  
DYF  C26  C2   C  0  1  N  N  N  -15.922  -22.531  24.422   -9.337  -1.077   0.408  C26  DYF   2  
DYF  C25  C3   C  0  1  N  N  N  -16.463  -21.313  24.575   -8.241  -0.365   0.651  C25  DYF   3  
DYF  O13  O1   O  0  1  N  N  N  -21.629  -15.986  27.615    3.732   2.487   0.369  O13  DYF   4  
DYF  C21  C4   C  0  1  N  N  N  -15.665  -17.838  23.947   -4.533  -0.547  -0.131  C21  DYF   5  
DYF  C17  C5   C  0  1  N  N  N  -19.150  -16.838  24.316   -1.038   0.716   0.021  C17  DYF   6  
DYF  O11  O2   O  0  1  N  N  N  -19.685  -14.681  30.285    4.877   0.082  -1.939  O11  DYF   7  
DYF  N22  N1   N  0  1  N  N  N  -15.818  -19.000  23.276   -5.829  -0.096   0.383  N22  DYF   8  
DYF  C10  C6   C  0  1  N  N  R  -20.935  -15.038  29.725    5.101   1.115  -0.978  C10  DYF   9  
DYF  N19  N2   N  0  1  N  N  N  -17.739  -16.629  24.205   -2.149  -0.006  -0.226  N19  DYF  10  
DYF  C30  C7   C  0  1  N  N  N  -14.357  -25.341  28.258  -14.014   0.084  -0.841  C30  DYF  11  
DYF  C31  C8   C  0  1  N  N  N  -14.528  -26.341  29.409  -15.367   0.555  -0.306  C31  DYF  12  
DYF  N14  N3   N  0  1  N  N  N  -19.398  -16.148  28.040    2.678   0.793  -0.602  N14  DYF  13  
DYF  C28  C9   C  0  1  N  N  N  -15.293  -23.625  26.666  -11.665  -0.500  -0.221  C28  DYF  14  
DYF  C27  C10  C  0  1  N  N  N  -16.124  -23.696  25.404  -10.670  -0.613   0.936  C27  DYF  15  
DYF  C23  C11  C  0  1  N  N  N  -16.254  -20.296  23.427   -6.939  -0.818   0.136  C23  DYF  16  
DYF  C20  C12  C  0  1  N  N  N  -16.854  -17.130  23.181   -3.445   0.445   0.288  C20  DYF  17  
DYF  C16  C13  C  0  1  N  N  N  -19.648  -16.151  25.574    0.294   0.252  -0.507  C16  DYF  18  
DYF  C15  C14  C  0  1  N  N  N  -19.139  -16.862  26.806    1.382   1.244  -0.088  C15  DYF  19  
DYF  C12  C15  C  0  1  N  N  N  -20.739  -15.753  28.377    3.789   1.515  -0.355  C12  DYF  20  
DYF  C01  C16  C  0  1  N  N  N  -20.836  -17.226  31.046    6.410   1.751   1.053  C01  DYF  21  
DYF  C02  C17  C  0  1  N  N  N  -21.609  -15.906  30.822    6.047   0.602   0.111  C02  DYF  22  
DYF  C03  C18  C  0  1  N  N  N  -23.083  -16.231  30.508    5.357  -0.510   0.904  C03  DYF  23  
DYF  C04  C19  C  0  1  N  N  N  -21.581  -15.058  32.121    7.319   0.052  -0.537  C04  DYF  24  
DYF  O05  O3   O  0  1  N  N  N  -22.334  -13.882  31.916    8.202  -0.427   0.479  O05  DYF  25  
DYF  P06  P1   P  0  1  N  N  N  -21.673  -12.364  31.888    9.640  -1.076   0.157  P06  DYF  26  
DYF  O07  O4   O  0  1  N  N  N  -21.960  -11.716  33.234   10.301  -1.621   1.520  O07  DYF  27  
DYF  O08  O5   O  0  1  N  N  N  -22.444  -11.604  30.822    9.473  -2.199  -0.793  O08  DYF  28  
DYF  O09  O6   O  0  1  N  N  N  -20.159  -12.347  31.848   10.599   0.041  -0.495  O09  DYF  29  
DYF  O18  O7   O  0  1  N  N  N  -19.859  -17.463  23.561   -1.112   1.739   0.669  O18  DYF  30  
DYF  O24  O8   O  0  1  N  N  N  -16.318  -20.542  22.242   -6.866  -1.844  -0.513  O24  DYF  31  
DYF  H1   H1   H  0  1  N  N  N  -16.251  -24.294  28.490  -12.902   0.945   0.791  H1   DYF  32  
DYF  H2   H2   H  0  1  N  N  N  -16.234  -25.510  27.169  -13.390  -0.748   1.045  H2   DYF  33  
DYF  H3   H3   H  0  1  N  N  N  -15.305  -22.704  23.553   -9.272  -1.988  -0.169  H3   DYF  34  
DYF  H4   H4   H  0  1  N  N  N  -17.021  -21.053  25.462   -8.306   0.546   1.227  H4   DYF  35  
DYF  H5   H5   H  0  1  N  N  N  -14.689  -17.360  23.774   -4.303  -1.531   0.277  H5   DYF  36  
DYF  H6   H6   H  0  1  N  N  N  -15.839  -17.934  25.029   -4.573  -0.604  -1.218  H6   DYF  37  
DYF  H7   H7   H  0  1  N  N  N  -19.824  -14.241  31.116    4.480  -0.719  -1.571  H7   DYF  38  
DYF  H8   H8   H  0  1  N  N  N  -15.502  -18.873  22.336   -5.887   0.723   0.900  H8   DYF  39  
DYF  H9   H9   H  0  1  N  N  N  -21.551  -14.142  29.562    5.548   1.979  -1.470  H9   DYF  40  
DYF  H10  H10  H  0  1  N  N  N  -17.317  -16.071  24.920   -2.091  -0.824  -0.743  H10  DYF  41  
DYF  H11  H11  H  0  1  N  N  N  -13.837  -25.860  27.440  -13.642   0.803  -1.572  H11  DYF  42  
DYF  H12  H12  H  0  1  N  N  N  -13.731  -24.514  28.625  -14.130  -0.890  -1.317  H12  DYF  43  
DYF  H13  H13  H  0  1  N  N  N  -13.540  -26.702  29.731  -16.076   0.636  -1.129  H13  DYF  44  
DYF  H14  H14  H  0  1  N  N  N  -15.031  -25.846  30.253  -15.739  -0.163   0.425  H14  DYF  45  
DYF  H15  H15  H  0  1  N  N  N  -15.136  -27.192  29.068  -15.251   1.529   0.170  H15  DYF  46  
DYF  H16  H16  H  0  1  N  N  N  -18.643  -15.930  28.658    2.736  -0.025  -1.119  H16  DYF  47  
DYF  H17  H17  H  0  1  N  N  N  -14.232  -23.728  26.395  -11.782  -1.474  -0.697  H17  DYF  48  
DYF  H18  H18  H  0  1  N  N  N  -15.456  -22.646  27.140  -11.293   0.219  -0.951  H18  DYF  49  
DYF  H19  H19  H  0  1  N  N  N  -17.185  -23.716  25.695  -11.042  -1.332   1.666  H19  DYF  50  
DYF  H20  H20  H  0  1  N  N  N  -15.870  -24.630  24.881  -10.553   0.361   1.411  H20  DYF  51  
DYF  H21  H21  H  0  1  N  N  N  -16.473  -16.302  22.565   -3.675   1.429  -0.120  H21  DYF  52  
DYF  H22  H22  H  0  1  N  N  N  -17.380  -17.852  22.540   -3.405   0.503   1.375  H22  DYF  53  
DYF  H23  H23  H  0  1  N  N  N  -19.290  -15.111  25.583    0.524  -0.732  -0.099  H23  DYF  54  
DYF  H24  H24  H  0  1  N  N  N  -20.748  -16.161  25.580    0.254   0.194  -1.594  H24  DYF  55  
DYF  H25  H25  H  0  1  N  N  N  -19.627  -17.846  26.865    1.422   1.302   0.999  H25  DYF  56  
DYF  H26  H26  H  0  1  N  N  N  -18.052  -16.997  26.705    1.152   2.228  -0.496  H26  DYF  57  
DYF  H27  H27  H  0  1  N  N  N  -21.337  -17.817  31.827    5.499   2.190   1.459  H27  DYF  58  
DYF  H28  H28  H  0  1  N  N  N  -20.814  -17.801  30.109    7.025   1.370   1.869  H28  DYF  59  
DYF  H29  H29  H  0  1  N  N  N  -19.807  -16.999  31.362    6.966   2.510   0.503  H29  DYF  60  
DYF  H30  H30  H  0  1  N  N  N  -23.504  -16.845  31.318    5.098  -1.328   0.232  H30  DYF  61  
DYF  H31  H31  H  0  1  N  N  N  -23.655  -15.295  30.423    6.030  -0.875   1.679  H31  DYF  62  
DYF  H32  H32  H  0  1  N  N  N  -23.142  -16.784  29.559    4.450  -0.118   1.365  H32  DYF  63  
DYF  H33  H33  H  0  1  N  N  N  -22.017  -15.636  32.949    7.060  -0.767  -1.209  H33  DYF  64  
DYF  H34  H34  H  0  1  N  N  N  -20.542  -14.793  32.367    7.811   0.844  -1.102  H34  DYF  65  
DYF  H35  H35  H  0  1  N  N  N  -22.554  -10.984  33.113   11.171  -2.026   1.401  H35  DYF  66  
DYF  H36  H36  H  0  1  N  N  N  -19.867  -11.826  31.109   10.753   0.807   0.073  H36  DYF  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DYF  O24  C23  DOUB  N  N   1  
DYF  C20  C21  SING  N  N   2  
DYF  C20  N19  SING  N  N   3  
DYF  N22  C23  SING  N  N   4  
DYF  N22  C21  SING  N  N   5  
DYF  C23  C25  SING  N  N   6  
DYF  O18  C17  DOUB  N  N   7  
DYF  N19  C17  SING  N  N   8  
DYF  C17  C16  SING  N  N   9  
DYF  C26  C25  DOUB  N  E  10  
DYF  C26  C27  SING  N  N  11  
DYF  C27  C28  SING  N  N  12  
DYF  C16  C15  SING  N  N  13  
DYF  C28  C29  SING  N  N  14  
DYF  C15  N14  SING  N  N  15  
DYF  O13  C12  DOUB  N  N  16  
DYF  C29  C30  SING  N  N  17  
DYF  N14  C12  SING  N  N  18  
DYF  C30  C31  SING  N  N  19  
DYF  C12  C10  SING  N  N  20  
DYF  C10  O11  SING  N  N  21  
DYF  C10  C02  SING  N  N  22  
DYF  C03  C02  SING  N  N  23  
DYF  O08  P06  DOUB  N  N  24  
DYF  C02  C01  SING  N  N  25  
DYF  C02  C04  SING  N  N  26  
DYF  O09  P06  SING  N  N  27  
DYF  P06  O05  SING  N  N  28  
DYF  P06  O07  SING  N  N  29  
DYF  O05  C04  SING  N  N  30  
DYF  C29  H1   SING  N  N  31  
DYF  C29  H2   SING  N  N  32  
DYF  C26  H3   SING  N  N  33  
DYF  C25  H4   SING  N  N  34  
DYF  C21  H5   SING  N  N  35  
DYF  C21  H6   SING  N  N  36  
DYF  O11  H7   SING  N  N  37  
DYF  N22  H8   SING  N  N  38  
DYF  C10  H9   SING  N  N  39  
DYF  N19  H10  SING  N  N  40  
DYF  C30  H11  SING  N  N  41  
DYF  C30  H12  SING  N  N  42  
DYF  C31  H13  SING  N  N  43  
DYF  C31  H14  SING  N  N  44  
DYF  C31  H15  SING  N  N  45  
DYF  N14  H16  SING  N  N  46  
DYF  C28  H17  SING  N  N  47  
DYF  C28  H18  SING  N  N  48  
DYF  C27  H19  SING  N  N  49  
DYF  C27  H20  SING  N  N  50  
DYF  C20  H21  SING  N  N  51  
DYF  C20  H22  SING  N  N  52  
DYF  C16  H23  SING  N  N  53  
DYF  C16  H24  SING  N  N  54  
DYF  C15  H25  SING  N  N  55  
DYF  C15  H26  SING  N  N  56  
DYF  C01  H27  SING  N  N  57  
DYF  C01  H28  SING  N  N  58  
DYF  C01  H29  SING  N  N  59  
DYF  C03  H30  SING  N  N  60  
DYF  C03  H31  SING  N  N  61  
DYF  C03  H32  SING  N  N  62  
DYF  C04  H33  SING  N  N  63  
DYF  C04  H34  SING  N  N  64  
DYF  O07  H35  SING  N  N  65  
DYF  O09  H36  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DYF  InChI             InChI                 1.03   "InChI=1S/C19H36N3O8P/c1-4-5-6-7-8-9-15(23)20-12-13-21-16(24)10-11-22-18(26)17(25)19(2,3)14-30-31(27,28)29/h8-9,17,25H,4-7,10-14H2,1-3H3,(H,20,23)(H,21,24)(H,22,26)(H2,27,28,29)/b9-8+/t17-/m0/s1"  
DYF  InChIKey          InChI                 1.03   KFHBREMVHHVYJE-IJDCCNJMSA-N  
DYF  SMILES_CANONICAL  CACTVS                3.385  "CCCCC\C=C\C(=O)NCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"  
DYF  SMILES            CACTVS                3.385  "CCCCCC=CC(=O)NCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"  
DYF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCC/C=C/C(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O"  
DYF  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCC=CC(=O)NCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          DYF
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(3~{R})-2,2-dimethyl-4-[[3-[2-[[(~{E})-oct-2-enoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DYF  "Create component"  2019-09-19  PDBJ  
DYF  "Initial release"   2020-05-06  RCSB  
##
